Citrus Sinensis ID: 030785

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQESTISII
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccHcccccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MSNMTTLEEESSILEFIRQFLLgdftslddpnlsflqpmesefpviksepdsptfceiikpeplditclgssnwtespqkssegvrrrpwgkyaaeirdparkgsrvwlgtfdsdvDAAKAYDSAAFRMRGRKAIlnfpleagadsppaknsrkrRREKTLDLQESTISII
Flexible Loop (DISEMBL)
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLgssnwtespqkssegvrrrpwgkyaaeirdparkgsrvwlGTFDSDVDAAKAYDSAAFRMRGRKAILnfpleagadsppaknsrkrrrektldlqestisii
Low Complexity Region (SEG)
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQESTISII
Disordered region (IsUnstruct)
************ILEFIRQFLLGDFTSLDDPNLSFL*****************TFCEIIKPEPLDITCLG********************GKYAAEI*****KGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF*********************************
Disordered Region (DISOPRED)
****TTL*EESSILEFIRQFLLGDFTSLDDPN*******************************************************RPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPL*******************************
Disordered Region (DISEMBL)
**********SSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSN**************RPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA*******************QESTISII
Disordered Region (DISPRO)
***********SILEFIRQFLLGDFTS**************************************************PQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGAD**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREKTLDLQESTISII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9LY05	207	Ethylene-responsive trans	yes	no	0.871	0.719	0.447	9e-30
Q8VY90	221	Ethylene-responsive trans	no	no	0.812	0.628	0.452	3e-27
O80341	300	Ethylene-responsive trans	no	no	0.485	0.276	0.626	1e-25
Q9FKG1	241	Ethylene-responsive trans	no	no	0.789	0.560	0.434	2e-24
Q40478	291	Ethylene-responsive trans	N/A	no	0.467	0.274	0.620	2e-24
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.502	0.304	0.563	5e-24
Q9FKG2	201	Ethylene-responsive trans	no	no	0.865	0.736	0.446	9e-24
Q8VZ91	282	Ethylene-responsive trans	no	no	0.467	0.283	0.583	1e-22
O80338	243	Ethylene-responsive trans	no	no	0.619	0.436	0.474	3e-22
Q40476	236	Ethylene-responsive trans	N/A	no	0.426	0.309	0.648	4e-22

>sp|Q9LY05|EF106_ARATH Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1

 Score =  129 bits (324), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/181 (44%), Positives = 103/181 (56%), Gaps = 32/181 (17%)

Query: 9   EESSILEFIRQFLLGDFTSLD------DPNLSFLQPMESEFPVI-KSEPDSPTF------ 55
           EESS LE I+  LL D    D      D + SF+  +    P + K EPDSP        
Sbjct: 5   EESSDLEAIQSHLLEDLLVCDGFMGDFDFDASFVSGLWCIEPHVPKQEPDSPVLDPDSFV 64

Query: 56  CEIIKPE------------------PLDITCLGSSNWTESPQ-KSSEGVRRRPWGKYAAE 96
            E ++ E                    D +   +  + E    +   GVRRRPWGK+AAE
Sbjct: 65  NEFLQVEGESSSSSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAE 124

Query: 97  IRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRR 156
           IRDPA+KGSR+WLGTF+SDVDAA+AYD AAF++RGRKA+LNFPL+AG    PA + RKR+
Sbjct: 125 IRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAGKYEAPANSGRKRK 184

Query: 157 R 157
           R
Sbjct: 185 R 185

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 86/157 (54%), Gaps = 18/157 (11%)

Query: 12  SILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPEPLDITCLGS 71
           S L+ I Q LL DF SLD    +      S     K     P    I  P    +     
Sbjct: 14  SALDLITQHLLTDFPSLDTFASTIHHCTTSTLSQRK-----PPLATIAVPTTAPVV---- 64

Query: 72  SNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 131
               E+ Q+   GVRRRPWGKYAAEIRDP +KG RVWLGTFD+ ++AA+ YD AAF++RG
Sbjct: 65  ---QENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRG 121

Query: 132 RKAILNFPLEAGADSPPAKNSR------KRRREKTLD 162
            KAILNFPLEAG       N +      KR+R+ T D
Sbjct: 122 SKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTED 158

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query: 75  TESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKA 134
           +E  +K   GVR+RPWGK+AAEIRDP ++GSRVWLGTFD+ ++AA+AYD AAFR+RG KA
Sbjct: 149 SEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKA 208

Query: 135 ILNFPLEAGADSPPAKNSRKRRR 157
           ILNFPLE G   P A    K+R+
Sbjct: 209 ILNFPLEVGKWKPRADEGEKKRK 231

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 10/145 (6%)

