Citrus Sinensis ID: 030753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVYIQRGAEVA
Secondary Structure (PSIPRED)
ccEEcccccccccEEcccccccccccccccccccccccccccccEEEEEEcccccHHHHHHccccccccccccccccccccccEEEEccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHHHHccccccccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEccccccHEEEEEccccccccccccccccccEEEEcccccccEEEEEccccccccHcccHHHHccccccccccccccccEEEcHccccccccEEEcccccHHHHHHHHHHcccccccEEcccccEEEEEEHHHHEEHHcccccccccccccccccccHHHHHHcccEcc
Coil and Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgrtsfalqlpclllsrpgcrvfSVLATSSDRVSALRRSSAvfasgtltansaapssgvytvgdfmttkeelhvvkptttVDEALEILVEKRitgfpvidddwklvglvsdydllaldsisgsgradnsmfpevdsTWKVYIQRGAEVA
Flexible Loop (DISEMBL)
mdsivlphsisvarlrappagrtsgRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVfasgtltansaapssgvYTVGDFMTTKEElhvvkptttvDEALEILVEKritgfpvidddWKLVGLVSDYDLLALDSIsgsgradnsmfpevdstwkVYIQRGAEVA
Low Complexity Region (SEG)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVYIQRGAEVA
Disordered region (IsUnstruct)
**************************TSFALQLPCLLLSRPGCRVFSVLATSSDRVSAL****AVFASGTL********SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG********FPEVDSTWKVYIQ******
Disordered Region (DISOPRED)
*DSIVL*HSISV***************SFALQLPCLLLSRPGCRVFSV**********************************YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD***************VDSTWKVYIQRGAE**
Disordered Region (DISEMBL)
MDSIVLPHSISVARLR*********RTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVYIQRGAEVA
Disordered Region (DISPRO)
**SIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSS***********VFASGTLTANSAAP*SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS*******SMFPEVDSTWKVYIQRGAEV*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVYIQRGAEVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
O23193	236	CBS domain-containing pro	yes	no	0.558	0.406	0.826	3e-43
Q9C5D0	238	CBS domain-containing pro	no	no	0.610	0.441	0.603	2e-33
P42851	485	Inosine-5'-monophosphate	yes	no	0.395	0.140	0.408	3e-05
O58045	486	Inosine-5'-monophosphate	yes	no	0.470	0.166	0.357	4e-05
O67820	490	Inosine-5'-monophosphate	yes	no	0.226	0.079	0.475	8e-05
Q9UY49	485	Inosine-5'-monophosphate	yes	no	0.470	0.167	0.309	0.0007
Q9UGJ0	569	5'-AMP-activated protein	yes	no	0.290	0.087	0.36	0.0009

>sp|O23193|CBSX1_ARATH CBS domain-containing protein CBSX1, chloroplastic OS=Arabidopsis thaliana GN=CBSX1 PE=1 SV=2

 Score =  174 bits (441), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 89/98 (90%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DW
Sbjct: 59  AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW 118

Query: 127 KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
           KLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK +
Sbjct: 119 KLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTF 156

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5D0|CBSX2_ARATH CBS domain-containing protein CBSX2, chloroplastic OS=Arabidopsis thaliana GN=CBSX2 PE=1 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 88/116 (75%), Gaps = 11/116 (9%)

Query: 60  RRSSAVFASGTLTANSAAPSS-----------GVYTVGDFMTTKEELHVVKPTTTVDEAL 108
           RRSS    S T++A  AAP+S           G YTVGDFMT ++ LHVVKP+T+VD+AL
Sbjct: 43  RRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVKPSTSVDDAL 102

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
           E+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDSTWK +
Sbjct: 103 ELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTF 158

Arabidopsis thaliana (taxid: 3702)

>sp|P42851|IMDH_PYRFU Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=guaB PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 3/71 (4%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G  TV + MT   E+  V  +  V+EAL+I++E RI   PV+++D KL
Sbjct: 137 GIITKKDIAAREG-RTVKELMT--REVITVPESVDVEEALKIMMENRIDRLPVVNEDGKL 193

Query: 129 VGLVSDYDLLA 139
           VGL++  DL+A
Sbjct: 194 VGLITMSDLVA 204

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O58045|IMDH_PYRHO Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=guaB PE=1 SV=1

 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193

Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) (taxid: 70601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|O67820|IMDH_AQUAE Inosine-5'-monophosphate dehydrogenase OS=Aquifex aeolicus (strain VF5) GN=guaB PE=3 SV=1

 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 32/40 (80%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           VKP T V EAL+I+ + +I+G PV+D++ KL+G++++ DL
Sbjct: 103 VKPDTRVKEALDIMAKYKISGVPVVDEERKLIGILTNRDL 142

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Aquifex aeolicus (strain VF5) (taxid: 224324)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q9UY49|IMDH_PYRAB Inosine-5'-monophosphate dehydrogenase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=guaB PE=3 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G ++    A   G   V + MT  +++  V     V+EAL+I++E RI   PV+D + +L
Sbjct: 137 GIISKKDIAAREG-KLVKELMT--KDVITVPENIEVEEALKIMIENRIDRLPVVDKEGRL 193

Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           +GL++  DL+A      + R +N 
Sbjct: 194 IGLITMSDLVARKKYKNAVRDENG 217

Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth.

Pyrococcus abyssi (strain GE5 / Orsay) (taxid: 272844)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 0

EC: 5

>sp|Q9UGJ0|AAKG2_HUMAN 5'-AMP-activated protein kinase subunit gamma-2 OS=Homo sapiens GN=PRKAG2 PE=1 SV=1

 Score = 43.1 bits (100), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           T   +  + P T + +AL I VE+RI+  PV+D+  K+V + S +D++ L
Sbjct: 432 TYHNIAFIHPDTPIIKALNIFVERRISALPVVDESGKVVDIYSKFDVINL 481

AMP/ATP-binding subunit of AMP-activated protein kinase (AMPK), an energy sensor protein kinase that plays a key role in regulating cellular energy metabolism. In response to reduction of intracellular ATP levels, AMPK activates energy-producing pathways and inhibits energy-consuming processes: inhibits protein, carbohydrate and lipid biosynthesis, as well as cell growth and proliferation. AMPK acts via direct phosphorylation of metabolic enzymes, and by longer-term effects via phosphorylation of transcription regulators. Also acts as a regulator of cellular polarity by remodeling the actin cytoskeleton; probably by indirectly activating myosin. Gamma non-catalytic subunit mediates binding to AMP, ADP and ATP, leading to activate or inhibit AMPK: AMP-binding results in allosteric activation of alpha catalytic subunit (PRKAA1 or PRKAA2) both by inducing phosphorylation and preventing dephosphorylation of catalytic subunits. ADP also stimulates phosphorylation, without stimulating already phosphorylated catalytic subunit. ATP promotes dephosphorylation of catalytic subunit, rendering the AMPK enzyme inactive.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
225438783	246	PREDICTED: CBS domain-containing protein	0.953	0.666	0.640	1e-51
317106695	236	JHL03K20.5 [Jatropha curcas]	0.889	0.648	0.682	3e-50
255587643	239	conserved hypothetical protein [Ricinus	0.866	0.623	0.656	1e-45
147802944	288	hypothetical protein VITISV_021555 [Viti	0.953	0.569	0.511	5e-45
224081731	208	predicted protein [Populus trichocarpa]	0.726	0.600	0.696	5e-44
449443418	235	PREDICTED: CBS domain-containing protein	0.843	0.617	0.6	2e-43
449525190	235	PREDICTED: CBS domain-containing protein	0.843	0.617	0.6	3e-43
217075546	224	unknown [Medicago truncatula] gi|3884951	0.622	0.477	0.752	1e-41
357482805	224	Inosine-5'-monophosphate dehydrogenase [	0.622	0.477	0.752	1e-41
15234564	236	cystathionine beta-synthase domain-conta	0.558	0.406	0.826	1e-41

>gi|225438783|ref|XP_002283079.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Vitis vinifera]

 Score =  207 bits (527), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 107/167 (64%), Positives = 128/167 (76%), Gaps = 3/167 (1%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+LP +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILLPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            +RRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GIRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
           GFPVIDDDWKLVGLVSDYDLLALDSISG G  D  MFPEVDSTWK +
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISGGGLTDTIMFPEVDSTWKTF 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106695|dbj|BAJ53196.1| JHL03K20.5 [Jatropha curcas]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 125/167 (74%), Gaps = 14/167 (8%)

Query: 1   MDSIV---LPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVS 57
           MDSI+   L H + + RLRA     TS   SFA QLPCLL SRPG R+  + A     +S
Sbjct: 1   MDSILHQELLH-LPITRLRATA---TSPIVSFAQQLPCLLSSRPGRRLLPLSA-----IS 51

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
             RRSSA+ ASG   A+S  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RIT
Sbjct: 52  HPRRSSAIAASGAFVASS--PKSGVYTVGDFMTRKEDLQVVKPTTTVDEALQTLVEHRIT 109

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
           GFPVIDDDWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWK +
Sbjct: 110 GFPVIDDDWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTF 156

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587643|ref|XP_002534340.1| conserved hypothetical protein [Ricinus communis] gi|223525462|gb|EEF28042.1| conserved hypothetical protein [Ricinus communis]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 105/160 (65%), Positives = 115/160 (71%), Gaps = 11/160 (6%)

Query: 5   VLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           +L H ++  R  A P        SFA QLPCLL S    R    L+     +S  RRSS 
Sbjct: 11  LLNHPLTRLRSTASPT-----VVSFAHQLPCLLSSATVSRRLFHLSV----ISWPRRSST 61

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + A+GTL ANS  P SGVYTVGDFMT KE+L VVKPTTTVDEAL+ LVE RITGFPVIDD
Sbjct: 62  ISATGTLMANS--PKSGVYTVGDFMTRKEDLCVVKPTTTVDEALQTLVEHRITGFPVIDD 119

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
           DWKLVGLVSDYDLLALDSISG GR DNSMFPEVDSTWK +
Sbjct: 120 DWKLVGLVSDYDLLALDSISGGGRTDNSMFPEVDSTWKTF 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802944|emb|CAN64036.1| hypothetical protein VITISV_021555 [Vitis vinifera]

 Score =  185 bits (470), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 107/209 (51%), Positives = 127/209 (60%), Gaps = 45/209 (21%)

Query: 1   MDSIVLPHSISVARLR-APPAGRTSGRTSFALQLPCLLLSRPGCR--VFSVLATSSDRVS 57
           MD+I+ P +++V  +R A  +   SG  SF  Q+PC LL +PG +  V S + + S+R+S
Sbjct: 1   MDAILPPETLAVVGIRPAFASAFGSGSASFPHQMPCTLLFQPGRKPPVGSTVGSRSERIS 60

Query: 58  ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT 117
            LRRS A+ A+GTL ANS    +GVYTVGDFMT KE+LHVVK TTTV+EALEILVE RIT
Sbjct: 61  GLRRSPALAAAGTLMANSVPSKNGVYTVGDFMTRKEDLHVVKATTTVEEALEILVENRIT 120

Query: 118 GFPVIDDDWKLVGLVSDYDLLALDSI---------------------------------- 143
           GFPVIDDDWKLVGLVSDYDLLALDSI                                  
Sbjct: 121 GFPVIDDDWKLVGLVSDYDLLALDSISELPQLKHVPEDISGKSLVLHGSLERQMKSLFLT 180

Query: 144 --------SGSGRADNSMFPEVDSTWKVY 164
                   SG G  D  MFPEVDSTWK +
Sbjct: 181 AVDVLIFGSGGGLTDTIMFPEVDSTWKTF 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081731|ref|XP_002306482.1| predicted protein [Populus trichocarpa] gi|222855931|gb|EEE93478.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 108/135 (80%), Gaps = 10/135 (7%)

Query: 33  LPCLLLSRPGCRVFSVLATSSDRVSALRRSSAVFA---SGTLTANSAAPSSGVYTVGDFM 89
           +PCLL S PG ++ S+ +     +S  RRS ++ A   SGTL ANS  P SGVYTVGDFM
Sbjct: 1   MPCLLFSTPGRKLVSLSS-----ISWPRRSPSLIAAASSGTLMANS--PKSGVYTVGDFM 53

Query: 90  TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRA 149
           T KE+LHVVKPTTTV+EALE LVE+RITGFPVIDDDWKLVGLVSDYDLLALDSISG GR 
Sbjct: 54  TRKEDLHVVKPTTTVNEALETLVERRITGFPVIDDDWKLVGLVSDYDLLALDSISGGGRT 113

Query: 150 DNSMFPEVDSTWKVY 164
           + +MFPEVDSTWK +
Sbjct: 114 ETNMFPEVDSTWKTF 128

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443418|ref|XP_004139474.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 117/165 (70%), Gaps = 20/165 (12%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSVPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY--IQR 167
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WK +  +QR
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQR 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449525190|ref|XP_004169601.1| PREDICTED: CBS domain-containing protein CBSX1, chloroplastic-like [Cucumis sativus]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 117/165 (70%), Gaps = 20/165 (12%)

Query: 9   SISVARLRAPPAGRTSGRTSFALQL----PCLLLSRPGCRVFSVLATSSDRVSALRRSSA 64
           S+S+A  RA          SF++Q     PC    RP   +    A+ +     LR+S++
Sbjct: 10  SLSLAPFRA---------KSFSVQEMLFGPC---RRPSLPILH--ASVAQSFPELRKSTS 55

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
           + ASGTL ANS    +GVY VGDFMT KEELHVVKPTT+VDEALEILVEKRITGFPVIDD
Sbjct: 56  IAASGTLMANSLPSGTGVYIVGDFMTRKEELHVVKPTTSVDEALEILVEKRITGFPVIDD 115

Query: 125 DWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY--IQR 167
           +WKLVG+VSDYDLLALDSISG GR D SMFPEVDS+WK +  +QR
Sbjct: 116 NWKLVGVVSDYDLLALDSISGGGRTDTSMFPEVDSSWKTFNEVQR 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075546|gb|ACJ86133.1| unknown [Medicago truncatula] gi|388495112|gb|AFK35622.1| unknown [Medicago truncatula]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 94/109 (86%), Gaps = 2/109 (1%)

Query: 61  RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
           R S +FA+ TLTANS  P +GVYTVGDFMT K+ELH VKPTTTVDEAL+ LVE RITGFP
Sbjct: 41  RGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFP 100

Query: 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY--IQR 167
           VIDD+WKLVG+VSDYDLLALDSISG G+ DNS+FP+VDSTWK +  +QR
Sbjct: 101 VIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQR 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482805|ref|XP_003611689.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula] gi|355513024|gb|AES94647.1| Inosine-5'-monophosphate dehydrogenase [Medicago truncatula]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 94/109 (86%), Gaps = 2/109 (1%)

Query: 61  RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
           R S +FA+ TLTANS  P +GVYTVGDFMT K+ELH VKPTTTVDEAL+ LVE RITGFP
Sbjct: 41  RGSPLFAANTLTANSVPPKNGVYTVGDFMTKKDELHTVKPTTTVDEALDSLVEHRITGFP 100

Query: 121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY--IQR 167
           VIDD+WKLVG+VSDYDLLALDSISG G+ DNS+FP+VDSTWK +  +QR
Sbjct: 101 VIDDNWKLVGVVSDYDLLALDSISGQGQTDNSLFPDVDSTWKTFNEVQR 149

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234564|ref|NP_195409.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana] gi|75219197|sp|O23193.2|CBSX1_ARATH RecName: Full=CBS domain-containing protein CBSX1, chloroplastic; AltName: Full=CBS domain-containing protein 2; Short=AtCDCP2; AltName: Full=Protein LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2; Short=AtLEJ2; Flags: Precursor gi|4006881|emb|CAB16799.1| putative protein [Arabidopsis thaliana] gi|7270640|emb|CAB80357.1| putative protein [Arabidopsis thaliana] gi|21537376|gb|AAM61717.1| unknown [Arabidopsis thaliana] gi|28392900|gb|AAO41886.1| unknown protein [Arabidopsis thaliana] gi|28827758|gb|AAO50723.1| unknown protein [Arabidopsis thaliana] gi|332661316|gb|AEE86716.1| cystathionine beta-synthase domain-containing protein [Arabidopsis thaliana]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 81/98 (82%), Positives = 89/98 (90%)

Query: 67  ASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DW
Sbjct: 59  AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDW 118

Query: 127 KLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
           KLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK +
Sbjct: 119 KLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTF 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2114970	236	LEJ2 "AT4G36910" [Arabidopsis	0.906	0.661	0.603	1.2e-42
TAIR|locus:2124276	238	LEJ1 "AT4G34120" [Arabidopsis	0.691	0.5	0.568	7.7e-32
UNIPROTKB|Q3AFN9	210	acuB "Acetoin utilization prot	0.290	0.238	0.547	0.00024
TIGR_CMR|CHY_0173	210	CHY_0173 "acetoin utilization	0.290	0.238	0.547	0.00024
TIGR_CMR|CJE_1201	485	CJE_1201 "inosine-5'-monophosp	0.232	0.082	0.525	0.00027

TAIR|locus:2114970 LEJ2 "AT4G36910" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 99/164 (60%), Positives = 117/164 (71%)

Query:     1 MDSIVLPHSISVARLRAPPAGRTSGRTSFALQLPCLLLSRPGCRVFSVLATSSDRVSALR 60
             MD+++    +S   LRA     +S  +S  L LP  L  +P C  F+   +   +     
Sbjct:     1 MDAVLYSVPLSFTPLRA-----SSSPSSPYLLLPRFLSVQP-CHKFTFSRSFPSKSRIPS 54

Query:    61 RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP 120
              SSA  A  TL  NS++P SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFP
Sbjct:    55 ASSA--AGSTLMTNSSSPRSGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFP 112

Query:   121 VIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDSTWKVY 164
             VID+DWKLVGLVSDYDLLALDSISGSGR +NSMFPEVDSTWK +
Sbjct:   113 VIDEDWKLVGLVSDYDLLALDSISGSGRTENSMFPEVDSTWKTF 156

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

TAIR|locus:2124276 LEJ1 "AT4G34120" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 71/125 (56%), Positives = 96/125 (76%)

Query:    46 FSVLATSSDRVSALRRSS----AVFAS-GTLTANSAAPS-SGVYTVGDFMTTKEELHVVK 99
             FS+L  S+ R S+    S    A FA+  ++  N++ P+ +G YTVGDFMT ++ LHVVK
Sbjct:    34 FSLLPLSNRRRSSTFSPSITVSAFFAAPASVNNNNSVPAKNGGYTVGDFMTPRQNLHVVK 93

Query:   100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPEVDS 159
             P+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDSISG  + D ++FP+VDS
Sbjct:    94 PSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDS 153

Query:   160 TWKVY 164
             TWK +
Sbjct:   154 TWKTF 158

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

UNIPROTKB|Q3AFN9 acuB "Acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CHY_0173 CHY_0173 "acetoin utilization protein AcuB" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 106 (42.4 bits), Expect = 0.00024, P = 0.00024
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query:    85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V D MT   EL  VK T T+ EA+    EKRI   PV+DD  KLVG+VSD DL
Sbjct:     3 VKDIMT--RELITVKSTDTIREAMAKGHEKRIRHLPVVDDG-KLVGIVSDRDL 52

GO:0003674 "molecular_function" evidence=ND

GO:0006091 "generation of precursor metabolites and energy" evidence=ISS

GO:0045150 "acetoin catabolic process" evidence=ISS

TIGR_CMR|CJE_1201 CJE_1201 "inosine-5'-monophosphate dehydrogenase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 111 (44.1 bits), Expect = 0.00027, P = 0.00027
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query:    98 VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
             V P  +V EALEI+ E RI+G PV+D+D KL+G++++ DL
Sbjct:    99 VSPKASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDL 138


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.376    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      172       172   0.00093  108 3  11 22  0.40    32
                                                     31  0.48    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  137 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.15u 0.11s 16.26t   Elapsed:  00:00:00
  Total cpu time:  16.15u 0.11s 16.26t   Elapsed:  00:00:00
  Start:  Thu May  9 19:19:16 2013   End:  Thu May  9 19:19:16 2013

GO:0003938 "IMP dehydrogenase activity" evidence=ISS

GO:0009152 "purine ribonucleotide biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O23193	CBSX1_ARATH	No assigned EC number	0.8265	0.5581	0.4067	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00019540001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (213 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00023053001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (430 aa)	•						•		0.707
	GSVIVG00036526001	RecName- Full=N-acetyl-gamma-glutamyl-phosphate reductase; EC=1.2.1.38; (398 aa)	•								0.556
	GSVIVG00000640001	RecName- Full=DNA topoisomerase 2; EC=5.99.1.3; (661 aa)	•								0.553
	GSVIVG00025551001	RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa)							•		0.474

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam00571	57	pfam00571, CBS, CBS domain	2e-13
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	1e-10
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-10
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	2e-09
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-09
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	2e-09
cd04601	110	cd04601, CBS_pair_IMPDH, This cd contains two tand	3e-09
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	4e-09
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	5e-09
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	6e-09
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-08
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	2e-08
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	2e-08
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	5e-08
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	5e-08
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	7e-08
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	9e-08
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	1e-07
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	2e-07
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-07
PRK05567	486	PRK05567, PRK05567, inosine 5'-monophosphate dehyd	3e-07
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-07
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	3e-07
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	3e-07
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	4e-07
PRK07107	502	PRK07107, PRK07107, inosine 5-monophosphate dehydr	4e-07
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	8e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-06
cd04641	120	cd04641, CBS_pair_28, The CBS domain, named after	1e-06
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	1e-06
cd04803	122	cd04803, CBS_pair_15, The CBS domain, named after	2e-06
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	2e-06
cd04637	122	cd04637, CBS_pair_24, The CBS domain, named after	2e-06
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	2e-06
COG2524	294	COG2524, COG2524, Predicted transcriptional regula	3e-06
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	4e-06
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	5e-06
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	8e-06
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	1e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	1e-05
cd04634	143	cd04634, CBS_pair_21, The CBS domain, named after	3e-05
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	3e-05
cd04614	96	cd04614, CBS_pair_1, The CBS domain, named after h	3e-05
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	4e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	4e-05
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	4e-05
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	6e-05
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	7e-05
cd04638	106	cd04638, CBS_pair_25, The CBS domain, named after	7e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	7e-05
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	7e-05
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	8e-05
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	9e-05
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	1e-04
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	1e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	1e-04
cd04626	111	cd04626, CBS_pair_13, The CBS domain, named after	1e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-04
cd04600	124	cd04600, CBS_pair_HPP_assoc, This cd contains two	2e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-04
cd04635	122	cd04635, CBS_pair_22, The CBS domain, named after	2e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	2e-04
cd04608	124	cd04608, CBS_pair_PALP_assoc, This cd contains two	2e-04
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	2e-04
cd04598	119	cd04598, CBS_pair_GGDEF_assoc, This cd contains tw	3e-04
cd04610	107	cd04610, CBS_pair_ParBc_assoc, This cd contains tw	3e-04
cd04602	114	cd04602, CBS_pair_IMPDH_2, This cd contains two ta	4e-04
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	4e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	5e-04
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	6e-04
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	8e-04
COG1253	429	COG1253, TlyC, Hemolysins and related proteins con	8e-04
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	8e-04
TIGR01302	450	TIGR01302, IMP_dehydrog, inosine-5'-monophosphate	0.001
COG3448	382	COG3448, COG3448, CBS-domain-containing membrane p	0.001
PTZ00314	495	PTZ00314, PTZ00314, inosine-5'-monophosphate dehyd	0.002
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	0.002
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	0.002
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	0.002
PLN02274	505	PLN02274, PLN02274, inosine-5'-monophosphate dehyd	0.002
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	0.003
cd04609	110	cd04609, CBS_pair_PALP_assoc2, This cd contains tw	0.003
cd04596	108	cd04596, CBS_pair_DRTGG_assoc, This cd contains tw	0.003
cd04597	113	cd04597, CBS_pair_DRTGG_assoc2, This cd contains t	0.003
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	0.003

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 61.0 bits (149), Expect = 2e-13
 Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  V P T+++EALE++ E  I+  PV+D+D KLVG+V+  DLL
Sbjct: 1   VKDIMTPD--VVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLL 52

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT    +  + P  ++ +A E+++EKR+ G PV+DDD KLVG+V++ DLL
Sbjct: 72  VRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLL 123

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT   ++  VKP T+V +AL ++ E  ++  PV+DD  KLVG++++ D+L
Sbjct: 1   VKDIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDIL 51

Length = 117

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 52.1 bits (126), Expect = 2e-09
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P  TV EALE++ E  I+G PV+DDD KLVG+V++ DL
Sbjct: 7   VSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDL 46

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV EAL +++E  I+G PV+DDD +LVG+V++ DLL
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 38/55 (69%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT   ++  V P T+++EA E+++E  I   PV+DD+ +LVG+V+  D+L
Sbjct: 59  TVGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDIL 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239974 cd04601, CBS_pair_IMPDH, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 51.7 bits (125), Expect = 3e-09
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT  E L      T+++EALE+L E +I   PV+DD+ KL GL+
Sbjct: 55  PVSEVMT-PENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLI 102

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 110

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 51.4 bits (124), Expect = 4e-09
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALDSI---SGSGRA 149
                P  +V EA+E L++ +I+G PV+DD+  LVG +S+ D L   L+S     G    
Sbjct: 3   PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATV 62

Query: 150 DNSMFPEVDS 159
            + M  EV +
Sbjct: 63  RDIMTTEVLT 72

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V + MT KE L  V   TT++EALE+L E RI   PV+DD+ +L GL+
Sbjct: 148 PVSEVMT-KERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLI 195

Length = 486

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 49.4 bits (119), Expect = 6e-09
 Identities = 19/42 (45%), Positives = 30/42 (71%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P TT++EALE+L E  I   PV+D++ +LVG+V+  D++
Sbjct: 4   TVSPDTTLEEALELLRENGIRRLPVVDEEGRLVGIVTRRDII 45

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V P T+V EA  ++++  I+G PV+DDD +LVG+VS+ DLL
Sbjct: 6   TVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLL 47

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT       + P     EALE++ E +IT  PV+DD+ + VG++  +DLL 
Sbjct: 60  PVADVMTRNP--KTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + PTTT+ EALE++ E +I   PV+D++ +LVG+V+D DL 
Sbjct: 6   ITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLR 46

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT       V P  +V+EA E+++E++I+G PV+DD  +LVG++++ DL 
Sbjct: 68  KVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLF 120

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 17/42 (40%), Positives = 31/42 (73%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VK   T+ + +EIL+  +I+G PV+D++ ++VG+VS+ DL+
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLI 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 50.4 bits (121), Expect = 7e-08
 Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V + MT +EE+  V     ++EAL++L E RI   PV+D + +LVGL++  D++ 
Sbjct: 145 VSEVMT-REEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVK 198

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D+M+T  ++  V P T + E  E++VE  I G   + +D +LVG+V+  DLL
Sbjct: 58  VKDYMST--DVVTVPPDTPLSEVQELMVEHDI-GRVPVVEDGRLVGIVTRTDLL 108

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           V   MTT E+L        +++  E++++ R   +PV+D+D K+VG++S Y LL+
Sbjct: 248 VSYIMTT-EDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLS 301

Length = 546

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 62  SSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV 121
              +  S      S         V + MT K  +  V   TT+++   I+ +K I   PV
Sbjct: 57  YVTLLYSVIFLDESKIKKLLGKKVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPV 114

Query: 122 IDDDWKLVGLVSDYDLL 138
           +DD  KLVG++S  D++
Sbjct: 115 VDDG-KLVGIISRGDII 130

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 16/46 (34%), Positives = 28/46 (60%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +  +    ++ +A E++ E RI   PV+++D KLVGL++  DLL 
Sbjct: 2   PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|235507 PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed

 Score = 48.7 bits (117), Expect = 3e-07
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P TT+ EAL ++    I+G PV+D++ KLVG++++ D+
Sbjct: 100 VTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDV 139

Length = 486

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++  V P  TV+EA  ++ E RI   PV++D  +LVG++++ DLL
Sbjct: 68  PVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVEDG-RLVGIITETDLL 119

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V + MT    +  V P  TVDEA+ ++ E+R    PV+D   KLVG+VS
Sbjct: 60  PVSEIMTRN--VITVTPDDTVDEAMALMTERRFRHLPVVDGG-KLVGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT  E+L       T++EA EIL E +I   P++DDD +LVGL++  D+ 
Sbjct: 142 KVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 65  VFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVID 123
           +     +    AA    +  V + MT    +  V P T ++EALE++VE  +I   PV+D
Sbjct: 44  IITERDILRALAAGGKRLLPVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVD 101

Query: 124 DD-WKLVGLVSDYDLL 138
           DD  KLVG+++  D+L
Sbjct: 102 DDGGKLVGIITLSDIL 117

Length = 117

>gnl|CDD|180842 PRK07107, PRK07107, inosine 5-monophosphate dehydrogenase; Validated

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV--SDYD 136
           V DFMT  E+L      TT+ EA +I+ + ++   P++D +  LV LV   DYD
Sbjct: 163 VKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYD 216

Length = 502

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 45.3 bits (108), Expect = 8e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + MT +E L V     T++EA EIL E +    P+++DD +LV LV+  DL 
Sbjct: 58  PLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLK 112

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVGD MT    +  V     VDEA  ++ E ++   PV+DDD +LVG+VS  DL 
Sbjct: 59  TVGDVMT--RGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLA 111

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240012 cd04641, CBS_pair_28, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 14/44 (31%), Positives = 31/44 (70%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
             +P T + + L++LVE+R++  P++D++ K+V + S +D++ L
Sbjct: 5   TARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 120

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V + MT +E+L V     +++EA E+L E R    P+++D+ +LV LVS  DL    
Sbjct: 160 PVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217

Length = 495

>gnl|CDD|240116 cd04803, CBS_pair_15, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M T   +  V P T + EA EI+VE +I   PV+DD   LVG+++  D L
Sbjct: 68  PVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           TV D MT  E+   ++ T TV++ L+++ +   + FPV++   K+VG+V+  D+L    S
Sbjct: 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKPS 248

Query: 143 IS 144
            +
Sbjct: 249 TT 250

Length = 432

>gnl|CDD|240008 cd04637, CBS_pair_24, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               MT       V P T VDEA ++L+E  I+  PV+D++ +L+G+++  DLL
Sbjct: 69  AHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT    +  ++P T+V +   +++E  I G PV+DD  KLVG+V+  D+L
Sbjct: 69  VSDIMT--RPVITIEPDTSVSDVASLMLENNIGGLPVVDDG-KLVGIVTRTDIL 119

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|225321 COG2524, COG2524, Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M+ K  L  V+P  T+ EA ++  EK I G PV+DDD K+VG+++  D+   
Sbjct: 173 KVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKA 226

Length = 294

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
                 T+ +A  +L E +I+G PV+D   KLVG+VS+ D+L L
Sbjct: 5   TCNADDTISDAARLLRENKISGAPVLDGG-KLVGIVSESDILKL 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 17/46 (36%), Positives = 27/46 (58%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           EE+  V+ T T+  AL +L +   +  PV+D + K VG +S  D+L
Sbjct: 1   EEVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDIL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 42.6 bits (101), Expect = 8e-06
 Identities = 13/41 (31%), Positives = 28/41 (68%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            +    ++ EA ++++E+ I   PV+D+D +LVG+V+ +D+
Sbjct: 6   TISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDI 46

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V D MT    +  V   T + E  E++ E RI   PV+    +LVG+VS  DLL 
Sbjct: 82  KVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVRGG-RLVGIVSRADLLR 134

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 19/55 (34%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            VG+ M+T   L  + P  +++EA +++ +  I   PV+DDD +LVG+V+  D++
Sbjct: 59  PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIV 110

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|240005 cd04634, CBS_pair_21, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 17/54 (31%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D MT  +++  + P  ++++A E++V  +I   PV++D  +LVG+V+  D++
Sbjct: 91  VRDIMT--KKVITISPDASIEDAAELMVRHKIKRLPVVEDG-RLVGIVTRGDII 141

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 143

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 48  VLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEA 107
             A   D    L + S                       D MT  EE+  V P   V +A
Sbjct: 46  AFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLVAEDIMT--EEIITVSPNDDVVDA 103

Query: 108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            ++++E  I+G PV+D+D  +VG+++  D+   
Sbjct: 104 AKLMLEANISGLPVVDND-NIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|239987 cd04614, CBS_pair_1, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 3e-05
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           SG+ T  D +  K E+      TTV E  + +   RI   P+I+ + KL+GL+ D+DLL
Sbjct: 37  SGIITERDLIA-KSEVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLL 94

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 96

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)

Query: 93  EELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDL 137
           + L +V P T++ +AL  +  K   +T   V+D+D +LVG+ +D DL
Sbjct: 2   DALPLVSPDTSLKDALLEMSRKGLGMTA--VVDEDGRLVGIFTDGDL 46

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 15/36 (41%), Positives = 25/36 (69%)

Query: 103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T D+ LE+L E +++G PV+    +LVG+++  DLL
Sbjct: 11  TRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLL 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            ++  V P  TV +A+E + E  ++  PV+DD  ++VG + + DLL
Sbjct: 1   GDVVSVAPDDTVSQAIERMREYGVSQLPVVDDG-RVVGSIDESDLL 45

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D     ++   V P T++ EA  ++ E  +   PV+D++ KL+GLVS  DL
Sbjct: 69  QVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDL 120

Length = 546

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.8 bits (94), Expect = 7e-05
 Identities = 17/45 (37%), Positives = 29/45 (64%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++  V+P  TV EA +++ EK I    V+DD  +LVG+ S+ D++
Sbjct: 2   DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIV 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240009 cd04638, CBS_pair_25, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P   V EA +++VE  I   PV+DD  KLVG+V+  D++ 
Sbjct: 64  TVSPDDDVKEAAKLMVENNIRRVPVVDDG-KLVGIVTVADIVR 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 106

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRAD 150
           ++  V    TVDE L ++  +R  G+PV+DD  +LVG+V    L  +  +   GR  
Sbjct: 2   DVVTVPVDLTVDEVLALMFGERHRGYPVVDDG-RLVGIV---TLADIRRVPAEGREA 54

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + L  + P  T+ EA  +     I G PV+DD  KLVG+V+  D+   
Sbjct: 1   KPLITLNPNATLREAARLFNTHHIHGAPVVDDG-KLVGIVTLSDIAHA 47

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 39.9 bits (94), Expect = 8e-05
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            V   MT           T V EAL ++V+ +    PV+D   ++VGL+ 
Sbjct: 59  LVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLD 106

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 17/57 (29%), Positives = 32/57 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           TV   MT   +L  V    ++ E L++L E+ +    V++D  +++GL+++ DLL  
Sbjct: 58  TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLRR 114

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           ++  V P T+++EA  +L   RI   PV+D D +LVG+V+  DLL 
Sbjct: 3   DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLR 48

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVS 133
            ++ D M   E++  V+P  ++ + L +++++     PV+D+D KLVGL++
Sbjct: 54  KSLEDIM--LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLIT 102

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            +   T ++E L+++       FPV+DDD +LVG+VS  D+  +
Sbjct: 5   TIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI 48

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239998 cd04626, CBS_pair_13, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +++  V    T+DEAL+I+ EK+I   PV+DD+ KL+G+V   D+L
Sbjct: 64  SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDDN-KLIGVVRTKDIL 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V P T++ EAL+++ E  I   PV+D   KLVG+V+D DL
Sbjct: 5   TVTPDTSLMEALKLMKENSIRRLPVVDRG-KLVGIVTDRDL 44

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239973 cd04600, CBS_pair_HPP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           TVGD M+    +  V+P T + E + +L +      PV+D+D +LVG+V+  DL+A
Sbjct: 70  TVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
              D MT      VV P  ++++AL+   +      PV+DDD  KL+G++S  DLL+
Sbjct: 59  VASDIMTKPPV--VVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240006 cd04635, CBS_pair_22, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   M+T   ++ V P  ++  A+E+++E  I   PV+++  +LVG+V  +D+L
Sbjct: 68  TVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVL 120

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 122

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            VG+ M++   L  V   T++ +A +++ E  I    V+DDD +L+GL+S  DLL 
Sbjct: 57  PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239981 cd04608, CBS_pair_PALP_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 38.8 bits (91), Expect = 2e-04
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V PT T  EA+EIL EK     PV+D+  K++G+V
Sbjct: 7   VLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMV 41

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 124

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 11/84 (13%)

Query: 91  TKEELHV-----VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG 145
           T ++LH+     V PT TV +A+EIL E      PV+ +  K++G V+  +LL+      
Sbjct: 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGK 395

Query: 146 SGRAD------NSMFPEVDSTWKV 163
           +   D      +  F ++    K+
Sbjct: 396 ANPDDAVSKVMSKKFIQIGEGEKL 419

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|239971 cd04598, CBS_pair_GGDEF_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 93  EELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYDLLAL 140
                V P TTV++ LE       ++   V+DD  + VGL+    L+ L
Sbjct: 1   RPAPTVSPDTTVNDVLERFERDPDLSALAVVDDG-RPVGLIMREALMEL 48

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 119

>gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
             V P  TV + ++++ E    GFPV+D+  K+VG+VS  DLL  D
Sbjct: 5   ITVSPDNTVKDVIKLIKETGHDGFPVVDNG-KVVGIVSARDLLGKD 49

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107

>gnl|CDD|239975 cd04602, CBS_pair_IMPDH_2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVS--DYDLL 138
            V+ P  TV + LEI  +K  +G PV +D     KL+G+V+  D D L
Sbjct: 5   SVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFL 52

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. Length = 114

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 75  SAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK----RITGFPVIDDDWKLVG 130
           S A +    +V D MT      V+  T T DE +++   K     I+  PV+D + +++G
Sbjct: 47  SKAVARDKKSVEDIMTRN----VI--TATPDEPIDVAARKMERHNISALPVVDAENRVIG 100

Query: 131 LVSDYDLLAL 140
           +++  D+  L
Sbjct: 101 IITSEDISKL 110

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           VGD MT         P  T+ +AL+ + E+ I   PV+DD  +LVG+VS  DLL
Sbjct: 58  VGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLL 109

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 3/59 (5%)

Query: 81  GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           GV TV D MTT  E+  V P  ++ +  +++++ +   +PV+DD  KLVG +S  D+L 
Sbjct: 58  GVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDDG-KLVGQISRRDVLR 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 13/44 (29%), Positives = 26/44 (59%)

Query: 94  ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           ++  +     V +A +++ +  I+G PV+D+  KL+G +S  DL
Sbjct: 2   KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDL 45

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            V DFMT   +    K    + EALE L  ++IT   V+DD  K++G++
Sbjct: 221 EVRDFMTLGPK--TFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD 141
           TV + MT + ++  +  T TV+E +E+++E   +  PV D D   ++G+V   DLL   
Sbjct: 207 TVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRAL 265

Length = 429

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 12/43 (27%), Positives = 27/43 (62%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            V P T++ EA +++ E+ +    V+D D + +G+V++ D++ 
Sbjct: 5   TVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVR 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|233350 TIGR01302, IMP_dehydrog, inosine-5'-monophosphate dehydrogenase

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            + P TTV + LE++  K I+G PV++D     KLVG+++  D+ 
Sbjct: 92  TISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIR 136

This model describes IMP dehydrogenase, an enzyme of GMP biosynthesis. This form contains two CBS domains. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 450

>gnl|CDD|225979 COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms]

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   T++D A ++L E RI   PV+D+  +LVG+V+  DLL
Sbjct: 258 VSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLL 298

Length = 382

>gnl|CDD|240355 PTZ00314, PTZ00314, inosine-5'-monophosphate dehydrogenase; Provisional

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDLLALDSIS 144
           V+ P  TV + LEI  +K  +   +  D     KL+G+V+  D+  +   S
Sbjct: 108 VLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVKDKS 158

Length = 495

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 81  GVYTVGDF---------MTTKEELHVVKPTTT------VDEALEILVEKRITGFPVIDDD 125
           GV+T GD          +TT     + +  TT        +A EIL++++IT  PV+D++
Sbjct: 244 GVFTDGDLRRWLVGGGALTTPVNEAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDEN 303

Query: 126 WKLVGLVSDYDL 137
            KL G ++  D 
Sbjct: 304 GKLTGAINLQDF 315

Length = 321

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 16/42 (38%), Positives = 25/42 (59%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V+  TT + EA E L+E +     V+D D  +VG+++  DLL
Sbjct: 5   VLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLL 46

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 97  VVKPTTTVDEALEIL-----VEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V+   TV EALE L       + I    V+D++ +L+G+VS  DLL
Sbjct: 1   AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLL 47

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|215154 PLN02274, PLN02274, inosine-5'-monophosphate dehydrogenase

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 13/53 (24%), Positives = 30/53 (56%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT+ ++L        ++EA  +L + +    P++++D +LV LV+  D+
Sbjct: 165 LSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDV 217

Length = 505

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.7 bits (83), Expect = 0.003
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW-KLVGLVSDYDLLA 139
            V PTT + EA +I+V       PV+D+   KLVG+++  D+L 
Sbjct: 5   TVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239982 cd04609, CBS_pair_PALP_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            V + M     L  V P   ++E  E+L    +    V+D+  K VG+++  DLL  
Sbjct: 58  PVREVMGEP--LPTVDPDAPIEELSELLDRGNVA--VVVDEGGKFVGIITRADLLKY 110

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239969 cd04596, CBS_pair_DRTGG_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 26/46 (56%)

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           E+   +  T TV +  E+  E   + FPV+D+  K+VG+V+  D+ 
Sbjct: 2   EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVA 47

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 108

>gnl|CDD|239970 cd04597, CBS_pair_DRTGG_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +P   + EAL ++ E  I   PV+DDD    G+++  DL
Sbjct: 72  RPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDL 110

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.2 bits (81), Expect = 0.003
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
             V   T +  A+  +        PV+DD  +LVG+++ YD+L+
Sbjct: 4   SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS 47

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.09
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.88
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.79
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.78
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.67
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.65
COG2524	294	Predicted transcriptional regulator, contains C-te	98.65
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.65
PRK11573	413	hypothetical protein; Provisional	98.64
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.62
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.62
COG1253	429	TlyC Hemolysins and related proteins containing CB	98.6
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.58
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.58
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.58
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.56
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.55
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.54
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.53
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.53
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.53
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.53
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.52
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.52
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.52
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.52
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.51
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.51
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.5
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.48
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.47
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.47
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.46
COG2524	294	Predicted transcriptional regulator, contains C-te	98.46
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.46
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.44
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.44
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.44
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.44
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.43
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.41
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.41
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.4
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.4
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.4
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.39
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.39
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.39
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.38
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.36
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.35
COG3620	187	Predicted transcriptional regulator with C-termina	98.35
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.34
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.34
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.34
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.34
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.34
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.33
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.33
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.32
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.3
COG4109	432	Predicted transcriptional regulator containing CBS	98.3
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.28
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.28
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	98.27
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.23
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.22
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.2
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.2
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.2
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.19
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.19
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.19
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.19
COG0517	117	FOG: CBS domain [General function prediction only]	98.18
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.18
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.17
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.17
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.17
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.16
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.16
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.13
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.13
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.13
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.13
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.13
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.12
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.1
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.1
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	98.1
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.1
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.1
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.08
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.08
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.06
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.05
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.05
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.02
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.01
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.0
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.0
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.0
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.99
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.98
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.98
COG4109	432	Predicted transcriptional regulator containing CBS	97.98
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.97
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.94
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.93
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.92
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.91
COG2905	610	Predicted signal-transduction protein containing c	97.91
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.9
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.9
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.9
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.87
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.86
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.84
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.83
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.82
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.81
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.8
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	97.8
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.8
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.79
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.79
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.75
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.75
COG2905	610	Predicted signal-transduction protein containing c	97.75
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.75
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.74
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.74
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.74
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.73
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.72
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.72
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.71
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.7
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.67
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.67
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.66
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.66
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.66
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.64
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.64
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.62
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.62
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.6
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.58
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	97.58
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.57
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.56
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.54
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.52
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.5
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.48
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.48
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.48
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.47
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.47
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.45
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.43
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.41
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.41
COG0517	117	FOG: CBS domain [General function prediction only]	97.4
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.4
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.39
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.39
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.39
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.35
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.33
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.32
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.29
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.22
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.2
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.18
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	96.98
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.93
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	96.9
COG3620	187	Predicted transcriptional regulator with C-termina	96.85
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.77
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.72
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.67
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	95.71
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	95.58
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	95.55
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	95.37
PRK11573	413	hypothetical protein; Provisional	95.33
COG1253	429	TlyC Hemolysins and related proteins containing CB	94.66
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	93.41
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	92.16
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	91.79
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	90.68
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	89.73
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	87.12
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	86.23
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	85.72
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	83.19
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	81.49

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.09  E-value=3.4e-11  Score=76.76  Aligned_cols=54  Identities=46%  Similarity=0.722  Sum_probs=50.8

Q ss_pred             ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      |+++|++  ++.++.+++++.++++.|.+++++.+||+|++|+++|++|.+||+++
T Consensus         1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred             CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhh
Confidence            5789999  99999999999999999999999999999989999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.88  E-value=1.2e-09  Score=77.88  Aligned_cols=84  Identities=19%  Similarity=0.192  Sum_probs=63.6

Q ss_pred             cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV  132 (172)
                      +++++..++..|.++.+.+... ........++.++|..  ++.++.+++++.+++++|.+++.+.+||+|++|+++|+|
T Consensus        27 ~~V~d~~~~~~G~v~~~dl~~~-~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Gii  103 (111)
T cd04603          27 VVVVDEENKVLGQVTLSDLLEI-GPNDYETLKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTI  103 (111)
T ss_pred             EEEEcCCCCEEEEEEHHHHHhh-ccccccccChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEE
Confidence            4445544555566655554321 1112233569999988  888999999999999999999999999999889999999


Q ss_pred             eccceee
Q 030753          133 SDYDLLA  139 (172)
Q Consensus       133 t~~Dll~  139 (172)
                      |.+|+++
T Consensus       104 t~~di~~  110 (111)
T cd04603         104 YERELLR  110 (111)
T ss_pred             EhHHhhc
Confidence            9999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.79  E-value=2.7e-09  Score=76.33  Aligned_cols=87  Identities=13%  Similarity=0.263  Sum_probs=67.0

Q ss_pred             cccchhhhhccCceeeecCceeccCC--CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      .++++++..+...+.+....+.....  .......+++++|..  ++.++.+++++.++++.|.+++...+||+|++|++
T Consensus        25 ~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~  102 (114)
T cd04619          25 DLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARP  102 (114)
T ss_pred             CEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcE
Confidence            34556665666666665555442211  112344678999988  89999999999999999999999999999977899


Q ss_pred             EEEeeccceee
Q 030753          129 VGLVSDYDLLA  139 (172)
Q Consensus       129 vGIVt~~Dll~  139 (172)
                      +|+|+.+|+++
T Consensus       103 ~Gvi~~~dl~~  113 (114)
T cd04619         103 LGVLNARDALK  113 (114)
T ss_pred             EEEEEhHhhcc
Confidence            99999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.78  E-value=4.1e-09  Score=92.97  Aligned_cols=92  Identities=16%  Similarity=0.161  Sum_probs=72.4

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC----CCCCCCC
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG----SGRADNS  152 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~----~~~~~~~  152 (172)
                      .++.+.+|+|+|+++.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++.......    ....+..
T Consensus       186 l~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~~~~l~~~~~~~~  265 (408)
T TIGR03520       186 VSFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKKNFDWQSLLREPY  265 (408)
T ss_pred             hccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccCCCCHHHHcCCCe
Confidence            366888999999999899999999999999999999999999999865 79999999999985332111    1223444


Q ss_pred             CCcCccchhhhhhhhcc
Q 030753          153 MFPEVDSTWKVYIQRGA  169 (172)
Q Consensus       153 m~~~~~~l~~~l~~i~~  169 (172)
                      +.++-.++.+.++++|+
T Consensus       266 ~Vpe~~~l~~ll~~m~~  282 (408)
T TIGR03520       266 FVPENKKLDDLLRDFQE  282 (408)
T ss_pred             EeCCCCcHHHHHHHHHh
Confidence            56666677777776654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.67  E-value=1.4e-08  Score=72.95  Aligned_cols=57  Identities=37%  Similarity=0.622  Sum_probs=52.2

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|.+  ++.++.+++++.+++++|.+++.+.+||+|++|+++|+++..|+++
T Consensus        67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            34578999988  8999999999999999999999999999998899999999999875

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.65  E-value=1.3e-08  Score=73.19  Aligned_cols=88  Identities=20%  Similarity=0.264  Sum_probs=63.0

Q ss_pred             ccchhhhhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---cc
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WK  127 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~  127 (172)
                      ++++++..+...+.+....+..... .......+++++|...+++.++.+++++.+++++|.++++..+||+|++   |+
T Consensus        26 ~~~V~d~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~  105 (118)
T cd04617          26 SLFVVDEDGDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLE  105 (118)
T ss_pred             EEEEEcCCCCEEEEEEHHHHHHHHHcCCCccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccce
Confidence            3444444444455555444333221 1223456788899732267899999999999999999999999999876   69


Q ss_pred             EEEEeeccceee
Q 030753          128 LVGLVSDYDLLA  139 (172)
Q Consensus       128 lvGIVt~~Dll~  139 (172)
                      ++|+||..|+.+
T Consensus       106 l~Gvit~~~l~~  117 (118)
T cd04617         106 VIGRITKTNITK  117 (118)
T ss_pred             EEEEEEhhheec
Confidence            999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.65  E-value=1.3e-08  Score=84.51  Aligned_cols=78  Identities=29%  Similarity=0.403  Sum_probs=67.7

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC-CCCCCCCCCcCc
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG-SGRADNSMFPEV  157 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~-~~~~~~~m~~~~  157 (172)
                      .....+|+++|++  +++++.+++++++++.++.+++++..||+|+ ++++|++|..|+..+..... ...++++|.+++
T Consensus       168 siPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~-dk~vGiit~~dI~~aia~g~~~~kV~~~M~k~v  244 (294)
T COG2524         168 SIPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD-DKIVGIITLSDIAKAIANGNLDAKVSDYMRKNV  244 (294)
T ss_pred             ecCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC-CceEEEEEHHHHHHHHHcCCccccHHHHhccCC
Confidence            3466789999999  9999999999999999999999999999995 59999999999997766544 677888888866


Q ss_pred             cc
Q 030753          158 DS  159 (172)
Q Consensus       158 ~~  159 (172)
                      .+
T Consensus       245 it  246 (294)
T COG2524         245 IT  246 (294)
T ss_pred             ce
Confidence            33

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.65  E-value=1.3e-08  Score=72.26  Aligned_cols=56  Identities=27%  Similarity=0.440  Sum_probs=51.1

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|.+  .+.++.+++++.++++.|.+++...+||+|++|+++|+|+.+|++.
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          57 DDPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            3468999988  8889999999999999999999999999997899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11573 hypothetical protein; Provisional

Probab=98.64  E-value=1.9e-08  Score=88.99  Aligned_cols=92  Identities=12%  Similarity=0.065  Sum_probs=72.5

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC--------CCC
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------SGR  148 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~--------~~~  148 (172)
                      .++.+.+|+++|+|+.++.+++.+++++++++.+.+++++++||++++ ++++|+|+.+|++.......        ...
T Consensus       182 l~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~~~~~~l~~~~  261 (413)
T PRK11573        182 LDLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKENMLRAA  261 (413)
T ss_pred             hccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCcCCHHHHHhhc
Confidence            367889999999999999999999999999999999999999999865 89999999999985322111        112


Q ss_pred             CCCCCCcCccchhhhhhhhcc
Q 030753          149 ADNSMFPEVDSTWKVYIQRGA  169 (172)
Q Consensus       149 ~~~~m~~~~~~l~~~l~~i~~  169 (172)
                      .+..++|+-.++.+.|+++|+
T Consensus       262 r~~~~Vpe~~~l~~lL~~~~~  282 (413)
T PRK11573        262 DEIYFVPEGTPLSTQLVKFQR  282 (413)
T ss_pred             cCCeEeCCCCcHHHHHHHHHh
Confidence            344556766677666666643

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.62  E-value=3.1e-08  Score=83.83  Aligned_cols=92  Identities=22%  Similarity=0.327  Sum_probs=69.8

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC------CCCCC
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG------SGRAD  150 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~------~~~~~  150 (172)
                      ..+...+|+++|+++.++.++.++++++++++.+.+++++++||++++ ++++|+|+.+|++.......      .....
T Consensus        62 l~l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~~~~l~~l~r~  141 (292)
T PRK15094         62 MDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQ  141 (292)
T ss_pred             hccCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCCcCCHHHHcCC
Confidence            356788999999998889999999999999999999999999999876 78999999999985332111      11222


Q ss_pred             CCCCcCccchhhhhhhhcc
Q 030753          151 NSMFPEVDSTWKVYIQRGA  169 (172)
Q Consensus       151 ~~m~~~~~~l~~~l~~i~~  169 (172)
                      ..+.+.-.++.+.|+.+++
T Consensus       142 ~~~V~e~~~l~~~L~~m~~  160 (292)
T PRK15094        142 AVVVPESKRVDRMLKEFRS  160 (292)
T ss_pred             CcCcCCCCcHHHHHHHHHh
Confidence            3344455566666666543

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.62  E-value=2.4e-08  Score=70.98  Aligned_cols=87  Identities=24%  Similarity=0.308  Sum_probs=63.8

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..++..|.++...+..... ......++.++|.+...+.++.+++++.++++.|.+++.+.+||+|++|+++|+
T Consensus        27 ~~~V~d~~~~~~G~v~~~dl~~~~~-~~~~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gv  105 (114)
T cd04801          27 RFVVVDNEGRYVGIISLADLRAIPT-SQWAQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGL  105 (114)
T ss_pred             eEEEEcCCCcEEEEEEHHHHHHHHH-hhccccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEE
Confidence            3455555555556665555433221 112345788999752246689999999999999999999999999977899999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ++.+|+++
T Consensus       106 l~~~di~~  113 (114)
T cd04801         106 ITEADLLR  113 (114)
T ss_pred             Eeccceec
Confidence            99999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=98.60  E-value=4.2e-08  Score=87.01  Aligned_cols=91  Identities=24%  Similarity=0.231  Sum_probs=72.5

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC--C----CCCC
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--S----GRAD  150 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~--~----~~~~  150 (172)
                      ..+++.+|+++|+||+++.+++.+.+.+++.+.+.+++++++||++++ +.++|+++.+|++.......  .    ....
T Consensus       201 ~~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~~~~~~~~~~~  280 (429)
T COG1253         201 LDLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQSDLDLRVLVRP  280 (429)
T ss_pred             hccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCccccchhhcccC
Confidence            467889999999999999999999999999999999999999999943 89999999999996544432  1    1225


Q ss_pred             CCCCcCccchhhhhhhhc
Q 030753          151 NSMFPEVDSTWKVYIQRG  168 (172)
Q Consensus       151 ~~m~~~~~~l~~~l~~i~  168 (172)
                      ..++|+...+.+.|+++|
T Consensus       281 ~~~Vpet~~~~~lL~~~r  298 (429)
T COG1253         281 PLFVPETLSLSDLLEEFR  298 (429)
T ss_pred             CeEecCCCcHHHHHHHHH
Confidence            555666666666555554

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.58  E-value=2.1e-08  Score=70.89  Aligned_cols=86  Identities=17%  Similarity=0.280  Sum_probs=64.5

Q ss_pred             ccchhhhhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      .+++++..++..+.+....+..... .......++.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|
T Consensus        26 ~~~vvd~~~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~G  103 (113)
T cd04615          26 ALPVVDDKKRLVGIITRYDVLSYALESEELKDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGG  103 (113)
T ss_pred             eEeEEcCCCCEEEEEEHHHHHHhhhhhhhhcCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEE
Confidence            4555655445555555544432211 112244678999988  8899999999999999999999999999998889999


Q ss_pred             Eeeccceee
Q 030753          131 LVSDYDLLA  139 (172)
Q Consensus       131 IVt~~Dll~  139 (172)
                      +++..|+++
T Consensus       104 vvt~~dl~~  112 (113)
T cd04615         104 IVTEDDILR  112 (113)
T ss_pred             EEEHHHhhc
Confidence            999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.58  E-value=2.9e-08  Score=70.06  Aligned_cols=81  Identities=25%  Similarity=0.364  Sum_probs=62.9

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..++..+.+....+...     ....++.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+
T Consensus        27 ~~~V~d~~~~~~G~v~~~~l~~~-----~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~   99 (108)
T cd04596          27 RFPVVDEKNKVVGIVTSKDVAGK-----DPDTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGI   99 (108)
T ss_pred             ceeEECCCCeEEEEecHHHHhcc-----cccccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEE
Confidence            45555554555555544443321     134579999988  88999999999999999999999999999988999999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ++.+|+++
T Consensus       100 it~~di~~  107 (108)
T cd04596         100 ISRQDVLK  107 (108)
T ss_pred             EEHHHhhc
Confidence            99999874

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.58  E-value=1.8e-08  Score=85.38  Aligned_cols=88  Identities=24%  Similarity=0.299  Sum_probs=68.1

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      ++++++..++..|.++...+...-........++.++|.+  ++.++.+++++.++++.|.++++..+||+|++|+++|+
T Consensus       232 ~~~Vvd~~g~~iG~vt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGv  309 (321)
T PRK11543        232 LVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTR--GGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGA  309 (321)
T ss_pred             EEEEEcCCCcEEEEecHHHHHHHHhCCCCcCCcHHHhcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEE
Confidence            5666776666666665444432111122234568999998  89999999999999999999999999999987899999


Q ss_pred             eeccceeeee
Q 030753          132 VSDYDLLALD  141 (172)
Q Consensus       132 Vt~~Dll~~~  141 (172)
                      |+.+|++++.
T Consensus       310 It~~di~~~~  319 (321)
T PRK11543        310 INLQDFYQAG  319 (321)
T ss_pred             EEHHHHHhcc
Confidence            9999998653

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=4.7e-08  Score=70.02  Aligned_cols=87  Identities=23%  Similarity=0.363  Sum_probs=66.7

Q ss_pred             cccchhhhhccCceeeecCceeccCCC----CC------CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcc
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA----PS------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP  120 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~----~~------~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lP  120 (172)
                      .++++++..++..+.+....++.....    ..      ....++.++|.+  ++.++.+++++.++++.|.+++...+|
T Consensus        25 ~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~  102 (122)
T cd04635          25 TGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLP  102 (122)
T ss_pred             CcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeee
Confidence            355666655666666666665432110    01      235578899987  889999999999999999999999999


Q ss_pred             eecCCccEEEEeeccceee
Q 030753          121 VIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus       121 Vvd~~~~lvGIVt~~Dll~  139 (172)
                      |+|++|+++|+++.+|+++
T Consensus       103 Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635         103 VVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             EEcCCCcEEEEEEhHHhhc
Confidence            9998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=3e-08  Score=70.43  Aligned_cols=86  Identities=21%  Similarity=0.337  Sum_probs=62.5

Q ss_pred             cccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeeccc--ccHHHHHHHHHHhhhcCcceecCCcc
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPT--TTVDEALEILVEKRITGFPVIDDDWK  127 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~--~sl~eal~~m~~~~i~~lPVvd~~~~  127 (172)
                      +++++.+. ++..+.+....+...... ......++.++|.+  ++.++.++  +++.+++++|.+++...+||+|++|+
T Consensus        26 ~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~  102 (115)
T cd04620          26 SCVLVVEK-GRLLGIFTERDIVRLTAIGKDLSDLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQ  102 (115)
T ss_pred             ceEEEcCC-CcEEEEEeHHHHHHHHhcCCCccccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCC
Confidence            44555553 445566655554421111 11124578899988  78888877  68999999999999999999998899


Q ss_pred             EEEEeeccceee
Q 030753          128 LVGLVSDYDLLA  139 (172)
Q Consensus       128 lvGIVt~~Dll~  139 (172)
                      ++|+||.+|+++
T Consensus       103 ~~Gvit~~dl~~  114 (115)
T cd04620         103 LIGLVTAESIRQ  114 (115)
T ss_pred             EEEEEEhHHhhc
Confidence            999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.54  E-value=4.1e-08  Score=69.14  Aligned_cols=86  Identities=27%  Similarity=0.360  Sum_probs=65.3

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCC-CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC-CccEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLV  129 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~-~~~lv  129 (172)
                      .+++++..++..+.+....+........ ....++.++|.+  ++.++.+++++.++++.|.+.+...+||+|+ +++++
T Consensus        26 ~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~  103 (114)
T cd04613          26 NFPVVDDDGRLVGIVSLDDIREILFDPSLYDLVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLL  103 (114)
T ss_pred             ceeEECCCCCEEEEEEHHHHHHHHhcccccccEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEE
Confidence            3455555555556665555543222111 233789999988  8999999999999999999999999999987 78999


Q ss_pred             EEeeccceee
Q 030753          130 GLVSDYDLLA  139 (172)
Q Consensus       130 GIVt~~Dll~  139 (172)
                      |+++.+|++.
T Consensus       104 Gvvt~~di~~  113 (114)
T cd04613         104 GILSRSDLLS  113 (114)
T ss_pred             EEEEhHHhhc
Confidence            9999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=4.6e-08  Score=69.09  Aligned_cols=85  Identities=27%  Similarity=0.308  Sum_probs=62.6

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..++..+.+....+............++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|+
T Consensus        26 ~~~v~d~~~~~~G~v~~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~  102 (111)
T cd04626          26 EIIVKDNEEKLKGVVTFTDILDLDLFESFLEKKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGV  102 (111)
T ss_pred             eEEEEcCCCCEEEEEehHHhHHHHhhcccccCcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEE
Confidence            4455554455556665555432211111123478899988  8889999999999999999999999999996 899999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ||..|++.
T Consensus       103 it~~di~~  110 (111)
T cd04626         103 VRTKDILD  110 (111)
T ss_pred             EEhHHhcc
Confidence            99999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.53  E-value=8.3e-08  Score=67.26  Aligned_cols=82  Identities=28%  Similarity=0.347  Sum_probs=60.9

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecc-cccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKP-TTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~-~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      .+++++..++..+.++...+....    ....++.++|..  .+..+.+ ++++.++++.|.+.+...+||+|++|+++|
T Consensus        27 ~~~V~d~~~~~~G~v~~~~l~~~~----~~~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G  100 (110)
T cd04601          27 GLPVVDDDGKLVGIVTNRDLRFET----DLDKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKG  100 (110)
T ss_pred             eEEEEcCCCEEEEEEEhhHeeecc----cCCCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEE
Confidence            445555445555555544443211    134578899977  6666666 999999999999999999999998899999


Q ss_pred             Eeeccceee
Q 030753          131 LVSDYDLLA  139 (172)
Q Consensus       131 IVt~~Dll~  139 (172)
                      +|+.+|+++
T Consensus       101 vi~~~dil~  109 (110)
T cd04601         101 LITVKDIEK  109 (110)
T ss_pred             EEEhhhhhc
Confidence            999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.53  E-value=4.2e-08  Score=69.24  Aligned_cols=55  Identities=29%  Similarity=0.379  Sum_probs=50.6

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .++.++|.+  ++.++.+++++.++++.|.+++...+||++++++++|+|+.+|++.
T Consensus        58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            578899987  8889999999999999999999999999997799999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.53  E-value=6.5e-08  Score=68.27  Aligned_cols=45  Identities=22%  Similarity=0.370  Sum_probs=42.2

Q ss_pred             eeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceee
Q 030753           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLA  139 (172)
Q Consensus        95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~  139 (172)
                      +.++.+++++.+++++|.++++.++||+|++ |+++|++|.+|++.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            6789999999999999999999999999987 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=3.3e-08  Score=69.69  Aligned_cols=85  Identities=21%  Similarity=0.265  Sum_probs=63.1

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..+...|.+....+...-. ......++.++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+
T Consensus        26 ~~~V~~~~~~~~G~v~~~~l~~~~~-~~~~~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~  102 (111)
T cd04639          26 EFPVVDGDGHLVGLLTRDDLIRALA-EGGPDAPVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGL  102 (111)
T ss_pred             cceEECCCCcEEEEeeHHHHHHHHH-hcCCCCcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEE
Confidence            4555555455555554444432111 11233478999988  89999999999999999999999999999977999999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ++.+|+..
T Consensus       103 it~~dl~~  110 (111)
T cd04639         103 VTLENVGE  110 (111)
T ss_pred             EEHHHhhc
Confidence            99999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.52  E-value=4.5e-08  Score=68.53  Aligned_cols=81  Identities=21%  Similarity=0.350  Sum_probs=60.6

Q ss_pred             cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV  132 (172)
                      +++++..++..|.+....+....    ....++.++|.+  ++.++.+++++.++++.|.+.+...+||++++|+++|++
T Consensus        28 ~~v~d~~~~~~G~v~~~dl~~~~----~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvi  101 (109)
T cd04583          28 LLVVDKDNKLLGIVSLESLEQAY----KEAKSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLI  101 (109)
T ss_pred             EEEEcCCCcEEEEEEHHHHHHHh----hcCCcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEE
Confidence            34444444444555444432211    123468899988  889999999999999999999999999999889999999


Q ss_pred             eccceee
Q 030753          133 SDYDLLA  139 (172)
Q Consensus       133 t~~Dll~  139 (172)
                      +.+|+++
T Consensus       102 t~~~l~~  108 (109)
T cd04583         102 TRSSLVD  108 (109)
T ss_pred             ehHHhhc
Confidence            9999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.52  E-value=4.2e-08  Score=72.13  Aligned_cols=55  Identities=38%  Similarity=0.498  Sum_probs=50.8

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+| +|+++|+++.+|+++
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4578999988  899999999999999999999999999999 799999999999875

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=4.3e-08  Score=69.20  Aligned_cols=86  Identities=27%  Similarity=0.300  Sum_probs=64.6

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      ++++.+..++..+.+....+............++.++|.+  ++.++.+++++.++++.|.+++...+||++++|+++|+
T Consensus        26 ~~~v~d~~~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gi  103 (112)
T cd04624          26 SVVVVDPDERPIGIVTERDIVRAVAAGIDLDTPVSEIMTR--DLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGV  103 (112)
T ss_pred             EEEEECCCCCEEEEeeHHHHHHHHhccCCCccCHHHhccC--CCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEE
Confidence            4555555555566665555533222222234578899988  88999999999999999999999999999977999999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ++..|+++
T Consensus       104 lt~~dl~~  111 (112)
T cd04624         104 ISIRDLVR  111 (112)
T ss_pred             EEHHHhcc
Confidence            99999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.51  E-value=6.3e-08  Score=81.97  Aligned_cols=59  Identities=37%  Similarity=0.643  Sum_probs=56.2

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...+.+..|||++  +++++.+++++.++.++|.++++..+||+|++.+++|||+.+|+.+
T Consensus       241 ~~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~  299 (382)
T COG3448         241 RMGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLK  299 (382)
T ss_pred             HhccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhh
Confidence            4577899999999  9999999999999999999999999999999999999999999986

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.51  E-value=5.7e-08  Score=70.29  Aligned_cols=55  Identities=29%  Similarity=0.482  Sum_probs=51.2

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .+++++|.+  ++.++.+++++.++++.|.+.++..+||+|++|+++|+|+.+|+.+
T Consensus        58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            679999998  8899999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.50  E-value=4.2e-08  Score=69.19  Aligned_cols=86  Identities=30%  Similarity=0.423  Sum_probs=62.9

Q ss_pred             ccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      .+++++..++..+.+....+...-.. ......++.++|.+  ++.++.+++++.+++++|.+++...+||++++++++|
T Consensus        27 ~~~v~d~~~~~~G~v~~~~i~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG  104 (114)
T cd04604          27 MTAVVDEDGRLVGIFTDGDLRRALEKGLDILTLPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDNGRPVG  104 (114)
T ss_pred             EEEEEcCCCCEEEEechHHHHHHHhccCccccCCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEE
Confidence            44555554555555543333321111 11233479999988  8889999999999999999999999999997899999


Q ss_pred             Eeeccceee
Q 030753          131 LVSDYDLLA  139 (172)
Q Consensus       131 IVt~~Dll~  139 (172)
                      +|+.+||++
T Consensus       105 ~it~~di~~  113 (114)
T cd04604         105 VLHIHDLLR  113 (114)
T ss_pred             EEEHHHhhc
Confidence            999999875

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.48  E-value=7.3e-08  Score=68.58  Aligned_cols=85  Identities=19%  Similarity=0.263  Sum_probs=62.2

Q ss_pred             cchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--ccEE
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLV  129 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~lv  129 (172)
                      +++++..++..+.+....+....... .....++.++|..  ++.++.+++++.+++++|.+++...+||+|++  |+++
T Consensus        27 ~~V~d~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~  104 (115)
T cd04593          27 ALVVDRDGGVVGIITLPDLLRALEADEAGEPSAVDEVATP--PLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVL  104 (115)
T ss_pred             EEEEcCCCCEEEEEEHHHHHHHHhcccccccccHHHhccC--CceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEE
Confidence            34455445555555444433211111 1123458889988  89999999999999999999999999999876  7999


Q ss_pred             EEeeccceee
Q 030753          130 GLVSDYDLLA  139 (172)
Q Consensus       130 GIVt~~Dll~  139 (172)
                      |+|+.+|+++
T Consensus       105 Gvit~~di~~  114 (115)
T cd04593         105 GLLTRENVLL  114 (115)
T ss_pred             EEEEhHHhhc
Confidence            9999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.47  E-value=5.1e-08  Score=82.91  Aligned_cols=87  Identities=22%  Similarity=0.231  Sum_probs=66.9

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++++++..++..|.++...+....... .....+|+++|++  ++.++.+++++.+++++|.++++..+||++ +++++
T Consensus       236 ~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lv  312 (326)
T PRK10892        236 GMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTP--GGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLL  312 (326)
T ss_pred             CeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCC--CCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEE
Confidence            3455556566666777655543211111 2345689999999  999999999999999999999999999998 58999


Q ss_pred             EEeeccceeee
Q 030753          130 GLVSDYDLLAL  140 (172)
Q Consensus       130 GIVt~~Dll~~  140 (172)
                      |+||.+|+++.
T Consensus       313 Giit~~dil~~  323 (326)
T PRK10892        313 GVLHMHDLLRA  323 (326)
T ss_pred             EEEEhHHhHhc
Confidence            99999999864

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.47  E-value=8e-08  Score=67.43  Aligned_cols=86  Identities=30%  Similarity=0.423  Sum_probs=62.6

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      +.+++++. +...+.+....+............++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|
T Consensus        25 ~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G  101 (111)
T cd04612          25 RGYPVVDD-GRLVGIVTLADIRRVPAEGREATVLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVG  101 (111)
T ss_pred             CcceEeeC-CeEEEEEEHHHHHHHHhcCcccccCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEE
Confidence            34555554 44455554444432211111112367889988  8999999999999999999999999999987799999


Q ss_pred             Eeeccceee
Q 030753          131 LVSDYDLLA  139 (172)
Q Consensus       131 IVt~~Dll~  139 (172)
                      +++..|+.+
T Consensus       102 ~it~~di~~  110 (111)
T cd04612         102 IVSRSDLLR  110 (111)
T ss_pred             EEEHHHhhh
Confidence            999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.46  E-value=7.7e-08  Score=67.51  Aligned_cols=85  Identities=28%  Similarity=0.343  Sum_probs=62.1

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++. ++..|.+....+............++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+
T Consensus        26 ~~~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gv  102 (111)
T cd04611          26 SIVVVDD-GRPLGIVTERDILRLLASGPDLQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGL  102 (111)
T ss_pred             EEEEeeC-CEEEEEEeHHHHHHHHhcCCCCCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEE
Confidence            3444443 44445554444432221111145678999988  88999999999999999999999999999987999999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ++.+|+++
T Consensus       103 i~~~di~~  110 (111)
T cd04611         103 LSQTDLLQ  110 (111)
T ss_pred             EEhHHhhc
Confidence            99999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.46  E-value=6.1e-08  Score=69.00  Aligned_cols=85  Identities=18%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             ccchhhhh-ccCceeeecCceeccCCC--CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           52 SSDRVSAL-RRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        52 ~~~~~~~~-~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      ++++++.. +...|.+..+.+...-..  ......++.++|..  ++.++.+++++.++++.|.+++...+||+|+ |++
T Consensus        26 ~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~  102 (114)
T cd04630          26 SLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN-NEL  102 (114)
T ss_pred             EEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEE
Confidence            34444444 455566655555432111  12234678999987  8999999999999999999999999999986 999


Q ss_pred             EEEeeccceee
Q 030753          129 VGLVSDYDLLA  139 (172)
Q Consensus       129 vGIVt~~Dll~  139 (172)
                      +|+|+.+|+++
T Consensus       103 ~Gvi~~~dl~~  113 (114)
T cd04630         103 IGIISLTDIFL  113 (114)
T ss_pred             EEEEEHHHhhc
Confidence            99999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.46  E-value=6e-08  Score=80.52  Aligned_cols=60  Identities=18%  Similarity=0.315  Sum_probs=56.0

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ..+.+|+|+|.+  ++++++.++.+.||+++|..++++++.|+|.+|+++||+|+.|++...
T Consensus       231 ~~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~i  290 (294)
T COG2524         231 NLDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRI  290 (294)
T ss_pred             CccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHh
Confidence            456799999999  999999999999999999999999999999899999999999998643

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.46  E-value=8.5e-08  Score=86.77  Aligned_cols=91  Identities=23%  Similarity=0.237  Sum_probs=69.3

Q ss_pred             cccchhhh---hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCcc
Q 030753           51 TSSDRVSA---LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (172)
Q Consensus        51 r~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~  127 (172)
                      +.+++++.   .+...+.+..+.+...   ....+.+|+++|++.++++++.+++++.+++++|.++++..+||+|++++
T Consensus       129 ~~vpVVD~~~~~gkLvGIVT~~DLr~~---~~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~  205 (502)
T PRK07107        129 STVAVTEDGTAHGKLLGIVTSRDYRIS---RMSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGN  205 (502)
T ss_pred             CeEEEEeCCCcCCEEEEEEEcHHhhcc---ccCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCe
Confidence            35566654   3455555555554321   12345689999996447889999999999999999999999999998899


Q ss_pred             EEEEeeccceeeeeccc
Q 030753          128 LVGLVSDYDLLALDSIS  144 (172)
Q Consensus       128 lvGIVt~~Dll~~~~~~  144 (172)
                      ++|+||.+|+++....+
T Consensus       206 LvGIIT~~Dilk~~~~P  222 (502)
T PRK07107        206 LVYLVFRKDYDSHKENP  222 (502)
T ss_pred             EEEEEEhHHHHhcccCh
Confidence            99999999999765443

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.44  E-value=7.8e-08  Score=67.77  Aligned_cols=83  Identities=30%  Similarity=0.464  Sum_probs=61.5

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++. +...+.+....+.... .......++.++|.+  ++.++.+++++.+++++|.+++...+||++ +|+++|+
T Consensus        27 ~~~V~d~-~~~~G~v~~~dl~~~~-~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gv  101 (110)
T cd04595          27 ALPVVEG-GRVVGIISRRDVEKAL-RHGLGHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGI  101 (110)
T ss_pred             eeeEeeC-CEEEEEEEHHHHHHHH-hcccccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEE
Confidence            4455554 4444555444432211 112245678999988  899999999999999999999999999999 7899999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ||..|+++
T Consensus       102 vt~~di~~  109 (110)
T cd04595         102 VTRTDLLR  109 (110)
T ss_pred             EEhHHhhc
Confidence            99999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=1e-07  Score=68.27  Aligned_cols=57  Identities=39%  Similarity=0.612  Sum_probs=51.7

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|..  ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus        65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            35678899987  8899999999999999999999999999997789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=1.1e-07  Score=67.14  Aligned_cols=54  Identities=44%  Similarity=0.621  Sum_probs=49.9

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++|..  ++.++.+++++.++++.|.+.+...+||++++|+++|+++..|+++
T Consensus        59 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          59 TVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            58999988  8899999999999999999999999999987799999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=2e-07  Score=67.30  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=46.7

Q ss_pred             cceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (172)
Q Consensus        86 ~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll  138 (172)
                      .++|..  ++.++.+++++.++++.|.+++...+||+|++|+++|+||.+|+.
T Consensus        71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence            357777  889999999999999999999999999999889999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=1e-07  Score=66.96  Aligned_cols=85  Identities=32%  Similarity=0.417  Sum_probs=63.4

Q ss_pred             ccchhhhhccCceeeecCceeccCCCC--CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      .+++++..+...+.+....+..+....  .....++.++|.+  ++.++.+++++.++++.|.+.+...+||+++ |+++
T Consensus        26 ~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~  102 (113)
T cd04623          26 AVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLV  102 (113)
T ss_pred             eEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEE
Confidence            455555545555666555544322111  1224578999988  8899999999999999999999999999986 8999


Q ss_pred             EEeeccceee
Q 030753          130 GLVSDYDLLA  139 (172)
Q Consensus       130 GIVt~~Dll~  139 (172)
                      |+++.+|+++
T Consensus       103 Gvit~~di~~  112 (113)
T cd04623         103 GIVSIGDVVK  112 (113)
T ss_pred             EEEEHHHhhc
Confidence            9999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=8.7e-08  Score=69.72  Aligned_cols=86  Identities=20%  Similarity=0.179  Sum_probs=59.9

Q ss_pred             ccchhhhhccCceeeecCceeccC----C-C--CCCCeeEecceeeccceeeee------cccccHHHHHHHHHHhhhcC
Q 030753           52 SSDRVSALRRSSAVFASGTLTANS----A-A--PSSGVYTVGDFMTTKEELHVV------KPTTTVDEALEILVEKRITG  118 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~----~-~--~~~~~~~V~diM~~~~~~~~v------~~~~sl~eal~~m~~~~i~~  118 (172)
                      ++++++..+...|.++...+....    . .  ......+++++|.+  +...+      .+++++.++++.|.+++...
T Consensus        26 ~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~  103 (126)
T cd04640          26 LLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTP--KEDLKALDLEELENASVGDVVETLKASGRQH  103 (126)
T ss_pred             EEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCc--hhhhccccHHHhccCcHHHHHHHHHHCCCce
Confidence            445555444545555444443211    0 0  12245679999987  54433      26889999999999999999


Q ss_pred             cceecCC-ccEEEEeeccceee
Q 030753          119 FPVIDDD-WKLVGLVSDYDLLA  139 (172)
Q Consensus       119 lPVvd~~-~~lvGIVt~~Dll~  139 (172)
                      +||+|++ |+++|+||..|+++
T Consensus       104 lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640         104 ALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             EEEEECCCCEEEEEEeHHHHhh
Confidence            9999976 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.3e-07  Score=70.39  Aligned_cols=55  Identities=31%  Similarity=0.583  Sum_probs=50.3

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..+++++|.+  ++..+.+++++.++++.|.+++...+||+++ |+++|+|+.+|+++
T Consensus        80 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            4579999988  8889999999999999999999999999986 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.40  E-value=1.6e-07  Score=66.29  Aligned_cols=57  Identities=23%  Similarity=0.445  Sum_probs=51.8

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ..++.++|.+  ++.++.+++++.++++.|.+++...+||+|++|+++|+|+..|+++.
T Consensus        52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            4578999988  88999999999999999999999999999988999999999998753

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.40  E-value=1.5e-07  Score=67.03  Aligned_cols=55  Identities=35%  Similarity=0.455  Sum_probs=48.5

Q ss_pred             eEecceeeccceeeeecc--cccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           83 YTVGDFMTTKEELHVVKP--TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~--~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .+++++|..  ++..+..  ++++.++++.|.+++...+||+|++|+++|+||.+|+++
T Consensus        57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            468899987  6666655  999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.40  E-value=2.3e-07  Score=64.91  Aligned_cols=55  Identities=35%  Similarity=0.522  Sum_probs=46.1

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      +.+|++... .+.++.+++++.+++++|.+++...+||+|++|+++|+++.+|+++
T Consensus        41 ~~~dl~~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          41 TERDLIAKS-EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             EHHHHhcCC-CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            444544331 3678999999999999999999999999997799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=1.3e-07  Score=66.80  Aligned_cols=85  Identities=27%  Similarity=0.386  Sum_probs=61.7

Q ss_pred             ccchhhhhccCceeeecCceeccCCC---CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAA---PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      .+++++..++..|.+....+...-..   ......++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |++
T Consensus        26 ~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~  102 (114)
T cd04629          26 GGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKL  102 (114)
T ss_pred             CccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEE
Confidence            34455444444555544443321111   11234578899988  8889999999999999999999999999996 899


Q ss_pred             EEEeeccceee
Q 030753          129 VGLVSDYDLLA  139 (172)
Q Consensus       129 vGIVt~~Dll~  139 (172)
                      +|++|.+|+.+
T Consensus       103 ~Gvit~~di~~  113 (114)
T cd04629         103 VGQISRRDVLR  113 (114)
T ss_pred             EEEEEHHHHhc
Confidence            99999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=1e-07  Score=67.53  Aligned_cols=84  Identities=18%  Similarity=0.281  Sum_probs=61.7

Q ss_pred             ccchhhhhccCceeeecCceeccCCCC---CC---CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAP---SS---GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~  125 (172)
                      .+++++..++..|.+....+..+....   ..   ...++.++|.+  ++.++.+++++.++++.|.+.+  .+||+|++
T Consensus        26 ~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~  101 (116)
T cd04643          26 AIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT--DVPVIIDDADIEEILHLLIDQP--FLPVVDDD  101 (116)
T ss_pred             eeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcC--CCceecCCCCHHHHHHHHhcCC--ceeEEeCC
Confidence            455565555556666555554322211   01   14578999998  8999999999999999998765  58999988


Q ss_pred             ccEEEEeeccceee
Q 030753          126 WKLVGLVSDYDLLA  139 (172)
Q Consensus       126 ~~lvGIVt~~Dll~  139 (172)
                      |+++|++|.+|+++
T Consensus       102 ~~~~Gvit~~dil~  115 (116)
T cd04643         102 GIFIGIITRREILK  115 (116)
T ss_pred             CeEEEEEEHHHhhc
Confidence            99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.39  E-value=2e-07  Score=65.09  Aligned_cols=56  Identities=27%  Similarity=0.537  Sum_probs=50.8

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...+.++|.+  .+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus        51 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          51 DETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             cccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            3468899988  7889999999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.38  E-value=1.9e-07  Score=68.35  Aligned_cols=53  Identities=36%  Similarity=0.605  Sum_probs=49.3

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++|.+  ++..+.+++++.+++++|.+.+...+||+|+ |+++|++|..|+++
T Consensus        79 ~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            78899988  8899999999999999999999999999997 99999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.36  E-value=3e-07  Score=65.26  Aligned_cols=56  Identities=39%  Similarity=0.748  Sum_probs=51.4

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            4578899988  8999999999999999999999999999997799999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=2.6e-07  Score=65.18  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=50.1

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|..  ++.++.+++++++++++|.+++...+||++ +|+++|+||.+|+++
T Consensus        57 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            3579999987  888999999999999999999999999998 589999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.35  E-value=2e-07  Score=72.59  Aligned_cols=61  Identities=21%  Similarity=0.396  Sum_probs=55.8

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      ..++++.+|+.  +++.+.|++++.+++++|.++|++.+||+++ ++++|-||..++.+.....
T Consensus        63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~  123 (187)
T COG3620          63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEG  123 (187)
T ss_pred             ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhcc
Confidence            66899999999  9999999999999999999999999999985 8999999999998765443

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.34  E-value=2.1e-07  Score=65.56  Aligned_cols=83  Identities=31%  Similarity=0.380  Sum_probs=60.7

Q ss_pred             cchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      +++++. +...+.+....+...... ......++.++|..  ++.++.+++++.++++.|.+++.+.+||+++ |+++|+
T Consensus        27 i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gi  102 (111)
T cd04800          27 LLVVDD-GRLVGIVTDRDLRNRVVAEGLDPDTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGV  102 (111)
T ss_pred             EEEEEC-CEEEEEEEhHHHHHHHhccCCCccCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEE
Confidence            344443 444455544444321111 11233578999988  8999999999999999999999999999986 899999


Q ss_pred             eeccceee
Q 030753          132 VSDYDLLA  139 (172)
Q Consensus       132 Vt~~Dll~  139 (172)
                      ++.+|+++
T Consensus       103 it~~di~~  110 (111)
T cd04800         103 ISATDLLR  110 (111)
T ss_pred             EEHHHhhc
Confidence            99999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=5.6e-07  Score=63.43  Aligned_cols=47  Identities=28%  Similarity=0.450  Sum_probs=43.2

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++ |+++|++|..|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~   49 (98)
T cd04618           2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILI   49 (98)
T ss_pred             eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhh
Confidence            57899999999999999999999999999975 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=3.5e-07  Score=66.38  Aligned_cols=51  Identities=22%  Similarity=0.420  Sum_probs=46.4

Q ss_pred             ceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        87 diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      +.|..  ++.++.+++++.+++++|.+++...+||+|++++++|+||..|+++
T Consensus        75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            56666  7889999999999999999999999999997799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=4.2e-07  Score=65.30  Aligned_cols=86  Identities=13%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCC--Ce------eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSS--GV------YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID  123 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~------~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd  123 (172)
                      ++|++...+...|.+....+.........  ..      +...++|..  ++.++.+++++.++++.|.+++.+.+||+|
T Consensus        26 ~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  103 (120)
T cd04641          26 ALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFE--GVRTCSPDDCLRTIFDLIVKARVHRLVVVD  103 (120)
T ss_pred             eeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCC--CCeEEcCCCcHHHHHHHHHhcCccEEEEEC
Confidence            55666655555566554444421111100  01      122234445  678999999999999999999999999999