Query: 8   EEESSILEFIRQFLLGDFTSL--DDPNL--SFLQPMESEF---PVIKSEPDSPTFCEIIK 60
           ++E+  ++FI Q LL DF S+  D P+L  + L    SE     +    P   +     K
Sbjct: 4   KQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTLNQRK 63

Query: 61  PEPLDITC---LGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVD 117
           P   +++    + +    E  ++   GVRRRPWGKYAAEIRDP +KG R+WLGT+D+ V+
Sbjct: 64  PPLPNLSVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVE 123

Query: 118 AAKAYDSAAFRMRGRKAILNFPLEA 142
           A +AYD AAF++RGRKAILNFPL+ 
Sbjct: 124 AGRAYDQAAFQLRGRKAILNFPLDV 148

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 66/87 (75%), Gaps = 7/87 (8%)

Query: 79  QKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 138
           +K   GVR+RPWGK+AAEIRDP RKG+RVWLGTFD+ ++AAKAYD AAF++RG KAI+NF
Sbjct: 142 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNF 201

Query: 139 PLEAG----ADS---PPAKNSRKRRRE 158
           PLE       D+    PA + RKR RE
Sbjct: 202 PLEVANFKQQDNEILQPANSGRKRMRE 228

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  110 bits (275), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 66/94 (70%), Gaps = 8/94 (8%)

Query: 79  QKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 138
           +K   GVR+RPWGK+AAEIRDP RKG+RVWLGTFD+ ++AAKAYD AA+++RG KAI+NF
Sbjct: 135 KKHYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNF 194

Query: 139 PLEAGADS--------PPAKNSRKRRREKTLDLQ 164
           PLE             P   +SRKR RE   + Q
Sbjct: 195 PLEVANFKQEFNNEIRPLVNSSRKRVRETVNEEQ 228

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q9FKG2|EF107_ARATH Ethylene-responsive transcription factor ERF107 OS=Arabidopsis thaliana GN=ERF107 PE=2 SV=1

 Score =  109 bits (272), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 103/179 (57%), Gaps = 31/179 (17%)

Query: 9   EESSILEFIRQFL----------LGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTF--- 55
           EESS L+ I++ L          + DF   D   +S L  +E   PV K EP SP     
Sbjct: 5   EESSDLDVIQKHLFEDLMIPDGFIEDFVFDDTAFVSGLWSLEPFNPVPKLEPSSPVLDPD 64

Query: 56  ---CEIIK--------------PEPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIR 98
               EI++              PE   ++    +   E   +   GVRRRPWGK+AAEIR
Sbjct: 65  SYVQEILQMEAESSSSSSTTTSPEVETVSNRKKTKRFEE-TRHYRGVRRRPWGKFAAEIR 123

Query: 99  DPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRR 157
           DPA+KGSR+WLGTF+SD+DAA+AYD AAF++RGRKA+LNFPL+AG    P  + RKRRR
Sbjct: 124 DPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRR 182

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 65/84 (77%), Gaps = 4/84 (4%)

Query: 79  QKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 138
           ++   GVR RPWGK+AAEIRDP R+G+RVWLGTF++ ++AA+AYD  AFR+RG KAILNF
Sbjct: 134 KRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNF 193

Query: 139 PLEAGADSPPAKNSR----KRRRE 158
           PLE    +P A++ R    KR+R+
Sbjct: 194 PLEVDKWNPRAEDGRGLYNKRKRD 217

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 75/118 (63%), Gaps = 12/118 (10%)

Query: 42  EFPVIKSEPDSPTFCEIIKPE---PLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIR 98
           +FP +K EP         KP+   P+  T + + ++         GVR+RPWGK+AAEIR
Sbjct: 82  DFPAVKVEPTENFTAMEEKPKKAIPVTETAVKAKHY--------RGVRQRPWGKFAAEIR 133

Query: 99  DPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSP-PAKNSRKR 155
           DPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL   +  P P + + KR
Sbjct: 134 DPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKR 191

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 59/74 (79%), Gaps = 1/74 (1%)

Query: 84  GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 143
           GVRRRPWGK+AAEIRDPA+ G+RVWLGT+++D +AA AYD AA+RMRG KA LNFP   G
Sbjct: 107 GVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIG 166

Query: 144 ADSP-PAKNSRKRR 156
            + P P + + KRR
Sbjct: 167 LNEPEPVRVTAKRR 180

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
37730469	198	ethylene-responsive element binding fact	0.836	0.722	0.554	2e-38
224112805	234	AP2/ERF domain-containing transcription	0.923	0.675	0.494	9e-38
255539893	232	DNA binding protein, putative [Ricinus c	0.918	0.676	0.486	4e-37
341833964	233	ERFAP2-like protein [Pyrus x bretschneid	0.906	0.665	0.489	4e-36
381356174	224	ethylenr reponse factor ERF3 [Eriobotrya	0.888	0.678	0.494	7e-36
292668971	233	AP2 domain class transcription factor [M	0.877	0.643	0.494	8e-36
292668915	245	AP2 domain class transcription factor [M	0.900	0.628	0.454	8e-35
310892564	185	ethylene-responsive-element-binding fact	0.953	0.881	0.475	2e-34
310892566	190	ethylene-responsive-element-binding fact	0.877	0.789	0.471	5e-33
350537843	201	ethylene response factor 4 [Solanum lyco	0.918	0.781	0.445	5e-33