Q ss_pred             CCccEEEEeeccceee
Q 030753          124 DDWKLVGLVSDYDLLA  139 (172)
Q Consensus       124 ~~~~lvGIVt~~Dll~  139 (172)
                      ++|+++|+||.+|+++
T Consensus       104 ~~~~~~Givt~~di~~  119 (120)
T cd04641         104 ENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCCCEEEEEEHHHhhc
Confidence            7799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.34  E-value=6.4e-08  Score=70.86  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=62.2

Q ss_pred             ccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHH---------HhhhcCcce
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILV---------EKRITGFPV  121 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~---------~~~i~~lPV  121 (172)
                      .+++++..+...|.++...+...... ....+.+++++|.+  ++.++.+++++.++++++.         +.+...+||
T Consensus        27 ~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v  104 (124)
T cd04608          27 QLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYK--QFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIG  104 (124)
T ss_pred             EEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhc--cceecCCCCCHHHHHhhcccCCceEEEeccccccccc
Confidence            45556555555555554444321111 12245699999999  9999999999999999653         336778899


Q ss_pred             ecCCccEEEEeeccceeee
Q 030753          122 IDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus       122 vd~~~~lvGIVt~~Dll~~  140 (172)
                      ++++|+++||||.+|++++
T Consensus       105 ~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608         105 KEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             cccccceEEEEehhHhhhh
Confidence            9877999999999999764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.33  E-value=4.4e-07  Score=63.32  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=49.4

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++|.+  .+.++.+++++.++++.|.++++..+||+|++|+++|+++.+|+++
T Consensus        52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            47899988  7788999999999999999999999999998889999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.33  E-value=3.3e-07  Score=63.74  Aligned_cols=54  Identities=31%  Similarity=0.503  Sum_probs=49.7

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll  138 (172)
                      ..++.++|.+  ++.++.+++++.++++.|.+++...+||+|+ |+++|++|.+|++
T Consensus        50 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            3468899988  8999999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.32  E-value=2.4e-07  Score=78.75  Aligned_cols=76  Identities=25%  Similarity=0.316  Sum_probs=59.3

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc--C-CCCCCCCCCcC
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--G-SGRADNSMFPE  156 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~--~-~~~~~~~m~~~  156 (172)
                      ..++|+|+|++.+++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+.+.....  . ...+.+.|.++
T Consensus       200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~~~~~~~v~~im~~~  278 (326)
T PRK10892        200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGIDLRQASIADVMTPG  278 (326)
T ss_pred             ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCCCcccCCHHHhcCCC
Confidence            5678999998533688999999999999999999988888888889999999999987543221  1 34455666553

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.30  E-value=2.8e-07  Score=64.79  Aligned_cols=55  Identities=22%  Similarity=0.412  Sum_probs=50.1

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .++.++|..  ++.++.+++++.++++.|.+.+...+||++++|+++|+++.+|+++
T Consensus        55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            568889887  8899999999999999999999999999997799999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.30  E-value=3.1e-07  Score=79.29  Aligned_cols=86  Identities=20%  Similarity=0.255  Sum_probs=75.1

Q ss_pred             EeecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCcc
Q 030753           48 VLATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (172)
Q Consensus        48 ~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~  127 (172)
                      +.|--||+++......+.+     ..+++..+..+.+++.+|++  +|.++.+.+++..+.+.|.-.+++.+||+|++.+
T Consensus       219 t~~sRfPVvn~~~kvvGvV-----t~rDv~~~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~  291 (432)
T COG4109         219 TGHSRFPVVNRSMKVVGVV-----TMRDVLDKKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNT  291 (432)
T ss_pred             cCCCccceecccceEEEEE-----EehhhhcCCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCCce
Confidence            4667789998777665555     55666667788999999999  9999999999999999999999999999999999


Q ss_pred             EEEEeeccceeee
Q 030753          128 LVGLVSDYDLLAL  140 (172)
Q Consensus       128 lvGIVt~~Dll~~  140 (172)
                      ++|+||++|+++.
T Consensus       292 llGiitR~dvlk~  304 (432)
T COG4109         292 LLGIITRQDVLKS  304 (432)
T ss_pred             EEEEEEHHHHHHH
Confidence            9999999999854

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=3.3e-07  Score=64.61  Aligned_cols=56  Identities=34%  Similarity=0.665  Sum_probs=50.0

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|.+  ++.++.+++++.+++++|.+++...+||+|++ +++|+|+.+|+++
T Consensus        56 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          56 REVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             ccCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            34578899988  88899999999999999999999999999865 8999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.28  E-value=4.8e-07  Score=65.01  Aligned_cols=56  Identities=41%  Similarity=0.723  Sum_probs=51.1

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|.+  ++.++.+++++.++++.|.+.+...+||+|++|+++|+||.+|+++
T Consensus        69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3478899987  8999999999999999999999999999997789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=98.27  E-value=1.3e-07  Score=77.91  Aligned_cols=94  Identities=24%  Similarity=0.374  Sum_probs=75.8

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC------CCCCCC
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG------SGRADN  151 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~------~~~~~~  151 (172)
                      +..+..|+|+|.+|.+.+++..+.++.+++..+.+...+++||+.++ +.+.||+..+||++......      ...+..
T Consensus        63 ~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~~F~i~~lLRPa  142 (293)
T COG4535          63 DIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAEPFDIKELLRPA  142 (293)
T ss_pred             HHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcccccHHHhcccc
Confidence            34567999999999999999999999999999999999999999765 78999999999998643331      345566


Q ss_pred             CCCcCc---cchhhhhhhhccccC
Q 030753          152 SMFPEV---DSTWKVYIQRGAEVA  172 (172)
Q Consensus       152 ~m~~~~---~~l~~~l~~i~~lma  172 (172)
                      .+.|+.   +.+.+-|+.-+.+||
T Consensus       143 v~VPESKrvd~lLkeFR~~RnHMA  166 (293)
T COG4535         143 VVVPESKRVDRLLKEFRSQRNHMA  166 (293)
T ss_pred             eecccchhHHHHHHHHHhhcCceE
Confidence            667754   556666777777776

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.23  E-value=4e-07  Score=64.10  Aligned_cols=84  Identities=20%  Similarity=0.135  Sum_probs=58.2

Q ss_pred             ccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           52 SSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        52 ~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      +++++... +...|.+....+..... ......++.++| .  ++.++.+++++.++++.|.+++...+||+|++|+++|
T Consensus        26 ~~~v~~~~~~~~~G~v~~~~l~~~~~-~~~~~~~~~~~~-~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G  101 (111)
T cd04590          26 RFPVYDGDLDNIIGVVHVKDLLRALA-EGEEDLDLRDLL-R--PPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAG  101 (111)
T ss_pred             eEEEECCCCceEEEEEEHHHHHHHHH-cCCCcCCHHHHh-c--CCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEE
Confidence            34444443 44455554444332211 111113566665 4  5788999999999999999999999999998899999


Q ss_pred             Eeeccceee
Q 030753          131 LVSDYDLLA  139 (172)
Q Consensus       131 IVt~~Dll~  139 (172)
                      ++|.+|+++
T Consensus       102 vit~~di~~  110 (111)
T cd04590         102 LVTLEDILE  110 (111)
T ss_pred             EeEHHHhhc
Confidence            999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.22  E-value=6.5e-07  Score=75.91  Aligned_cols=89  Identities=28%  Similarity=0.324  Sum_probs=73.3

Q ss_pred             cccchhhhhccCceeeecCceeccCC------CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      |..|+++..++..+.+....+....-      ......-+++.+|++  .+.++.++++..+.+-++.+.+...+||+|+
T Consensus       277 kaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~--~v~tv~pdtpa~~lvp~lad~g~H~lpvld~  354 (382)
T COG3448         277 KALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTT--PVVTVRPDTPAVELVPRLADEGLHALPVLDA  354 (382)
T ss_pred             ccccccccccceeeeeeHHHHhhccCcchHHHhhccCCCcccccccC--cceeecCCCcHHHHHHHhhcCCcceeeEEcC
Confidence            67799999998888876555544111      012356789999999  8999999999999999999999999999999


Q ss_pred             CccEEEEeeccceeeee
Q 030753          125 DWKLVGLVSDYDLLALD  141 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~  141 (172)
                      +|+++||||..|++...
T Consensus       355 ~g~lvGIvsQtDliaal  371 (382)
T COG3448         355 AGKLVGIVSQTDLIAAL  371 (382)
T ss_pred             CCcEEEEeeHHHHHHHH
Confidence            99999999999998543

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.20  E-value=4.9e-07  Score=81.44  Aligned_cols=60  Identities=30%  Similarity=0.414  Sum_probs=54.9

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      .+++++|++  ++.++.+++++.+++++|.++++..+||+|++++++|+||.+||++....+
T Consensus       148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~  207 (479)
T PRK07807        148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYT  207 (479)
T ss_pred             CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCC
Confidence            569999998  999999999999999999999999999999889999999999999755443

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.20  E-value=4.6e-07  Score=76.77  Aligned_cols=57  Identities=23%  Similarity=0.251  Sum_probs=52.4

Q ss_pred             eeEecceeeccce--eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           82 VYTVGDFMTTKEE--LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        82 ~~~V~diM~~~~~--~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ..+|+++|.+  +  +.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.
T Consensus       196 ~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~  254 (321)
T PRK11543        196 LNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRW  254 (321)
T ss_pred             HhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHH
Confidence            6789999999  7  9999999999999999999998999999988999999999998753

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=9.9e-07  Score=62.97  Aligned_cols=56  Identities=38%  Similarity=0.657  Sum_probs=50.8

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|..  ++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus        65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            34578889988  8899999999999999999999999999997 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.19  E-value=5.3e-07  Score=81.17  Aligned_cols=61  Identities=23%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      ..+++++|++  +++++.+++++.+++++|.++++..+||+|++|+++|+||.+||++....+
T Consensus       145 ~~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~~  205 (475)
T TIGR01303       145 FTQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIYT  205 (475)
T ss_pred             CCCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhCC
Confidence            3579999998  999999999999999999999999999999889999999999999754443

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.19  E-value=5.1e-07  Score=64.38  Aligned_cols=56  Identities=38%  Similarity=0.595  Sum_probs=50.6

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|.+  ++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus        65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            34578899988  8899999999999999999999999999986 89999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.19  E-value=6.6e-07  Score=81.89  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=54.7

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ....++++|+|++  ++.++++++++.++++.|.+++.+.+||+|++++++|+|+.+|+.+.
T Consensus       443 ~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~  502 (574)
T PRK01862        443 RLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSD  502 (574)
T ss_pred             HHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHH
Confidence            3467899999998  88899999999999999999999999999988999999999998863

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.19  E-value=5.5e-07  Score=82.37  Aligned_cols=88  Identities=20%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             cccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--cc
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WK  127 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~  127 (172)
                      +.+++++..++..+.+...++...-.. ....+.+++|+|.+  ++.++++++++++++++|.+++.+.+||+|++  ++
T Consensus       479 ~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~~~~~~v~dim~~--~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~  556 (574)
T PRK01862        479 KYLYVVDDDGRFRGAVALKDITSDLLDKRDTTDKTAADYAHT--PFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPT  556 (574)
T ss_pred             ceEEEEcCCCeEEEEEEHHHHHHHhhcccccccchHHHhccC--CCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCe
Confidence            355666666555666655554332111 12234578999988  88999999999999999999999999999876  48


Q ss_pred             EEEEeeccceeee
Q 030753          128 LVGLVSDYDLLAL  140 (172)
Q Consensus       128 lvGIVt~~Dll~~  140 (172)
                      ++|+||.+|+.+.
T Consensus       557 liGvIt~~DIl~~  569 (574)
T PRK01862        557 LAGVVYKTSLLDA  569 (574)
T ss_pred             EEEEEEHHHHHHH
Confidence            9999999999864

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.18  E-value=1.4e-06  Score=61.55  Aligned_cols=53  Identities=45%  Similarity=0.747  Sum_probs=49.2

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHH-hhhcCcceecCCc-cEEEEeecccee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDW-KLVGLVSDYDLL  138 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~-~~i~~lPVvd~~~-~lvGIVt~~Dll  138 (172)
                      ++.++|+.  ++.++.+++++.++++.|.+ +++..+||+++++ +++|++|..|+.
T Consensus        63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence            68999998  88999999999999999999 6999999999875 999999999873

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.18  E-value=9.5e-07  Score=72.73  Aligned_cols=80  Identities=30%  Similarity=0.333  Sum_probs=60.5

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      ++++++..++..+.+....+............+++++|.+  ++.++.+++++.+++++|.+++...+||+|++|+++|+
T Consensus       189 ~~~Vvd~~g~~~Givt~~dl~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Gv  266 (268)
T TIGR00393       189 SAIVCDENNQLVGVFTDGDLRRALLGGGSLKSEVRDFMTL--GPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGV  266 (268)
T ss_pred             EEEEEeCCCCEEEEEEcHHHHHHHhcCCcccCcHHHhCCC--CCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEE
Confidence            4455655555666665555433211122245679999988  88999999999999999999999999999988999999


Q ss_pred             ee
Q 030753          132 VS  133 (172)
Q Consensus       132 Vt  133 (172)
                      |+
T Consensus       267 I~  268 (268)
T TIGR00393       267 LH  268 (268)
T ss_pred             EC
Confidence            85

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.17  E-value=5.7e-07  Score=81.49  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=56.4

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      .+.+|.++|++.++++++.+++++.+++++|.++++..+||+|++++++|+||.+|+++....+
T Consensus       161 ~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p  224 (505)
T PLN02274        161 RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYP  224 (505)
T ss_pred             cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCc
Confidence            4568999999822388999999999999999999999999999889999999999999766554

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=1.9e-06  Score=60.24  Aligned_cols=47  Identities=32%  Similarity=0.510  Sum_probs=43.3

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcC
Confidence            57789999999999999999999999999988999999999998863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=1e-06  Score=63.11  Aligned_cols=55  Identities=36%  Similarity=0.582  Sum_probs=50.5

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .++.++|..  ++.++.+++++.++++.|.+++...+||+|++++++|+++..|+++
T Consensus        67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            468899988  8999999999999999999999999999997799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.16  E-value=6.9e-07  Score=79.71  Aligned_cols=61  Identities=16%  Similarity=0.306  Sum_probs=54.9

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~  143 (172)
                      .+.+++++|.+  ++.++.++++++++++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus       193 ~~~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~  253 (449)
T TIGR00400       193 PEEILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQS  253 (449)
T ss_pred             CCCcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHh
Confidence            34579999998  88999999999999999999999999999988999999999999965443

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.16  E-value=1.1e-06  Score=79.38  Aligned_cols=64  Identities=33%  Similarity=0.427  Sum_probs=56.8

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      ...+|+++|++.++++++.+++++.+++++|.++++..+||+|++++++|+||.+|+++....+
T Consensus       157 ~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~~p  220 (495)
T PTZ00314        157 KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRGYP  220 (495)
T ss_pred             CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcccCc
Confidence            3568999998755788999999999999999999999999999889999999999999765443

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.13  E-value=1.6e-06  Score=61.10  Aligned_cols=56  Identities=29%  Similarity=0.388  Sum_probs=50.4

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|.+  ++..+.+++++.++++.|.+++...+||+|+ ++++|+++..|+++
T Consensus        55 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          55 SSTPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            34578899988  8889999999999999999999999999984 89999999999865

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.13  E-value=1.7e-06  Score=60.76  Aligned_cols=54  Identities=24%  Similarity=0.509  Sum_probs=49.6

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++|.+  ++.++.++++++++++.|.+++...+||++++|+++|+|+..|+.+
T Consensus        56 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          56 SVEDIMTR--NVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             CHHHhcCC--CCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            58899987  8889999999999999999999999999998899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.13  E-value=1e-06  Score=61.51  Aligned_cols=83  Identities=23%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCC-CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPS-SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      .+++++. +...+.+....+........ ....++.++|.+  ++.++.+++++.+++++|.+ . ..+||++++|+++|
T Consensus        26 ~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~G  100 (110)
T cd04609          26 QLPVVDD-GRVVGSIDESDLLDALIEGKAKFSLPVREVMGE--PLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVG  100 (110)
T ss_pred             eeeEeeC-CeeEEEEeHHHHHHHHhccccccCcCHHHHhcC--CCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEE
Confidence            3455554 44455555444443322111 113568899987  88899999999999999988 3 34789987899999


Q ss_pred             Eeeccceee
Q 030753          131 LVSDYDLLA  139 (172)
Q Consensus       131 IVt~~Dll~  139 (172)
                      +||.+|+.+
T Consensus       101 vvt~~di~~  109 (110)
T cd04609         101 IITRADLLK  109 (110)
T ss_pred             EEeHHHhhc
Confidence            999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.13  E-value=7.9e-07  Score=80.79  Aligned_cols=59  Identities=32%  Similarity=0.423  Sum_probs=54.1

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ..+|+|+|.+  ++.++.+++++.+++++|.+++++.+||+|++|+++|+|+..|+.+...
T Consensus        67 ~~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~  125 (546)
T PRK14869         67 KPQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYM  125 (546)
T ss_pred             CCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHH
Confidence            3589999998  9999999999999999999999999999998899999999999986443

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.13  E-value=1.8e-06  Score=60.56  Aligned_cols=53  Identities=30%  Similarity=0.492  Sum_probs=48.5

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++|.+  .+.++.+++++.++++.|.+++...+||++ +|+++|++|.+|+..
T Consensus        51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            57788987  889999999999999999999999999998 689999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.12  E-value=9.8e-07  Score=72.66  Aligned_cols=57  Identities=37%  Similarity=0.500  Sum_probs=52.4

Q ss_pred             eeEecceeeccce-eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           82 VYTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        82 ~~~V~diM~~~~~-~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      -.+|+++|.+  + +.++.+++++.++++.|.+.+++.+||+|++|+++|+|+..|+.+.
T Consensus       154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~  211 (268)
T TIGR00393       154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRA  211 (268)
T ss_pred             hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence            4789999988  7 8999999999999999999999999999988999999999998764

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.10  E-value=2.4e-06  Score=61.29  Aligned_cols=47  Identities=30%  Similarity=0.709  Sum_probs=43.6

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+...
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~   48 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINL   48 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHH
Confidence            57889999999999999999999999999988999999999998854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.10  E-value=2.6e-06  Score=63.66  Aligned_cols=48  Identities=29%  Similarity=0.394  Sum_probs=44.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++..
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~   49 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFL   49 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHH
Confidence            578899999999999999999999999999889999999999988644

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=98.10  E-value=1.2e-06  Score=76.20  Aligned_cols=92  Identities=20%  Similarity=0.224  Sum_probs=78.2

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccC--------CCC
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISG--------SGR  148 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~--------~~~  148 (172)
                      .+++.++|+|+|++|.++..++.+++.+++.+.+.+..+.++|+..++ ++++|+++.+|+++.....+        ..-
T Consensus       195 LDLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~~~k~d~~~~a  274 (423)
T COG4536         195 LDLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNEFTKEDILRAA  274 (423)
T ss_pred             cccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCcccHhHHHHHh
Confidence            466889999999999999999999999999999999999999999766 78999999999997765444        223


Q ss_pred             CCCCCCcCccchhhhhhhhcc
Q 030753          149 ADNSMFPEVDSTWKVYIQRGA  169 (172)
Q Consensus       149 ~~~~m~~~~~~l~~~l~~i~~  169 (172)
                      .+.++.|+-.++..+|..+|+
T Consensus       275 ~epyFVPe~Tpl~~QL~~F~~  295 (423)
T COG4536         275 DEPYFVPEGTPLSDQLVAFQR  295 (423)
T ss_pred             cCCeecCCCCcHHHHHHHHHH
Confidence            567778888888887777654

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.10  E-value=1.9e-06  Score=78.39  Aligned_cols=59  Identities=29%  Similarity=0.519  Sum_probs=54.3

Q ss_pred             CeeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ...+|+++|+ +  ++.++.+++++.++.+.|.++++..+||+|++|+++|+++.+|+.+..
T Consensus       244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~  303 (546)
T PRK14869        244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPV  303 (546)
T ss_pred             cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccc
Confidence            4568999999 7  899999999999999999999999999999889999999999998643

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.10  E-value=3.1e-06  Score=49.83  Aligned_cols=45  Identities=42%  Similarity=0.735  Sum_probs=40.6

Q ss_pred             eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      +.++.+++++.++++.|.+.++..+||++++++++|+++..++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~   46 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIK   46 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHH
Confidence            467889999999999999999999999997789999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.08  E-value=2.3e-06  Score=61.99  Aligned_cols=56  Identities=27%  Similarity=0.432  Sum_probs=49.7

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec--CCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd--~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|.+  +++++.+++++.+++++|.+++...+||++  ++|+++|+||.+|+++
T Consensus        70 ~~~~~~~~~~--~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          70 DLPVYDAMSS--PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             cCcHHHHhcC--CCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            4578899988  899999999999999999999999999985  3589999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.08  E-value=2.6e-06  Score=76.79  Aligned_cols=59  Identities=22%  Similarity=0.316  Sum_probs=54.2

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ....+++.++|.+  +++++.+++++.+++++|.+++++.+||+|++++++|+|+.+|+..
T Consensus        85 ~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~  143 (479)
T PRK07807         85 VVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAG  143 (479)
T ss_pred             HHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhc
Confidence            3466788999998  9999999999999999999999999999998899999999999864

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=1.6e-06  Score=59.75  Aligned_cols=53  Identities=43%  Similarity=0.771  Sum_probs=48.6

Q ss_pred             ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      +.++|..  ++..+.+++++.++++.|.+.+...+||+|++++++|+++.+|+.+
T Consensus        60 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTR--DVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcC--CceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            6678887  8889999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.05  E-value=1.7e-06  Score=76.63  Aligned_cols=59  Identities=34%  Similarity=0.400  Sum_probs=54.3

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      +..++++++|.+  ++.++.+++++.++++.|.+++++.+||+|++++++|+|+.+|+.+.
T Consensus       332 l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~  390 (454)
T TIGR01137       332 LKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSA  390 (454)
T ss_pred             hccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            577899999998  89999999999999999999999999999988999999999998863

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.05  E-value=3.9e-06  Score=59.51  Aligned_cols=49  Identities=22%  Similarity=0.489  Sum_probs=45.4

Q ss_pred             eeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        88 iM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      +|.+  ++.++.+++++.++++.|.+++...+||++ +|+++|+|+.+|+.+
T Consensus        56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            7877  888999999999999999999999999996 689999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.02  E-value=2.1e-06  Score=62.74  Aligned_cols=63  Identities=33%  Similarity=0.451  Sum_probs=50.3

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc---cCCCCCCCCCCcC
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSMFPE  156 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~---~~~~~~~~~m~~~  156 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+++....   ....++.+.|..+
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~~~~~~v~~im~~~   68 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQ   68 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhccCCCCcHHHHhhcc
Confidence            67889999999999999999999999999988999999999998853221   2234555555443

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.01  E-value=7.2e-06  Score=58.20  Aligned_cols=47  Identities=26%  Similarity=0.364  Sum_probs=42.7

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+.+.+||+|++|+++|+|+..|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04603           2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEI   48 (111)
T ss_pred             ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhh
Confidence            46788999999999999999999999999988999999999998763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.00  E-value=3e-06  Score=76.35  Aligned_cols=86  Identities=28%  Similarity=0.387  Sum_probs=66.2

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      ..+|+++..+...+.+....+...    .....++.++|+ .  +++++.+++++.++++.|.+++++.+||+|++|+++
T Consensus       119 ~~lpVvd~~g~lvGiVt~~DL~~~----~~~~~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lv  192 (486)
T PRK05567        119 SGVPVVDENGKLVGIITNRDVRFE----TDLSQPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLK  192 (486)
T ss_pred             CEEEEEccCCEEEEEEEHHHhhhc----ccCCCcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence            456666655555555544443211    113457999998 5  789999999999999999999999999999889999


Q ss_pred             EEeeccceeeeec
Q 030753          130 GLVSDYDLLALDS  142 (172)
Q Consensus       130 GIVt~~Dll~~~~  142 (172)
                      |+||.+||++...
T Consensus       193 GiIT~~DLl~~~~  205 (486)
T PRK05567        193 GLITVKDIEKAEE  205 (486)
T ss_pred             EEEEhHHhhhhhh
Confidence            9999999986543

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.00  E-value=4.5e-06  Score=59.46  Aligned_cols=47  Identities=28%  Similarity=0.312  Sum_probs=43.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+.++.+++++.++++.|.+++...+||+|++|+++|+++.+|+.+.
T Consensus         2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~   48 (114)
T cd04619           2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQ   48 (114)
T ss_pred             ceEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHH
Confidence            46788999999999999999999999999988999999999998853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.00  E-value=6.5e-06  Score=58.92  Aligned_cols=47  Identities=40%  Similarity=0.711  Sum_probs=43.1

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++.+.|.+.+++.+||+|++|+++|+|+.+|+...
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~   49 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRH   49 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhh
Confidence            67889999999999999999999999999977999999999998753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.99  E-value=3.2e-06  Score=75.59  Aligned_cols=60  Identities=33%  Similarity=0.501  Sum_probs=54.4

Q ss_pred             eeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753           82 VYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus        82 ~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~  143 (172)
                      ..+++++|+ .  ++.++.+++++.++++.|.++++..+||+|++|+++|+||.+|+++....
T Consensus       142 ~~~V~dvm~~~--~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~~  202 (450)
T TIGR01302       142 GKPVSEVMTRE--EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRKF  202 (450)
T ss_pred             CCCHHHhhCCC--CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcccC
Confidence            457999998 5  78999999999999999999999999999988999999999999976543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.98  E-value=9.1e-06  Score=57.09  Aligned_cols=48  Identities=31%  Similarity=0.442  Sum_probs=43.7

Q ss_pred             ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        93 ~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      +++.++.++++++++++.|.+.+.+.+||+|++|+++|+++..|+...
T Consensus         2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (108)
T cd04596           2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGK   49 (108)
T ss_pred             CccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhcc
Confidence            467889999999999999999999999999988999999999998753

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.98  E-value=2.4e-06  Score=63.72  Aligned_cols=55  Identities=31%  Similarity=0.642  Sum_probs=49.7

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..++.++|..  ++.++.+++++.++++.|.+.+...+||+++ ++++|+++.+|+++
T Consensus        88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            4568889988  8999999999999999999999999999986 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.98  E-value=5.8e-06  Score=71.58  Aligned_cols=74  Identities=28%  Similarity=0.428  Sum_probs=62.7

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +.+-++|+|+|+|.++..++.+++++++..++..+.+.+++||+|+..+++|+|+.+|+....   .+++.+.+|..
T Consensus       184 KkdI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~---~~t~ieKVMtk  257 (432)
T COG4109         184 KKDIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK---PSTTIEKVMTK  257 (432)
T ss_pred             hhheeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC---CCccHHHHhcc
Confidence            456789999999888999999999999999999999999999999889999999999988543   23444455554

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=5.7e-06  Score=58.43  Aligned_cols=48  Identities=33%  Similarity=0.416  Sum_probs=43.6

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~   49 (116)
T cd04643           2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKL   49 (116)
T ss_pred             CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHh
Confidence            678899999999999999999999999999889999999999987543

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.94  E-value=9.1e-06  Score=58.85  Aligned_cols=48  Identities=29%  Similarity=0.511  Sum_probs=43.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+.+..
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~   49 (126)
T cd04642           2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLL   49 (126)
T ss_pred             CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhh
Confidence            577899999999999999999999999999889999999999988644

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.93  E-value=5.9e-06  Score=58.75  Aligned_cols=57  Identities=18%  Similarity=0.287  Sum_probs=48.7

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhc---CcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRIT---GFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~---~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ...++.++|.+  ++.++.+++++.++++.|.+++..   ..+|++++|+++|+|+..|+++
T Consensus        59 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          59 GKKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cCCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            34578999988  899999999999999999988753   4578887899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.92  E-value=1e-05  Score=56.73  Aligned_cols=47  Identities=28%  Similarity=0.622  Sum_probs=43.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++..|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (110)
T cd04605           3 PVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKA   49 (110)
T ss_pred             CCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHH
Confidence            67789999999999999999999999999988999999999998753

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.91  E-value=1.4e-05  Score=56.12  Aligned_cols=47  Identities=34%  Similarity=0.607  Sum_probs=42.4

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+|+..|+.+.
T Consensus         2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~   48 (111)
T cd04639           2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRA   48 (111)
T ss_pred             CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHH
Confidence            56778999999999999998999999999977999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.91  E-value=2.7e-06  Score=77.23  Aligned_cols=83  Identities=22%  Similarity=0.248  Sum_probs=65.1

Q ss_pred             hhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccc
Q 030753           58 ALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD  136 (172)
Q Consensus        58 ~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~D  136 (172)
                      ......|.+.+-.+...-+ .......+|+++|+.  ++++++.++-+.+|+-.|.+++|.++||++ +|+++||||..|
T Consensus       188 ~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~--p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~d  264 (610)
T COG2905         188 DSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTS--PVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTD  264 (610)
T ss_pred             CCCCccceeehHHHHHHHHhcCCCcccchhhhhcc--CceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHH
Confidence            3344444443333333333 345677899999999  999999999999999999999999999997 699999999999


Q ss_pred             eeeeecc
Q 030753          137 LLALDSI  143 (172)
Q Consensus       137 ll~~~~~  143 (172)
                      |++....
T Consensus       265 Il~l~s~  271 (610)
T COG2905         265 ILRLFSQ  271 (610)
T ss_pred             HHHhhCC
Confidence            9976553

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.90  E-value=5.3e-06  Score=58.00  Aligned_cols=54  Identities=37%  Similarity=0.551  Sum_probs=48.2

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .++.++|..  ++.++.++++++++++.|.+++...+||+|+ |+++|+++.+|+++
T Consensus        52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            357788887  8889999999999999999999999999984 79999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.90  E-value=1.3e-05  Score=55.76  Aligned_cols=47  Identities=21%  Similarity=0.401  Sum_probs=42.6

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~   48 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARA   48 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHh
Confidence            56788999999999999999999999999978999999999998864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.90  E-value=1.6e-05  Score=55.75  Aligned_cols=47  Identities=32%  Similarity=0.579  Sum_probs=43.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~   48 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREI   48 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHH
Confidence            56789999999999999999999999999988999999999999753

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.87  E-value=1.5e-05  Score=56.55  Aligned_cols=47  Identities=34%  Similarity=0.386  Sum_probs=42.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~   48 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRA   48 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHH
Confidence            56788999999999999999999999999988999999999998854

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.86  E-value=1e-05  Score=57.24  Aligned_cols=48  Identities=27%  Similarity=0.342  Sum_probs=42.1

Q ss_pred             eeeeecccccHHHHHHHHHHhh-hcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~-i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+++ .+.+||+|++|+++|+|+.+|+.+..
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~   50 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIP   50 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHH
Confidence            5678999999999999997765 88899999889999999999988644

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.84  E-value=1.6e-05  Score=71.14  Aligned_cols=56  Identities=32%  Similarity=0.546  Sum_probs=51.1

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLA  139 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~  139 (172)
                      -...+++|.+  ++.++.+++++.+++++|.+++++.+||+|++   ++++|+|+.+|+..
T Consensus        79 Vk~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~  137 (450)
T TIGR01302        79 VKRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRF  137 (450)
T ss_pred             hccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhh
Confidence            3467888988  99999999999999999999999999999977   69999999999974

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=1.5e-05  Score=59.16  Aligned_cols=49  Identities=22%  Similarity=0.375  Sum_probs=44.2

Q ss_pred             ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        93 ~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      |++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++..
T Consensus         1 ~~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~   49 (135)
T cd04621           1 EDIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAE   49 (135)
T ss_pred             CCceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHh
Confidence            3677899999999999999999999999999889999999999998643

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.82  E-value=2e-05  Score=55.31  Aligned_cols=48  Identities=31%  Similarity=0.502  Sum_probs=43.5

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++ |+++|+++..|+.+..
T Consensus         2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~   50 (111)
T cd04590           2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRAL   50 (111)
T ss_pred             ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHH
Confidence            57789999999999999999999999999987 8999999999988644

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.81  E-value=1.9e-05  Score=55.26  Aligned_cols=47  Identities=36%  Similarity=0.596  Sum_probs=42.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~   48 (113)
T cd04623           2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRK   48 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHH
Confidence            56788999999999999999999999999977999999999998854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.80  E-value=1.7e-05  Score=57.33  Aligned_cols=46  Identities=33%  Similarity=0.614  Sum_probs=42.4

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.+++++|.+.+++.+||+|++|+++|+++..|+..
T Consensus         2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~   47 (128)
T cd04632           2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVD   47 (128)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHH
Confidence            5678899999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=97.80  E-value=6.6e-06  Score=73.64  Aligned_cols=81  Identities=16%  Similarity=0.261  Sum_probs=65.4

Q ss_pred             hhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeec
Q 030753           55 RVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD  134 (172)
Q Consensus        55 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~  134 (172)
                      +++..+...|.++     .+.+-....+.+++++|.+  +++++.++++.+++++++.++++-.+||||++++++|++|.
T Consensus       173 VvD~~~~L~Gvvs-----l~~Ll~a~~~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~iti  245 (451)
T COG2239         173 VVDEKGKLLGVVS-----LRDLLTAEPDELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITI  245 (451)
T ss_pred             EECCccceEEEee-----HHHHhcCCcHhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeH
Confidence            4555555555543     3333334467799999999  89999999999999999999999999999999999999999


Q ss_pred             cceeeeec
Q 030753          135 YDLLALDS  142 (172)
Q Consensus       135 ~Dll~~~~  142 (172)
                      .|++....
T Consensus       246 DDiidvi~  253 (451)
T COG2239         246 DDIIDVIE  253 (451)
T ss_pred             HHHHHHHH
Confidence            99986543

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.80  E-value=1.9e-05  Score=56.34  Aligned_cols=47  Identities=34%  Similarity=0.573  Sum_probs=43.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.+++++|.+.+++.+||++++|+++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~   48 (122)
T cd04803           2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHH
Confidence            56789999999999999999999999999977999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=1.5e-05  Score=57.38  Aligned_cols=47  Identities=23%  Similarity=0.370  Sum_probs=42.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.++++..+||+|++ |+++|+|+..|+.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~   49 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEF   49 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHH
Confidence            67789999999999999999999999999987 899999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=2.5e-05  Score=55.70  Aligned_cols=47  Identities=23%  Similarity=0.543  Sum_probs=43.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRA   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhh
Confidence            57789999999999999999999999999988999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.75  E-value=3.2e-05  Score=53.84  Aligned_cols=47  Identities=30%  Similarity=0.476  Sum_probs=42.7

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.++..+||+|++++++|+++..|+.+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~   49 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQA   49 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHH
Confidence            56788999999999999999999999999987999999999998754

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.75  E-value=2.3e-05  Score=55.53  Aligned_cols=47  Identities=23%  Similarity=0.325  Sum_probs=42.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~   49 (114)
T cd04630           2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKK   49 (114)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHH
Confidence            57789999999999999999999999999987 899999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=97.75  E-value=8e-06  Score=74.18  Aligned_cols=76  Identities=22%  Similarity=0.331  Sum_probs=66.7

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC---CCCCCCCCCcC
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPE  156 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~---~~~~~~~m~~~  156 (172)
                      +-..++.++|+.  ++++|.+..++.+|+.+|.+.|++.+.|+++++...||||.+|+.......+   .+.+..+|+..
T Consensus       146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~~~~~~V~evmT~p  223 (610)
T COG2905         146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGRSKTQKVSEVMTSP  223 (610)
T ss_pred             HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCCCcccchhhhhccC
Confidence            345688999999  9999999999999999999999999999998899999999999997765544   67788888876


Q ss_pred             c
Q 030753          157 V  157 (172)
Q Consensus       157 ~  157 (172)
                      +
T Consensus       224 ~  224 (610)
T COG2905         224 V  224 (610)
T ss_pred             c
Confidence            5

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.75  E-value=2.2e-05  Score=56.14  Aligned_cols=48  Identities=35%  Similarity=0.440  Sum_probs=43.4

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.++++..+||+|++++++|+|+.+|+.+..
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~   49 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKAS   49 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            467899999999999999999999999999889999999999988644

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.74  E-value=3e-05  Score=56.58  Aligned_cols=47  Identities=36%  Similarity=0.668  Sum_probs=42.9

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++++++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~   48 (132)
T cd04636           2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRK   48 (132)
T ss_pred             CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHH
Confidence            57789999999999999999999999999988999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.74  E-value=3.2e-05  Score=69.77  Aligned_cols=54  Identities=33%  Similarity=0.527  Sum_probs=50.6

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .++++|.+  ++.++.+++++.+++++|.+++++.+||+|++++++|+|+.+|+..
T Consensus        88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~  141 (486)
T PRK05567         88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRF  141 (486)
T ss_pred             hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhh
Confidence            56889998  9999999999999999999999999999998899999999999864

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.74  E-value=2.3e-05  Score=55.02  Aligned_cols=47  Identities=26%  Similarity=0.513  Sum_probs=42.7

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~   48 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRA   48 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHH
Confidence            56788999999999999999999999999988999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.73  E-value=2.9e-05  Score=54.55  Aligned_cols=46  Identities=39%  Similarity=0.616  Sum_probs=42.2

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++++++|+|+..|+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~   47 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLK   47 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHH
Confidence            5678899999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.72  E-value=2.5e-05  Score=70.79  Aligned_cols=68  Identities=25%  Similarity=0.318  Sum_probs=54.0

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      ..++.|..  ++.++.+++++.+++++|.+++++.+||+|++   ++++|+|+.+|+....  .....+.+.|.+
T Consensus        97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~--~~~~~V~diMt~  167 (495)
T PTZ00314         97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK--DKSTPVSEVMTP  167 (495)
T ss_pred             cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc--cCCCCHHHhhCC
Confidence            46678888  89999999999999999999999999999863   7999999999987322  123344445543

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.72  E-value=5.4e-05  Score=52.42  Aligned_cols=46  Identities=30%  Similarity=0.581  Sum_probs=41.4

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.++++..+||+| +++++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRA   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcc
Confidence            567789999999999999999989999998 6899999999998864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.71  E-value=3.7e-05  Score=53.97  Aligned_cols=47  Identities=26%  Similarity=0.391  Sum_probs=42.9

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|++|+++|+++.+|+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~   48 (111)
T cd04626           2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDL   48 (111)
T ss_pred             CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHH
Confidence            56788999999999999999999999999988999999999998854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.70  E-value=3.6e-05  Score=68.74  Aligned_cols=61  Identities=28%  Similarity=0.281  Sum_probs=52.8

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHH-----hhhcCcceecCCccEEEEeeccceeee
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-----KRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~-----~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ..+...+++++|++  ++.++.+++++.++++.|++     ++...++|+|++++++|+|+.+|++..
T Consensus       126 l~~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a  191 (449)
T TIGR00400       126 LSYSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA  191 (449)
T ss_pred             hCCCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC
Confidence            34577899999998  99999999999999999986     456678899988999999999998753

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.67  E-value=3.8e-05  Score=55.65  Aligned_cols=46  Identities=30%  Similarity=0.565  Sum_probs=41.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.++++..+||+|++|+++|+++.+|+.+
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~   47 (126)
T cd04640           2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLG   47 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhh
Confidence            4578899999999999999999999999997799999999999885

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.67  E-value=4.2e-05  Score=56.00  Aligned_cols=47  Identities=45%  Similarity=0.775  Sum_probs=43.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.++..+||+|++++++|+++..|+.+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~   49 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRR   49 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHH
Confidence            67789999999999999999999999999988999999999998753

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.66  E-value=1.5e-05  Score=67.54  Aligned_cols=57  Identities=26%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      .++.++|.+   +.++.+++++.++++.|.+++...+||+|+.|.++|+||.+|++....
T Consensus       133 ~~l~~l~r~---~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~iv  189 (292)
T PRK15094        133 FSMDKVLRQ---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  189 (292)
T ss_pred             CCHHHHcCC---CcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHh
Confidence            457888866   458999999999999999999999999998899999999999996544

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=4.1e-05  Score=54.81  Aligned_cols=47  Identities=36%  Similarity=0.620  Sum_probs=42.7

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.+++++|.+.+++.+||+|++ |+++|+|+.+|+...
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~   49 (125)
T cd04631           2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKY   49 (125)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHH
Confidence            56788999999999999999999999999987 999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=5.3e-05  Score=51.95  Aligned_cols=48  Identities=46%  Similarity=0.769  Sum_probs=42.9

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+.+...+||+|++++++|+++.+|+....
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~   49 (113)
T cd02205           2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRAL   49 (113)
T ss_pred             CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHH
Confidence            567789999999999999999999999999879999999999988544

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.64  E-value=6.4e-05  Score=52.54  Aligned_cols=44  Identities=32%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             eeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           96 HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        96 ~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+.
T Consensus         4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENA   47 (104)
T ss_pred             eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhh
Confidence            46789999999999999999999999997 999999999998753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.64  E-value=2.9e-05  Score=70.42  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             Eecceeecc-ceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~diM~~~-~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +|+++|... .++.++.+++++.+++++|.+++++.+||+|+   +++++|+||..|+.... ...+..+.++|.+
T Consensus        95 kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-~~~~~~V~dIMt~  169 (502)
T PRK07107         95 RVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR-MSLDTKVKDFMTP  169 (502)
T ss_pred             HHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc-cCCCCCHHHHhCC
Confidence            477777521 15578999999999999999999999999996   58999999999986432 2234456666664

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.62  E-value=4.8e-05  Score=53.08  Aligned_cols=47  Identities=36%  Similarity=0.597  Sum_probs=42.5

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~   48 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVP   48 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHH
Confidence            5778999999999999999999999999997 9999999999988543

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.62  E-value=4.5e-05  Score=53.62  Aligned_cols=46  Identities=28%  Similarity=0.513  Sum_probs=42.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++++++|+++.+|+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~   47 (113)
T cd04615           2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLS   47 (113)
T ss_pred             CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHH
Confidence            4577899999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.60  E-value=6.4e-05  Score=53.15  Aligned_cols=48  Identities=25%  Similarity=0.381  Sum_probs=42.5

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~  141 (172)
                      ....+.+++++.++.+.|.+.++..+||+|+   +|+++|+|+.+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~   53 (105)
T cd04591           3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVAL   53 (105)
T ss_pred             ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHH
Confidence            5677899999999999999999999999997   68999999999987543

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.58  E-value=0.0001  Score=51.36  Aligned_cols=47  Identities=49%  Similarity=0.711  Sum_probs=42.6

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++|+++|+++.+++...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   49 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFE   49 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeec
Confidence            56788999999999999999999999999987999999999998753