>gi|37730469|gb|AAO59439.1| ethylene-responsive element binding factor [Gossypium hirsutum]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/173 (55%), Positives = 113/173 (65%), Gaps = 30/173 (17%)

Query: 9   EESSILEFIRQFLLGDFTSLD------DPNLSFLQPMESEFPVIKSEPDSPTFCEIIKPE 62
           EES+ LEFIRQ LLGDF ++D      D  LS LQP   + P I        F   ++P 
Sbjct: 6   EESTTLEFIRQHLLGDFATVDAFINTLDFGLSHLQPQSHQLPEI--------FTHGVEPA 57

Query: 63  PLDITCLGSSNWTESP----QKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDA 118
           P+          T+ P    ++   GVRRRPWGK+AAEIRDP RKG RVWLGT+DSDVDA
Sbjct: 58  PI----------TKEPFCEEKRHYRGVRRRPWGKFAAEIRDPNRKGIRVWLGTYDSDVDA 107

Query: 119 AKAYDSAAFRMRGRKAILNFPLEAGADS-PPAKNS-RKRRREKTLDLQESTIS 169
           AKAYD AAF+MRG+KAILNFPLEAG  S PPA  + RKRRREK + L ES I+
Sbjct: 108 AKAYDCAAFKMRGQKAILNFPLEAGEGSQPPAVTTGRKRRREKRVWLPESDIT 160

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112805|ref|XP_002332695.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222832949|gb|EEE71426.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  161 bits (407), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 98/198 (49%), Positives = 114/198 (57%), Gaps = 40/198 (20%)

Query: 9   EESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIK---------SEPDSP------ 53
           EESS LE IRQ LLGDF S D+    F+  +ES    +          SEP+SP      
Sbjct: 5   EESSTLELIRQHLLGDFISTDE----FISNLESSIASVSVKLESSLSGSEPNSPISDQSY 60

Query: 54  -----TFCEIIKPEPLDIT-----CLGSSNWTESPQ-----------KSSEGVRRRPWGK 92
                T+   IKPE +D T       GSSN    P+           +   GVRRRPWGK
Sbjct: 61  HSTPETYSFEIKPEIIDFTPPEPVFSGSSNQYPPPEPVKMTDKGETVRHYRGVRRRPWGK 120

Query: 93  YAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNS 152
           +AAEIRDP RKGSRVWLGTFDSD DAAKAYD AAF+MRGRKAILNFP EAG   PP    
Sbjct: 121 FAAEIRDPTRKGSRVWLGTFDSDTDAAKAYDCAAFKMRGRKAILNFPSEAGLSIPPPATG 180

Query: 153 RKRRREKTLDLQESTISI 170
           RKRRR K  ++   ++ +
Sbjct: 181 RKRRRSKGEEVLPESVDV 198

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539893|ref|XP_002511011.1| DNA binding protein, putative [Ricinus communis] gi|223550126|gb|EEF51613.1| DNA binding protein, putative [Ricinus communis]

 Score =  159 bits (402), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/191 (48%), Positives = 107/191 (56%), Gaps = 34/191 (17%)

Query: 9   EESSILEFIRQFLLGDFTSLD-----------DPNLSFLQPMESEFPVIKSEPDSPT--- 54
           +ESS+LE I Q+LLGDF S D            PNL  ++      P    EP SP    
Sbjct: 5   QESSVLELISQYLLGDFPSADIFFCNLDSTLAHPNLRPVKLESDNCPASSPEPKSPVSDL 64

Query: 55  ----------FCEIIKPEPLDITCLGSSNWTESP----------QKSSEGVRRRPWGKYA 94
                       E   P+PL +     +  +  P          ++   GVRRRPWGK+A
Sbjct: 65  IQYAHDAKPEVVEPTPPQPLGLASRPINRQSPPPDSNARDDEEEKRHYRGVRRRPWGKFA 124

Query: 95  AEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRK 154
           AEIRDP RKGSRVWLGTFD DVDAAKAYD AAFRMRGRKAILNFPLEAG   PP    RK
Sbjct: 125 AEIRDPNRKGSRVWLGTFDRDVDAAKAYDCAAFRMRGRKAILNFPLEAGLADPPKNTGRK 184