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.58  E-value=5.4e-05  Score=52.63  Aligned_cols=46  Identities=35%  Similarity=0.587  Sum_probs=42.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++++.+||+|+ ++++|+++.+|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~   47 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDA   47 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHH
Confidence            4678899999999999999999999999997 999999999998864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.57  E-value=7.1e-05  Score=53.13  Aligned_cols=47  Identities=43%  Similarity=0.742  Sum_probs=42.5

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|++++++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~   48 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDA   48 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHH
Confidence            46788999999999999999999999999988999999999998753

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.56  E-value=5.4e-05  Score=68.78  Aligned_cols=66  Identities=17%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             cceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           86 GDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        86 ~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +..|.+  +++++.+++++.+++++|.+++++.+||+|+   +++++|+||.+|+....  ....++.++|.+
T Consensus       103 ~~gmi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~--~~~~~V~eIMt~  171 (505)
T PLN02274        103 RVGFVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN--DRETKLSEVMTS  171 (505)
T ss_pred             cccccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc--ccCCcHHHHhcc
Confidence            444777  8999999999999999999999999999986   37999999999986432  223444455543

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.54  E-value=6.5e-05  Score=52.53  Aligned_cols=46  Identities=37%  Similarity=0.553  Sum_probs=42.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~   47 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHA   47 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHH
Confidence            5678899999999999999999999999997 999999999998864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.52  E-value=6.6e-05  Score=53.56  Aligned_cols=45  Identities=29%  Similarity=0.469  Sum_probs=41.3

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~   46 (122)
T cd04637           2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLK   46 (122)
T ss_pred             CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHH
Confidence            5678999999999999999999999999996 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.50  E-value=6.5e-05  Score=52.65  Aligned_cols=49  Identities=33%  Similarity=0.451  Sum_probs=43.1

Q ss_pred             ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           93 EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        93 ~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..++.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~   50 (114)
T cd04604           2 DALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRAL   50 (114)
T ss_pred             CcccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHH
Confidence            3667889999999999999988889999999889999999999887543

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.48  E-value=0.00012  Score=51.88  Aligned_cols=46  Identities=37%  Similarity=0.576  Sum_probs=41.5

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+   +|+++|+++.+|+..
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhh
Confidence            5678899999999999999999999999996   689999999999874

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.48  E-value=0.00011  Score=51.14  Aligned_cols=46  Identities=35%  Similarity=0.580  Sum_probs=41.7

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.++.++.+++..|.+.+++.+||++++++++|+++.+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~   47 (106)
T cd04638           2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLR   47 (106)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHh
Confidence            5778899999999999999989999999997799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.48  E-value=9.7e-05  Score=52.15  Aligned_cols=47  Identities=40%  Similarity=0.578  Sum_probs=42.3

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++++++++.++++.|.+.++..+||+|+ |+++|+++..|+....
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~   48 (122)
T cd04585           2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLAS   48 (122)
T ss_pred             CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhh
Confidence            5678899999999999999999999999997 9999999999988643

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.47  E-value=0.00012  Score=51.69  Aligned_cols=46  Identities=24%  Similarity=0.382  Sum_probs=41.6

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.+.++..++|+|++|+++|+++.+|+.+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~   48 (113)
T cd04607           3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRR   48 (113)
T ss_pred             cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHH
Confidence            4577899999999999999999999999998899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.47  E-value=0.0001  Score=54.91  Aligned_cols=46  Identities=39%  Similarity=0.621  Sum_probs=42.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~   47 (143)
T cd04634           2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKL   47 (143)
T ss_pred             CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHH
Confidence            5778999999999999999999999999997 999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.45  E-value=0.00013  Score=65.78  Aligned_cols=58  Identities=26%  Similarity=0.345  Sum_probs=51.7

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ....+++.++|.+  +++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+..
T Consensus        84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~  141 (475)
T TIGR01303        84 TVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLG  141 (475)
T ss_pred             HHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhc
Confidence            3456788899998  999999999999999999999999999988 478999999999864

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.43  E-value=0.00013  Score=51.13  Aligned_cols=44  Identities=32%  Similarity=0.624  Sum_probs=40.7

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll  138 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+ |+++|+++..|++
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~   45 (113)
T cd04622           2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIV   45 (113)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHH
Confidence            5678999999999999999999999999997 9999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.41  E-value=0.00012  Score=51.07  Aligned_cols=47  Identities=32%  Similarity=0.531  Sum_probs=41.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++.+|+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~   48 (111)
T cd04611           2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLL   48 (111)
T ss_pred             CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHH
Confidence            4678899999999999999989999999986 8999999999988543

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.41  E-value=0.00015  Score=50.71  Aligned_cols=45  Identities=38%  Similarity=0.597  Sum_probs=41.2

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.++++++++.+.|.+.+++.+||+|+ ++++|+++..|+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~   46 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRN   46 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHH
Confidence            5678899999999999999989999999996 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.40  E-value=0.00012  Score=51.58  Aligned_cols=56  Identities=39%  Similarity=0.677  Sum_probs=48.2

Q ss_pred             ceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC
Q 030753           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG  145 (172)
Q Consensus        87 diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~  145 (172)
                      ++|.+  ++.++.++.++.++...|.++++..+||++. ++++|++|.+|+.+......
T Consensus         3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~   58 (117)
T COG0517           3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGG   58 (117)
T ss_pred             ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccC
Confidence            34556  8899999999999999999999999999984 48999999999997765443

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.40  E-value=0.00015  Score=50.85  Aligned_cols=45  Identities=40%  Similarity=0.554  Sum_probs=40.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++.+++++.++++.|.+++.+.+||+++ ++++|+|+.+|++.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~   46 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIAL   46 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHH
Confidence            5678899999999999999999999999996 99999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.39  E-value=0.00015  Score=51.59  Aligned_cols=46  Identities=30%  Similarity=0.551  Sum_probs=41.6

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.++..+||+|+ |+++|+++..|+.+.
T Consensus         2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~   47 (121)
T cd04633           2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADA   47 (121)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHh
Confidence            5678899999999999999999999999996 999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.39  E-value=0.00015  Score=50.80  Aligned_cols=46  Identities=30%  Similarity=0.551  Sum_probs=41.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++..++++.++.+.|.+.+++.+||+|+ |+++|+|+..|+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~   48 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKA   48 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHH
Confidence            5778899999999999999999999999997 999999999998753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.39  E-value=0.00028  Score=48.93  Aligned_cols=45  Identities=40%  Similarity=0.716  Sum_probs=40.8

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|+..
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~   47 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLG   47 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            5778899999999999999888888999986 99999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.35  E-value=0.00014  Score=50.99  Aligned_cols=43  Identities=42%  Similarity=0.460  Sum_probs=37.4

Q ss_pred             ecccccHHHHHHHHHHhh-----hcCcceecCCccEEEEeeccceeee
Q 030753           98 VKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        98 v~~~~sl~eal~~m~~~~-----i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      +.+++++.++++.|.+++     +..+||+|++|+++|+|+.+|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~   49 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA   49 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC
Confidence            578899999999999877     4678999978999999999998763

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.33  E-value=7.4e-05  Score=66.06  Aligned_cols=56  Identities=20%  Similarity=0.166  Sum_probs=49.9

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .++.++|.+   +.++.+++++.++++.|++++....+|+|+.|.++|+||.+|++...
T Consensus       255 ~~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileei  310 (408)
T TIGR03520       255 FDWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEI  310 (408)
T ss_pred             CCHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHH
Confidence            457788755   67899999999999999999999999999879999999999999654

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.32  E-value=0.0002  Score=50.23  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=41.2

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.++++++++++.|.+.+.+.++|+|+ ++++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~   47 (111)
T cd04589           2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDA   47 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHH
Confidence            5677899999999999999999999999997 899999999998754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.29  E-value=7.2e-05  Score=66.30  Aligned_cols=84  Identities=14%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             ccchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      ++++++..++..+.+....+....... .....++.++|.+  ++.++.+++++.+++++|.+++   .|||+++++++|
T Consensus       368 ~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liG  442 (454)
T TIGR01137       368 QLPVVTEAGKVLGSVTLRELLSALFAGKANPDDAVSKVMSK--KFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIG  442 (454)
T ss_pred             EEEEEcCCCeEEEEEEHHHHHHHHhccCCCcCCCHHHhcCC--CCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEE
Confidence            445555444555555544443321111 1234579999988  8889999999999999998754   355655789999


Q ss_pred             Eeeccceeee
Q 030753          131 LVSDYDLLAL  140 (172)
Q Consensus       131 IVt~~Dll~~  140 (172)
                      +||.+|+++.
T Consensus       443 vvt~~dll~~  452 (454)
T TIGR01137       443 VVTKIDLLSF  452 (454)
T ss_pred             EEEHHHHHHh
Confidence            9999998753

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.22  E-value=0.00022  Score=50.53  Aligned_cols=46  Identities=33%  Similarity=0.505  Sum_probs=40.9

Q ss_pred             eeeeecccccHHHHHHHHHHhh-hcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~-i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+ ++.+||+|+ |+++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~   48 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMEL   48 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHH
Confidence            5667899999999999998877 889999998 999999999998743

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.20  E-value=0.00034  Score=48.99  Aligned_cols=46  Identities=37%  Similarity=0.525  Sum_probs=41.1

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~   47 (112)
T cd04802           2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKK   47 (112)
T ss_pred             CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            5677899999999999999999999999985 599999999998853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.18  E-value=0.00029  Score=62.23  Aligned_cols=74  Identities=28%  Similarity=0.335  Sum_probs=61.5

Q ss_pred             CceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           69 GTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        69 g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      |.+..++.. .+.....+.++|++  ++++...+.+++++-+++++++...+||||++|.++.++++.||.+...++
T Consensus       156 G~vtsrdi~f~~~~~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~~yP  230 (503)
T KOG2550|consen  156 GIITSRDIQFLEDNSLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNRDYP  230 (503)
T ss_pred             EEEehhhhhhhhcccchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhcCCC
Confidence            444444442 24466789999999  778899999999999999999999999999999999999999998765544

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.98  E-value=0.0006  Score=48.02  Aligned_cols=46  Identities=22%  Similarity=0.450  Sum_probs=39.1

Q ss_pred             eeeeecccccHHHHHHHHHHhh-hcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKR-ITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~-i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++ ...++|+| +|+++|+++..|+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~   48 (115)
T cd04620           2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRL   48 (115)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHH
Confidence            5678899999999999998888 56677777 5899999999998853

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.93  E-value=0.00051  Score=59.96  Aligned_cols=55  Identities=25%  Similarity=0.438  Sum_probs=49.2

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .+.+.|..  ...++.+++++.+++..|.+++.. +||+|++|+++|+|+..+++...
T Consensus       303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~  357 (363)
T TIGR01186       303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDAL  357 (363)
T ss_pred             chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHH
Confidence            46777877  788899999999999999999998 99999899999999999988643

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=96.90  E-value=0.0009  Score=46.78  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=39.2

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++.++.+++++.++++.|.+++...++|.+ +|+++|+++.+|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~   47 (112)
T cd04625           2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQA   47 (112)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHH
Confidence            467789999999999999888877777666 5899999999998854

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=96.85  E-value=0.00041  Score=54.27  Aligned_cols=59  Identities=22%  Similarity=0.365  Sum_probs=50.2

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +...+.+|.++|..  .+.++++++++..+-+++.++.  .+.|++ +|+++||+|..|+++..
T Consensus       125 e~i~~~~vr~vM~e--~fP~Vs~~~~l~vI~~LL~~~~--AVlV~e-~G~~vGIITk~DI~k~~  183 (187)
T COG3620         125 ESIRSLRVREVMGE--PFPTVSPDESLNVISQLLEEHP--AVLVVE-NGKVVGIITKADIMKLL  183 (187)
T ss_pred             cchhhhhHHHHhcC--CCCcCCCCCCHHHHHHHHhhCC--eEEEEe-CCceEEEEeHHHHHHHH
Confidence            34577899999998  9999999999999999998776  466774 79999999999998643

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.77  E-value=0.0007  Score=50.47  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=30.0

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~  125 (172)
                      +++++.+++++.+++++|.++++..+||+|++
T Consensus        87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~  118 (133)
T cd04592          87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG  118 (133)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence            78899999999999999999999999999854

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.72  E-value=0.00055  Score=60.51  Aligned_cols=57  Identities=23%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~  143 (172)
                      .+.+++..  ...++.+++++.+++..+.+.... +||+|++|+++|+|+..++++....
T Consensus       338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~  394 (400)
T PRK10070        338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDR  394 (400)
T ss_pred             chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            57777777  788999999999999999987766 9999989999999999999875543

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.67  E-value=0.0012  Score=58.14  Aligned_cols=54  Identities=31%  Similarity=0.470  Sum_probs=48.1

Q ss_pred             ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc
Q 030753           91 TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus        91 ~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~  144 (172)
                      .++.+++|.++.++.++++.|..+++.++.|||++|.++|+|+..|++.+....
T Consensus       308 ~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~  361 (381)
T KOG1764|consen  308 RFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT  361 (381)
T ss_pred             ccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence            344789999999999999999999999999999889999999999999765443

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=95.71  E-value=0.009  Score=52.60  Aligned_cols=48  Identities=38%  Similarity=0.616  Sum_probs=44.1

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++..+..++++.+++++|.+++++.+||||.+|+.+|+.+..|+....
T Consensus       238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~  285 (381)
T KOG1764|consen  238 NIASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLA  285 (381)
T ss_pred             hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhh
Confidence            578899999999999999999999999999888889999999988543

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=95.58  E-value=0.0087  Score=53.15  Aligned_cols=61  Identities=33%  Similarity=0.419  Sum_probs=49.3

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceeeeecccCCCCCCCCCCcC
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~  156 (172)
                      +++++.|+.++.++++.-..+++..+||.++.   .+++|+||.+|+--.  ........++|+++
T Consensus       117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~--~~~~~~~~~vmt~~  180 (503)
T KOG2550|consen  117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL--EDNSLLVSDVMTKN  180 (503)
T ss_pred             CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh--hcccchhhhhcccc
Confidence            67889999999999999999999999999643   589999999998754  34455556666554

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.01  Score=53.32  Aligned_cols=60  Identities=42%  Similarity=0.448  Sum_probs=52.5

Q ss_pred             CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhh-----hcCcceecCCccEEEEeeccceee
Q 030753           78 PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        78 ~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~-----i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ..+..-+++.+|+.  +++++.++.|+.+++..+++.+     +..+.|+|++++++|+++.++++.
T Consensus       127 l~y~e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~  191 (451)
T COG2239         127 LSYPEDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLT  191 (451)
T ss_pred             cCCChhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhc
Confidence            34567789999999  9999999999999999999543     567889998899999999999884

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.37  E-value=0.012  Score=54.77  Aligned_cols=57  Identities=18%  Similarity=0.271  Sum_probs=51.6

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +.+..+|++  .|.++.+++++..+..++++-|+.++.|+++.++++|++|++|+.+..
T Consensus       690 vDl~p~~n~--sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  690 VDLHPFMNP--SPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             cccccccCC--CCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            456678888  899999999999999999999999999999888999999999998644

>PRK11573 hypothetical protein; Provisional

Probab=95.33  E-value=0.013  Score=52.10  Aligned_cols=48  Identities=23%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++.++.++.++.++++.|++++.....|+|+-|...|+||.+|++...
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEei  310 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEI  310 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHH
Confidence            578899999999999999999999999999889999999999999644

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=94.66  E-value=0.025  Score=50.28  Aligned_cols=49  Identities=24%  Similarity=0.184  Sum_probs=44.4

Q ss_pred             eeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           94 ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        94 ~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ++..+.++.++.++++.|++.+.....|+|+-|.+.|+||..|++....
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIv  328 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIV  328 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHh
Confidence            5788999999999999999999999999998899999999999996543

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.41  E-value=0.016  Score=53.80  Aligned_cols=66  Identities=26%  Similarity=0.400  Sum_probs=56.0

Q ss_pred             cCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-----ccEEEEeeccceeeee
Q 030753           74 NSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLLALD  141 (172)
Q Consensus        74 ~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-----~~lvGIVt~~Dll~~~  141 (172)
                      |+-+....+++++|+|.+  ++++++.-+.+..+.+.++...+..+||+|+.     +++.|++-+..++...
T Consensus       573 ~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL  643 (762)
T KOG0474|consen  573 WEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL  643 (762)
T ss_pred             CCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence            444456678899999999  99999999999999999999999999999853     4788999888877443

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=92.16  E-value=0.082  Score=46.62  Aligned_cols=58  Identities=22%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+-.|++.-..+|.+++.++++.+-+..|.+++-..-.|||+=|.+.|+||.+|++.-
T Consensus       265 ~~k~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEE  322 (423)
T COG4536         265 FTKEDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEE  322 (423)
T ss_pred             ccHhHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHH
Confidence            4556666544478999999999999999999988888899977999999999999854

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=91.79  E-value=0.089  Score=46.36  Aligned_cols=52  Identities=15%  Similarity=0.313  Sum_probs=42.8

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+.+ +..  +..++.+++++.+++..+.+.+. -++|+|+ |+++|+|+..+++..
T Consensus       327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~  378 (382)
T TIGR03415       327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHA  378 (382)
T ss_pred             chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHH
Confidence            4566 455  67889999999999998888775 4788885 999999999998754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=90.68  E-value=0.19  Score=47.84  Aligned_cols=59  Identities=27%  Similarity=0.352  Sum_probs=51.9

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--ccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~lvGIVt~~Dll~~~  141 (172)
                      ..+.|+++|.+  ++.++..++|..|..+.+....+..+|+||+.  ..++|.|.++.|....
T Consensus       586 h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll  646 (931)
T KOG0476|consen  586 HTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALL  646 (931)
T ss_pred             eEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHH
Confidence            56899999999  99999999999999999988779999999854  4699999999987543

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=89.73  E-value=0.22  Score=46.49  Aligned_cols=57  Identities=14%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .....+++|..  .+.++...++.+.+++++++-+...+-|. ++|++.|+||++|+++.
T Consensus       637 ~~~~lk~il~~--tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  637 SRLDLKDILDM--TPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRH  693 (696)
T ss_pred             CCcCceeeccC--CcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHh
Confidence            44677889888  88999999999999999999999887665 47999999999998853

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=87.12  E-value=0.48  Score=40.21  Aligned_cols=39  Identities=28%  Similarity=0.401  Sum_probs=32.6

Q ss_pred             cccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753          101 TTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus       101 ~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      .....+++..+...+.+.+||+|++|+++|.||..+++.
T Consensus       269 ~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~  307 (309)
T COG1125         269 GFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD  307 (309)
T ss_pred             chhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence            344455777788889999999999999999999999864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=86.23  E-value=0.45  Score=41.54  Aligned_cols=51  Identities=24%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             eeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        88 iM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .+.+  .+.++.+++.+.+.+..+.+... .++|+|++++++|+++...++.+.
T Consensus       332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL  382 (386)
T COG4175         332 ALID--DVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEAL  382 (386)
T ss_pred             cccc--cccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHH
Confidence            4455  67788999999999988887765 579999999999999999887543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=85.72  E-value=0.62  Score=41.30  Aligned_cols=58  Identities=24%  Similarity=0.192  Sum_probs=44.9

Q ss_pred             eEecceeeccce-eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           83 YTVGDFMTTKEE-LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        83 ~~V~diM~~~~~-~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .++.++|.+... .+...++....+++..|.+.+.+.+.|+|++++++|+++.+++.+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  332 (400)
T PRK10070        274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTA  332 (400)
T ss_pred             cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhh
Confidence            456677754101 1223466788999999999999999999989999999999998754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=83.19  E-value=1.4  Score=38.57  Aligned_cols=47  Identities=21%  Similarity=0.278  Sum_probs=39.9

Q ss_pred             eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .....++.+..++++.|...+.+.+.|+|+++++.|+++.+++..+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  298 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQAR  298 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHh
Confidence            34456677899999999999999999999889999999999987543

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=81.49  E-value=0.74  Score=38.54  Aligned_cols=87  Identities=21%  Similarity=0.187  Sum_probs=63.3

Q ss_pred             EeecccchhhhhccCceeeecCceeccCCC----CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753           48 VLATSSDRVSALRRSSAVFASGTLTANSAA----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID  123 (172)
Q Consensus        48 ~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd  123 (172)
                      +-|--||++...+   ..+ -|.++++.+.    .......++++..+   .+.+++.-.+...++-++.++.....|+|
T Consensus        98 saHSRfPVi~edk---D~v-~GIL~AKDLL~~~~~~~~~F~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViD  170 (293)
T COG4535          98 SAHSRFPVISEDK---DHV-EGILLAKDLLPFMRSDAEPFDIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVID  170 (293)
T ss_pred             hccccCCcccCCc---hhh-hhhhhHHHHHHHhcCCcccccHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEe
Confidence            3455677776533   334 5667777662    22344667777655   67788888889999999988888888999


Q ss_pred             CCccEEEEeeccceeeee
Q 030753          124 DDWKLVGLVSDYDLLALD  141 (172)
Q Consensus       124 ~~~~lvGIVt~~Dll~~~  141 (172)
                      +=|-+-|+||..|++...
T Consensus       171 EfGgVsGLVTIEDiLEqI  188 (293)
T COG4535         171 EFGGVSGLVTIEDILEQI  188 (293)
T ss_pred             ccCCeeeeEEHHHHHHHH
Confidence            779999999999998644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
4gqv_A	166	Crystal Structure Of Cbs-pair Protein, Cbsx1 From A		1e-40
3sl7_A	180	Crystal Structure Of Cbs-Pair Protein, Cbsx2 From A		5e-31
4gqw_A	152	Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop		6e-29
2cu0_A	486	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		4e-06
1vrd_A	494	Crystal Structure Of Inosine-5'-Monophosphate Dehyd		1e-05

>pdb|4GQV|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 From Arabidopsis Thaliana Length = 166

Iteration: 1
 Score =  162 bits (409), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 81/85 (95%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKVY 164
           LDSISGSGR +NSMFPEVDSTWK +
Sbjct: 62  LDSISGSGRTENSMFPEVDSTWKTF 86

>pdb|3SL7|A Chain A, Crystal Structure Of Cbs-Pair Protein, Cbsx2 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 72/82 (87%)
Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDF T ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFXTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63
Query: 143 ISGSGRADNSMFPEVDSTWKVY 164
           ISG  + D ++FP+VDSTWK +
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTF 85

>pdb|4GQW|A Chain A, Crystal Structure Of Cbs-pair Protein, Cbsx1 (loop Deletion) From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 67/85 (78%), Gaps = 14/85 (16%)
Query: 80  SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
           SGVYTVG+FMT KE+LHVVKPTTTVDEALE+LVE RITGFPVID+DWKLVGLVSDYDLLA
Sbjct: 2   SGVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLA 61
Query: 140 LDSISGSGRADNSMFPEVDSTWKVY 164
           LDS               DSTWK +
Sbjct: 62  LDS--------------GDSTWKTF 72

>pdb|2CU0|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 486

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 69  GTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           G +T    A   G   V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KL
Sbjct: 137 GIITKKDIAAREG-KLVKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKL 193
Query: 129 VGLVSDYDLLALDSISGSGRADNS 152
           VGL++  DL+A      + R +N 
Sbjct: 194 VGLITMSDLVARKKYKNAVRDENG 217

>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18 A Resolution Length = 494

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL++  D++++
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSV 212

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	3e-26
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-17
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-20
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-10
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	1e-10
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	4e-20
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	2e-11
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	1e-19
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	3e-10
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	3e-19
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-12
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	7e-17
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	6e-13
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	7e-16
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	3e-11
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-15
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	6e-12
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	9e-15
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	6e-13
1pbj_A	125	Hypothetical protein; structural genomics, domain,	7e-14
1pbj_A	125	Hypothetical protein; structural genomics, domain,	9e-12
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	7e-14
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	5e-13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	1e-13
1vr9_A	213	CBS domain protein/ACT domain protein; structural	5e-11
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	4e-13
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-12
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	4e-13
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-11
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-13
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	4e-10
1pvm_A	184	Conserved hypothetical protein TA0289; structural	5e-13
1pvm_A	184	Conserved hypothetical protein TA0289; structural	6e-13
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	5e-13
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-12
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	9e-11
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-10
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	8e-05
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-10
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-09
3ddj_A	296	CBS domain-containing protein; structural genomics	8e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	9e-12
3ddj_A	296	CBS domain-containing protein; structural genomics	1e-10
3ddj_A	296	CBS domain-containing protein; structural genomics	4e-09
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-10
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	2e-09
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	1e-04
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-11
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	4e-07
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	4e-11
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	8e-08
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	5e-11
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	6e-06
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	5e-11
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	8e-11
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	1e-10
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	8e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	2e-10
4fry_A	157	Putative signal-transduction protein with CBS DOM;	3e-09
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	2e-10
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	3e-08
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	4e-04
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-10
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	3e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-10
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	4e-08
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	8e-10
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	5e-05
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	2e-09
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	9e-06
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	2e-09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	6e-07
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	3e-09
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	9e-07
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	9e-09
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	1e-07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	1e-07
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	2e-05
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	1e-07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	4e-05
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-07
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	1e-06
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	2e-07
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	5e-06
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	4e-07
3fio_A	70	A cystathionine beta-synthase domain protein fused	6e-06
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-05
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	3e-04

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 97.5 bits (243), Expect = 3e-26
 Identities = 58/90 (64%), Positives = 76/90 (84%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           YTVGDFMT ++ LHVVKP+T+VD+ALE+LVEK++TG PVIDD+W LVG+VSDYDLLALDS
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 143 ISGSGRADNSMFPEVDSTWKVYIQRGAEVA 172
           ISG  + D ++FP+VDSTWK + +    ++
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLIS 93

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 74.4 bits (183), Expect = 2e-17
 Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 10/84 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL----- 138
            VGD MT      VV+ +T +++A  +L+E +    PV+D D KL+G+++  +++     
Sbjct: 99  VVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ 156

Query: 139 ---ALDSISGSGRADNSMFPEVDS 159
                DSISG  + D ++FP+VDS
Sbjct: 157 IKRNADSISGRSQNDTNLFPDVDS 180

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 82.1 bits (203), Expect = 1e-20
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            V D M + E++  V+    ++ AL +LV+   +  PV+D  +KL GL+S   +  LD I
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMI--LDGI 73

Query: 144 SGSGRADNSMFPEV 157
            G  R +     E+
Sbjct: 74  LGLERIEFERLEEM 87

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V   M     + V+K   +  +ALE+ ++        +++D    G+++   +L
Sbjct: 87  MKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAIL 138

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 81.3 bits (201), Expect = 2e-20
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV  F+   +++  V+P   +D AL +L +   +  PV+D  +KL GL+S   ++
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMM 66

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 9/56 (16%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V + M     +  ++   ++ +A+ ++V        V +DD    G+ +  ++L
Sbjct: 83  MKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVL 134

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 79.4 bits (196), Expect = 1e-19
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    +  ++SI
Sbjct: 15  TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMI--MNSI 72

Query: 144 SGSGRADNSMFPEV 157
            G  R +     ++
Sbjct: 73  FGLERIEFEKLDQI 86

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 55.1 bits (133), Expect = 3e-10
 Identities = 8/56 (14%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            TV + M T   +  +     + +   +++        V +D+    G+ +   +L
Sbjct: 86  ITVEEVMLTD--IPRLHINDPIMKGFGMVINNGF--VCVENDEQVFEGIFTRRVVL 137

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 78.9 bits (195), Expect = 3e-19
 Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 2/75 (2%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
           V  V   ++   +  VV+  T ++E ++ ++E  +T    +  D KLVG++    LL + 
Sbjct: 15  VKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVS 72

Query: 142 SISGSGRADNSMFPE 156
                G         
Sbjct: 73  GFHFFGFIPKEELIR 87

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
                +         F        S+          + M        V   T ++EAL++
Sbjct: 64  PVMHLLKVSGFHFFGFIPKEELIRSSMKRLIAKNASEIMLD---PVYVHMDTPLEEALKL 120

Query: 111 LVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +++  I   PV+D+  ++VG ++  ++L
Sbjct: 121 MIDNNIQEMPVVDEKGEIVGDLNSLEIL 148

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 71.8 bits (177), Expect = 7e-17
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 84  TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L
Sbjct: 9   PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 66

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 61.8 bits (151), Expect = 6e-13
 Identities = 13/59 (22%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 78  SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 136

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 69.2 bits (170), Expect = 7e-16
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT    +   K    V EA E +++ +I+  PVIDD+ K++G+V+  D+ 
Sbjct: 9   KVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIG 61

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILV-----EKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+GD MT   ++  +    ++ EA++ +      E+ I   PV+D + KLVG++SD D++
Sbjct: 74  TIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDII 131

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLL
Sbjct: 6   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 58

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 62.3 bits (152), Expect = 6e-13
 Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + + M T  ++  V P   + E+   + + +I   PV+  D  LVG+++D D +    +
Sbjct: 79  PLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFVTIAIN 135

Query: 143 ISGSGRA 149
           +      
Sbjct: 136 LLELQEE 142

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 63.7 bits (156), Expect = 7e-14
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T  ++  +  T ++++ L   VE       V+ +    VG+V+ +D+L
Sbjct: 2   RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVL 53

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 57.9 bits (141), Expect = 9e-12
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + M     L  + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 66  KVWEVMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 117

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 63.7 bits (156), Expect = 7e-14
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V D ++            ++ EA +IL++  I   P++D+  KLVG+++ +D+ 
Sbjct: 3   VKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIA 54

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 61.4 bits (150), Expect = 5e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T+ + MT    +        VD     + +  I+G PV+DD  ++VG+V+  D+ 
Sbjct: 63  TIEEIMT--RNVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDIS 115

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 65.1 bits (159), Expect = 1e-13
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD 141
            V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+  DLL LD
Sbjct: 14  KVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD 69

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
           +V + ++       V     +  AL + +E +    PV+D++ +L G VS +D L AL  
Sbjct: 73  SVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE 130

Query: 143 ISGSGRA 149
                  
Sbjct: 131 ALAMDVP 137

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V DF +      V+    +V +A+  +  + +    V+D D  LVG++S  DLL
Sbjct: 18  QVKDFQSIP---VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLL 69

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLL 138
            V   MT    + V +    V +  + L+EK+I   PVI D    ++++G V+  ++ 
Sbjct: 82  PVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMT 139

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D++
Sbjct: 9   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV 61

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           T G+       ++ V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 75  TAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 126

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 61.9 bits (151), Expect = 4e-13
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +MT K  L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++
Sbjct: 8   PIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDII 60

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   MT    L      T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 73  PVERIMTRN--LITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 124

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 62.8 bits (153), Expect = 5e-13
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+  ++
Sbjct: 10  RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSII 62

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 62.8 bits (153), Expect = 6e-13
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M     +  VK    V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 76  PIRLVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 128

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 61.4 bits (150), Expect = 5e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              +FMT    L  ++  + +  AL ++ +  I   PV+DD   L G++S  D+ 
Sbjct: 68  KAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDIT 120

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 59.9 bits (146), Expect = 2e-12
 Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V ++M T  ++  V     +++  +++ EK I    V+D + K VG++++ D++
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIV 56

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 63.0 bits (153), Expect = 2e-12
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
           +   D + T  +L V   +  V +A   LV   +   P+ D      VG+++  D + +
Sbjct: 35  HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI 93

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 58.0 bits (140), Expect = 9e-11
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 2/121 (1%)

Query: 35  CLLLSRPGCRVFSVLATSSDRVSA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMT-TK 92
              L R       V+   S      L     +            P     ++ +    T 
Sbjct: 141 VSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTY 200

Query: 93  EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNS 152
             + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +       D S
Sbjct: 201 ANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVS 260

Query: 153 M 153
           +
Sbjct: 261 V 261

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 55.3 bits (133), Expect = 8e-10
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   +  +    E +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 260 SVTKALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 318

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 10/68 (14%), Positives = 27/68 (39%), Gaps = 1/68 (1%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSISGSG 147
             + + L  + P  ++ +A+  L+  +I   PVID +    + +++   +L    +  + 
Sbjct: 122 QDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKLFITE 181

Query: 148 RADNSMFP 155
                   
Sbjct: 182 FPKPEFMS 189

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 61.3 bits (149), Expect = 6e-12
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + M    ++   K    + +  EI+V   I   PV+D++ ++ G++++ D+L
Sbjct: 224 RMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVL 276

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 60.2 bits (146), Expect = 1e-11
 Identities = 19/80 (23%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL--ALD 141
            V + M     +  +K    +DEA+E  + K + G P+++D+ +L+ L+++ D++   LD
Sbjct: 85  PVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD 142

Query: 142 SISGSGRADNSMFPEVDSTW 161
            I  +   D+ +  +V    
Sbjct: 143 KIDENEVIDDYITRDVIVAT 162

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + D++T   ++ V  P   + +    +V       PV+ +  +LVG+++  D +
Sbjct: 147 NEVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFI 200

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLL 138
           +      K  +  V PTTT+ +AL  + E +    PV++  + K+VG+++  D++
Sbjct: 6   MKIAQNKK--IVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIV 58

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 60.9 bits (148), Expect = 8e-12
 Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 77  APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
                ++ V  FM+TK  +  +     +D+A+++++ +     PVIDDD K+VG+V+  +
Sbjct: 150 KDLDEIFPVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVN 207

Query: 137 LL 138
            +
Sbjct: 208 AI 209

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 60.9 bits (148), Expect = 9e-12
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDS 142
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L     
Sbjct: 94  PIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYKD 151

Query: 143 ISGSGRADNSMFPEVDSTW 161
           +         M  +V + +
Sbjct: 152 LDEIFPVKVFMSTKVQTIY 170

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T   L  +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 228 VVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 280

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 53.2 bits (128), Expect = 4e-09
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +   M       ++     +  A + + E  I    V ++  K+ GL++  DLL
Sbjct: 21  NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLL 71

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 60.6 bits (147), Expect = 1e-11
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +   +    ++ VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 62  LAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 57.1 bits (138), Expect = 2e-10
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT   ++ V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 222 PVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 274

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V   MT       +    T + ALE+  + ++  FPV++ + KLVG++S   +L
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRIL 54

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + DLL
Sbjct: 127 EIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLL 179

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 60.0 bits (145), Expect = 2e-11
 Identities = 14/52 (26%), Positives = 32/52 (61%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L L
Sbjct: 194 IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGL 245

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 56.1 bits (135), Expect = 4e-10
 Identities = 13/59 (22%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 84  TVGDFMT----TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +       E ++       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 257 SVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 315

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 47.6 bits (113), Expect = 4e-07
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
            T  D +     L V+  +  V ++L +L++  I   P+ D    +  GL++  D + +
Sbjct: 30  KTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINV 88

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 58.8 bits (141), Expect = 4e-11
 Identities = 16/52 (30%), Positives = 31/52 (59%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           D++ TK+ L  V     V++    + E R + +PVID++ K+VG ++ + L+
Sbjct: 188 DYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLI 239

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* Length = 245

 Score = 49.5 bits (117), Expect = 8e-08
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
            V D      ++  + P  ++  A  I+ +K +   PV D +  L+G++S  ++
Sbjct: 8   KVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNI 59

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 57.6 bits (139), Expect = 5e-11
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+      +LVG V   DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 138 L 138
           +
Sbjct: 72  I 72

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 109 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 160

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 80  SGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + TV   +  K   +  + P  +V  A++ +    I    V+ D+ KLVG++++ D  
Sbjct: 3   GHMKTVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFS 61

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 55.7 bits (135), Expect = 8e-11
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT +  +  V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 75  QVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 126

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +V   MT    +   +  +T D+ +EI+   R    PV ++  +L G++S  D++
Sbjct: 94  SVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEENG-RLAGIISIGDVV 145

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 53.9 bits (130), Expect = 8e-10
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D +  K  ++  V P  ++ EA   L   +I    V D D  ++G+ ++ DL+
Sbjct: 25  FVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLV 80

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT K  +  V+P+ + DE + ++ E R+   PV+D   KL+GL+S  DL+
Sbjct: 79  RVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLDGG-KLIGLISIGDLV 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 77  APSSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
            P S   TV   +  K      ++ V     V +A++++ EK I    V+D D  + G+V
Sbjct: 1   GPGSMSTTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIV 59

Query: 133 SDYDLL 138
           ++ D  
Sbjct: 60  TERDYA 65

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 84  TVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +VG+ +  +    + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 252 SVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 310

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 91  TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
           T   L      T V + +++L EK I+  P+++ +  L+ +    D++ L
Sbjct: 191 TWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHL 240

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL 140
           T  D + T   L V   T  V  +L +L    I   P+ D +  K  GL++  D + +
Sbjct: 23  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV 80

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 55.0 bits (132), Expect = 3e-10
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLL 138
            V  FM     +  +   T ++E ++++    +T +P+++      LVG+V    L+
Sbjct: 14  RVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLV 68

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            +     T+     +   TT+ +A  +     +    V     + VG VS  ++ 
Sbjct: 89  ILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTSRG-RAVGCVSWVEMK 142

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 53.6 bits (129), Expect = 5e-10
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 5/76 (6%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
           T      T  +  V     +  +A   L        PV+D + + +G+V    LL     
Sbjct: 6   TFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKG 62

Query: 144 SGSG--RADNSMFPEV 157
             +   +    +   V
Sbjct: 63  WPTVKEKLGEELLETV 78

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA 139
            +G+ +     +   +P   + + L  +   + +  P+ D+D +  G+VS   +L 
Sbjct: 69  KLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILG 122

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 55.7 bits (135), Expect = 8e-10
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V D MT   +L      T + EA +I+ EK++   P+IDDD  L  +V
Sbjct: 163 VSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIV 210

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Length = 503

 Score = 41.4 bits (98), Expect = 5e-05
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDL 137
           VKP  T  + L I          V DD      L+GLV+  D 
Sbjct: 110 VKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDY 152

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + + MT + EL V     T+ EA EIL   +    P+++D  +LV +++  DL
Sbjct: 175 LSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDCDELVAIIARTDL 227

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Length = 514

 Score = 43.7 bits (104), Expect = 9e-06
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW---KLVGLVSDYDL 137
           V+ P+ TV + LE  +    +G P+ +      KLVG+V+  D+
Sbjct: 120 VLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDI 163

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 54.0 bits (131), Expect = 2e-09
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT +E+L V  P  ++++A EIL + RI   P++  D KLVGL+
Sbjct: 157 IKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLI 204

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Length = 494

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V P  TV EA++++ E +I G PV+D++ +LVGL+++ D+
Sbjct: 108 VTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDV 147

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 54.0 bits (131), Expect = 3e-09
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V   MT KE L  VK   T  E  E + + R+    V++D+++L G++
Sbjct: 151 VAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLKGMI 198

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Length = 496

 Score = 46.7 bits (112), Expect = 9e-07
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           V+P  T+ + +E+       GFPV+ ++ +LVG+++  D+
Sbjct: 102 VRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDV 141

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 50.3 bits (121), Expect = 9e-09
 Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                  +      V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 72  PAMPIANS---PITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 47.6 bits (114), Expect = 1e-07
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLL 138
              + +        +  T T+ E    L + R+    +   D+  + V +VS+ D+L
Sbjct: 6   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDIL 60

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + D MT KE+L      TT+ EA +IL + +I   P++D++  L GL+
Sbjct: 177 ISDVMT-KEQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLI 223

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 42.5 bits (101), Expect = 2e-05
 Identities = 14/42 (33%), Positives = 28/42 (66%), Gaps = 2/42 (4%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDL 137
           + P   V +A  ++ + RI+G PV++  D+ KLVG++++ D+
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDM 167

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           + + MT  E L      T ++ A  IL E RI   P++D+  +L GL+
Sbjct: 154 ISEHMT-SEHLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLI 200

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 Length = 491

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 2/42 (4%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDL 137
           + P   V EA E++   RI+G P+++   + KLVG++++ D+
Sbjct: 103 LTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDM 144

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 47.5 bits (114), Expect = 1e-07
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKR--ITGFPVIDDDWKLVGLVSDYDL 137
            V D M T +E+  V    T+ +AL  +  K   +T   + DDD  ++G+ +D DL
Sbjct: 29  RVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTA--ICDDDMNIIGIFTDGDL 82

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           ++ D MT       ++P T   +AL ++  + IT   V D D  L+G+V  +DLL
Sbjct: 96  SIADVMTRGG--IRIRPGTLAVDALNLMQSRHITCVLVADGD-HLLGVVHMHDLL 147

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 2/48 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV 132
           V + MT  +E+  V  +  V+EAL+I++E RI   PV+D+  KLVGL+
Sbjct: 152 VKELMT--KEVITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLI 197

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 Length = 486

 Score = 44.4 bits (106), Expect = 5e-06
 Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 98  VKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           + P  TVD AL ++ +  I G PV++D+ K+VG+++  D+
Sbjct: 106 IAPDETVDFALFLMEKHGIDGLPVVEDE-KVVGIITKKDI 144

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632

 Score = 47.8 bits (114), Expect = 4e-07
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 78  PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVE-KRITGFPVIDDDWKLVGLVSDYD 136
             S   T  + M   E    + P +       IL +      FPVID +  L+G +S  +
Sbjct: 448 DRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKE 507

Query: 137 LL 138
           ++
Sbjct: 508 IV 509

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 92  KEELHVVKPTTTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLAL---DSISGSG 147
                ++K   TV EA+ ++ + R+   PV+D DD  ++G+V    L+      +   S 
Sbjct: 392 PAPPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSD 451

Query: 148 RADNSM---FPEVDST 160
            A  ++      ++ +
Sbjct: 452 PAIKALNKRVIRLNES 467

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250

 Score = 38.9 bits (89), Expect = 3e-04
 Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 79  SSGVY--TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK--LVGLVSD 134
           S+  Y   VGD M    ++  +  T+T  + L +L + ++  FP +D      L+G +  
Sbjct: 7   SANKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDR 64

Query: 135 YDLLALDSISGSGRADNSMFPEVDS 159
            ++  L     S             
Sbjct: 65  TEVEGLLQRRISAYRRQPAAAAEAD 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.11
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.09
4esy_A	170	CBS domain containing membrane protein; structural	99.08
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.08
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.06
4esy_A	170	CBS domain containing membrane protein; structural	99.06
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.05
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.03
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.02
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.02
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.02
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.0
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.98
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.97
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.96
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.95
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.94
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.94
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.94
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.93
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.93
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.93
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.93
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.93
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.92
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.91
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.9
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.9
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.89
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.89
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.88
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.88
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.88
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.87
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.87
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.86
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.86
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.86
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.86
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.86
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.86
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.85
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.85
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.85
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.85
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.84
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.83
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.83
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.82
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.82
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.82
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.82
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.81
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.81
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.8
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.8
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.8
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.8
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.79
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.79
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.78
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.78
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.77
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.77
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.75
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.75
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.75
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.74
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.74
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.73
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.72
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.72
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.71
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.69
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.69
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.65
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.65
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.65
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.64
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.64
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.63
3ddj_A	296	CBS domain-containing protein; structural genomics	98.63
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.63
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.62
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.61
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.6
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.59
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.56
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.56
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.55
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.55
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.54
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.54
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.53
3ddj_A	296	CBS domain-containing protein; structural genomics	98.53
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.51
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.49
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.48
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.46
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.46
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.46
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.46
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.43
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.42
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.42
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.42
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.41
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.35
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.34
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.31
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.31
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.3
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.23
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.21
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.21
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.18
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.09
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.07
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.02
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.02
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.99
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.95
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.89
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.89
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.59

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.11  E-value=2e-11  Score=92.22  Aligned_cols=86  Identities=21%  Similarity=0.205  Sum_probs=65.7

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc-------CCCCCCCCCCc
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS-------GSGRADNSMFP  155 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~-------~~~~~~~~m~~  155 (172)
                      .+++++|++++++.++.+++++.+|+++|.+++++++||+|++|+++|+||.+|+++.....       ....+...|..
T Consensus        15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~   94 (156)
T 3k6e_A           15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT   94 (156)
T ss_dssp             TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC
T ss_pred             ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC
Confidence            36789999988999999999999999999999999999999889999999999998643221       13444555544


Q ss_pred             Cc------cchhhhhhhhc
Q 030753          156 EV------DSTWKVYIQRG  168 (172)
Q Consensus       156 ~~------~~l~~~l~~i~  168 (172)
                      .+      .++.+.++.++
T Consensus        95 ~~~~v~~~~~l~~~~~~m~  113 (156)
T 3k6e_A           95 DVAVVSPDFTITEVLHKLV  113 (156)
T ss_dssp             SCCCBCTTCCHHHHHHHTT
T ss_pred             CceecccccHHHHHHHHHH
Confidence            32      44555555544

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.09  E-value=6.2e-11  Score=85.78  Aligned_cols=87  Identities=21%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccCCCCCCCCCCc----
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP----  155 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~----  155 (172)
                      ...+|+++|+++.++.++.+++++.+++++|.+++++++||+|++ |+++|+||.+|+++.... ......+.|.+    
T Consensus         3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-~~~~v~~~m~~~~~v   81 (129)
T 3jtf_A            3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE-PALDIRSLVRPAVFI   81 (129)
T ss_dssp             -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC-TTSCGGGGCBCCCEE
T ss_pred             CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc-CCcCHHHHhCCCeEe
Confidence            466899999965488999999999999999999999999999975 899999999999875432 23334444433    


Q ss_pred             -Cccchhhhhhhhc
Q 030753          156 -EVDSTWKVYIQRG  168 (172)
Q Consensus       156 -~~~~l~~~l~~i~  168 (172)
                       .-.++.+.++.++
T Consensus        82 ~~~~~l~~~~~~m~   95 (129)
T 3jtf_A           82 PEVKRLNVLLREFR   95 (129)
T ss_dssp             ETTCBHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHH
Confidence             2345555555544

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.08  E-value=4.8e-11  Score=90.37  Aligned_cols=59  Identities=25%  Similarity=0.455  Sum_probs=55.1

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ..++|+|+|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus        16 ~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A           16 RQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGS   74 (170)
T ss_dssp             HTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGT
T ss_pred             cCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHH
Confidence            45799999999  999999999999999999999999999999899999999999998643

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.08  E-value=6.2e-11  Score=86.63  Aligned_cols=87  Identities=22%  Similarity=0.269  Sum_probs=65.9

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeec--ccCCCCCCCCCCc---
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS--ISGSGRADNSMFP---  155 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~--~~~~~~~~~~m~~---  155 (172)
                      +.+|+++|+++.++.++.+++++.+++++|.+++++.+||+|++ |+++|+||.+|+++...  ..........|.+   
T Consensus         2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~~~~   81 (136)
T 3lfr_A            2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRPATF   81 (136)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBCCCE
T ss_pred             CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCCCeE
Confidence            45899999965588999999999999999999999999999977 79999999999997643  2224445555544   


Q ss_pred             --Cccchhhhhhhhc
Q 030753          156 --EVDSTWKVYIQRG  168 (172)
Q Consensus       156 --~~~~l~~~l~~i~  168 (172)
                        .-.++.+.++.++
T Consensus        82 v~~~~~l~~~~~~m~   96 (136)
T 3lfr_A           82 VPESKRLNVLLREFR   96 (136)
T ss_dssp             EETTCBHHHHHHHHH
T ss_pred             ECCCCcHHHHHHHHH
Confidence              2244555554443

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.06  E-value=5.7e-11  Score=79.10  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=52.9

Q ss_pred             eeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC----CCCCCCCCCcCccc
Q 030753           95 LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEVDS  159 (172)
Q Consensus        95 ~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~----~~~~~~~m~~~~~~  159 (172)
                      ++++.|++++.+|+++|.+++++++||+| +|+++||+|.+|+.+.....+    ..+++++|++++.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iT   69 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVK   69 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeE
Confidence            67899999999999999999999999998 589999999999985443322    45677788776543

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.06  E-value=3.8e-11  Score=90.95  Aligned_cols=89  Identities=20%  Similarity=0.227  Sum_probs=73.1

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC-----------------------CCCeeEecceeeccceeeeecccccHHHH
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP-----------------------SSGVYTVGDFMTTKEELHVVKPTTTVDEA  107 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~-----------------------~~~~~~V~diM~~~~~~~~v~~~~sl~ea  107 (172)
                      +++|+++..+...|.++...+.......                       .....+++++|++  +++++.+++++.++
T Consensus        50 ~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~tv~~~~~l~~a  127 (170)
T 4esy_A           50 GCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPEVEHLFETGRKLTASAVMTQ--PVVTAAPEDSVGSI  127 (170)
T ss_dssp             SEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHHHHHHHHHHTTCBHHHHCBC--CSCCBCTTSBHHHH
T ss_pred             eEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhhHHhhhccccccchhhhccc--CcccCCcchhHHHH
Confidence            5678888888888888777765443211                       1134689999999  99999999999999


Q ss_pred             HHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753          108 LEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       108 l~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      +++|.++++.++||+| +|+++||||..||+++..
T Consensus       128 ~~~m~~~~~~~lpVvd-~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A          128 ADQMRRHGIHRIPVVQ-DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             HHHHHHTTCSEEEEEE-TTEEEEEEEHHHHTTTSC
T ss_pred             HHHHHHcCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            9999999999999998 689999999999997654

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.05  E-value=3.7e-11  Score=88.64  Aligned_cols=89  Identities=16%  Similarity=0.180  Sum_probs=69.0

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccCCCCCCCCCCc--
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP--  155 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~--  155 (172)
                      .+...+|+++|+++.++.++.+++++.+++++|.+++++.+||+|++ |+++|+||.+|+++...........+.|.+  
T Consensus        19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m~~~~   98 (148)
T 3lv9_A           19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINENKIELEEILRDII   98 (148)
T ss_dssp             GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHSCCCGGGTCBCCE
T ss_pred             ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCCCccHHHhcCCCe
Confidence            34678999999987789999999999999999999999999999977 899999999999876433324455555622  


Q ss_pred             ---Cccchhhhhhhh
Q 030753          156 ---EVDSTWKVYIQR  167 (172)
Q Consensus       156 ---~~~~l~~~l~~i  167 (172)
                         .-.++.+.++.+
T Consensus        99 ~v~~~~~l~~~~~~m  113 (148)
T 3lv9_A           99 YISENLTIDKALERI  113 (148)
T ss_dssp             EEETTSBHHHHHHHH
T ss_pred             EECCCCCHHHHHHHH
Confidence               224455555444

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.03  E-value=6.1e-11  Score=90.23  Aligned_cols=75  Identities=16%  Similarity=0.261  Sum_probs=60.4

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccCCCCCCCCC
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSM  153 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~~~~~~~~m  153 (172)
                      .+...+|+++|+++.+++++.+++++.+++++|.+++++.+||+|++ ++++|+||.+|+++............+|
T Consensus        38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im  113 (172)
T 3lhh_A           38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGERLELVDLV  113 (172)
T ss_dssp             -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTCCCCGGGGC
T ss_pred             ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcCcccHHHHh
Confidence            45778999999954489999999999999999999999999999977 8999999999999765444345566666

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.02  E-value=4.5e-11  Score=86.15  Aligned_cols=88  Identities=14%  Similarity=0.181  Sum_probs=71.3

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      +++++++. +...|.++...+............+++++|.+  ++.++.+++++.+++++|.++++..+||+|++|+++|
T Consensus        37 ~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~G  113 (128)
T 3gby_A           37 ACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLE--TVRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEG  113 (128)
T ss_dssp             SEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCB--CCCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEE
T ss_pred             cEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccC--CCcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEE
Confidence            46677776 66677776666654433222233689999998  9999999999999999999999999999998899999


Q ss_pred             Eeeccceeeee
Q 030753          131 LVSDYDLLALD  141 (172)
Q Consensus       131 IVt~~Dll~~~  141 (172)
                      +||..|+++..
T Consensus       114 iit~~dll~~l  124 (128)
T 3gby_A          114 VVSRKRILGFL  124 (128)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEEHHHHHHHH
Confidence            99999998643

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.02  E-value=8.6e-11  Score=84.65  Aligned_cols=60  Identities=30%  Similarity=0.516  Sum_probs=53.6

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD  141 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~  141 (172)
                      +.+|+++|++..++.++.+++++.+++++|.+++++.+||+|++ |+++|+||.+|+++..
T Consensus         2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~   62 (127)
T 3nqr_A            2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFM   62 (127)
T ss_dssp             -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGG
T ss_pred             CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHH
Confidence            45899999973359999999999999999999999999999987 8999999999999654

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.02  E-value=8.8e-11  Score=87.84  Aligned_cols=89  Identities=20%  Similarity=0.259  Sum_probs=67.4

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeecccCCCCCCCCCCc---
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDSISGSGRADNSMFP---  155 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~---  155 (172)
                      +...+|+++|+++.+++++.+++++.+++++|.+++++.+||+|++ ++++|+||.+|+++............+|.+   
T Consensus        35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~~~~v~~im~~~~~  114 (156)
T 3oi8_A           35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNPEQFHLKSILRPAVF  114 (156)
T ss_dssp             HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCGGGCCHHHHCBCCCE
T ss_pred             cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcCCcccHHHHcCCCEE
Confidence            3677999999986678999999999999999999999999999977 499999999999976433222333333332   


Q ss_pred             --Cccchhhhhhhhc
Q 030753          156 --EVDSTWKVYIQRG  168 (172)
Q Consensus       156 --~~~~l~~~l~~i~  168 (172)
                        .-.++.+.++.++
T Consensus       115 v~~~~~l~~a~~~m~  129 (156)
T 3oi8_A          115 VPEGKSLTALLKEFR  129 (156)
T ss_dssp             EETTSBHHHHHHHHH
T ss_pred             ECCCCCHHHHHHHHH
Confidence              3355555555543

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.00  E-value=1.2e-10  Score=85.04  Aligned_cols=89  Identities=15%  Similarity=0.067  Sum_probs=70.9

Q ss_pred             cccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++|+++.. +...|.+....+............+++++|.+   +.++.+++++.+++++|.++++..+||+|++|+++
T Consensus        37 ~~~pVvd~~~~~~vGivt~~dl~~~~~~~~~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lv  113 (136)
T 3lfr_A           37 SRYPVIGESHDDVLGVLLAKDLLPLILKADGDSDDVKKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVA  113 (136)
T ss_dssp             SEEEEESSSTTCEEEEEEGGGGGGGGGSSSGGGCCGGGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEE
T ss_pred             CEEEEEcCCCCcEEEEEEHHHHHHHHHhccCCCcCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence            466777765 56677777766665433233456789999954   78999999999999999999999999999889999


Q ss_pred             EEeeccceeeeec
Q 030753          130 GLVSDYDLLALDS  142 (172)
Q Consensus       130 GIVt~~Dll~~~~  142 (172)
                      |+||..|+++...
T Consensus       114 Giit~~Dil~~l~  126 (136)
T 3lfr_A          114 GLVTIEDVLEQIV  126 (136)
T ss_dssp             EEEEHHHHHTTC-
T ss_pred             EEEEHHHHHHHHh
Confidence            9999999987543

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.98  E-value=4.9e-11  Score=86.28  Aligned_cols=63  Identities=19%  Similarity=0.276  Sum_probs=53.5

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeeec
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALDS  142 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~~  142 (172)
                      +...+|+++|++..+++++.+++++.+++++|.+++++.+||+|++ |+++|+||.+|+++...
T Consensus         3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~   66 (130)
T 3i8n_A            3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQ   66 (130)
T ss_dssp             ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHH
T ss_pred             cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHh
Confidence            4678999999975467789999999999999999999999999977 89999999999987543

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.97  E-value=2.9e-10  Score=81.81  Aligned_cols=72  Identities=17%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCC--CCCCCCCCc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGS--GRADNSMFP  155 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~--~~~~~~m~~  155 (172)
                      .+.+++++|++  ++.++.+++++.+++++|.+++++.+||+|+ |+++|+|+.+|+.+.......  ....+.|.+
T Consensus         3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~   76 (128)
T 3gby_A            3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPTVKEKLGEELLE   76 (128)
T ss_dssp             TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCCTTCBCCGGGCB
T ss_pred             cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCcccCcHHHHccC
Confidence            46799999999  9999999999999999999999999999997 999999999999865443221  344555543

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.96  E-value=2e-10  Score=82.66  Aligned_cols=86  Identities=21%  Similarity=0.217  Sum_probs=69.3

Q ss_pred             cccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++|+++.. +...|.+....+..... ......+++++|.+   +.++.+++++.+++++|.++++..+||+|++|+++
T Consensus        37 ~~~pVvd~~~~~~vGivt~~dl~~~~~-~~~~~~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~  112 (127)
T 3nqr_A           37 SRFPVISEDKDHIEGILMAKDLLPFMR-SDAEAFSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVS  112 (127)
T ss_dssp             SEEEEESSSTTCEEEEEEGGGGGGGGS-TTCCCCCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEE
T ss_pred             CEEEEEcCCCCcEEEEEEHHHHHHHHh-ccCCCCCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence            466777765 56677776666654432 23356789999944   67899999999999999999999999999889999


Q ss_pred             EEeeccceeee
Q 030753          130 GLVSDYDLLAL  140 (172)
Q Consensus       130 GIVt~~Dll~~  140 (172)
                      |+||..|+++.
T Consensus       113 Giit~~dll~~  123 (127)
T 3nqr_A          113 GLVTIEDILEL  123 (127)
T ss_dssp             EEEEHHHHHHH
T ss_pred             EEEEHHHHHHH
Confidence            99999999864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.95  E-value=1.4e-10  Score=84.66  Aligned_cols=88  Identities=18%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             cccchhhhhc--cCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALR--RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++++++..+  ...|.++...+............+++++|.+  ++.++.++ ++.+++++|.++++..+||+|++|++
T Consensus        37 ~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~--~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~~g~~  113 (141)
T 2rih_A           37 GLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANS--PITVLDTD-PVHVAAEKMRRHNIRHVVVVNKNGEL  113 (141)
T ss_dssp             SEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBC--CCEEETTS-BHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             CEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCC--CCeEEcCC-CHHHHHHHHHHcCCeEEEEEcCCCcE
Confidence            3566776655  5666666655543322222245789999998  99999999 99999999999999999999988999


Q ss_pred             EEEeeccceeeee
Q 030753          129 VGLVSDYDLLALD  141 (172)
Q Consensus       129 vGIVt~~Dll~~~  141 (172)
                      +|+||..|+++..
T Consensus       114 ~Giit~~dll~~~  126 (141)
T 2rih_A          114 VGVLSIRDLCFER  126 (141)
T ss_dssp             EEEEEHHHHHSCH
T ss_pred             EEEEEHHHHHHHH
Confidence            9999999998643

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.94  E-value=1.9e-10  Score=88.22  Aligned_cols=62  Identities=19%  Similarity=0.178  Sum_probs=56.2

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLALD  141 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~~  141 (172)
                      +...+|+++|+++.+++++.+++++.+++++|.+++++.+||+|++ |+++|+|+.+|++...
T Consensus        33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~   95 (173)
T 3ocm_A           33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADL   95 (173)
T ss_dssp             HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHH
T ss_pred             cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHH
Confidence            4677999999975579999999999999999999999999999876 8999999999998654

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.94  E-value=3e-10  Score=83.57  Aligned_cols=62  Identities=29%  Similarity=0.352  Sum_probs=55.9

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +...+|+++|++.+++.++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+++..
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   73 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGI   73 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHT
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHH
Confidence            36689999999644799999999999999999999999999999889999999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.93  E-value=1.4e-10  Score=84.79  Aligned_cols=90  Identities=26%  Similarity=0.338  Sum_probs=69.9

Q ss_pred             cccchhhhhccCceeeecCceeccCC--------------CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhh
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA--------------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRI  116 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--------------~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i  116 (172)
                      +++++++..+...|.++...+.....              .......+++++|.+  ++.++.+++++.+++++|.++++
T Consensus        39 ~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~  116 (152)
T 4gqw_A           39 TGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTNGKLVGDLMTP--APLVVEEKTNLEDAAKILLETKY  116 (152)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----CCBHHHHSEE--SCCCEESSSBHHHHHHHHHHSSC
T ss_pred             ceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhccccHHHhcCC--CceEECCCCcHHHHHHHHHHCCC
Confidence            45677776666677776666643211              112345789999999  89999999999999999999999


Q ss_pred             cCcceecCCccEEEEeeccceeeeec
Q 030753          117 TGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       117 ~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      +.+||+|++|+++|+||.+|+++...
T Consensus       117 ~~l~Vvd~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A          117 RRLPVVDSDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             CEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             CEEEEECCCCcEEEEEEHHHHHHHHH
Confidence            99999998899999999999997543

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.93  E-value=3e-10  Score=80.50  Aligned_cols=81  Identities=21%  Similarity=0.343  Sum_probs=62.9

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCcC------c
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE------V  157 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~------~  157 (172)
                      +|+++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+.+..... .......|.+.      -
T Consensus         2 ~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~-~~~v~~~~~~~~~~v~~~   78 (122)
T 3kpb_A            2 LVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN-KKTIEEIMTRNVITAHED   78 (122)
T ss_dssp             BHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT-CCBGGGTSBSSCCCEETT
T ss_pred             chHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc-ccCHHHHhcCCCeEECCC
Confidence            68899999  999999999999999999999999999999889999999999998654332 22344444332      2


Q ss_pred             cchhhhhhhh
Q 030753          158 DSTWKVYIQR  167 (172)
Q Consensus       158 ~~l~~~l~~i  167 (172)
                      .++.+.++.+
T Consensus        79 ~~l~~~~~~~   88 (122)
T 3kpb_A           79 EPVDHVAIKM   88 (122)
T ss_dssp             SBHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            4455555444

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.93  E-value=5.9e-10  Score=80.75  Aligned_cols=74  Identities=26%  Similarity=0.318  Sum_probs=60.4

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee-eecc--cCCCCCCCCCCc
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA-LDSI--SGSGRADNSMFP  155 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~-~~~~--~~~~~~~~~m~~  155 (172)
                      +...+|+++|++  ++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++ ....  .........|.+
T Consensus         4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   80 (138)
T 2yzi_A            4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR   80 (138)
T ss_dssp             CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC
T ss_pred             hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhC
Confidence            356799999998  9999999999999999999999999999998899999999999973 2221  123455556644

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.93  E-value=1.5e-10  Score=83.51  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=67.9

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      ++++++ .+...|.++...+............+++++|.+  ++.++.+++++.++++.|.++++..+||+|++|+++|+
T Consensus        37 ~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Gi  113 (133)
T 2ef7_A           37 SVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGI  113 (133)
T ss_dssp             EEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEE
T ss_pred             EEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEE
Confidence            456666 555566665555543222222345789999998  89999999999999999999999999999988999999


Q ss_pred             eeccceeeee
Q 030753          132 VSDYDLLALD  141 (172)
Q Consensus       132 Vt~~Dll~~~  141 (172)
                      ||..|+++..
T Consensus       114 it~~dll~~~  123 (133)
T 2ef7_A          114 ISIRDITRAI  123 (133)
T ss_dssp             EEHHHHHHHH
T ss_pred             EEHHHHHHHH
Confidence            9999998643

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.93  E-value=1.4e-10  Score=82.31  Aligned_cols=86  Identities=22%  Similarity=0.287  Sum_probs=69.1

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      +++++++..+...|.+....+......   ...+++++|.+  ++.++.+++++.+++++|.+++++.+||+|++|+++|
T Consensus        33 ~~~~Vvd~~~~~~G~vt~~dl~~~~~~---~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~G  107 (122)
T 3kpb_A           33 NHLPIVDEHGKLVGIITSWDIAKALAQ---NKKTIEEIMTR--NVITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVG  107 (122)
T ss_dssp             SCEEEECTTSBEEEEECHHHHHHHHHT---TCCBGGGTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEE
T ss_pred             CeEEEECCCCCEEEEEEHHHHHHHHHh---cccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEE
Confidence            456777766666677655555433222   23389999998  8999999999999999999999999999998899999


Q ss_pred             Eeeccceeeee
Q 030753          131 LVSDYDLLALD  141 (172)
Q Consensus       131 IVt~~Dll~~~  141 (172)
                      +||..|+++..
T Consensus       108 ivt~~dl~~~l  118 (122)
T 3kpb_A          108 IVTSEDISRLF  118 (122)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEeHHHHHHHh
Confidence            99999998643

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.92  E-value=2.7e-10  Score=82.70  Aligned_cols=60  Identities=12%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC-CccEEEEeeccceeeeec
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~-~~~lvGIVt~~Dll~~~~  142 (172)
                      ++|+++|+++.+++++.+++++.+++++|.+++++.+||+++ +|+++|+||.+|+++...
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~   62 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT   62 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHT
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHh
Confidence            578999987557899999999999999999999999999975 489999999999986544

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.91  E-value=6.9e-10  Score=82.10  Aligned_cols=62  Identities=27%  Similarity=0.403  Sum_probs=54.8

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +...+|+++|++++++.++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+.+..
T Consensus         8 l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~   69 (157)
T 2emq_A            8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAI   69 (157)
T ss_dssp             --CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHS
T ss_pred             HhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHH
Confidence            46789999999655788999999999999999999999999999889999999999998654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.90  E-value=2.2e-10  Score=85.12  Aligned_cols=73  Identities=26%  Similarity=0.471  Sum_probs=61.2

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCccee-cCC-ccEEEEeeccceeeeecccCCCCCCCCC
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI-DDD-WKLVGLVSDYDLLALDSISGSGRADNSM  153 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVv-d~~-~~lvGIVt~~Dll~~~~~~~~~~~~~~m  153 (172)
                      ...+|+++|+++.++.++.+++++.+++++|.+++++.+||+ |++ |+++|+||.+|+++.............|
T Consensus        18 ~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~~~~v~~~m   92 (153)
T 3oco_A           18 NDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDDKAKISTIM   92 (153)
T ss_dssp             HHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHTTSBGGGTC
T ss_pred             CCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCCCCcHHHHh
Confidence            567999999976689999999999999999999999999999 654 8999999999998764433345556666

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.90  E-value=3e-10  Score=85.55  Aligned_cols=59  Identities=75%  Similarity=1.256  Sum_probs=54.3

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .++|+++|+++.+++++.+++++.+++++|.+++++.+||+|++|+++|+|+.+||++.
T Consensus         3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~   61 (180)
T 3sl7_A            3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLAL   61 (180)
T ss_dssp             CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC
T ss_pred             ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhh
Confidence            46899999986678999999999999999999999999999988999999999999854

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.89  E-value=2.6e-10  Score=85.25  Aligned_cols=92  Identities=21%  Similarity=0.191  Sum_probs=74.8

Q ss_pred             cccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCc---
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW---  126 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~---  126 (172)
                      +++++++..+...|.++...+...... ......+++++|.+..++.++.+++++.+++++|.++++..+||+|++|   
T Consensus        48 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~  127 (159)
T 3fv6_A           48 GTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGF  127 (159)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSE
T ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcce
Confidence            467788877777788777776654332 2346679999998755688999999999999999999999999999777   


Q ss_pred             cEEEEeeccceeeeec
Q 030753          127 KLVGLVSDYDLLALDS  142 (172)
Q Consensus       127 ~lvGIVt~~Dll~~~~  142 (172)
                      +++|+||..||++...
T Consensus       128 ~~vGiit~~dil~~l~  143 (159)
T 3fv6_A          128 EVIGRVTKTNMTKILV  143 (159)
T ss_dssp             EEEEEEEHHHHHHHHH
T ss_pred             eEEEEEEHHHHHHHHH
Confidence            9999999999986543

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.89  E-value=2.2e-10  Score=82.96  Aligned_cols=88  Identities=22%  Similarity=0.314  Sum_probs=70.6

Q ss_pred             cccchhhhhccCceeeecCce-eccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhh-----hcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTL-TANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~-----i~~lPVvd~  124 (172)
                      +.+++++..+...|.++...+ ............+++++|.+  ++.++.+++++.++++.|.+++     ++.+||+|+
T Consensus        40 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~  117 (138)
T 2p9m_A           40 SSLPVIDDENKVIGIVTTTDIGYNLIRDKYTLETTIGDVMTK--DVITIHEDASILEAIKKMDISGKKEEIINQLPVVDK  117 (138)
T ss_dssp             CEEEEECTTCBEEEEEEHHHHHHHHTTTCCCSSCBHHHHSCS--SCCCEETTSBHHHHHHHHTCC-----CCCEEEEECT
T ss_pred             cEEEEECCCCeEEEEEEHHHHHHHHHhhcccCCcCHHHHhCC--CcEEECCCCCHHHHHHHHHhcCCccccccEEEEECC
Confidence            356677766667777777666 43322334456789999998  8999999999999999999999     999999998


Q ss_pred             CccEEEEeeccceeee
Q 030753          125 DWKLVGLVSDYDLLAL  140 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~  140 (172)
                      +|+++|+||..|+++.
T Consensus       118 ~g~~~Giit~~dll~~  133 (138)
T 2p9m_A          118 NNKLVGIISDGDIIRT  133 (138)
T ss_dssp             TSBEEEEEEHHHHHHH
T ss_pred             CCeEEEEEEHHHHHHH
Confidence            8999999999998864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.88  E-value=3e-10  Score=85.58  Aligned_cols=90  Identities=24%  Similarity=0.330  Sum_probs=70.8

Q ss_pred             cccchhhhhccCceeeecCceeccCCC----------------------------CCCCeeEecceeeccceeeeecccc
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA----------------------------PSSGVYTVGDFMTTKEELHVVKPTT  102 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~----------------------------~~~~~~~V~diM~~~~~~~~v~~~~  102 (172)
                      +++|+++..+...|.++...+......                            ......+++++|++  ++.++.+++
T Consensus        38 ~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~  115 (180)
T 3sl7_A           38 TGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTP--SPLVVRDST  115 (180)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHTCC-------------------CCCSHHHHHHHHHTTTTCBHHHHSEE--SCCCEETTS
T ss_pred             CeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhhhhHHHHHHHhccccccHHHHhCC--CceEeCCCC
Confidence            456677766666677766665532110                            02345689999998  899999999


Q ss_pred             cHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753          103 TVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       103 sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ++.+++++|.++++..+||+|++|+++|+||.+|+++...
T Consensus       116 ~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A          116 NLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             BHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHH
Confidence            9999999999999999999998899999999999986543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.88  E-value=4.5e-10  Score=83.70  Aligned_cols=63  Identities=25%  Similarity=0.395  Sum_probs=56.2

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .+...+|+++|++++++.++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+....
T Consensus        10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~   72 (159)
T 1yav_A           10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSI   72 (159)
T ss_dssp             -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHh
Confidence            345679999998766789999999999999999999999999999889999999999998654

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.88  E-value=4.7e-10  Score=88.46  Aligned_cols=85  Identities=19%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      +.+++++..+...|.++...+..     .....+++++|++  ++.++.+++++.+++++|.+++++.+||+|++|+++|
T Consensus        45 ~~~pVvd~~~~l~Givt~~dl~~-----~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvG  117 (213)
T 1vr9_A           45 NECIVKDREGHFRGVVNKEDLLD-----LDLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKG  117 (213)
T ss_dssp             SEEEEECTTSBEEEEEEGGGGTT-----SCTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEE
T ss_pred             CEEEEEcCCCEEEEEEEHHHHHh-----hcCCCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEE
Confidence            45566765555555554444432     2235689999999  8999999999999999999999999999997799999


Q ss_pred             Eeeccceeeeec
Q 030753          131 LVSDYDLLALDS  142 (172)
Q Consensus       131 IVt~~Dll~~~~  142 (172)
                      +||.+|+++...
T Consensus       118 iit~~Dil~~~~  129 (213)
T 1vr9_A          118 AVSLHDFLEALI  129 (213)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999986543

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.87  E-value=3.5e-10  Score=85.98  Aligned_cols=88  Identities=17%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             ecccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           50 ATSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        50 ~r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      ++++|+++.. +...|.+....+.......  ...+++++| +  ++.++.+++++.+++++|.++++..+||+|++|++
T Consensus        75 ~~~~pVvd~~~~~lvGivt~~dl~~~~~~~--~~~~v~~im-~--~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~g~l  149 (172)
T 3lhh_A           75 HSRFPVCRNNVDDMVGIISAKQLLSESIAG--ERLELVDLV-K--NCNFVPNSLSGMELLEHFRTTGSQMVFVVDEYGDL  149 (172)
T ss_dssp             CSEEEEESSSTTSEEEEEEHHHHHHHHHTT--CCCCGGGGC-B--CCEEEETTCCHHHHHHHHHHHTCSEEEEECTTSCE
T ss_pred             CCEEEEEeCCCCeEEEEEEHHHHHHHHhhc--CcccHHHHh-c--CCeEeCCCCCHHHHHHHHHHcCCeEEEEEeCCCCE
Confidence            4567777765 6666777666655443322  367899999 7  89999999999999999999999999999988999


Q ss_pred             EEEeeccceeeeec
Q 030753          129 VGLVSDYDLLALDS  142 (172)
Q Consensus       129 vGIVt~~Dll~~~~  142 (172)
                      +|+||..|+++...
T Consensus       150 vGiit~~Dil~~l~  163 (172)
T 3lhh_A          150 KGLVTLQDMMDALT  163 (172)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEeeHHHHHHHHh
Confidence            99999999997544

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.87  E-value=3.7e-10  Score=83.39  Aligned_cols=86  Identities=24%  Similarity=0.275  Sum_probs=70.3

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++++++..+...|.++...+...-... .....+++++|.+  ++.++.+++++.+++++|.++++..+||+|++ +++
T Consensus        62 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-~~~  138 (149)
T 3k2v_A           62 GMTAICDDDMNIIGIFTDGDLRRVFDTGVDMRDASIADVMTR--GGIRIRPGTLAVDALNLMQSRHITCVLVADGD-HLL  138 (149)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHHCSSSCCTTCBHHHHSEE--SCCEECTTCBHHHHHHHHHHHTCSEEEEEETT-EEE
T ss_pred             cEEEEECCCCcEEEEecHHHHHHHHhcCCCcccCcHHHHcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEecCC-EEE
Confidence            4667787777777777766665433222 2356799999999  89999999999999999999999999999965 999


Q ss_pred             EEeeccceee
Q 030753          130 GLVSDYDLLA  139 (172)
Q Consensus       130 GIVt~~Dll~  139 (172)
                      |+||..|+++
T Consensus       139 Giit~~dil~  148 (149)
T 3k2v_A          139 GVVHMHDLLR  148 (149)
T ss_dssp             EEEEHHHHTC
T ss_pred             EEEEHHHhhc
Confidence            9999999875

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.86  E-value=2.2e-10  Score=82.81  Aligned_cols=87  Identities=18%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             ecccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           50 ATSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        50 ~r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      ++++|+++.. +...|.+....+..... ......+++++| .  ++.++.+++++.+++++|.++++..+||+|++|++
T Consensus        39 ~~~~pVvd~~~~~~~Givt~~dl~~~~~-~~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~  114 (130)
T 3i8n_A           39 FSRPLVYSEQKDNIIGFVHRLELFKMQQ-SGSGQKQLGAVM-R--PIQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTV  114 (130)
T ss_dssp             CSCCEEESSSTTCEEEECCHHHHHHHHH-TTTTTSBHHHHS-E--ECCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCE
T ss_pred             CCEEEEEeCCCCcEEEEEEHHHHHHHHh-cCCCcCCHHHHh-c--CCcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCE
Confidence            3567777765 56667666655544322 122467899999 4  57899999999999999999999999999988999


Q ss_pred             EEEeeccceeee
Q 030753          129 VGLVSDYDLLAL  140 (172)
Q Consensus       129 vGIVt~~Dll~~  140 (172)
                      +|+||..|+++.
T Consensus       115 vGivt~~dil~~  126 (130)
T 3i8n_A          115 LGLVTLEDIFEH  126 (130)
T ss_dssp             EEEEEHHHHHHH
T ss_pred             EEEEEHHHHHHH
Confidence            999999999864

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.86  E-value=2e-10  Score=84.65  Aligned_cols=87  Identities=15%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             ecccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           50 ATSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        50 ~r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      ++++|+++.. +...|.+....+.......  ...+++++| +  ++.++.+++++.+++++|.++++..+||+|++|++
T Consensus        56 ~~~~pVvd~~~~~lvGivt~~dl~~~~~~~--~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~  130 (148)
T 3lv9_A           56 VTRYPVCRKNKDDILGFVHIRDLYNQKINE--NKIELEEIL-R--DIIYISENLTIDKALERIRKEKLQLAIVVDEYGGT  130 (148)
T ss_dssp             CSEEEEESSSTTSEEEEEEHHHHHHHHHHH--SCCCGGGTC-B--CCEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSE
T ss_pred             CCEEEEEcCCCCcEEEEEEHHHHHHHHhcC--CCccHHHhc-C--CCeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCE
Confidence            3456777765 5666666665554432211  166899999 7  78999999999999999999999999999988999


Q ss_pred             EEEeeccceeeee
Q 030753          129 VGLVSDYDLLALD  141 (172)
Q Consensus       129 vGIVt~~Dll~~~  141 (172)
                      +|+||..|+++..
T Consensus       131 ~Giit~~dil~~l  143 (148)
T 3lv9_A          131 SGVVTIEDILEEI  143 (148)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEEEHHHHHHHH
Confidence            9999999998643

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.86  E-value=8.1e-10  Score=79.89  Aligned_cols=59  Identities=34%  Similarity=0.503  Sum_probs=54.2

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccce-eee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL-LAL  140 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dl-l~~  140 (172)
                      +...+++++|++  ++.++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+ .+.
T Consensus         5 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   64 (138)
T 2p9m_A            5 LKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNL   64 (138)
T ss_dssp             CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHH
Confidence            356799999998  89999999999999999999999999999988999999999999 653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.86  E-value=5.1e-10  Score=82.67  Aligned_cols=59  Identities=29%  Similarity=0.389  Sum_probs=54.4

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .+|+++|++++++.++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+.+..
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   86 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVF   86 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHH
Confidence            58999998866789999999999999999999999999999889999999999998654

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.86  E-value=6e-10  Score=81.41  Aligned_cols=60  Identities=90%  Similarity=1.399  Sum_probs=54.7

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ..++|+++|++..++.++.+++++.++++.|.+++++.+||+|++|+++|+|+.+|+++.
T Consensus         3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~   62 (152)
T 4gqw_A            3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLAL   62 (152)
T ss_dssp             CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTC
T ss_pred             ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHh
Confidence            457899999986568999999999999999999999999999988999999999999754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.86  E-value=7.2e-10  Score=83.30  Aligned_cols=90  Identities=21%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CCCCeeEecceeecc-ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc----cCCCCCCCC
Q 030753           78 PSSGVYTVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SGSGRADNS  152 (172)
Q Consensus        78 ~~~~~~~V~diM~~~-~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~----~~~~~~~~~  152 (172)
                      ..+..++|+++|+++ +++.++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+.+....    .....+.+.
T Consensus        19 ~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~   98 (165)
T 3fhm_A           19 FQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVA   98 (165)
T ss_dssp             CSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGT
T ss_pred             HhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHH
Confidence            445778999999962 368999999999999999999999999999988999999999999865332    123445555


Q ss_pred             CCcCc------cchhhhhhhh
Q 030753          153 MFPEV------DSTWKVYIQR  167 (172)
Q Consensus       153 m~~~~------~~l~~~l~~i  167 (172)
                      |.+.+      .++.+.++.+
T Consensus        99 m~~~~~~v~~~~~l~~a~~~m  119 (165)
T 3fhm_A           99 MTKNVVRCQHNSTTDQLMEIM  119 (165)
T ss_dssp             SBSSCCCBCTTCBHHHHHHHH
T ss_pred             hcCCCeEECCCCcHHHHHHHH
Confidence            54432      4455555444

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.85  E-value=2.7e-10  Score=82.68  Aligned_cols=88  Identities=14%  Similarity=-0.007  Sum_probs=69.3

Q ss_pred             cccchhhh-hccCceeeecCceeccCCCC-CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSA-LRRSSAVFASGTLTANSAAP-SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~-~~~~~~~~~~g~~~~~~~~~-~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++|+++. .+...|.+....+....... .....+++++| +  ++.++.+++++.+++++|.++++..+||+|++|++
T Consensus        36 ~~~pVv~~~~~~lvGivt~~dl~~~~~~~~~~~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~l  112 (130)
T 3hf7_A           36 GRIVLYRDSLDDAISMLRVREAYRLMTEKKEFTKEIMLRAA-D--EIYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDI  112 (130)
T ss_dssp             SEEEEESSSGGGEEEEEEHHHHHHHHTSSSCCCHHHHHHHS-B--CCCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCE
T ss_pred             CeEEEEcCCCCcEEEEEEHHHHHHHHhccCccchhhHHHhc-c--CCeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCE
Confidence            46677754 45666777666665543322 23456789999 5  68899999999999999999999999999988999


Q ss_pred             EEEeeccceeeee
Q 030753          129 VGLVSDYDLLALD  141 (172)
Q Consensus       129 vGIVt~~Dll~~~  141 (172)
                      +|+||..|+++..
T Consensus       113 vGiit~~Dil~~l  125 (130)
T 3hf7_A          113 QGLVTVEDILEEI  125 (130)
T ss_dssp             EEEEEHHHHHHHH
T ss_pred             EEEeeHHHHHHHH
Confidence            9999999998643

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.85  E-value=9.4e-10  Score=82.18  Aligned_cols=83  Identities=16%  Similarity=0.148  Sum_probs=66.4

Q ss_pred             cccchhhhhc-cCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSALR-RSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      .++|+++..+ ...|.+....+.......  ...+++++|.+   +.++.+++++.+++++|.++++..+||+|++|+++
T Consensus        72 ~~~pVvd~~~~~lvGivt~~dl~~~~~~~--~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~  146 (156)
T 3oi8_A           72 SRFPVIGEDKDEVLGILHAKDLLKYMFNP--EQFHLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTS  146 (156)
T ss_dssp             SEEEEESSSTTCEEEEEEGGGGGGGSSCG--GGCCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEE
T ss_pred             CEEEEEcCCCCcEEEEEEHHHHHHHHHcC--CcccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEE
Confidence            4667777653 566666666665443221  56789999954   78999999999999999999999999999889999


Q ss_pred             EEeecccee
Q 030753          130 GLVSDYDLL  138 (172)
Q Consensus       130 GIVt~~Dll  138 (172)
                      |+||..|++
T Consensus       147 Givt~~Dil  155 (156)
T 3oi8_A          147 GLVTFEDII  155 (156)
T ss_dssp             EEEEHHHHC
T ss_pred             EEEEHHHhc
Confidence            999999986

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.85  E-value=1.6e-10  Score=87.16  Aligned_cols=88  Identities=19%  Similarity=0.258  Sum_probs=68.5

Q ss_pred             ecccchhhhhccCceeeecCceeccCCC-----CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAA-----PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      +.++|+++..+...|.++...+......     ......+++++|++  ++.++.+++++.+++++|.++++  +||+|+
T Consensus        48 ~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~--lpVVd~  123 (156)
T 3k6e_A           48 YTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMTKT--DVAVVSPDFTITEVLHKLVDESF--LPVVDA  123 (156)
T ss_dssp             SSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTCBC--SCCCBCTTCCHHHHHHHTTTSSE--EEEECT
T ss_pred             CcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhhcC--CceecccccHHHHHHHHHHHcCC--eEEEec
Confidence            4567788766666777766555432221     12245789999999  99999999999999999998876  999998


Q ss_pred             CccEEEEeeccceeeee
Q 030753          125 DWKLVGLVSDYDLLALD  141 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~  141 (172)
                      +|+++|+||.+|+++..
T Consensus       124 ~g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A          124 EGIFQGIITRKSILKAV  140 (156)
T ss_dssp             TSBEEEEEEHHHHHHHH
T ss_pred             CCEEEEEEEHHHHHHHH
Confidence            89999999999999754

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.85  E-value=9.7e-10  Score=79.38  Aligned_cols=85  Identities=13%  Similarity=0.061  Sum_probs=67.0

Q ss_pred             cccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++|+++.. +...|.+....+.....   ....+++++|.+   +.++.+++++.+++++|.++++..+||+|++|+++
T Consensus        39 ~~~pVvd~~~~~~~Givt~~dl~~~~~---~~~~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~  112 (129)
T 3jtf_A           39 SRFPVYEDDRDNIIGILLAKDLLRYML---EPALDIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGIS  112 (129)
T ss_dssp             SEEEEESSSTTCEEEEEEGGGGGGGGT---CTTSCGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEE
T ss_pred             CEEEEEcCCCCcEEEEEEHHHHHhHhc---cCCcCHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEE
Confidence            456777764 56667776666654432   245689999954   78999999999999999999999999999889999


Q ss_pred             EEeeccceeeee
Q 030753          130 GLVSDYDLLALD  141 (172)
Q Consensus       130 GIVt~~Dll~~~  141 (172)
                      |+||..|+++..
T Consensus       113 Giit~~Dil~~l  124 (129)
T 3jtf_A          113 GLVTMEDVLEQI  124 (129)
T ss_dssp             EEEEHHHHHHHH
T ss_pred             EEEEHHHHHHHH
Confidence            999999998643

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.84  E-value=8.4e-10  Score=82.67  Aligned_cols=58  Identities=34%  Similarity=0.488  Sum_probs=53.7

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ...+|+++|++  ++.++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+++.
T Consensus         3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~   60 (160)
T 2o16_A            3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAA   60 (160)
T ss_dssp             CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHH
Confidence            34689999999  99999999999999999999999999999988999999999999864

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.83  E-value=1.3e-09  Score=78.40  Aligned_cols=72  Identities=21%  Similarity=0.312  Sum_probs=59.2

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc--CCCCCCCCCCc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFP  155 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~--~~~~~~~~m~~  155 (172)
                      ...+|+++|++  ++.++.+++++.+++++|.+++++.+||+| +|+++|+|+.+|+.+.....  ......+.|.+
T Consensus         2 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~   75 (133)
T 2ef7_A            2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTA   75 (133)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE
T ss_pred             CcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCCcccCHHHHcCC
Confidence            45689999999  899999999999999999999999999999 89999999999998643322  23445555543

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.82  E-value=9e-10  Score=79.79  Aligned_cols=89  Identities=21%  Similarity=0.241  Sum_probs=71.8

Q ss_pred             cccchhhhhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++++++..+...|.++...+....+ .......+++++|.+  ++.++.+++++.+++++|.+++++.+ |+|++|+++
T Consensus        39 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~~g~~~  115 (138)
T 2yzi_A           39 GSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHI-LIEEEGKIV  115 (138)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEE-EEEETTEEE
T ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHHHhcCCcccCCHHHHhhC--CCeEECCCCcHHHHHHHHHhcCCCEE-EECCCCCEE
Confidence            45677776677777777777653222 222356789999998  89999999999999999999999999 999789999


Q ss_pred             EEeeccceeeeec
Q 030753          130 GLVSDYDLLALDS  142 (172)
Q Consensus       130 GIVt~~Dll~~~~  142 (172)
                      |+||..|+++...
T Consensus       116 Giit~~dil~~~~  128 (138)
T 2yzi_A          116 GIFTLSDLLEASR  128 (138)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHHH
Confidence            9999999986544

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.82  E-value=8.6e-10  Score=81.12  Aligned_cols=88  Identities=13%  Similarity=0.238  Sum_probs=70.5

Q ss_pred             cccchhhhhccCceeeecCceeccCCC------CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      +++|+++..+...|.++...+......      ......+++++|.+  ++.++.+++++.+++++|.++++  +||+|+
T Consensus        49 ~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~  124 (150)
T 3lqn_A           49 SAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQVMKQ--DIPVLKLEDSFAKALEMTIDHPF--ICAVNE  124 (150)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGGTCBS--SCCEEETTCBHHHHHHHHHHCSE--EEEECT
T ss_pred             cEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHHHhcC--CCceeCCCCCHHHHHHHHHhCCE--EEEECC
Confidence            456777777777777766666544321      12356789999998  89999999999999999999997  999998


Q ss_pred             CccEEEEeeccceeeeec
Q 030753          125 DWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~~  142 (172)
                      +|+++|+||..|+++...
T Consensus       125 ~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A          125 DGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             TCBEEEEEEHHHHHHHHH
T ss_pred             CCcEEEEEEHHHHHHHHH
Confidence            899999999999986543

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.82  E-value=1.8e-09  Score=82.54  Aligned_cols=85  Identities=22%  Similarity=0.190  Sum_probs=66.0

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc----cCCCCCCCCCCcCc
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI----SGSGRADNSMFPEV  157 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~----~~~~~~~~~m~~~~  157 (172)
                      ..+|+++|++  +++++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+++....    .........|.+.+
T Consensus         8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            3689999998  99999999999999999999999999999877999999999999865331    22445555665432


Q ss_pred             ------cchhhhhhhhc
Q 030753          158 ------DSTWKVYIQRG  168 (172)
Q Consensus       158 ------~~l~~~l~~i~  168 (172)
                            .++.+.++.+.
T Consensus        86 ~~v~~~~~l~~a~~~m~  102 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLS  102 (184)
T ss_dssp             CEEETTCBHHHHHHHHH
T ss_pred             cEECCCCCHHHHHHHHH
Confidence                  44555555443

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.82  E-value=5.9e-10  Score=80.28  Aligned_cols=88  Identities=18%  Similarity=0.318  Sum_probs=70.4

Q ss_pred             cccchhhhhccCceeeecCceeccCCC--CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++++++..+...|.++...+....+.  ......+++++|.+  ++.++.+++++.+++++|.+++++.+||+|+ |++
T Consensus        40 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~  116 (133)
T 1y5h_A           40 GALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVISE-HRL  116 (133)
T ss_dssp             SEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEE
T ss_pred             CeEEEECCCCeEEEEEeHHHHHHHHHhcCCCccccCHHHHhcC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEE
Confidence            456777666777777777666532221  12245789999998  8999999999999999999999999999996 899


Q ss_pred             EEEeeccceeeee
Q 030753          129 VGLVSDYDLLALD  141 (172)
Q Consensus       129 vGIVt~~Dll~~~  141 (172)
                      +|+||..|+++..
T Consensus       117 ~Giit~~dil~~l  129 (133)
T 1y5h_A          117 VGIVTEADIARHL  129 (133)
T ss_dssp             EEEEEHHHHHHTC
T ss_pred             EEEEEHHHHHHHH
Confidence            9999999998643

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.81  E-value=2.4e-10  Score=85.97  Aligned_cols=89  Identities=21%  Similarity=0.215  Sum_probs=71.6

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC--CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++++++..+...|.++...+...-...  .....+++++|.+  ++.++.+++++.+++++|.++++..+||+|+ |++
T Consensus        59 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~  135 (165)
T 3fhm_A           59 GAVVVTDADGVVLGIFTERDLVKAVAGQGAASLQQSVSVAMTK--NVVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRL  135 (165)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGGTSBGGGTSBS--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEE
T ss_pred             CEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccccCCHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEE
Confidence            4567777777777777666664432211  2345789999998  9999999999999999999999999999997 999


Q ss_pred             EEEeeccceeeeec
Q 030753          129 VGLVSDYDLLALDS  142 (172)
Q Consensus       129 vGIVt~~Dll~~~~  142 (172)
                      +|+||..|+++...
T Consensus       136 ~Giit~~dil~~~~  149 (165)
T 3fhm_A          136 AGIISIGDVVKARI  149 (165)
T ss_dssp             EEEEEHHHHHHHTT
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999987544

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.81  E-value=3.6e-10  Score=80.30  Aligned_cols=87  Identities=22%  Similarity=0.245  Sum_probs=67.5

Q ss_pred             cccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +++++++ .+...|.++...+...... ......+++++|.+  ++.++.+++++.++++.|.+++++.+||+|+ |+++
T Consensus        33 ~~~~Vvd-~~~~~G~it~~dl~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~  108 (125)
T 1pbj_A           33 GSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEED-DEII  108 (125)
T ss_dssp             CEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEE
T ss_pred             CEEEEEe-CCeeEEEEeHHHHHHHHhcCCcccccCHHHHcCC--CCeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEE
Confidence            3556666 5555666655555422111 12246789999998  8999999999999999999999999999997 9999


Q ss_pred             EEeeccceeeee
Q 030753          130 GLVSDYDLLALD  141 (172)
Q Consensus       130 GIVt~~Dll~~~  141 (172)
                      |+||.+|+++..
T Consensus       109 Gvit~~dl~~~l  120 (125)
T 1pbj_A          109 GVISATDILRAK  120 (125)
T ss_dssp             EEEEHHHHHHHH
T ss_pred             EEEEHHHHHHHH
Confidence            999999998643

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.80  E-value=1.5e-09  Score=81.05  Aligned_cols=73  Identities=25%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc---cCCCCCCCCCCc
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI---SGSGRADNSMFP  155 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~---~~~~~~~~~m~~  155 (172)
                      +..++|+++|++  . +++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+.+....   .....+.+.|.+
T Consensus        14 l~~~~v~~im~~--~-~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~v~~~m~~   89 (159)
T 3fv6_A           14 LKKLQVKDFQSI--P-VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVPVHIIMTR   89 (159)
T ss_dssp             HTTCBGGGSCBC--C-CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSCSCTTTCBGGGTSEE
T ss_pred             HhhCCHHHHcCC--C-EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhccCcccCcCHHHHHcC
Confidence            356799999987  5 589999999999999999999999999988999999999999875422   123455555553

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.80  E-value=4.4e-10  Score=83.49  Aligned_cols=87  Identities=13%  Similarity=0.099  Sum_probs=67.7

Q ss_pred             cccchh-hh-hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRV-SA-LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~-~~-~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++|++ +. .+...|.+....+.......  ...+++++| +  ++.++.+++++.+++++|.++++..+||+|++|++
T Consensus        54 ~~~pVv~d~~~~~lvGivt~~dl~~~~~~~--~~~~v~~~m-~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~  128 (153)
T 3oco_A           54 SRFPVTADNDKDKIIGYAYNYDIVRQARID--DKAKISTIM-R--DIVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGT  128 (153)
T ss_dssp             SEEEEEETTEEEEEEEEEEHHHHHHHHHHH--TTSBGGGTC-B--CCEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCE
T ss_pred             CEEEEEECCCCCcEEEEEEHHHHHhHHhcC--CCCcHHHHh-C--CCeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCE
Confidence            456777 43 35556666555554332111  256899999 7  89999999999999999999999999999988999


Q ss_pred             EEEeeccceeeeec
Q 030753          129 VGLVSDYDLLALDS  142 (172)
Q Consensus       129 vGIVt~~Dll~~~~  142 (172)
                      +|+||..|+++...
T Consensus       129 vGivt~~dil~~l~  142 (153)
T 3oco_A          129 SGIITDKDVYEELF  142 (153)
T ss_dssp             EEEECHHHHHHHHH
T ss_pred             EEEeeHHHHHHHHh
Confidence            99999999997544

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.80  E-value=7.4e-10  Score=80.08  Aligned_cols=86  Identities=21%  Similarity=0.285  Sum_probs=67.4

Q ss_pred             ccchhhhhccCceeeecCceeccCCC--CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      ++++++ .+...|.++...+..+...  ......+++++|.+  ++.++.+++++.+++++|.+++++.+||+| +|+++
T Consensus        42 ~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~  117 (135)
T 2rc3_A           42 ALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVI  117 (135)
T ss_dssp             EEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEE
T ss_pred             EEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEE
Confidence            456665 5555666655555432221  12356799999999  999999999999999999999999999999 79999


Q ss_pred             EEeeccceeeee
Q 030753          130 GLVSDYDLLALD  141 (172)
Q Consensus       130 GIVt~~Dll~~~  141 (172)
                      |+||..|+++..
T Consensus       118 Giit~~dll~~~  129 (135)
T 2rc3_A          118 GLLSIGDLVKDA  129 (135)
T ss_dssp             EEEEHHHHHHHH
T ss_pred             EEEEHHHHHHHH
Confidence            999999998654

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.80  E-value=9.9e-10  Score=84.05  Aligned_cols=90  Identities=17%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             cccchhhhhccCceeeecCceeccCC--CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +.+++++..+...|.++...+.....  .......+++++|.+  ++.++.+++++.+++++|.+++++.+||+|++|++
T Consensus        41 ~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~  118 (184)
T 1pvm_A           41 YGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV  118 (184)
T ss_dssp             CEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCC--CCcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeE
Confidence            34666765566666665555543322  113356789999998  89999999999999999999999999999987999


Q ss_pred             EEEeeccceeeeec
Q 030753          129 VGLVSDYDLLALDS  142 (172)
Q Consensus       129 vGIVt~~Dll~~~~  142 (172)
                      +|+||..|+++...
T Consensus       119 ~Givt~~dll~~~~  132 (184)
T 1pvm_A          119 VGIVTLTDLSRYLS  132 (184)
T ss_dssp             EEEEEHHHHTTTSC
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999986543

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.79  E-value=8.9e-10  Score=81.47  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             cccchhhhhccCceeeecCceeccCCC------CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      +.+|+++..+...|.++...+......      ......+++++|.+  ++.++.+++++.+++++|.++++  +||+|+
T Consensus        45 ~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~  120 (157)
T 2emq_A           45 SAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVMNR--NIPRLRLDDSLMKAVGLIVNHPF--VCVEND  120 (157)
T ss_dssp             SEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTCBC--CCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred             eEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHHHhCC--CCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence            456777766666777766665443221      11246789999999  99999999999999999999988  999998


Q ss_pred             CccEEEEeeccceeeeec
Q 030753          125 DWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~~  142 (172)
                      +|+++|+||.+|+++...
T Consensus       121 ~g~~~Giit~~dil~~~~  138 (157)
T 2emq_A          121 DGYFAGIFTRREVLKQLN  138 (157)
T ss_dssp             SSSEEEEEEHHHHHHHHH
T ss_pred             CCeEEEEEEHHHHHHHHH
Confidence            899999999999986544

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.78  E-value=2.8e-09  Score=85.63  Aligned_cols=60  Identities=32%  Similarity=0.474  Sum_probs=55.1

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ...+++++|++  ++.++.+++++.+++++|.++++.++||+|++|+++|+||.+|+++...
T Consensus       219 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          219 PNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGGGC
T ss_pred             ccCCHHHhcCC--CCceeCCCCCHHHHHHHHHHcCcceeEEECCCCCEEEEEeHHHHHHHHH
Confidence            45789999999  9999999999999999999999999999997789999999999987543

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.78  E-value=8.5e-10  Score=82.63  Aligned_cols=88  Identities=19%  Similarity=0.277  Sum_probs=68.3

Q ss_pred             cccchhhhhccCceeeecCceeccCC---------CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcce
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA---------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV  121 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~---------~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPV  121 (172)
                      +++|+++..+...|.++...+.....         .......++.++|.+  ++.++.+++++.+++++|.++++..+||
T Consensus        37 ~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpV  114 (160)
T 2o16_A           37 RHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPV  114 (160)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEE
T ss_pred             CEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHHHHhcC--CCeEECCCCCHHHHHHHHHHhCCCEEEE
Confidence            35667766666666666655543211         012346789999998  9999999999999999999999999999


Q ss_pred             ecCCccEEEEeeccceeeee
Q 030753          122 IDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus       122 vd~~~~lvGIVt~~Dll~~~  141 (172)
                      +|+ |+++|+||..||++..
T Consensus       115 vd~-g~lvGiit~~dil~~~  133 (160)
T 2o16_A          115 VAK-DVLVGIITDSDFVTIA  133 (160)
T ss_dssp             EET-TEEEEEECHHHHHHHH
T ss_pred             EEC-CEEEEEEEHHHHHHHH
Confidence            997 9999999999998653

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.77  E-value=2.2e-09  Score=85.59  Aligned_cols=59  Identities=27%  Similarity=0.465  Sum_probs=50.0

Q ss_pred             CeeEecceee-ccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~-~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ...+++++|+ +  ++.++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       183 ~~~~v~~im~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          183 QSLPVDYVMTKD--NLVAVSTDDLVEDVKVTMSETRYSNYPVIDENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             GGSBHHHHSBCT--TCCCEETTSBHHHHHHHHHHHCCSEEEEECTTCBEEEEEECC------
T ss_pred             cCCceeeEecCC--ccEEECCCCcHHHHHHHHHhcCCceEEEEcCCCeEEEEEEHHHhhchh
Confidence            3568999999 6  899999999999999999999999999999889999999999998643

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.77  E-value=2.6e-09  Score=77.87  Aligned_cols=72  Identities=18%  Similarity=0.139  Sum_probs=58.9

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCc--cEEEEeeccceeeeeccc--CCCCCCCCCCc
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSIS--GSGRADNSMFP  155 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~--~lvGIVt~~Dll~~~~~~--~~~~~~~~m~~  155 (172)
                      ..+|+++|++  ++.++.+++++.+++++|.+++++.+||+|+++  +++|+|+.+|+++.....  ......+.|.+
T Consensus         4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~   79 (141)
T 2rih_A            4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLDGPAMPIANS   79 (141)
T ss_dssp             -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCCTTSBSGGGCBC
T ss_pred             ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCCCCCCCHHHHcCC
Confidence            4589999998  999999999999999999999999999999877  999999999998653221  23445555544

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.75  E-value=2.4e-09  Score=77.31  Aligned_cols=83  Identities=19%  Similarity=0.270  Sum_probs=62.0

Q ss_pred             Eecceeecc-ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee-ecc---cCCCCCCCCCCcCc-
Q 030753           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL-DSI---SGSGRADNSMFPEV-  157 (172)
Q Consensus        84 ~V~diM~~~-~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~-~~~---~~~~~~~~~m~~~~-  157 (172)
                      +|+++|+++ .++.++.+++++.++++.|.+++++.+||+| +|+++|+|+.+|+++. ...   .......+.|.+.+ 
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   85 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCe
Confidence            899999921 2899999999999999999999999999998 7999999999999852 221   12444555554432 


Q ss_pred             -----cchhhhhhhh
Q 030753          158 -----DSTWKVYIQR  167 (172)
Q Consensus       158 -----~~l~~~l~~i  167 (172)
                           .++.+.++.+
T Consensus        86 ~v~~~~~l~~~~~~m  100 (135)
T 2rc3_A           86 YVDLNNTNEDCMALI  100 (135)
T ss_dssp             CBCTTCBHHHHHHHH
T ss_pred             EECCCCcHHHHHHHH
Confidence                 3445555444

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.75  E-value=9.3e-10  Score=78.12  Aligned_cols=55  Identities=25%  Similarity=0.379  Sum_probs=51.2

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +|+++|++  ++.++.+++++.++++.|.+++++.+||+| +|+++|+|+.+|+.+..
T Consensus         2 ~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~   56 (125)
T 1pbj_A            2 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAI   56 (125)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHH
T ss_pred             CHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHH
Confidence            68899998  999999999999999999999999999999 89999999999998543

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.75  E-value=2e-09  Score=84.83  Aligned_cols=82  Identities=20%  Similarity=0.148  Sum_probs=66.6

Q ss_pred             cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV  132 (172)
                      .++++..+...|.++...+..     .....+++++|++  ++.++.+++++.+++++|.++++..+||+|++|+++|+|
T Consensus        91 ~~Vvd~~~~lvGivt~~dll~-----~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiI  163 (205)
T 3kxr_A           91 LFIVDEADKYLGTVRRYDIFK-----HEPHEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRV  163 (205)
T ss_dssp             EEEECTTCBEEEEEEHHHHTT-----SCTTSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEE
T ss_pred             EEEEcCCCeEEEEEEHHHHHh-----CCCcchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEE
Confidence            355665666666665444432     2345689999998  899999999999999999999999999999889999999


Q ss_pred             eccceeeee
Q 030753          133 SDYDLLALD  141 (172)
Q Consensus       133 t~~Dll~~~  141 (172)
                      |..|++...
T Consensus       164 T~~Dil~~i  172 (205)
T 3kxr_A          164 TLRAATALV  172 (205)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHHHH
Confidence            999998654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.74  E-value=1.4e-09  Score=80.71  Aligned_cols=88  Identities=25%  Similarity=0.341  Sum_probs=68.7

Q ss_pred             ccchhhhhccCceeeecCceeccCCC--CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      ++++.+ .+...|.++...+...-..  ......+++++|.+  ++.++.+++++.+++++|.+++++.+||+| +|+++
T Consensus        46 ~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~  121 (157)
T 4fry_A           46 ALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLI  121 (157)
T ss_dssp             EEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEE
T ss_pred             EEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEE
Confidence            445533 5555666666555443321  12356799999999  899999999999999999999999999999 79999


Q ss_pred             EEeeccceeeeecc
Q 030753          130 GLVSDYDLLALDSI  143 (172)
Q Consensus       130 GIVt~~Dll~~~~~  143 (172)
                      |+||.+|+++....
T Consensus       122 Giit~~dil~~l~~  135 (157)
T 4fry_A          122 GLISIGDLVKSVIA  135 (157)
T ss_dssp             EEEEHHHHHHHHHT
T ss_pred             EEEEHHHHHHHHHH
Confidence            99999999976543

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.73  E-value=1.1e-09  Score=81.50  Aligned_cols=88  Identities=11%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCC------CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPS------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      +++|+++..+...|.++...+........      ....+++++|.+  ++.++.+++++.+++++|.++++  +||+|+
T Consensus        48 ~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~  123 (159)
T 1yav_A           48 TAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVEND  123 (159)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred             cEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHhcCC--CCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence            45677776666667776666544322211      356789999999  89999999999999999999987  999998


Q ss_pred             CccEEEEeeccceeeeec
Q 030753          125 DWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~~  142 (172)
                      +|+++|+||..|+++...
T Consensus       124 ~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A          124 EQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             TCBEEEEEEHHHHHHHHH
T ss_pred             CCeEEEEEEHHHHHHHHH
Confidence            899999999999986543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.72  E-value=2e-09  Score=81.50  Aligned_cols=60  Identities=13%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ....+++++|.+  ++.++.+++++.+++++|.++++..+||+| +|+++|+||..|+++...
T Consensus       105 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A          105 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccCccHHHhhCc--CCeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            356899999998  899999999999999999999999999999 799999999999997544

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.72  E-value=4.3e-09  Score=83.90  Aligned_cols=58  Identities=22%  Similarity=0.396  Sum_probs=54.1

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ..+|+|+|++  ++.++.+++++.+|+++|.+++++.+||+|++|+++|+||..|+.+..
T Consensus         6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~   63 (245)
T 3l2b_A            6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATY   63 (245)
T ss_dssp             CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            4589999998  999999999999999999999999999999889999999999998654

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.71  E-value=1.4e-09  Score=78.86  Aligned_cols=91  Identities=15%  Similarity=0.195  Sum_probs=67.8

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC--CCCeeEecceeeccc----eeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~~~~----~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      +++++++..+...|.++...+.......  .....++.++|.+..    ++.++.+++++.+++++|.++++..+||+|+
T Consensus        43 ~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  122 (144)
T 2nyc_A           43 SSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD  122 (144)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred             ceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECC
Confidence            4567777666666776666554332211  123568999997621    4789999999999999999999999999998


Q ss_pred             CccEEEEeeccceeeee
Q 030753          125 DWKLVGLVSDYDLLALD  141 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~  141 (172)
                      +|+++|+||..|+++..
T Consensus       123 ~g~~~Giit~~dil~~l  139 (144)
T 2nyc_A          123 VGRLVGVLTLSDILKYI  139 (144)
T ss_dssp             TSBEEEEEEHHHHHHHH
T ss_pred             CCCEEEEEEHHHHHHHH
Confidence            89999999999998654

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.69  E-value=9.9e-09  Score=80.78  Aligned_cols=84  Identities=13%  Similarity=0.157  Sum_probs=64.8

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHh---hhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCcC
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK---RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~---~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~  156 (172)
                      +...+++++|++  +++++.+++++.++++.|.++   +++.+||+|++|+++|+|+.+|++...   ....+..+|.++
T Consensus        51 ~~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~~---~~~~v~~im~~~  125 (205)
T 3kxr_A           51 YSENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKHE---PHEPLISLLSED  125 (205)
T ss_dssp             SCTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTSC---TTSBGGGGCCSS
T ss_pred             CCcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhCC---CcchHHHHhcCC
Confidence            456689999999  999999999999999999987   788999999889999999999998532   233445555432


Q ss_pred             ------ccchhhhhhhhc
Q 030753          157 ------VDSTWKVYIQRG  168 (172)
Q Consensus       157 ------~~~l~~~l~~i~  168 (172)
                            -.++.+.++.++
T Consensus       126 ~~~v~~~~~l~~a~~~m~  143 (205)
T 3kxr_A          126 SRALTANTTLLDAAEAIE  143 (205)
T ss_dssp             CCCEETTSCHHHHHHHHH
T ss_pred             CeEECCCCCHHHHHHHHH
Confidence                  244455555444

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.69  E-value=5.4e-09  Score=85.34  Aligned_cols=60  Identities=23%  Similarity=0.418  Sum_probs=54.6

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--ccEEEEeeccceeee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL  140 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~lvGIVt~~Dll~~  140 (172)
                      ....++|+|+|++  +++++.+++++.+++++|.+++++.+||||++  ++++|+|+.+||+++
T Consensus         9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~   70 (250)
T 2d4z_A            9 NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGL   70 (250)
T ss_dssp             CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHH
Confidence            3467799999999  99999999999999999999999999999864  689999999999864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.65  E-value=4e-09  Score=79.77  Aligned_cols=61  Identities=30%  Similarity=0.465  Sum_probs=53.3

Q ss_pred             CCeeEecceeeccce--eeee--cccccHHHHHHHHHHhhhcCccee--cCCccEEEEeeccceeee
Q 030753           80 SGVYTVGDFMTTKEE--LHVV--KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        80 ~~~~~V~diM~~~~~--~~~v--~~~~sl~eal~~m~~~~i~~lPVv--d~~~~lvGIVt~~Dll~~  140 (172)
                      ....+|+++|++..+  ++++  .+++++.+++++|.+++++.+||+  |++|+++|+|+.+|+++.
T Consensus         8 ~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~   74 (185)
T 2j9l_A            8 AHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIIS   74 (185)
T ss_dssp             -CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             hccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHH
Confidence            356799999998211  7888  999999999999999999999999  677999999999999865

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.65  E-value=6.6e-09  Score=92.51  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=68.3

Q ss_pred             CCeeEecceeeccceeeeeccc-ccHHHHHHHHHHhhhcCcceec-CCccEEEEeeccceeeeecc---cCCCCCCCCCC
Q 030753           80 SGVYTVGDFMTTKEELHVVKPT-TTVDEALEILVEKRITGFPVID-DDWKLVGLVSDYDLLALDSI---SGSGRADNSMF  154 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~-~sl~eal~~m~~~~i~~lPVvd-~~~~lvGIVt~~Dll~~~~~---~~~~~~~~~m~  154 (172)
                      +...+|+++|++  +++++.++ +++.+++++|.+++++.+||+| ++++++|+||.+||++....   .....+.++|.
T Consensus       381 l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~  458 (527)
T 3pc3_A          381 WWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALN  458 (527)
T ss_dssp             TTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEE
T ss_pred             ccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhc
Confidence            456899999998  99999999 9999999999999999999999 67999999999999865432   22455666665


Q ss_pred             cCc------cchhhhhhhhc
Q 030753          155 PEV------DSTWKVYIQRG  168 (172)
Q Consensus       155 ~~~------~~l~~~l~~i~  168 (172)
                      .++      +++.+.++.+.
T Consensus       459 ~~~~~v~~~~~l~~a~~~m~  478 (527)
T 3pc3_A          459 KRVIRLNESEILGKLARVLE  478 (527)
T ss_dssp             TTCCEEETTSBHHHHHHHHT
T ss_pred             CCCeEECCCCcHHHHHHHHh
Confidence            433      44555555443

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.65  E-value=2.4e-08  Score=78.55  Aligned_cols=71  Identities=24%  Similarity=0.276  Sum_probs=58.7

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCcC
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~  156 (172)
                      ...+++++|.+  ++.++.+++++.+++++|.+++++.+||+|++++++|+||.+|+.+...   ...+.+.|.++
T Consensus        11 ~~~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~---~~~v~~im~~~   81 (213)
T 1vr9_A           11 HHMKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL---DSSVFNKVSLP   81 (213)
T ss_dssp             --CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT---TSBSGGGCBCT
T ss_pred             cccCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC---CCcHHHHccCC
Confidence            34578999999  9999999999999999999999999999997899999999999986433   33455556543

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.64  E-value=5.8e-09  Score=85.96  Aligned_cols=83  Identities=16%  Similarity=0.185  Sum_probs=67.4

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..++..|.++...++.     .....+++++|.+  ++.++.+++++.+++++|.++++..+||+|++|+++|+
T Consensus       175 ~~pVvd~~~~lvGivt~~dll~-----~~~~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGi  247 (286)
T 2oux_A          175 YVYVVDQENHLVGVISLRDLIV-----NDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGI  247 (286)
T ss_dssp             EEEEECTTCBEEEEEEHHHHTT-----SCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEE
T ss_pred             EEEEEcCCCeEEEEEEHHHHHc-----CCCCCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEE
Confidence            4567766665555554444432     2356789999998  89999999999999999999999999999988999999


Q ss_pred             eeccceeeee
Q 030753          132 VSDYDLLALD  141 (172)
Q Consensus       132 Vt~~Dll~~~  141 (172)
                      ||..|++...
T Consensus       248 IT~~Dil~~i  257 (286)
T 2oux_A          248 VTVDDIIDVI  257 (286)
T ss_dssp             EEHHHHHHHH
T ss_pred             EEHHHHHHHH
Confidence            9999998653

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.64  E-value=1.5e-08  Score=92.33  Aligned_cols=56  Identities=21%  Similarity=0.045  Sum_probs=50.5

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      +++++|++  ++.++++++++.+++++|.+++++.+||+ ++|+++||||.+|+++...
T Consensus       569 ~v~~iMt~--~pitV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          569 SLVVPCDV--SPIVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             --CCSCCC--CCCEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECCC
T ss_pred             ccchhhcC--CCceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHHh
Confidence            38899999  99999999999999999999999999999 5799999999999987544

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.63  E-value=2.9e-08  Score=79.68  Aligned_cols=99  Identities=15%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      ++.+|+++..+...|.+.     ..++.......+++++|.+  ++.++.+++++.++++.|.+++++.+||+|++|+++
T Consensus        32 ~~~~pV~d~~~~~~Giv~-----~~dl~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~  104 (282)
T 2yzq_A           32 VRSFPVVNKEGKLVGIIS-----VKRILVNPDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV  104 (282)
T ss_dssp             CCEEEEECTTCCEEEEEE-----SSCC----------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred             CCeEEEEcCCCcEEEEEE-----HHHHHhhhccCCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEE
Confidence            456777775554445443     3333333356789999998  899999999999999999999999999999889999


Q ss_pred             EEeeccceee-eeccc---CCCCCCCCCCc
Q 030753          130 GLVSDYDLLA-LDSIS---GSGRADNSMFP  155 (172)
Q Consensus       130 GIVt~~Dll~-~~~~~---~~~~~~~~m~~  155 (172)
                      |++|.+|+.+ .....   ........|..
T Consensus       105 Giit~~di~~~~~~~~~~~~~~~v~~~m~~  134 (282)
T 2yzq_A          105 GILTVGDIIRRYFAKSEKYKGVEIEPYYQR  134 (282)
T ss_dssp             EEEEHHHHHHHTTTTCSGGGGCBSTTTSBS
T ss_pred             EEEEHHHHHHHHHhccCCcccCcHHHHhCC
Confidence            9999999987 54321   13445556644

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.63  E-value=8.3e-09  Score=83.81  Aligned_cols=88  Identities=20%  Similarity=0.262  Sum_probs=68.5

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCC-----------CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCc
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPS-----------SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGF  119 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~l  119 (172)
                      ++.++++  +...+.++...+...-....           ....+++++|++  +++++.+++++.+++++|.+++++++
T Consensus        52 ~~~~V~d--~~l~GivT~~Di~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~l  127 (296)
T 3ddj_A           52 GRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSL  127 (296)
T ss_dssp             CEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEE
T ss_pred             ceEEEEC--CeEEEEEeHHHHHHHhcccccccccchhhHHHhcccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEE
Confidence            4556666  55566665555554432111           124689999999  99999999999999999999999999


Q ss_pred             ceecCCccEEEEeeccceeeeec
Q 030753          120 PVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       120 PVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ||+|++|+++|++|.+|+++...
T Consensus       128 pVvd~~~~lvGivt~~dl~~~~~  150 (296)
T 3ddj_A          128 PVVDINDKPVGIVTEREFLLLYK  150 (296)
T ss_dssp             EEECTTSCEEEEEEHHHHGGGGG
T ss_pred             EEEcCCCcEEEEEeHHHHHHhhh
Confidence            99998899999999999986543

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.63  E-value=4.6e-09  Score=78.08  Aligned_cols=59  Identities=22%  Similarity=0.370  Sum_probs=53.2

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ....+++++|.+   +.++.+++++.+++++|.++++..+||+|++|+++|+||..|+++..
T Consensus        93 ~~~~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l  151 (157)
T 1o50_A           93 LIAKNASEIMLD---PVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLAL  151 (157)
T ss_dssp             CSSCBHHHHCBC---CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHH
T ss_pred             HcCCcHHHHcCC---CeEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHH
Confidence            356789999976   78899999999999999999999999999789999999999998643

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.62  E-value=6.3e-09  Score=74.77  Aligned_cols=56  Identities=27%  Similarity=0.439  Sum_probs=51.4

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeecccee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL  138 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll  138 (172)
                      ...+++++|.+  ++.++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|++
T Consensus         6 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~   61 (133)
T 1y5h_A            6 TMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIV   61 (133)
T ss_dssp             --CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHH
T ss_pred             hhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHH
Confidence            34589999998  899999999999999999999999999998789999999999998

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.61  E-value=9.9e-09  Score=83.89  Aligned_cols=84  Identities=23%  Similarity=0.309  Sum_probs=66.2

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..++..|.+....++..     ....+++++|.+  ++.++.+++++.+++++|.++++..+||+|++|+++|+
T Consensus       173 ~~~Vvd~~~~lvGivt~~dll~~-----~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGi  245 (278)
T 2yvy_A          173 YIYVVDEKGRLKGVLSLRDLIVA-----DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGI  245 (278)
T ss_dssp             EEEEECTTCBEEEEEEHHHHHHS-----CTTCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             EEEEECCCCCEEEEEEHHHHhcC-----CCCCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEE
Confidence            34566655555555544443322     246689999998  89999999999999999999999999999988999999


Q ss_pred             eeccceeeeec
Q 030753          132 VSDYDLLALDS  142 (172)
Q Consensus       132 Vt~~Dll~~~~  142 (172)
                      ||..|++....
T Consensus       246 vT~~Dil~~i~  256 (278)
T 2yvy_A          246 VTVDDVLDVLE  256 (278)
T ss_dssp             EEHHHHHHHC-
T ss_pred             EEHHHHHHHHH
Confidence            99999986543

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.60  E-value=1.1e-08  Score=75.82  Aligned_cols=59  Identities=20%  Similarity=0.411  Sum_probs=54.2

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC--CccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~--~~~lvGIVt~~Dll~~~  141 (172)
                      ...+|+++|++  ++.++.+++++.+++++|.+++++.+||+|+  +|+++|+||.+|+.+..
T Consensus        11 ~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~   71 (164)
T 2pfi_A           11 HHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQAL   71 (164)
T ss_dssp             CSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHH
T ss_pred             cCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHH
Confidence            56799999999  9999999999999999999999999999996  68999999999998543

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.59  E-value=2.3e-08  Score=79.87  Aligned_cols=72  Identities=21%  Similarity=0.362  Sum_probs=59.3

Q ss_pred             eeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC--CCCCCCCCCc
Q 030753           82 VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG--SGRADNSMFP  155 (172)
Q Consensus        82 ~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~--~~~~~~~m~~  155 (172)
                      ..+++++|++  ++.++.+++++.++++.|.+++++++||+|++|+++|++|.+|+++......  .......|.+
T Consensus        83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~v~~~m~~  156 (280)
T 3kh5_A           83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKIDENEVIDDYITR  156 (280)
T ss_dssp             TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSCTTCBSGGGCBC
T ss_pred             hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCCCCCCHHHHhCC
Confidence            4589999999  9999999999999999999999999999998899999999999986543222  2244445543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.56  E-value=5.3e-09  Score=85.99  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCC--CCCeeEecceeeccc----eeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMTTKE----ELHVVKPTTTVDEALEILVEKRITGFPVID  123 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~~~~----~~~~v~~~~sl~eal~~m~~~~i~~lPVvd  123 (172)
                      .+++|+++..+...|.++...+...-...  .....+++++|+++.    ++.++.+++++.+++++|.++++.++||+|
T Consensus       221 ~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd  300 (323)
T 3t4n_C          221 VSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD  300 (323)
T ss_dssp             CSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCEEEEEC
T ss_pred             CCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCEEEEEC
Confidence            34677787777777777666664432211  113458999998743    578999999999999999999999999999


Q ss_pred             CCccEEEEeeccceeeeec
Q 030753          124 DDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       124 ~~~~lvGIVt~~Dll~~~~  142 (172)
                      ++|+++|+||..|+++...
T Consensus       301 ~~~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          301 DVGRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             TTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcEEEEEEHHHHHHHHH
Confidence            8899999999999987543

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.56  E-value=7.9e-09  Score=79.05  Aligned_cols=86  Identities=14%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             cccchhhhh-ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           51 TSSDRVSAL-RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        51 r~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      ..+|+++.. +...|.+....+.......  ...+++  |.+  ++.++.+++++.+++++|.++++..+||+|++|+++
T Consensus        70 ~~~pVvd~~~~~lvGivt~~Dl~~~~~~~--~~~~v~--~~~--~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde~g~lv  143 (173)
T 3ocm_A           70 SFFPVCRGSLDEVVGIGRAKDLVADLITE--GRVRRN--RLR--DPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIE  143 (173)
T ss_dssp             SEEEEESSSTTSEEEEEEHHHHHHHHHHH--SSCCGG--GSB--CCCEECGGGCHHHHHHHHHHSTTCCEEEECTTCCEE
T ss_pred             CEEEEEeCCCCCEEEEEEHHHHHHHHhcC--CcchhH--hcC--CCeEECCCCcHHHHHHHHHHcCCeEEEEEeCCCCEE
Confidence            456777654 5556666555544332111  245677  446  788999999999999999999999999999889999


Q ss_pred             EEeeccceeeeec
Q 030753          130 GLVSDYDLLALDS  142 (172)
Q Consensus       130 GIVt~~Dll~~~~  142 (172)
                      ||||..|++....
T Consensus       144 GiIT~~Dil~~l~  156 (173)
T 3ocm_A          144 GLVTPIDVFEAIA  156 (173)
T ss_dssp             EEECHHHHHHHHH
T ss_pred             EEEeHHHHHHHHh
Confidence            9999999997554

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.55  E-value=2.2e-08  Score=74.36  Aligned_cols=59  Identities=27%  Similarity=0.416  Sum_probs=54.5

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcC-cceecCCccEEEEeeccceeee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITG-FPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~-lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .....+|+++|++  ++.++.+++++.+++++|.+++++. +||+|++ +++|+||.+|+++.
T Consensus        12 ~~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~   71 (157)
T 1o50_A           12 HMKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKV   71 (157)
T ss_dssp             TCBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHH
T ss_pred             hhccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHH
Confidence            3467899999999  9999999999999999999999999 9999977 99999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.55  E-value=1.7e-08  Score=80.64  Aligned_cols=58  Identities=21%  Similarity=0.465  Sum_probs=53.9

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ...+++++|++  ++.++.+++++.+++++|.++++.++||+|++|+++|+||.+|+++.
T Consensus       221 ~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          221 TNVRMEEIMKR--DVITAKEGDKLKKIAEIMVTNDIGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             HHCBHHHHSBS--SCCCBCTTCBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             hCCcHHHHhcC--CCEEECCCCCHHHHHHHHHHCCCCEEEEECCCCeEEEEEeHHHHHHh
Confidence            35689999998  99999999999999999999999999999988899999999999864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.54  E-value=5.2e-09  Score=77.53  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=67.3

Q ss_pred             ecccchhhh--hccCceeeecCceeccCCCC-----CCCeeEecceeeccce------eeeecccccHHHHHHHHHHhhh
Q 030753           50 ATSSDRVSA--LRRSSAVFASGTLTANSAAP-----SSGVYTVGDFMTTKEE------LHVVKPTTTVDEALEILVEKRI  116 (172)
Q Consensus        50 ~r~~~~~~~--~~~~~~~~~~g~~~~~~~~~-----~~~~~~V~diM~~~~~------~~~v~~~~sl~eal~~m~~~~i  116 (172)
                      .+++|+++.  .+...|.++...+.......     .....++.++|.+  +      +.++.+++++.+++++|.++++
T Consensus        44 ~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~~~~~~~v~~~~~l~~~~~~m~~~~~  121 (164)
T 2pfi_A           44 VTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILAR--GCPTEPVTLTLFSETTLHQAQNLFKLLNL  121 (164)
T ss_dssp             CSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHHHHT--TCCCBCCCCCEETTCBHHHHHHHHHHTTC
T ss_pred             CCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhhhcc--cccccCCceEECCCCcHHHHHHHHHHhCC
Confidence            346677764  45566666555554322111     1134578999987  6      7889999999999999999999


Q ss_pred             cCcceecCCccEEEEeeccceeeeec
Q 030753          117 TGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       117 ~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      +.+||+| +|+++|+||..|+++...
T Consensus       122 ~~lpVvd-~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A          122 QSLFVTS-RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             SEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             CEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            9999999 799999999999986543

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.54  E-value=2.4e-08  Score=72.19  Aligned_cols=59  Identities=25%  Similarity=0.479  Sum_probs=52.6

Q ss_pred             CeeEecc---eeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           81 GVYTVGD---FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~d---iM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ...++++   +|.+  ++.++.+++++.+++++|.+++++.+||+|++|+++|+|+.+|+.+..
T Consensus         6 ~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~   67 (144)
T 2nyc_A            6 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI   67 (144)
T ss_dssp             GGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             hhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHh
Confidence            3446777   8887  899999999999999999999999999999889999999999998643

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.53  E-value=5.8e-08  Score=79.31  Aligned_cols=83  Identities=28%  Similarity=0.289  Sum_probs=64.6

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHh-----hhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~-----~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      ...+++++|++  +++++.+++++.++++.|.++     +++.+||+|++|+++|+||.+|++..   .....+...|.+
T Consensus       133 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~---~~~~~v~~im~~  207 (278)
T 2yvy_A          133 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---DPRTRVAEIMNP  207 (278)
T ss_dssp             CTTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS---CTTCBSTTTSBS
T ss_pred             CcchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC---CCCCcHHHHhCC
Confidence            45689999999  999999999999999999987     78999999988999999999999853   234455556643


Q ss_pred             Cc------cchhhhhhhhc
Q 030753          156 EV------DSTWKVYIQRG  168 (172)
Q Consensus       156 ~~------~~l~~~l~~i~  168 (172)
                      .+      .++.+.++.++
T Consensus       208 ~~~~v~~~~~l~~a~~~m~  226 (278)
T 2yvy_A          208 KVVYVRTDTDQEEVARLMA  226 (278)
T ss_dssp             SCCCEETTSBHHHHHHHHH
T ss_pred             CCeEEeCCCCHHHHHHHHH
Confidence            32      44455555443

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.53  E-value=1.7e-08  Score=81.98  Aligned_cols=89  Identities=20%  Similarity=0.318  Sum_probs=71.3

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      .+++|+++..+...+.++...+.... .......+++++|++  ++.++.+++++.++++.|.+++++.+||+|++|+++
T Consensus       124 ~~~lpVvd~~~~lvGivt~~dl~~~~-~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~  200 (296)
T 3ddj_A          124 FGSLPVVDINDKPVGIVTEREFLLLY-KDLDEIFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVV  200 (296)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHGGGG-GGSCCCCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred             CCEEEEEcCCCcEEEEEeHHHHHHhh-hcccccccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEE
Confidence            35667777666666766665554322 123345699999998  899999999999999999999999999999889999


Q ss_pred             EEeeccceeeee
Q 030753          130 GLVSDYDLLALD  141 (172)
Q Consensus       130 GIVt~~Dll~~~  141 (172)
                      |+||.+|+++..
T Consensus       201 Givt~~dl~~~~  212 (296)
T 3ddj_A          201 GIVTVVNAIKQL  212 (296)
T ss_dssp             EEEEHHHHHHHH
T ss_pred             EEEEHHHHHHHH
Confidence            999999998654

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.51  E-value=1.4e-08  Score=75.13  Aligned_cols=58  Identities=24%  Similarity=0.358  Sum_probs=51.2

Q ss_pred             eEecceeecc----ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~----~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .+|+|+|+++    .++.++.+++++.+++++|.+++++.+||++ +|+++|+|+.+|+++..
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~   68 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKV   68 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHS
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHH
Confidence            4799999963    2568999999999999999999999999965 79999999999998654

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.49  E-value=4.4e-08  Score=80.81  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=70.3

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC--CCCeeEecceee------ccceeeeecccccHHHHHHHHHHhhhcCccee
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMT------TKEELHVVKPTTTVDEALEILVEKRITGFPVI  122 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~------~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVv  122 (172)
                      +.+++++..+...|.++...+.......  .....+++++|.      +  ++.++.+++++.+++++|.++++..+||+
T Consensus       225 ~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv  302 (330)
T 2v8q_E          225 SALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVV  302 (330)
T ss_dssp             SEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             CeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhccccccC--CCeEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence            4567777666667777666665433321  112568889884      5  88999999999999999999999999999


Q ss_pred             cCCccEEEEeeccceeeeec
Q 030753          123 DDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus       123 d~~~~lvGIVt~~Dll~~~~  142 (172)
                      |++|+++|+||..|+++...
T Consensus       303 d~~g~l~Giit~~Dil~~~~  322 (330)
T 2v8q_E          303 DEHDVVKGIVSLSDILQALV  322 (330)
T ss_dssp             CTTSBEEEEEEHHHHHHHHH
T ss_pred             cCCCcEEEEEeHHHHHHHHH
Confidence            98899999999999987544

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.46  E-value=2.9e-08  Score=88.06  Aligned_cols=90  Identities=23%  Similarity=0.272  Sum_probs=0.9

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +..+|+++ .+...+.+....+..    ......+|+++|+++++++++.+++++.+++++|.++++..+||+|++|+++
T Consensus       119 ~s~~pVvd-~g~lvGIVt~rDl~~----~~~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lv  193 (490)
T 4avf_A          119 FSGFPVVE-QGELVGIVTGRDLRV----KPNAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLR  193 (490)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCEEEEEE-CCEEEEEEEhHHhhh----ccccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence            45677777 555555554444421    2335679999999544589999999999999999999999999999889999


Q ss_pred             EEeeccceeeeeccc
Q 030753          130 GLVSDYDLLALDSIS  144 (172)
Q Consensus       130 GIVt~~Dll~~~~~~  144 (172)
                      |+||.+|+++....+
T Consensus       194 GiIT~~Dil~~~~~p  208 (490)
T 4avf_A          194 GLVTFRDIEKAKTYP  208 (490)
T ss_dssp             -------------CT
T ss_pred             EEEehHHhhhhccCc
Confidence            999999999865544

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.46  E-value=2e-08  Score=89.22  Aligned_cols=93  Identities=20%  Similarity=0.188  Sum_probs=0.4

Q ss_pred             eecccchhhhh---ccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC
Q 030753           49 LATSSDRVSAL---RRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (172)
Q Consensus        49 ~~r~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~  125 (172)
                      .++.+|+++..   +...+.+....+...   ......+|+++|++.++++++.+++++.+++++|.++++..+||+|++
T Consensus       127 ~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~---~~~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~  203 (503)
T 1me8_A          127 THNTVAVTDDGTPHGVLLGLVTQRDYPID---LTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD  203 (503)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEEECCCcCCeEEEEEEHHHHHhh---hccccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC
Confidence            45667888754   455555544444321   233567899999983339999999999999999999999999999988


Q ss_pred             ccEEEEeeccceeeeeccc
Q 030753          126 WKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus       126 ~~lvGIVt~~Dll~~~~~~  144 (172)
                      |+++|+||.+||++.....
T Consensus       204 g~lvGiIT~~Dil~~~~~~  222 (503)
T 1me8_A          204 QHLRYIVFRKDYDRSQVCH  222 (503)
T ss_dssp             ------------------C
T ss_pred             CeEEEEEEecHHHHhhhcc
Confidence            9999999999999765543

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.46  E-value=1.8e-08  Score=83.21  Aligned_cols=93  Identities=19%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC--CCCeeEecceeecc----ceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP--SSGVYTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~V~diM~~~----~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      +.+++++..+...|.++...+...-...  .....++.++|.+.    .++.++.+++++.+++++|.++++..+||+|+
T Consensus       217 ~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  296 (334)
T 2qrd_G          217 SAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  296 (334)
T ss_dssp             SEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCEEEEECT
T ss_pred             cEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence            3456777666666666665554332211  12356899999831    17889999999999999999999999999998


Q ss_pred             CccEEEEeeccceeeeecc
Q 030753          125 DWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~~~  143 (172)
                      +|+++|+||..|+++....
T Consensus       297 ~g~l~Giit~~dil~~~~~  315 (334)
T 2qrd_G          297 NLKLEGILSLADILNYIIY  315 (334)
T ss_dssp             TCBEEEEEEHHHHHHHHHS
T ss_pred             CCeEEEEEeHHHHHHHHHh
Confidence            8999999999999875543

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.46  E-value=3.5e-08  Score=89.88  Aligned_cols=61  Identities=23%  Similarity=0.199  Sum_probs=55.5

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHH-HhhhcCcceecCCccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILV-EKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~-~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      .+.+|+|+|++++++.++.++++++|+.+.|. +++++.+||+|++++++|+|+.+|+.+..
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l  512 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRL  512 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTT
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHH
Confidence            66799999995449999999999999999999 79999999999889999999999998653

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.43  E-value=8.2e-08  Score=79.04  Aligned_cols=60  Identities=32%  Similarity=0.347  Sum_probs=54.5

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHh-----hhcCcceecCCccEEEEeeccceeee
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~-----~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+...+|+++|++  +++++.+++++.++++.|.++     +++.+||+|++|+++|+||.+|++..
T Consensus       133 ~~~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~  197 (286)
T 2oux_A          133 HYEDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVN  197 (286)
T ss_dssp             TSCTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTS
T ss_pred             cCChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcC
Confidence            3466799999999  999999999999999999998     78889999988999999999999864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.42  E-value=5.7e-08  Score=85.70  Aligned_cols=83  Identities=23%  Similarity=0.312  Sum_probs=66.2

Q ss_pred             ccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      .+++++..++..|.+....+...     ..+.+++++|++  ++.++.+++++++++++|.++++..+||+|++|+++|+
T Consensus       193 ~ipVvd~~~~lvGiVt~~Dll~~-----~~~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGi  265 (473)
T 2zy9_A          193 YIYVVDEKGRLKGVLSLRDLIVA-----DPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGI  265 (473)
T ss_dssp             EEEEECTTSBEEEEEEHHHHHHS-----CTTSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEE
T ss_pred             EEEEECCCCcEEEEEEHHHHhcC-----CCCCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEE
Confidence            34566655555555544433322     245699999998  89999999999999999999999999999988999999


Q ss_pred             eeccceeeee
Q 030753          132 VSDYDLLALD  141 (172)
Q Consensus       132 Vt~~Dll~~~  141 (172)
                      ||.+|+++..
T Consensus       266 IT~~Dil~~i  275 (473)
T 2zy9_A          266 VTVDDVLDVL  275 (473)
T ss_dssp             EEHHHHHHHH
T ss_pred             EehHhhHHHH
Confidence            9999998653

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.42  E-value=9.5e-08  Score=78.78  Aligned_cols=60  Identities=27%  Similarity=0.311  Sum_probs=54.6

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ...+|+|+|+++.+++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|++..
T Consensus        20 ~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~   80 (334)
T 2qrd_G           20 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   80 (334)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             hcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            347899999987678999999999999999999999999999976 899999999999864

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.42  E-value=2.2e-08  Score=89.02  Aligned_cols=91  Identities=21%  Similarity=0.256  Sum_probs=59.6

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +..+|+++..+...+.+....+..    ......+++++|+++++++++.+++++.+++++|.++++..+||+|++|+++
T Consensus       120 ~s~~PVvd~~~~lvGiVt~rDL~~----~~~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~G~l~  195 (496)
T 4fxs_A          120 FAGFPVVTENNELVGIITGRDVRF----VTDLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVNDEFQLK  195 (496)
T ss_dssp             CCEEEEECSSSBEEEEEEHHHHTT----CCCTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECTTSBCC
T ss_pred             CcEEEEEccCCEEEEEEEHHHHhh----cccCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEE
Confidence            456777776555555554444421    2335678999999544589999999999999999999999999999999999


Q ss_pred             EEeeccceeeeeccc
Q 030753          130 GLVSDYDLLALDSIS  144 (172)
Q Consensus       130 GIVt~~Dll~~~~~~  144 (172)
                      |+||.+|+++.....
T Consensus       196 GiIT~~DIl~~~~~p  210 (496)
T 4fxs_A          196 GMITAKDFHKAESKP  210 (496)
T ss_dssp             EEECCC-----CCCT
T ss_pred             EeehHhHHHHhhccc
Confidence            999999999765443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.41  E-value=4.4e-08  Score=87.74  Aligned_cols=76  Identities=25%  Similarity=0.311  Sum_probs=1.5

Q ss_pred             cCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC
Q 030753           68 SGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG  145 (172)
Q Consensus        68 ~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~  145 (172)
                      -|.+..+++.......+|+++|++  +++++.++.++++|.++|.++++..+||||++++++|+||.+|+.+...++.
T Consensus       185 vGIvT~RD~rf~d~~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~~p~  260 (556)
T 4af0_A          185 LGIVTGRDVQFQDAETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQNYPY  260 (556)
T ss_dssp             ---------------------------------------------------------------------------CTT
T ss_pred             EEEEecccccccccceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhhCCc
Confidence            355555555444467899999999  9999999999999999999999999999999999999999999998766554

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.35  E-value=2.3e-07  Score=81.86  Aligned_cols=85  Identities=26%  Similarity=0.250  Sum_probs=65.4

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHh-----hhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCC
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSM  153 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~-----~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m  153 (172)
                      .+...+++++|++  +++++.++++++++++.|.++     +++.+||+|++++++|+|+.+|++..   ..+....+.|
T Consensus       151 ~~~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~---~~~~~v~dim  225 (473)
T 2zy9_A          151 RYEEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA---DPRTRVAEIM  225 (473)
T ss_dssp             TSCTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS---CTTSBGGGTS
T ss_pred             cCCCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC---CCCCcHHHHh
Confidence            3456789999999  999999999999999999987     57899999988999999999999853   2334455555


Q ss_pred             CcC------ccchhhhhhhhc
Q 030753          154 FPE------VDSTWKVYIQRG  168 (172)
Q Consensus       154 ~~~------~~~l~~~l~~i~  168 (172)
                      .++      -.++.+.++.++
T Consensus       226 ~~~~~~v~~~~~l~ea~~~m~  246 (473)
T 2zy9_A          226 NPKVVYVRTDTDQEEVARLMA  246 (473)
T ss_dssp             BSSCCCEESSSBHHHHHHHHH
T ss_pred             CCCCeEEeCCCcHHHHHHHHH
Confidence            432      244555555544

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.34  E-value=1.8e-07  Score=77.12  Aligned_cols=60  Identities=22%  Similarity=0.330  Sum_probs=54.0

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ...+|+|+|+++.+++++.+++++.++++.|.+++++++||+|++ ++++|+|+.+|++..
T Consensus        33 ~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~   93 (330)
T 2v8q_E           33 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINI   93 (330)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHH
T ss_pred             HcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            456999999555599999999999999999999999999999977 789999999998854

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.31  E-value=1.1e-07  Score=84.87  Aligned_cols=89  Identities=22%  Similarity=0.285  Sum_probs=69.1

Q ss_pred             ecccchhhh--hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCcc
Q 030753           50 ATSSDRVSA--LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWK  127 (172)
Q Consensus        50 ~r~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~  127 (172)
                      +..+|+++.  .+...+.+....+..    ......+++++|++ ++++++.+++++.+++++|.++++..+||+|++|+
T Consensus       144 ~s~~pVvd~g~~~~lvGiVt~rDl~~----~~~~~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~  218 (511)
T 3usb_A          144 ISGVPVVNNLDERKLVGIITNRDMRF----IQDYSIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGV  218 (511)
T ss_dssp             CSEEEEESCTTTCBEEEEEEHHHHTT----CCCSSSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSB
T ss_pred             CcEEEEEecCCCCEEEEEEEehHhhh----hccCCCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCC
Confidence            345666665  444445544444422    23356789999996 47889999999999999999999999999999999


Q ss_pred             EEEEeeccceeeeecc
Q 030753          128 LVGLVSDYDLLALDSI  143 (172)
Q Consensus       128 lvGIVt~~Dll~~~~~  143 (172)
                      ++|+||.+|+++....
T Consensus       219 l~GiIT~~Dil~~~~~  234 (511)
T 3usb_A          219 LQGLITIKDIEKVIEF  234 (511)
T ss_dssp             EEEEEEHHHHHHHHHC
T ss_pred             EeeeccHHHHHHhhhc
Confidence            9999999999976554

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.31  E-value=5.5e-08  Score=85.84  Aligned_cols=90  Identities=26%  Similarity=0.370  Sum_probs=4.6

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      ...+|+++..+...+.++...+...    .....+++++|++.+++.++.+++++.+++++|.++++..+||+|++|+++
T Consensus       126 ~~~~pVvd~~~~lvGivt~~Dl~~~----~~~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lv  201 (494)
T 1vrd_A          126 IGGLPVVDEEGRLVGLLTNRDVRFE----KNLSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLV  201 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ceEEEEEcCCCEEEEEEEHHHHHhh----cCCCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEE
Confidence            3467778766666666655555431    124578999999655789999999999999999999999999999889999


Q ss_pred             EEeeccceeeeecc
Q 030753          130 GLVSDYDLLALDSI  143 (172)
Q Consensus       130 GIVt~~Dll~~~~~  143 (172)
                      |+||..|+++....
T Consensus       202 GiIt~~Dll~~~~~  215 (494)
T 1vrd_A          202 GLITIKDIMSVIEH  215 (494)
T ss_dssp             -------CHHHHTC
T ss_pred             EEEEHHHHHhhhcc
Confidence            99999999976543

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.30  E-value=2.6e-07  Score=75.83  Aligned_cols=59  Identities=25%  Similarity=0.485  Sum_probs=54.0

Q ss_pred             CeeEecce---eeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           81 GVYTVGDF---MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~di---M~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ...+++++   |++  ++.++.+++++.+++++|.+++++.+||+|++|+++|+||.+|+++..
T Consensus       185 ~~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~  246 (323)
T 3t4n_C          185 LKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI  246 (323)
T ss_dssp             CCSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHH
T ss_pred             hhCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHH
Confidence            44589999   888  899999999999999999999999999999889999999999998654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.23  E-value=1.8e-07  Score=83.10  Aligned_cols=94  Identities=20%  Similarity=0.196  Sum_probs=53.9

Q ss_pred             eecccchhhh---hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC
Q 030753           49 LATSSDRVSA---LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD  125 (172)
Q Consensus        49 ~~r~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~  125 (172)
                      .++.+|+++.   .++..+.+....+...  .......+++++|++.+++.++.+++++.+++++|.++++..+||+|++
T Consensus       138 ~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~--~~~~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~~  215 (514)
T 1jcn_A          138 GFSGIPITETGTMGSKLVGIVTSRDIDFL--AEKDHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVNDC  215 (514)
T ss_dssp             ---CEESCC--------CCEECTTTTC------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESSS
T ss_pred             CCCEEEEEeCCCcCCEEEEEEEHHHHHhh--hhccCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECCC
Confidence            3567788876   3555555544433221  1113567899999865578999999999999999999999999999988


Q ss_pred             ccEEEEeeccceeeeeccc
Q 030753          126 WKLVGLVSDYDLLALDSIS  144 (172)
Q Consensus       126 ~~lvGIVt~~Dll~~~~~~  144 (172)
                      |+++|+||.+|+++.....
T Consensus       216 g~lvGiIt~~Dll~~~~~~  234 (514)
T 1jcn_A          216 DELVAIIARTDLKKNRDYP  234 (514)
T ss_dssp             SCCC----CCCCSSCCCCT
T ss_pred             CeEEEEEEHHHHHHHhhCc
Confidence            9999999999999765543

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.21  E-value=4.3e-07  Score=74.01  Aligned_cols=53  Identities=15%  Similarity=0.045  Sum_probs=48.9

Q ss_pred             ceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        87 diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      .+|.+  .++++.+++++.++..+|...|+.++||++ +|+++||||++||+++..
T Consensus       193 ~~md~--sP~tv~~~tsL~~v~~LF~~lglr~l~V~~-~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          193 CRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             SCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             ccccC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEE-CCEEEEEEEHHHHHHHHH
Confidence            47999  999999999999999999999999999998 699999999999987543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.21  E-value=4.2e-07  Score=80.78  Aligned_cols=67  Identities=21%  Similarity=0.347  Sum_probs=54.3

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCC
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~  154 (172)
                      +++++|+.  +++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+...  ........+.|.
T Consensus        90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~--~~~~~~v~diM~  156 (496)
T 4fxs_A           90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV--TDLTKSVAAVMT  156 (496)
T ss_dssp             HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC--CCTTSBGGGTSE
T ss_pred             cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc--ccCCCcHHHHhc
Confidence            55778998  99999999999999999999999999999988999999999999732  122444555555

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.18  E-value=1.6e-07  Score=83.48  Aligned_cols=90  Identities=9%  Similarity=0.055  Sum_probs=70.6

Q ss_pred             ecccchhh-hhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--
Q 030753           50 ATSSDRVS-ALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--  125 (172)
Q Consensus        50 ~r~~~~~~-~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--  125 (172)
                      .+++|+++ ..+...+.++...++..... ......+|+++|++  +++++.+++++.+++++|.++++  +||+|++  
T Consensus       416 ~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~~~~~~~V~~im~~--~~~~v~~~~~l~~a~~~m~~~~~--~pVVd~~~~  491 (527)
T 3pc3_A          416 VDQLPVVDQDDGSVLGVVGQETLITQIVSMNRQQSDPAIKALNK--RVIRLNESEILGKLARVLEVDPS--VLILGKNPA  491 (527)
T ss_dssp             CSEEEEECTTTCCEEEEEEHHHHHHHHHHHCCCTTSBGGGGEET--TCCEEETTSBHHHHHHHHTTCSE--EEEEEECSS
T ss_pred             CCeEEEEECCCCEEEEEEEHHHHHHHHHhccCcCCCcHHHHhcC--CCeEECCCCcHHHHHHHHhhCCE--EEEEeCCcc
Confidence            35678887 56677777777766543221 23356789999999  99999999999999999988776  6999974  


Q ss_pred             --ccEEEEeeccceeeeecc
Q 030753          126 --WKLVGLVSDYDLLALDSI  143 (172)
Q Consensus       126 --~~lvGIVt~~Dll~~~~~  143 (172)
                        |+++||||..||++....
T Consensus       492 ~~g~lvGIVT~~Dll~~l~~  511 (527)
T 3pc3_A          492 GKVELKALATKLDVTTFIAA  511 (527)
T ss_dssp             SCEEEEEEEEHHHHHHHHHT
T ss_pred             cCCeEEEEEEHHHHHHHHHh
Confidence              899999999999976544

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.09  E-value=8.2e-07  Score=79.16  Aligned_cols=53  Identities=25%  Similarity=0.471  Sum_probs=48.3

Q ss_pred             ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC--CccEEEEeeccceee
Q 030753           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLA  139 (172)
Q Consensus        85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~--~~~lvGIVt~~Dll~  139 (172)
                      .+++|.+  +++++.+++++.+++++|.+++++.+||+|+  +++++|+||.+|+..
T Consensus       115 ~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~  169 (511)
T 3usb_A          115 SESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF  169 (511)
T ss_dssp             SSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT
T ss_pred             ccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh
Confidence            4566777  8999999999999999999999999999998  789999999999974

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.09  E-value=4.3e-07  Score=80.23  Aligned_cols=84  Identities=32%  Similarity=0.447  Sum_probs=0.5

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +..+|+++. +...+.+     ..+++.. ....+++++|++  ++.++.+++++.+++++|.++++..+||+|++|+++
T Consensus       124 ~~~~pVvd~-~~lvGiv-----t~~Dl~~-~~~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lv  194 (486)
T 2cu0_A          124 IDGLPVVED-EKVVGII-----TKKDIAA-REGKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDERGKLV  194 (486)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEEEEC-CEEEEEE-----EHHHhcc-CCCCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEE
Confidence            345666654 3333333     3333322 256789999998  899999999999999999999999999999889999


Q ss_pred             EEeeccceeeeec
Q 030753          130 GLVSDYDLLALDS  142 (172)
Q Consensus       130 GIVt~~Dll~~~~  142 (172)
                      |+||.+|+++...
T Consensus       195 GiiT~~Dil~~~~  207 (486)
T 2cu0_A          195 GLITMSDLVARKK  207 (486)
T ss_dssp             ------------C
T ss_pred             EEEEHHHHHHhhh
Confidence            9999999997654

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.07  E-value=4.1e-07  Score=80.23  Aligned_cols=68  Identities=29%  Similarity=0.483  Sum_probs=1.1

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +++++|++  +++++.+++++.+++++|.+++++.+||+|++++++|+||.+|+....  .....+.++|.+
T Consensus        96 ~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~--~~~~~v~~im~~  163 (494)
T 1vrd_A           96 KTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK--NLSKKIKDLMTP  163 (494)
T ss_dssp             TC----------------------------------------------------------------------
T ss_pred             hHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc--CCCCcHHHHhCC
Confidence            46889998  999999999999999999999999999999889999999999998531  223455555654

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.02  E-value=3.2e-06  Score=74.35  Aligned_cols=68  Identities=22%  Similarity=0.408  Sum_probs=57.6

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec--CCccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd--~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      .++++|++  ++.++.+++++.+++++|.+++++.+||+|  ++++++|+||.+|++...  .......++|.+
T Consensus        91 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~--~~~~~v~~im~~  160 (491)
T 1zfj_A           91 RSENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS--DYNAPISEHMTS  160 (491)
T ss_dssp             HHTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS--CSSSBTTTSCCC
T ss_pred             hHHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc--cCCCcHHHHcCC
Confidence            45889999  999999999999999999999999999999  789999999999998542  234556666664

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.02  E-value=7e-07  Score=79.30  Aligned_cols=69  Identities=23%  Similarity=0.204  Sum_probs=2.3

Q ss_pred             Eecce-eeccceeeeecccccHHHHHHHHHHhhhcCcceecCC---ccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD---WKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~di-M~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~---~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +..++ |++  +++++.+++++.+++++|.+++++.+||+|++   ++++|+||.+|++.. .......+.+.|.+
T Consensus        97 ~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~-~~~~~~~V~diM~~  169 (503)
T 1me8_A           97 KNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID-LTQTETKVSDMMTP  169 (503)
T ss_dssp             HTTTC-----------------------------------------------------------------------
T ss_pred             hhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh-hccccCcHHHHhCC
Confidence            33455 998  99999999999999999999999999999976   899999999999853 22224455566654

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.99  E-value=7.3e-07  Score=79.13  Aligned_cols=70  Identities=26%  Similarity=0.378  Sum_probs=29.2

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +++++|.+  +++++.+++++.+++++|.+++++.+||+|+   +++++|+||.+|+.............+.|.+
T Consensus       109 ~~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~~~~~~~v~~vm~~  181 (514)
T 1jcn_A          109 NFEQGFIT--DPVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAEKDHTTLLSEVMTP  181 (514)
T ss_dssp             TCCTTSCS--SCCCCCC-----------------CEESCC--------CCEECTTTTC----------------C
T ss_pred             hhhhcccc--CCEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhhccCCCCHHHHhCC
Confidence            56789998  8999999999999999999999999999997   4899999999999864211223445555554

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.95  E-value=2.3e-06  Score=75.26  Aligned_cols=86  Identities=23%  Similarity=0.294  Sum_probs=64.7

Q ss_pred             ccchhh--hhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           52 SSDRVS--ALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        52 ~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      .+|+++  ..+...+.+....+...    .....+++++|++. ++.++.+++++.+++++|.++++..+||+|++|+++
T Consensus       123 ~~pVvd~~~~~~lvGivt~~Dl~~~----~~~~~~v~~im~~~-~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lv  197 (491)
T 1zfj_A          123 GVPIVETLANRKLVGIITNRDMRFI----SDYNAPISEHMTSE-HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLS  197 (491)
T ss_dssp             EEEEESCTTTCBEEEEEEHHHHHHC----SCSSSBTTTSCCCS-CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEE
T ss_pred             EEEEEEeCCCCEEEEEEEHHHHhhh----ccCCCcHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEE
Confidence            445555  34444444444443321    12456899999852 578899999999999999999999999999889999


Q ss_pred             EEeeccceeeeec
Q 030753          130 GLVSDYDLLALDS  142 (172)
Q Consensus       130 GIVt~~Dll~~~~  142 (172)
                      |++|..|+++...
T Consensus       198 Givt~~Dil~~~~  210 (491)
T 1zfj_A          198 GLITIKDIEKVIE  210 (491)
T ss_dssp             EEEEHHHHHHHHH
T ss_pred             EEEEHHHHHHHHh
Confidence            9999999987554

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.89  E-value=1.7e-06  Score=76.65  Aligned_cols=67  Identities=25%  Similarity=0.361  Sum_probs=3.4

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCC
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMF  154 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~  154 (172)
                      .+++++|..  +++++.+++++.+++++|.+++++.+||+| +++++||||.+|+....  .....+.++|.
T Consensus        88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~--~~~~~V~~vMt  154 (490)
T 4avf_A           88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKP--NAGDTVAAIMT  154 (490)
T ss_dssp             HHCCC-------------------------------------------------------------------
T ss_pred             cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhcc--ccCCcHHHHhc
Confidence            357889998  999999999999999999999999999999 89999999999996322  22445555665

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.89  E-value=1.7e-06  Score=77.48  Aligned_cols=66  Identities=27%  Similarity=0.381  Sum_probs=0.4

Q ss_pred             ceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeeecccCCCCCCCCCCcCc
Q 030753           87 DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALDSISGSGRADNSMFPEV  157 (172)
Q Consensus        87 diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~~  157 (172)
                      ..|..  +|+++.|+.++.+++++|.+++++.+||+|+   +++++||||.+|+.-.   ....++.++|++++
T Consensus       142 ~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~---d~~~~V~evMT~~l  210 (556)
T 4af0_A          142 NGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ---DAETPIKSVMTTEV  210 (556)
T ss_dssp             C-------------------------------------------------------------------------
T ss_pred             cCccC--CCeEcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc---ccceEhhhhcccce
Confidence            45666  8999999999999999999999999999986   4799999999998642   33567777787654

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.59  E-value=9.4e-06  Score=71.60  Aligned_cols=52  Identities=31%  Similarity=0.571  Sum_probs=1.1

Q ss_pred             ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ++++|+.  +++++.+++++.+++++|.+++++.+||+|+ ++++|+|+.+|++.
T Consensus        95 ~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~  146 (486)
T 2cu0_A           95 AERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA  146 (486)
T ss_dssp             CC-----------------------------------------------------
T ss_pred             hhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc
Confidence            4678988  9999999999999999999999999999997 99999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	1e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-08
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	3e-05
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	5e-08
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	3e-05
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	1e-07
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	3e-04
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-07
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	1e-06
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	2e-07
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	9e-05
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-07
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	9e-06
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	3e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	4e-07
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	5e-05
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	8e-07
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-06
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-06
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	3e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	1e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	0.002
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-06
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-05
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	2e-06
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	3e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	7e-06
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	6e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	1e-05
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	0.001
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	1e-05
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	0.002
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	1e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	2e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	2e-05
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	1e-04
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-05
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	6e-04
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	2e-05
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	3e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	4e-05
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	0.004
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	5e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	0.002
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	7e-05
d1zfja4	126	d.37.1.1 (A:95-220) Type II inosine monophosphate	1e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	4e-04
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	5e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	5e-04
d2yvxa2	144	d.37.1.1 (A:132-275) Magnesium transporter MgtE {T	0.001

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 48.6 bits (115), Expect = 1e-08
 Identities = 16/63 (25%), Positives = 31/63 (49%)

Query: 76  AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
                    + + MT +E+L V     T+ EA EIL   +    P+++++ +LV +++  
Sbjct: 54  LKEEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIART 113

Query: 136 DLL 138
           DL 
Sbjct: 114 DLK 116

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.9 bits (113), Expect = 3e-08
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 83  YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                       +       T++  +  LVE  +    V+D+   + G+VS  D+L
Sbjct: 84  LQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDIL 137

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 84  TVGDFM-TTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS 142
           ++ +    T   + +V+ TT V  AL I V+ R++  PV+D+  ++V + S +D++ L +
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 143 ISGSGRADNSM 153
                  D S+
Sbjct: 70  EKTYNNLDVSV 80

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 47.6 bits (112), Expect = 5e-08
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D MT     H +  T T+++A  ++    I   P++D + KL+G+VS  DLL
Sbjct: 3   KVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLL 55

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 39.5 bits (91), Expect = 3e-05
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V P   + E+   + + +I   PV+  D  LVG+++D D +
Sbjct: 86  TSVAPQAGLKESAIYMQKHKIGCLPVVAKD-VLVGIITDSDFV 127

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.4 bits (109), Expect = 1e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           T  D M     +  V    T+  A + + E  I   P+  DD +L G+++D D+
Sbjct: 2   TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDI 53

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 36.4 bits (83), Expect = 3e-04
 Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + V    ++ E L ++ E ++   PVI +  +LVG+V++ D+ 
Sbjct: 78  YYVDANASIQEMLNVMEEHQVRRVPVISEH-RLVGIVTEADIA 119

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 15/57 (26%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 83  YTVGDF-MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             +GD  + T++ +   + TT V + +++L + R++  P+ID++  L+ +   YD+L
Sbjct: 6   IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVL 62

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 10/43 (23%), Positives = 23/43 (53%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           +       +   ++ + + R+  F V+DD  +LVG+++  D+L
Sbjct: 92  YTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDIL 134

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.6 bits (107), Expect = 2e-07
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI 143
            +  +MT   +L  VKP+T+V EA  +++E  +    VI+DD  +VG  +  D++    +
Sbjct: 6   PIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 144 SGSGRADNSMFPEVDSTWKVYIQRGAEVA 172
            G             +     +       
Sbjct: 64  PGLPYDIPVERIMTRNLITANVNTPLGEV 92

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 38.2 bits (88), Expect = 9e-05
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                 T + E L  + E RI    + ++  K+VG+ +  DLL
Sbjct: 81  ITANVNTPLGEVLRKMAEHRIKHILIEEEG-KIVGIFTLSDLL 122

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 45.1 bits (106), Expect = 2e-07
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 84  TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TV   +  K   +  + P  +V  A++ +    I    V+ D+   VG++++ D  
Sbjct: 3   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFS 57

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 40.9 bits (95), Expect = 9e-06
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V    T ++ + ++ E R+   PV+DD  K++GL+S  DL+
Sbjct: 81  AYVDLNNTNEDCMALITEMRVRHLPVLDDG-KVIGLLSIGDLV 122

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.4 bits (106), Expect = 3e-07
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           TVG FM   +++  V+    ++ AL +L +   T  PV+D  ++L GL+    ++
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIM 57

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.4 bits (106), Expect = 4e-07
 Identities = 13/55 (23%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              + M    +   V   T ++EAL+++++  I   PV+D+  ++VG ++  ++L
Sbjct: 85  NASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEIL 136

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           V  V   ++ K    VV+  T ++E ++ ++E  +T    +  D KLVG++    LL
Sbjct: 3   VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLL 57

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 44.2 bits (103), Expect = 8e-07
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYD 136
            +  +      + +V   T +  AL+ L+       PV+D +  LVG+V + D
Sbjct: 5   EIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETD 55

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V + MT      V  P  TV E    + +  I   PVI  +  L+GL+ D+DLL
Sbjct: 100 PVAEIMTRDV--IVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLL 152

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFP-VIDDDWKLVGLVSDYDLL 138
              D + T  +L V   +  V +A   LV   +   P         VG+++  D +
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 69

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.5 bits (99), Expect = 3e-06
 Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 51  TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEI 110
           T +D ++ L R                  +                 + P  ++ +A+  
Sbjct: 64  TITDFINILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPL--VCISPNASLFDAVSS 121

Query: 111 LVEKRITGFPVIDDDW-KLVGLVSDYDLL 138
           L+  +I   PVID +    + +++   +L
Sbjct: 122 LIRNKIHRLPVIDPESGNTLYILTHKRIL 150

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 2/49 (4%)

Query: 82  VYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG 130
           ++ V  FM+T  ++  +     +D+A+++++ +     PVIDDD K+VG
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVG 47

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            V D M T      +    +V+ A   ++ KRI    +++ D  + G++++ DLL
Sbjct: 74  VVKDVMVTNL--VTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLL 126

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.0 bits (100), Expect = 2e-06
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDY 135
            V   M +      V   TTV +A++I+ E  + G  V DD+   VGL+S+ 
Sbjct: 4   RVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSER 53

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 100 PTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               V +    L E  +    V+DD  ++VG+V+  DL 
Sbjct: 84  SDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLS 122

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.6 bits (99), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           F         V     +  AL + +E +    PV+D++ +L G VS +D L
Sbjct: 63  FNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFL 113

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.2 bits (98), Expect = 3e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSD 134
           V  ++T   +  +V+ + TV E L  + + +     V D +    G+V+ 
Sbjct: 3   VKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNK 50

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.0 bits (95), Expect = 7e-06
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL 128
           V D M T  ++  +  T ++++ L   VE       V+ +  ++
Sbjct: 2   VEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRV 43

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 38.7 bits (89), Expect = 6e-05
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             + P  T+ EA E +V+  +    V +DD +++G++S  D+L
Sbjct: 75  VTISPRATIKEAAEKMVKNVVWRLLVEEDD-EIIGVISATDIL 116

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + D +     +  V      ++  + + +      PV D D  L+G+V+  D++
Sbjct: 67  IADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDII 118

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 34.8 bits (79), Expect = 0.001
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYD 136
           T G  MTT  E   +    TV  A+ +L  +      I    V+D +  LVG++S  D
Sbjct: 2   TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRD 57

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 41.1 bits (95), Expect = 1e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%)

Query: 88  FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
                + +H  + T  +D   + +   R+    V+D++ KL G++S  D+L
Sbjct: 79  RPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADIL 129

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 85  VGDFMT-TKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDL 137
           +      T   L      T V + +++L EK I+  P+++ +  L+ +    D+
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDV 56

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 84  TVGDFMTTKEELHVV----KPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDL 137
              D M  +    ++    + + TV++   I+ E   +GFPV+   +  +LVG V   DL
Sbjct: 4   LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 63

Query: 138 L 138
           +
Sbjct: 64  I 64

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 8/55 (14%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
            + + +        V   T ++  ++I  +  +    V  +  +L+G+++  D+L
Sbjct: 101 KLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHNG-RLLGIITKKDVL 152

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.3 bits (93), Expect = 2e-05
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 95  LHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + VVK   T+ +A ++++E       V+D   K VG+++  D++
Sbjct: 70  VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDII 113

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 85  VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           V   MT       +    T + ALE+  + ++  FPV++ + 
Sbjct: 3   VKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEG 42

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL 140
            + D+MT       V  T+    A+ I+V +     PV+D + K VG+V++ + L L
Sbjct: 75  PIIDYMTPNP--VTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLL 129

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 36.1 bits (82), Expect = 6e-04
 Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 2/41 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
            +   M       ++     +  A + + E  I    V ++
Sbjct: 2   NIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVANE 40

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 9/43 (20%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
            V ++M T  ++  V     +++  +++ EK I    V+D + 
Sbjct: 5   IVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNK 45

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 36.8 bits (84), Expect = 3e-04
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 109 EILVEKRITGFPVIDDDWKLVGLVSDYDLL-ALDSI 143
            ++ +  I   PV+DD   L G++S  D+  A+D +
Sbjct: 91  ALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDDM 126

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 40.0 bits (92), Expect = 4e-05
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 5/55 (9%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-----WKLVGLVSDYDLL 138
                E   V P  ++ +A   + + R    P+ID D       +V +++ Y +L
Sbjct: 111 GAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 34.2 bits (77), Expect = 0.004
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW 126
           T  D + T   L V   T  V  +L +L    I   P+ D + 
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA 63

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 39.2 bits (90), Expect = 5e-05
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 89  MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
               +    +   T++ +   +     +    V     KLVG+V+  ++ 
Sbjct: 107 CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMG-KLVGVVALAEIQ 155

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD 124
            VGD M    ++  +  T+T  + L +L + ++  FP +D 
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDT 50

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 38.3 bits (88), Expect = 7e-05
 Identities = 15/77 (19%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 97  VVKPTTTVDEALEILVEKRITGFPVIDDDW--KLVGLVSDYDLLALDSISGSGRADNSMF 154
            + P   V EA E++   RI+G P+++     KLVG++++ D+  +   +       +  
Sbjct: 9   FLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYNAPISEHMTSE 68

Query: 155 PEVDSTWKVYIQRGAEV 171
             V +     ++    +
Sbjct: 69  HLVTAAVGTDLETAERI 85

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} Length = 126

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 99  KPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
              T ++ A  IL E RI   P++D+  +L GL++  D+ 
Sbjct: 74  AVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIE 113

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 96  HVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
             V  T  V  A E +    I    V++ + +LVG++S  DL 
Sbjct: 77  ITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLC 119

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 36.1 bits (82), Expect = 5e-04
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID--DDWKLVG 130
              + +        +  T T+ E    L + R+    +    +  + V 
Sbjct: 2   RTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVA 48

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 36.3 bits (83), Expect = 5e-04
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 84  TVGDFMTTKEELHVVKPTTTVDEALEILVEK-----RITGFPVIDDDWKLVGLVSDYD 136
             G  MT   E   V+   TV+E L  L         I    V+D+  +L G++S  D
Sbjct: 2   EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRD 57

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} Length = 144

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 87  DFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLL 138
           + M  K     V+  T  +E   ++ +   T  PV+D++ +LVG+V+  D+L
Sbjct: 69  EIMNPKV--VYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.12
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.09
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.08
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.07
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.03
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.01
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.01
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.0
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.0
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.99
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.99
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.98
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.98
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.97
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.97
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.96
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.95
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.94
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.94
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.93
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.91
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.9
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.89
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.87
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.85
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.84
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.81
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.8
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.78
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.78
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.76
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.73
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.72
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.68
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.67
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.66
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.66
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.65
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.64
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.6
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.55
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.55
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.54
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.53
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.53
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.52
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.49
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.49
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.46
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.44
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.32
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.17
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	90.33

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.12  E-value=3.7e-12  Score=91.71  Aligned_cols=82  Identities=15%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV  132 (172)
                      .++++..+...+.+     ..+.+.......+++++|++  ++.++.+++++.+++++|.++++..+||+|++|+++|+|
T Consensus        40 ~~Vvd~~~~l~G~v-----~~~~l~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiI  112 (127)
T d2ouxa2          40 VYVVDQENHLVGVI-----SLRDLIVNDDDTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIV  112 (127)
T ss_dssp             EEEECTTCBEEEEE-----EHHHHTTSCTTSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEE
T ss_pred             eEEEecCCeEEEEE-----EeeccccccccEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEE
Confidence            34566665554444     33333333456789999999  999999999999999999999999999999889999999


Q ss_pred             eccceeeee
Q 030753          133 SDYDLLALD  141 (172)
Q Consensus       133 t~~Dll~~~  141 (172)
                      |.+|++.+.
T Consensus       113 t~~Dil~~i  121 (127)
T d2ouxa2         113 TVDDIIDVI  121 (127)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHHHH
Confidence            999998643

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.09  E-value=8.5e-12  Score=91.20  Aligned_cols=89  Identities=16%  Similarity=0.137  Sum_probs=74.2

Q ss_pred             cccchhhhhccCceeeecCceeccCC--CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++++++..+...|.++.+.+..+..  .......+++++|++  ++.++.+++++.+++++|.++++.++||+|++|++
T Consensus        35 ~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~l  112 (142)
T d1pvma4          35 YGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRK--PIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRV  112 (142)
T ss_dssp             CEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBS--SCCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCE
T ss_pred             ceEeeeccCCcccceEEeechhhhhhhhccccccccccccccc--ccccccchhhHHHHHHHHHHcCCcEEEEEecCCEE
Confidence            46677777777778877777655443  223456789999999  99999999999999999999999999999988999


Q ss_pred             EEEeeccceeeee
Q 030753          129 VGLVSDYDLLALD  141 (172)
Q Consensus       129 vGIVt~~Dll~~~  141 (172)
                      +|+||..||+++.
T Consensus       113 ~Giit~~Dil~~l  125 (142)
T d1pvma4         113 VGIVTLTDLSRYL  125 (142)
T ss_dssp             EEEEEHHHHTTTS
T ss_pred             EEEEEHHHHHHHH
Confidence            9999999998743

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.08  E-value=4.1e-12  Score=90.56  Aligned_cols=55  Identities=27%  Similarity=0.437  Sum_probs=51.8

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      +++|+|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|++|.+|++..
T Consensus         2 t~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~   56 (123)
T d1y5ha3           2 TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIK   56 (123)
T ss_dssp             CHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHT
T ss_pred             CHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhh
Confidence            68999999  99999999999999999999999999999988999999999998754

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=3.1e-11  Score=86.97  Aligned_cols=73  Identities=26%  Similarity=0.364  Sum_probs=61.4

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc---CCCCCCCCCCcCc
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS---GSGRADNSMFPEV  157 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~---~~~~~~~~m~~~~  157 (172)
                      .+|+++|++  +++++.+++++.++++.|.+++++.+||+|++|+++|++|.+|+++.....   ...+...+|.+.+
T Consensus         5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~~~   80 (132)
T d2yzia1           5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTRNL   80 (132)
T ss_dssp             SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBCSC
T ss_pred             CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecccccc
Confidence            489999999  999999999999999999999999999999889999999999998643322   2445666665543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.03  E-value=4.4e-11  Score=87.71  Aligned_cols=59  Identities=32%  Similarity=0.498  Sum_probs=54.8

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ....+++++|++  ++.++.+++++.++++.|.++++.++||+|++|+++||||.+||+++
T Consensus        96 ~~~~~v~~~m~~--~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          96 LPNKPVAEIMTR--DVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             -CCCBGGGTCBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             ccCCEeehhccc--CceEECcccccHHHHHHHHHcCeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            456789999999  99999999999999999999999999999988999999999999875

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.01  E-value=1.9e-11  Score=87.07  Aligned_cols=87  Identities=18%  Similarity=0.337  Sum_probs=72.3

Q ss_pred             cccchhhhhccCceeeecCceeccCCC--CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      ++.|+++..+...|.++.+.+..+.+.  ......+++++|++  ++.++.+++++.+++++|.+++++++||+| +|++
T Consensus        33 ~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd-~~~l  109 (123)
T d1y5ha3          33 GALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARD--SIYYVDANASIQEMLNVMEEHQVRRVPVIS-EHRL  109 (123)
T ss_dssp             SEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTT--CCCCEETTCCHHHHHHHHHHHTCSEEEEEE-TTEE
T ss_pred             CceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeec--cceeeeecchHHHHHHHHHHcCceEEEEEE-CCEE
Confidence            456778777788888877776554442  23456688999999  999999999999999999999999999998 5899


Q ss_pred             EEEeeccceeee
Q 030753          129 VGLVSDYDLLAL  140 (172)
Q Consensus       129 vGIVt~~Dll~~  140 (172)
                      +|+||..||++.
T Consensus       110 vGiit~~Dil~~  121 (123)
T d1y5ha3         110 VGIVTEADIARH  121 (123)
T ss_dssp             EEEEEHHHHHHT
T ss_pred             EEEEEHHHHHhh
Confidence            999999999863

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.01  E-value=3e-11  Score=86.89  Aligned_cols=60  Identities=27%  Similarity=0.445  Sum_probs=55.4

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      .+|+++|++.+++.++.+++++++|+++|.+++++++||+|++|+++|+++.+|+++...
T Consensus         2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~   61 (132)
T d1yava3           2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIF   61 (132)
T ss_dssp             CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHB
T ss_pred             CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhh
Confidence            478999998889999999999999999999999999999998899999999999986543

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.00  E-value=7.6e-11  Score=85.97  Aligned_cols=73  Identities=25%  Similarity=0.257  Sum_probs=60.5

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC----CCCCCCCCCcCc
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEV  157 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~----~~~~~~~m~~~~  157 (172)
                      ++|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++.....+    .......|..++
T Consensus         3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~   79 (142)
T d1pvma4           3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   79 (142)
T ss_dssp             CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccc
Confidence            579999999  9999999999999999999999999999998899999999999975433221    344566665543

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=7e-11  Score=86.58  Aligned_cols=58  Identities=26%  Similarity=0.373  Sum_probs=54.3

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+++|+++|.+  +++++.+++++.+|+++|.+++++++||+|++|+++|++|..|++..
T Consensus         2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~   59 (156)
T d2yzqa1           2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRD   59 (156)
T ss_dssp             GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGC
T ss_pred             CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhh
Confidence            46789999999  99999999999999999999999999999988999999999998643

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=5.9e-11  Score=84.46  Aligned_cols=57  Identities=28%  Similarity=0.421  Sum_probs=38.9

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++|+++|++  +++++.+++++.+|+++|.+++++.+||+|++|+++|+|+.+|++...
T Consensus         1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~   57 (122)
T d2yzqa2           1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNP   57 (122)
T ss_dssp             CBHHHHSEE--SCCCEESSCC------------CCEEEEECTTCCEEEEEESSCC----
T ss_pred             CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhh
Confidence            368999999  999999999999999999999999999999889999999999998643

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.99  E-value=2.6e-11  Score=86.71  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=70.3

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      .++|+++. ++..|.++.+.+...-........+++++|.+  ++.++.+++++.++++.|.+++++++||+|++|+++|
T Consensus        36 ~~~pV~d~-~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvG  112 (127)
T d2ef7a1          36 GSVIVVDG-NKPVGIITERDIVKAIGKGKSLETKAEEFMTA--SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKG  112 (127)
T ss_dssp             SEEEEEET-TEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEE--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEE
T ss_pred             ceEEeecc-cchhhhcchhHHHHHHHhhccccchhhhhhhh--hccccccccchhHHHHHHHHcCceEEEEEeCCCeEEE
Confidence            35566653 44556666666654433344456789999999  9999999999999999999999999999998899999


Q ss_pred             Eeeccceeeee
Q 030753          131 LVSDYDLLALD  141 (172)
Q Consensus       131 IVt~~Dll~~~  141 (172)
                      +||..|+++..
T Consensus       113 iit~~Dll~~i  123 (127)
T d2ef7a1         113 IISIRDITRAI  123 (127)
T ss_dssp             EEEHHHHHHHH
T ss_pred             EEEHHHHHHHH
Confidence            99999998654

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.98  E-value=2.3e-10  Score=81.11  Aligned_cols=56  Identities=27%  Similarity=0.376  Sum_probs=52.8

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ++|+++|++  ++.++.+++++.+|+++|.+++.+.+||+|++|+++|+++.+|+.+.
T Consensus         1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~   56 (121)
T d1vr9a3           1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL   56 (121)
T ss_dssp             CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTS
T ss_pred             CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhh
Confidence            368999999  99999999999999999999999999999988999999999999864

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.98  E-value=4.4e-11  Score=87.67  Aligned_cols=82  Identities=23%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             cchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEe
Q 030753           53 SDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLV  132 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIV  132 (172)
                      .++++..++..+.+....+..     .....++.++|++  ++.++.+++++.+|+++|.++++..+||||++|+++|+|
T Consensus        40 ~~Vvd~~~~l~G~v~~~dl~~-----~~~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiI  112 (144)
T d2yvxa2          40 IYVVDEKGRLKGVLSLRDLIV-----ADPRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIV  112 (144)
T ss_dssp             CEEBCTTCBBCCBCBHHHHTT-----SCTTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEE
T ss_pred             eEEecCCCCEecccchhhhhh-----cccccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEE
Confidence            355666666666664444432     3355689999999  999999999999999999999999999999889999999


Q ss_pred             eccceeeee
Q 030753          133 SDYDLLALD  141 (172)
Q Consensus       133 t~~Dll~~~  141 (172)
                      |.+|++++.
T Consensus       113 t~~Dil~~l  121 (144)
T d2yvxa2         113 TVDDVLDVL  121 (144)
T ss_dssp             EHHHHHHHH
T ss_pred             EHHHHHHHH
Confidence            999998653

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.97  E-value=4.9e-11  Score=85.90  Aligned_cols=90  Identities=20%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             ecccchhhhhccCceeeecCceeccCCC-CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAA-PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      ++++++++..+...|.++.+.+..+... ......+++++|.+  ++.++.+++++.++++.|.++++.++||++ +|++
T Consensus        36 ~~~~~Vvd~~~~~~Giit~~di~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~-~~~~  112 (132)
T d2yzia1          36 VGSLVVINDDGNVVGFFTKSDIIRRVIVPGLPYDIPVERIMTR--NLITANVNTPLGEVLRKMAEHRIKHILIEE-EGKI  112 (132)
T ss_dssp             CSEEEEECTTSCEEEEEEHHHHHHHTTTTCCCTTSBGGGTCBC--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEE
T ss_pred             CcEEEEecccceeeeeeeHHHHHHHHhhccCccceeEeecccc--cccccCcchHHHHHHHHHHHcCCCEEEEEE-CCEE
Confidence            4577888888888888888877655542 33456799999999  999999999999999999999999999876 6899


Q ss_pred             EEEeeccceeeeec
Q 030753          129 VGLVSDYDLLALDS  142 (172)
Q Consensus       129 vGIVt~~Dll~~~~  142 (172)
                      +|+||.+|++++..
T Consensus       113 vGivt~~Dil~a~~  126 (132)
T d2yzia1         113 VGIFTLSDLLEASR  126 (132)
T ss_dssp             EEEEEHHHHHHHHH
T ss_pred             EEEEEHHHHHHHHH
Confidence            99999999987543

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.97  E-value=1.2e-10  Score=82.82  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=64.1

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +..+|+++..+...|.++...+..     .....+++++|.+  ++.++.+++++.+++++|.++++..+||+|++|+++
T Consensus        32 ~~~~~Vvd~~~~~~G~it~~dl~~-----~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~li  104 (122)
T d2yzqa2          32 VRSFPVVNKEGKLVGIISVKRILV-----NPDEEQLAMLVKR--DVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPV  104 (122)
T ss_dssp             CCEEEEECTTCCEEEEEESSCC---------------CCCBS--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEE
T ss_pred             CcEEEEEeccccchhhhhcchhhh-----hhcccchhhcccc--ceeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEE
Confidence            345677777777777765555543     3355689999999  999999999999999999999999999999889999


Q ss_pred             EEeeccceeee
Q 030753          130 GLVSDYDLLAL  140 (172)
Q Consensus       130 GIVt~~Dll~~  140 (172)
                      |+||.+|+++.
T Consensus       105 Giit~~dil~~  115 (122)
T d2yzqa2         105 GILTVGDIIRR  115 (122)
T ss_dssp             EEEEHHHHHHH
T ss_pred             EEEEHHHHHHH
Confidence            99999999864

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.96  E-value=6e-11  Score=84.37  Aligned_cols=88  Identities=20%  Similarity=0.250  Sum_probs=47.9

Q ss_pred             ecccchhhh---hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCc
Q 030753           50 ATSSDRVSA---LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW  126 (172)
Q Consensus        50 ~r~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~  126 (172)
                      ..++|+++.   .+...|.++...+....  ....+.++.++|+.+.+++++.+++++.+|+++|.+++++++||+|++|
T Consensus        27 i~~~pVvd~~~~~~~lvGivT~~Di~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~  104 (120)
T d1jr1a4          27 FCGIPITDTGRMGSRLVGIISSRDIDFLK--EEEHDRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEND  104 (120)
T ss_dssp             -----------CTTCCC------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTT
T ss_pred             CCeEEEeeccccCCeEeeeeeeeeeeehh--ccccCceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCC
Confidence            346788864   44556777666653222  2334567777777655789999999999999999999999999999889


Q ss_pred             cEEEEeeccceee
Q 030753          127 KLVGLVSDYDLLA  139 (172)
Q Consensus       127 ~lvGIVt~~Dll~  139 (172)
                      +++|+||..|+++
T Consensus       105 ~lvGiiT~~Di~k  117 (120)
T d1jr1a4         105 ELVAIIARTDLKK  117 (120)
T ss_dssp             EEEEEECHHHHHH
T ss_pred             EEEEEEEHHHhhh
Confidence            9999999999975

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.95  E-value=1.1e-10  Score=83.60  Aligned_cols=60  Identities=28%  Similarity=0.391  Sum_probs=55.5

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ...+++++|+.  ++.++.+++++.+++++|.+++++++||+|++|+++|+||.+|++++..
T Consensus        72 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          72 STTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             HTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             ccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            35689999999  9999999999999999999999999999998999999999999987543

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=1.2e-10  Score=82.61  Aligned_cols=85  Identities=19%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             cccchhhhhccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEE
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVG  130 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvG  130 (172)
                      +++++++..+...|.+..+.+...     ....++.++|+.  ++.++++++++.+++++|.++++..+||+|++|+++|
T Consensus        33 ~~v~Vvd~~~~~~Gii~~~dl~~~-----~~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~G  105 (121)
T d1vr9a3          33 NECIVKDREGHFRGVVNKEDLLDL-----DLDSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKG  105 (121)
T ss_dssp             SEEEEECTTSBEEEEEEGGGGTTS-----CTTSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEE
T ss_pred             EEEEEEeCCceeEEEeehhhhhhh-----hccccccccccC--ccEEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEE
Confidence            456777777777777766666533     234589999999  9999999999999999999999999999999999999


Q ss_pred             Eeeccceeeeec
Q 030753          131 LVSDYDLLALDS  142 (172)
Q Consensus       131 IVt~~Dll~~~~  142 (172)
                      +||..|++++..
T Consensus       106 vit~~dil~~l~  117 (121)
T d1vr9a3         106 AVSLHDFLEALI  117 (121)
T ss_dssp             EEEHHHHHHHHH
T ss_pred             EEEHHHHHHHHH
Confidence            999999986543

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.94  E-value=1.5e-10  Score=83.81  Aligned_cols=57  Identities=35%  Similarity=0.518  Sum_probs=53.3

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++|+|+|++  ++.++.+++++.+|++.|.+++++.+||+|++|+++|++|.+|+++..
T Consensus         2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~   58 (139)
T d2o16a3           2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQ   58 (139)
T ss_dssp             CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHH
Confidence            478999999  999999999999999999999999999999889999999999998543

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.93  E-value=1.8e-10  Score=82.19  Aligned_cols=84  Identities=18%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeeccc--CCCCCCCCCCcC--
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSIS--GSGRADNSMFPE--  156 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~--~~~~~~~~m~~~--  156 (172)
                      ++..|+++|++  +++++.+++++.+++++|.+++++.+||+| +|+++|+++.+|+++.....  ........|..+  
T Consensus         2 ~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~~~~~v~~~~~~~~~   78 (127)
T d2ef7a1           2 EEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKSLETKAEEFMTASLI   78 (127)
T ss_dssp             CCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCCTTCBGGGTSEECCC
T ss_pred             CccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhccccchhhhhhhhhcc
Confidence            45689999999  999999999999999999999999999998 57899999999998654322  234445555433  


Q ss_pred             ----ccchhhhhhhh
Q 030753          157 ----VDSTWKVYIQR  167 (172)
Q Consensus       157 ----~~~l~~~l~~i  167 (172)
                          -.++++.++.+
T Consensus        79 ~v~~~~~l~~~~~~m   93 (127)
T d2ef7a1          79 TIREDSPITGALALM   93 (127)
T ss_dssp             CEETTSBHHHHHHHH
T ss_pred             ccccccchhHHHHHH
Confidence                34555555554

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.91  E-value=1.3e-10  Score=82.90  Aligned_cols=88  Identities=19%  Similarity=0.244  Sum_probs=67.3

Q ss_pred             cccchhhh--hccCceeeecCceeccCCCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccE
Q 030753           51 TSSDRVSA--LRRSSAVFASGTLTANSAAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKL  128 (172)
Q Consensus        51 r~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~l  128 (172)
                      +++|+++.  .+...|.++...+.....   ........+|..  +++++.+++++.+++++|.+++++++||+|++|++
T Consensus        29 ~~~pVvD~~~~~~lvGivt~~Di~~~~~---~~~~~~~~~~~~--~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~~g~l  103 (126)
T d1zfja4          29 SGVPIVETLANRKLVGIITNRDMRFISD---YNAPISEHMTSE--HLVTAAVGTDLETAERILHEHRIEKLPLVDNSGRL  103 (126)
T ss_dssp             SEEEEESCTTTCBEEEEEEHHHHHHCSC---SSSBTTTSCCCS--CCCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBE
T ss_pred             CcEEEEeeccCCeEEEEeEHHHHHHhhc---cCCceeeeeecc--ceeecCCCCCHHHHHHHHHhcCCcEEEEEcCCCeE
Confidence            46677764  455667777766654333   122233445565  78899999999999999999999999999988999


Q ss_pred             EEEeeccceeeeecc
Q 030753          129 VGLVSDYDLLALDSI  143 (172)
Q Consensus       129 vGIVt~~Dll~~~~~  143 (172)
                      +|+||.+|++++...
T Consensus       104 vGiiT~~Dil~~~~~  118 (126)
T d1zfja4         104 SGLITIKDIEKVIEF  118 (126)
T ss_dssp             EEEEEHHHHHHHHHC
T ss_pred             EEEEEHHHHHHHhhC
Confidence            999999999986544

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.90  E-value=1e-10  Score=83.62  Aligned_cols=85  Identities=21%  Similarity=0.293  Sum_probs=67.8

Q ss_pred             ccchhhhhccCceeeecCceeccCC--CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEE
Q 030753           52 SSDRVSALRRSSAVFASGTLTANSA--APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLV  129 (172)
Q Consensus        52 ~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lv  129 (172)
                      +.|+++ .....|.++.+.+.....  .......+++++|++  ++.++.+++++.+++++|.+++++++||+| +|+++
T Consensus        38 ~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~  113 (127)
T d2rc3a1          38 ALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVI  113 (127)
T ss_dssp             EEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEE
T ss_pred             EEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeeccc--eeEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEE
Confidence            345554 455667776766644322  233456799999999  999999999999999999999999999998 68999


Q ss_pred             EEeeccceeee
Q 030753          130 GLVSDYDLLAL  140 (172)
Q Consensus       130 GIVt~~Dll~~  140 (172)
                      |+||.+|+++.
T Consensus       114 GiIt~~Dil~~  124 (127)
T d2rc3a1         114 GLLSIGDLVKD  124 (127)
T ss_dssp             EEEEHHHHHHH
T ss_pred             EEEEHHHHHHH
Confidence            99999999864

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.89  E-value=1.6e-10  Score=83.74  Aligned_cols=88  Identities=19%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             cccchhhhhccCceeeecCceeccC---------CCCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcce
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANS---------AAPSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV  121 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~---------~~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPV  121 (172)
                      +.+|+++..+...|.++.+.+....         ........+++++|++  ++.++.+++++.+++++|.+++++++||
T Consensus        34 ~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpV  111 (139)
T d2o16a3          34 RHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFEVMHT--DVTSVAPQAGLKESAIYMQKHKIGCLPV  111 (139)
T ss_dssp             SEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHHHSCS--CEEEBCTTSBHHHHHHHHHHTTCSCEEE
T ss_pred             CeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhHhhcc--ccccccccchHHHHHHHHHHcCceEEEE
Confidence            4567777777666666655543111         1123355789999999  9999999999999999999999999999


Q ss_pred             ecCCccEEEEeeccceeeee
Q 030753          122 IDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus       122 vd~~~~lvGIVt~~Dll~~~  141 (172)
                      +| +|+++|+||.+|++++.
T Consensus       112 vd-~~~lvGiit~~Dil~~~  130 (139)
T d2o16a3         112 VA-KDVLVGIITDSDFVTIA  130 (139)
T ss_dssp             EE-TTEEEEEECHHHHHHHH
T ss_pred             EE-CCEEEEEEEHHHHHHHH
Confidence            99 58999999999998653

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.87  E-value=1e-10  Score=82.91  Aligned_cols=83  Identities=18%  Similarity=0.184  Sum_probs=63.0

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC---CCCCCCCCCcC----
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG---SGRADNSMFPE----  156 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~---~~~~~~~m~~~----  156 (172)
                      +|+|+|++  ++.++.+++++.++++.|.+++++.+||++ +|+++|++|.+||++......   .....+.|..+    
T Consensus         1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v   77 (120)
T d1pbja3           1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI   77 (120)
T ss_dssp             CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred             ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccccccceeEeeecccccccc
Confidence            47899999  999999999999999999999999999997 589999999999986543322   33444444332    


Q ss_pred             --ccchhhhhhhhcc
Q 030753          157 --VDSTWKVYIQRGA  169 (172)
Q Consensus       157 --~~~l~~~l~~i~~  169 (172)
                        -.++++.++.+++
T Consensus        78 ~~~~~l~~a~~~m~~   92 (120)
T d1pbja3          78 SPRATIKEAAEKMVK   92 (120)
T ss_dssp             CTTSCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHH
Confidence              2455556555543

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.85  E-value=7.4e-10  Score=78.91  Aligned_cols=52  Identities=27%  Similarity=0.570  Sum_probs=46.6

Q ss_pred             eeccceeeeecccccHHHHHHHHHHhhhcCcceecC--CccEEEEeeccceeeeec
Q 030753           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD--DWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        89 M~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~--~~~lvGIVt~~Dll~~~~  142 (172)
                      |..  +|+++.+++++.+|+++|.+++++.+||+|+  +++++|+||.+|+.....
T Consensus         3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~   56 (126)
T d1zfja4           3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISD   56 (126)
T ss_dssp             TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSC
T ss_pred             CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhc
Confidence            556  7899999999999999999999999999986  588999999999986543

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.84  E-value=4.5e-10  Score=80.17  Aligned_cols=73  Identities=22%  Similarity=0.344  Sum_probs=57.4

Q ss_pred             Eecceeecc-ceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecccC----CCCCCCCCCcCc
Q 030753           84 TVGDFMTTK-EELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSISG----SGRADNSMFPEV  157 (172)
Q Consensus        84 ~V~diM~~~-~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~----~~~~~~~m~~~~  157 (172)
                      +|+|+|+.+ .+++++.+++++.+|+++|.+++++.+||++ +|+++|++|.+|+++.....+    ......+|..++
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~   80 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQV   80 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeecccee
Confidence            688999853 2688999999999999999999999999998 689999999999975432221    345555555543

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.81  E-value=1.8e-10  Score=81.61  Aligned_cols=84  Identities=21%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             cchhhhhccCceeeecCceeccCC-CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEE
Q 030753           53 SDRVSALRRSSAVFASGTLTANSA-APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGL  131 (172)
Q Consensus        53 ~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGI  131 (172)
                      +++.. .++..|.++...+...-. .......+++++|++  ++.++++++++.+++++|.++++.++||++ +|+++|+
T Consensus        34 ~~V~~-~~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~-~~~l~Gi  109 (120)
T d1pbja3          34 SVVVK-EGVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMER--DLVTISPRATIKEAAEKMVKNVVWRLLVEE-DDEIIGV  109 (120)
T ss_dssp             EEEEE-TTEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBC--GGGEECTTSCHHHHHHHHHHHTCSEEEEEE-TTEEEEE
T ss_pred             EEEEe-CCcEEEEEEeeeccccccccccccceeEeeeccc--ccccccchhHHHHHHHHHHHcCCeEEEEEE-CCEEEEE
Confidence            34443 345555555555543222 234567799999999  999999999999999999999999999987 6899999


Q ss_pred             eeccceeee
Q 030753          132 VSDYDLLAL  140 (172)
Q Consensus       132 Vt~~Dll~~  140 (172)
                      +|..|++++
T Consensus       110 vt~~Dil~A  118 (120)
T d1pbja3         110 ISATDILRA  118 (120)
T ss_dssp             EEHHHHHHH
T ss_pred             EEHHHHHhc
Confidence            999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.80  E-value=5.8e-10  Score=79.48  Aligned_cols=57  Identities=19%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCccee--cCCccEEEEeeccceeeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVv--d~~~~lvGIVt~~Dll~~~  141 (172)
                      ++|+|+|++  +++++.+++++.+++++|.+++++++||+  |++++++|+++..|+.+..
T Consensus         1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~   59 (131)
T d2riha1           1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV   59 (131)
T ss_dssp             CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHH
T ss_pred             CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeecccccc
Confidence            378999999  99999999999999999999999999999  4458899999999998653

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=1.2e-09  Score=79.13  Aligned_cols=91  Identities=15%  Similarity=0.119  Sum_probs=69.7

Q ss_pred             cccchhhhhccCceeeecCceeccCCCC--CCCee------EecceeeccceeeeecccccHHHHHHHHHHhhhcCccee
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAAP--SSGVY------TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVI  122 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~------~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVv  122 (172)
                      +++|+++..+...|.++...+.......  .....      .+...|..  ++.++.+++++.+++++|.++++.++||+
T Consensus        44 ~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~l~Vv  121 (145)
T d2v8qe1          44 SALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFE--GVLKCYLHETLEAIINRLVEAEVHRLVVV  121 (145)
T ss_dssp             SEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCSCCC--SCCEECTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred             CcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhhccC--CCeEECCCCcHHHHHHHHHHcCceEEEEE
Confidence            4667777777777777777765444321  11222      33445666  88899999999999999999999999999


Q ss_pred             cCCccEEEEeeccceeeeecc
Q 030753          123 DDDWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus       123 d~~~~lvGIVt~~Dll~~~~~  143 (172)
                      |++|+++|+||..||+++...
T Consensus       122 d~~g~l~GiVt~~dii~~lv~  142 (145)
T d2v8qe1         122 DEHDVVKGIVSLSDILQALVL  142 (145)
T ss_dssp             CTTSBEEEEEEHHHHHHHHHS
T ss_pred             ccCCEEEEEEEHHHHHHHHHh
Confidence            988999999999999976554

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.78  E-value=6.6e-10  Score=79.92  Aligned_cols=89  Identities=18%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             cccchhhhhccCceeeecCceeccCC-------CCCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSA-------APSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID  123 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd  123 (172)
                      +.+|+++..+...+.++.+.+.....       .......+++++|++  +++++.+++++.+++++|.++++.++||+|
T Consensus        34 ~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd  111 (141)
T d3ddja1          34 RRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMVT--NLVTIDELASVNRAAAEMIVKRIGSLLILN  111 (141)
T ss_dssp             SEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSBC--CCCBCCTTSBHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeeecccccCccccccccccchhhhhccccccccccccCCCHHHHhCc--ccccccccchhhHHHHHHHHcCCCEEEEEc
Confidence            34555665555555554443321110       011245689999999  999999999999999999999999999999


Q ss_pred             CCccEEEEeeccceeeee
Q 030753          124 DDWKLVGLVSDYDLLALD  141 (172)
Q Consensus       124 ~~~~lvGIVt~~Dll~~~  141 (172)
                      ++|+++|+||.+|+++..
T Consensus       112 ~~~~~iGiIt~~Dil~~l  129 (141)
T d3ddja1         112 KDNTIRGIITERDLLIAL  129 (141)
T ss_dssp             TTSCEEEEEEHHHHHHHH
T ss_pred             cCCEEEEEEEHHHHHHHH
Confidence            889999999999998643

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.76  E-value=2.8e-10  Score=81.57  Aligned_cols=87  Identities=11%  Similarity=0.146  Sum_probs=67.8

Q ss_pred             ecccchhhhhccCceeeecCceeccCCC------CCCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceec
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAA------PSSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVID  123 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd  123 (172)
                      ++++|+++..+...|.+....+...-..      ......+++++|++  ++.++.+++++.+++++|.++++  +||+|
T Consensus        35 ~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~--l~Vvd  110 (132)
T d1yava3          35 YTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT--DIPRLHINDPIMKGFGMVINNGF--VCVEN  110 (132)
T ss_dssp             CSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC--SCCEEETTSBHHHHHHHTTTCSE--EEEEC
T ss_pred             CCceEEeecccccccEEEcchhHHHhhccccccccccccccccccccc--cccccccchhHHHHHHHHHhCCE--EEEEc
Confidence            4566777766666666655555433221      23456789999999  99999999999999999988764  99999


Q ss_pred             CCccEEEEeeccceeee
Q 030753          124 DDWKLVGLVSDYDLLAL  140 (172)
Q Consensus       124 ~~~~lvGIVt~~Dll~~  140 (172)
                      ++|+++|+||.+|+++.
T Consensus       111 ~~~~~~Givt~~dil~~  127 (132)
T d1yava3         111 DEQVFEGIFTRRVVLKE  127 (132)
T ss_dssp             TTCBEEEEEEHHHHHHH
T ss_pred             cCCEEEEEEEHHHHHHH
Confidence            88999999999999864

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3e-09  Score=78.98  Aligned_cols=62  Identities=13%  Similarity=0.220  Sum_probs=55.8

Q ss_pred             CCCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753           79 SSGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus        79 ~~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~  143 (172)
                      .....+++++|.+  ++.++.+++++.+++++|.+++...+||+| +|+++|+||++|++++...
T Consensus        96 ~~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          96 TPPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            4557889999999  999999999999999999999999999987 6899999999999976544

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.72  E-value=1.2e-09  Score=78.45  Aligned_cols=56  Identities=29%  Similarity=0.567  Sum_probs=52.7

Q ss_pred             eEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           83 YTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        83 ~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+|+++|++  +++++.+++++.+|+++|.+++++++||+|++++++|+++..|+.+.
T Consensus         2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~   57 (141)
T d3ddja1           2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQ   57 (141)
T ss_dssp             CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhh
Confidence            478999999  99999999999999999999999999999988999999999998754

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.68  E-value=1.4e-09  Score=79.78  Aligned_cols=93  Identities=19%  Similarity=0.252  Sum_probs=69.0

Q ss_pred             cccchhhhhccCceeeecCceeccCCC--CCCCeeEecceeecc----ceeeeecccccHHHHHHHHHHhhhcCcceecC
Q 030753           51 TSSDRVSALRRSSAVFASGTLTANSAA--PSSGVYTVGDFMTTK----EELHVVKPTTTVDEALEILVEKRITGFPVIDD  124 (172)
Q Consensus        51 r~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~V~diM~~~----~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~  124 (172)
                      .+.|+++..+...|.+..+.+......  ......++.++|..+    .++.++.+++++.++++.|.++++.++||+|+
T Consensus        36 ~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~  115 (153)
T d2ooxe2          36 SAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE  115 (153)
T ss_dssp             SEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT
T ss_pred             ceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC
Confidence            456777777666777766665443321  112344666666431    15678999999999999999999999999998


Q ss_pred             CccEEEEeeccceeeeecc
Q 030753          125 DWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus       125 ~~~lvGIVt~~Dll~~~~~  143 (172)
                      +|+++|+||.+|++++...
T Consensus       116 ~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2         116 NLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             TCBEEEEEEHHHHHHHHHS
T ss_pred             CCEEEEEEEHHHHHHHHHc
Confidence            8999999999999976543

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.67  E-value=3.1e-09  Score=77.23  Aligned_cols=57  Identities=16%  Similarity=0.025  Sum_probs=51.7

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ....+.++|.+  .+.++.+++++.+++++|.++++.++||+| +|+++||||.+||+++
T Consensus       101 ~~~~~~~~~~~--~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~  157 (160)
T d2d4za3         101 VVNFETCRIDQ--SPFQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAA  157 (160)
T ss_dssp             BCCTTSSCEEC--CSCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             ccceeeecccC--CCEEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHH
Confidence            34456789999  999999999999999999999999999998 6899999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=3.7e-09  Score=76.18  Aligned_cols=55  Identities=25%  Similarity=0.408  Sum_probs=50.9

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      .+.++|+.  +++++.+++++.++++.|.+++++.+||+|++|+++|+||.+|+.+.
T Consensus         5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~   59 (145)
T d1o50a3           5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKV   59 (145)
T ss_dssp             HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHH
T ss_pred             EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhh
Confidence            45678999  99999999999999999999999999999988999999999998754

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.66  E-value=2.5e-09  Score=78.05  Aligned_cols=67  Identities=33%  Similarity=0.414  Sum_probs=55.3

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhh-----hcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCc
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFP  155 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~-----i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~  155 (172)
                      +++++|++  +++++.+++++.+|+++|++++     +..+||+|++|+++|+++.+|+....   .......+|..
T Consensus         2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~---~~~~v~~im~~   73 (144)
T d2yvxa2           2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD---PRTRVAEIMNP   73 (144)
T ss_dssp             SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC---TTCBSTTTSBS
T ss_pred             CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc---cccchHHhccc
Confidence            57899999  9999999999999999998774     77899999999999999999987542   23444445544

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.65  E-value=4.8e-09  Score=76.19  Aligned_cols=59  Identities=24%  Similarity=0.420  Sum_probs=53.7

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC--ccEEEEeeccceeee
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD--WKLVGLVSDYDLLAL  140 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~--~~lvGIVt~~Dll~~  140 (172)
                      ..+++|+|+|++  +++++.+++++.+++++|.+++++.+||+|++  +.++|+++..|++..
T Consensus         8 ~~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~   68 (160)
T d2d4za3           8 KYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGL   68 (160)
T ss_dssp             CSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             ccceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHH
Confidence            357899999999  99999999999999999999999999999843  689999999998754

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.64  E-value=8.8e-10  Score=78.15  Aligned_cols=51  Identities=27%  Similarity=0.473  Sum_probs=17.4

Q ss_pred             eeccceeeeecccccHHHHHHHHHHhhhcCcceecC---CccEEEEeeccceeeee
Q 030753           89 MTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD---DWKLVGLVSDYDLLALD  141 (172)
Q Consensus        89 M~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~---~~~lvGIVt~~Dll~~~  141 (172)
                      |..  +|+++.+++++.+|+++|.+++++++||+|+   +++++|+||.+|+....
T Consensus         2 m~~--~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~   55 (120)
T d1jr1a4           2 FIT--DPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLK   55 (120)
T ss_dssp             EEC--TTCC----CCCC--CCBC---------------CTTCCC------------
T ss_pred             ccc--CCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehh
Confidence            566  7899999999999999999999999999985   57999999999986443

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=6.7e-09  Score=75.88  Aligned_cols=61  Identities=21%  Similarity=0.303  Sum_probs=54.0

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC-CccEEEEeeccceeeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALD  141 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~-~~~lvGIVt~~Dll~~~  141 (172)
                      ...++.|+|....++++++.++++.+|++.|.+++++++||+|+ +++++|+++..|++...
T Consensus        11 ~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~   72 (159)
T d2v8qe2          11 KSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINIL   72 (159)
T ss_dssp             HHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHH
T ss_pred             cCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHH
Confidence            45689999987668899999999999999999999999999975 58899999999987543

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.55  E-value=1.2e-08  Score=72.74  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=49.6

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +|+++|++  ++.++.+++++.+|++.|.+++++++||+|+  +++|+++..|+.+..
T Consensus         2 ~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~--~lvg~~~~~~~~~~~   55 (135)
T d3ddja2           2 NIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE--KIEGLLTTRDLLSTV   55 (135)
T ss_dssp             SGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS--SEEEEEEHHHHHGGG
T ss_pred             EeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec--ceeceeeccchhhhh
Confidence            68999999  9999999999999999999999999999974  799999999987543

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.55  E-value=9.1e-09  Score=74.05  Aligned_cols=60  Identities=22%  Similarity=0.360  Sum_probs=52.3

Q ss_pred             CCeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeec
Q 030753           80 SGVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDS  142 (172)
Q Consensus        80 ~~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~  142 (172)
                      ....+++++|.   +++++.+++++.+|+++|.+++++++||+|++|+++|+||..|+++...
T Consensus        81 ~~~~~~~~~~~---~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~~g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3          81 LIAKNASEIML---DPVYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALW  140 (145)
T ss_dssp             CSSCBHHHHCB---CCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             ccccCHHHHcC---CCEEEcCCCCHHHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHH
Confidence            45566788774   4688999999999999999999999999998899999999999987543

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.54  E-value=1.4e-08  Score=71.98  Aligned_cols=54  Identities=24%  Similarity=0.167  Sum_probs=48.1

Q ss_pred             ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeee
Q 030753           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~  140 (172)
                      ....|..  ++.++.+++++.+++++|.+++++.+||+|++|+++|+||..||++.
T Consensus        68 ~~~~~~~--~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          68 PAMPIAN--SPITVLDTDPVHVAAEKMRRHNIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             BSGGGCB--CCCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ccccccc--cceeEeeecchHHHHHHHHHCCeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence            3445556  67889999999999999999999999999989999999999999864

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=6.5e-09  Score=74.85  Aligned_cols=90  Identities=13%  Similarity=0.096  Sum_probs=61.8

Q ss_pred             ecccchhhhhccCceeeecCceeccCCCC--CCCeeE------ecceeeccceeeeecccccHHHHHHHHHHhhhcCcce
Q 030753           50 ATSSDRVSALRRSSAVFASGTLTANSAAP--SSGVYT------VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPV  121 (172)
Q Consensus        50 ~r~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~------V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPV  121 (172)
                      .++.|+++..+...|.++...+...-...  ......      ....|..  ++.++.+++++.+++++|.++++.++||
T Consensus        40 ~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~V  117 (140)
T d2nyca1          40 VSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFE--GVYTCTKNDKLSTIMDNIRKARVHRFFV  117 (140)
T ss_dssp             CSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC--------CEECTTSBHHHHHHHHHHHTCSEEEE
T ss_pred             CcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhhhccc--ccEEECCCCcHHHHHHHHHhcCeeEEEE
Confidence            34667777777667777666554432211  111112      2334455  7788999999999999999999999999


Q ss_pred             ecCCccEEEEeeccceeeee
Q 030753          122 IDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus       122 vd~~~~lvGIVt~~Dll~~~  141 (172)
                      +|++|+++|+||.+|++++.
T Consensus       118 Vd~~~~l~GiIt~~Dii~~l  137 (140)
T d2nyca1         118 VDDVGRLVGVLTLSDILKYI  137 (140)
T ss_dssp             ECTTSBEEEEEEHHHHHHHH
T ss_pred             EeCCCeEEEEEEHHHHHHHH
Confidence            99899999999999998653

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.53  E-value=1.9e-08  Score=71.67  Aligned_cols=68  Identities=29%  Similarity=0.350  Sum_probs=55.6

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhh-----hcCcceecCCccEEEEeeccceeeeecccCCCCCCCCCCcC
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKR-----ITGFPVIDDDWKLVGLVSDYDLLALDSISGSGRADNSMFPE  156 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~-----i~~lPVvd~~~~lvGIVt~~Dll~~~~~~~~~~~~~~m~~~  156 (172)
                      +++.+|++  +++++.+++++.+|++.|++++     ++.+||+|++|+++|+++.+++....   ....+.++|.++
T Consensus         2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~---~~~~v~~im~~~   74 (127)
T d2ouxa2           2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND---DDTLIADILNER   74 (127)
T ss_dssp             BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC---TTSBHHHHSBSC
T ss_pred             ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc---ccEEhhhhccCC
Confidence            57889999  9999999999999999999874     67899999999999999999987532   234445555543

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.52  E-value=1.3e-08  Score=75.66  Aligned_cols=60  Identities=27%  Similarity=0.311  Sum_probs=53.4

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCC-ccEEEEeeccceeee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDD-WKLVGLVSDYDLLAL  140 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~-~~lvGIVt~~Dll~~  140 (172)
                      ...++.|+|.+..+++++++++++.+|++.|.+++++++||+|++ ++++|++|..|+++.
T Consensus        18 ~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~   78 (179)
T d2ooxe1          18 RSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNV   78 (179)
T ss_dssp             HHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHH
T ss_pred             cCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHH
Confidence            345789999865589999999999999999999999999999854 899999999999754

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=2.2e-08  Score=72.18  Aligned_cols=61  Identities=26%  Similarity=0.495  Sum_probs=50.9

Q ss_pred             eEecceeec-cceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeeecc
Q 030753           83 YTVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALDSI  143 (172)
Q Consensus        83 ~~V~diM~~-~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~~~  143 (172)
                      .++++++.. .++++++.+++++.+|+++|.+++++.+||+|++|+++|++|..|+++....
T Consensus         9 ~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~   70 (145)
T d2v8qe1           9 KSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAE   70 (145)
T ss_dssp             SBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGS
T ss_pred             CCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhc
Confidence            356665432 1278999999999999999999999999999988999999999999865543

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.49  E-value=2.4e-08  Score=71.74  Aligned_cols=52  Identities=25%  Similarity=0.494  Sum_probs=47.6

Q ss_pred             eeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           88 FMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        88 iM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      +|..  ++.++.+++++.+|++.|.+++++++||+|++|+++|++|..|+.+..
T Consensus        14 ~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~   65 (140)
T d2nyca1          14 ITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI   65 (140)
T ss_dssp             CBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHH
T ss_pred             ccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHH
Confidence            4556  899999999999999999999999999999889999999999998654

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.46  E-value=2e-08  Score=73.30  Aligned_cols=58  Identities=19%  Similarity=0.354  Sum_probs=50.0

Q ss_pred             Eecceeec-cceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceeeee
Q 030753           84 TVGDFMTT-KEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLALD  141 (172)
Q Consensus        84 ~V~diM~~-~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~~~  141 (172)
                      ++++++.. .++++++.+++++.+|+++|.+++++.+||+|++|+++|+++.+|+.+..
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~   60 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLI   60 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHH
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehh
Confidence            55666542 23799999999999999999999999999999889999999999998553

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=2.9e-08  Score=72.38  Aligned_cols=56  Identities=18%  Similarity=0.251  Sum_probs=50.1

Q ss_pred             EecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecC-CccEEEEeeccceeeee
Q 030753           84 TVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDD-DWKLVGLVSDYDLLALD  141 (172)
Q Consensus        84 ~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~-~~~lvGIVt~~Dll~~~  141 (172)
                      .+.++|.+  +++++.+++++.+++++|.++++.++||+|+ +|+++||||.+||+++.
T Consensus        97 ~~~~~~~~--~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l  153 (159)
T d2v8qe2          97 VYLQDSFK--PLVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFL  153 (159)
T ss_dssp             HHSSSSCC--CCCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHH
T ss_pred             eeeeeecc--ceEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHH
Confidence            44578888  8999999999999999999999999999985 58999999999998754

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=7e-08  Score=71.35  Aligned_cols=58  Identities=29%  Similarity=0.490  Sum_probs=47.2

Q ss_pred             eEecceeeccce--e--eeecccccHHHHHHHHHHhhhcCccee--cCCccEEEEeeccceeee
Q 030753           83 YTVGDFMTTKEE--L--HVVKPTTTVDEALEILVEKRITGFPVI--DDDWKLVGLVSDYDLLAL  140 (172)
Q Consensus        83 ~~V~diM~~~~~--~--~~v~~~~sl~eal~~m~~~~i~~lPVv--d~~~~lvGIVt~~Dll~~  140 (172)
                      ..++|+|.+++.  +  +.+.++++++++.++|.+++++++||+  +++++++|++|.+||+..
T Consensus         3 ~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~   66 (169)
T d2j9la1           3 TLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIIS   66 (169)
T ss_dssp             CBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             cchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHH
Confidence            467899987532  2  335678899999999999999999999  445789999999999854

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.17  E-value=2.4e-07  Score=68.54  Aligned_cols=56  Identities=23%  Similarity=0.314  Sum_probs=49.3

Q ss_pred             ecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCc-----cEEEEeeccceeeeec
Q 030753           85 VGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDW-----KLVGLVSDYDLLALDS  142 (172)
Q Consensus        85 V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~-----~lvGIVt~~Dll~~~~  142 (172)
                      +.++|.+  +++++.+++++.+++++|.++++.++||+|++|     +++||+|.+||++...
T Consensus       109 ~~~~~~~--~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         109 KIGAIPP--ETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             HTTCSCS--SCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             eeeeccc--CceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            4556888  899999999999999999999999999998543     6999999999998654

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=90.33  E-value=0.0028  Score=47.14  Aligned_cols=57  Identities=12%  Similarity=0.105  Sum_probs=50.9

Q ss_pred             CeeEecceeeccceeeeecccccHHHHHHHHHHhhhcCcceecCCccEEEEeeccceee
Q 030753           81 GVYTVGDFMTTKEELHVVKPTTTVDEALEILVEKRITGFPVIDDDWKLVGLVSDYDLLA  139 (172)
Q Consensus        81 ~~~~V~diM~~~~~~~~v~~~~sl~eal~~m~~~~i~~lPVvd~~~~lvGIVt~~Dll~  139 (172)
                      ....+.++|..  .+.++..+++-+++.+++.+......||++++++++|.|+.+|+..
T Consensus       135 ~~~~l~~i~~~--~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~e~~~~G~I~~~Die~  191 (213)
T d1lkvx_         135 IQLVLREVDTR--DLALALKGASDELKEKIFKNMSKRAAALLKDELEYMGPVRLKDVEE  191 (213)
T ss_dssp             HHHHHTTSCHH--HHHHHHTTCCHHHHHHHHTTSCHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             HhHHHHHhhhh--hheeehhcCCHHHHHHHHHhCCHHHHHHHHHhhhhcCCCcHHHHHH
Confidence            44567889888  8888999999999999999999999999998899999999999743