Query: 155 RRREKTLDLQE 165
           RRR K  D++E
Sbjct: 185 RRRVKRADVEE 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341833964|gb|AEK94317.1| ERFAP2-like protein [Pyrus x bretschneideri]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/196 (48%), Positives = 117/196 (59%), Gaps = 41/196 (20%)

Query: 3   NMTTLEEES-SILEFIRQFLLGDFTSLDD--PNLSF-LQPMESEF----------PVIKS 48
           NM   EE+  S LE IRQ+LLGDFT  D    +L+F  QP++ E+          P+   
Sbjct: 12  NMPAHEEQDDSTLELIRQYLLGDFTFTDSFISHLNFQFQPVKPEYSSLSESGPSSPISNP 71

Query: 49  EPDSPTFC------EII-----KPEPLDITCLGSSNWT-ESPQKSSE------------- 83
              SP F       EI+     + EPL+++     N T ++P    E             
Sbjct: 72  NHHSPHFSTSETKPEIVNLPSMEAEPLNLSSPKRKNSTSQNPGPKDELQQVSGPGDALRH 131

Query: 84  --GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 141
             GVRRRPWGK+AAEIRDPARKG+RVWLGTFD+DVDAAKAYD AAF++RGRKAILNFPLE
Sbjct: 132 YRGVRRRPWGKFAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLE 191

Query: 142 AGADSPPAKNSRKRRR 157
           AG   PP   +RKRRR
Sbjct: 192 AGVSEPPVNTARKRRR 207

Source: Pyrus x bretschneideri

Species: Pyrus x bretschneideri

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|381356174|gb|AFG26328.1| ethylenr reponse factor ERF3 [Eriobotrya japonica]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 114/188 (60%), Gaps = 36/188 (19%)

Query: 4   MTTLEEES-SILEFIRQFLLGDFTSLDDPNLSFL--------------QPMESEFPVIKS 48
           M+T EE+  S LE IRQ LL DFT   D  +S+L              QP++ E+   ++
Sbjct: 13  MSTHEEQDDSTLELIRQHLLEDFT-FTDSIISYLNFQITPDDISYFEFQPVKPEYSYSET 71

Query: 49  EPDSPTFCEIIKPEPLDI-----------TCLGSSNWTESPQ--------KSSEGVRRRP 89
           +P+      + + EPL++           TC  SS+  E  Q        K   GVRRRP
Sbjct: 72  KPERVNLPSM-EVEPLNLSSQCSPKRKNSTCQTSSSKDELQQVSGSGDVLKHYRGVRRRP 130

Query: 90  WGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPA 149
           WGKYAAEIRDP RKG+RVWLGTFD+DVDAAKAYD AAF++RGRKAILNFPLEAG   PP 
Sbjct: 131 WGKYAAEIRDPVRKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLEAGLSKPPV 190

Query: 150 KNSRKRRR 157
             +RKRRR
Sbjct: 191 NTARKRRR 198

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668971|gb|ADE41140.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  154 bits (390), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/190 (49%), Positives = 112/190 (58%), Gaps = 40/190 (21%)

Query: 8   EEESSILEFIRQFLLGDFTSLDD--PNLSF-LQPMESEF----------PVIKSEPDSPT 54
           E++ S LE IRQ LLGDFT  D    +L+F  QP++ E+          P+      SP 
Sbjct: 18  EQDDSTLELIRQHLLGDFTFTDSFISHLNFQFQPVKPEYSSLSESGPSSPISNPNHHSPQ 77

Query: 55  FCEI-IKP----------EPLDITCLGSSNWT-ESPQKSSE---------------GVRR 87
           F     KP          EPL+++     N T ++P    E               GVRR
Sbjct: 78  FSNSETKPKIVNLPSMEVEPLNLSSPKRKNSTSQNPGPKDELQQVSGPGDALRHYRGVRR 137

Query: 88  RPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSP 147
           RPWGKYAAEIRDPARKG+RVWLGTFD+DVDAAKAYD AAF++RGRKAILNFPLEAG   P
Sbjct: 138 RPWGKYAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLRGRKAILNFPLEAGVSEP 197

Query: 148 PAKNSRKRRR 157
           P   +RKRRR
Sbjct: 198 PVNTARKRRR 207

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668915|gb|ADE41112.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  151 bits (382), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 94/207 (45%), Positives = 115/207 (55%), Gaps = 53/207 (25%)

Query: 4   MTTLEEESSILEFIRQFLLGDFTSLDD--PNLSF-----------LQPMESEF------- 43
           M+T E++ S LE IRQ LL DFT  D    +L+F            QP++ E+       
Sbjct: 13  MSTHEQDDSTLELIRQHLLDDFTFTDSFISHLNFEITPDDISYFEFQPVKPEYSSLSESG 72

Query: 44  ------------PVIKSEPDSPTFCEI--IKPEPLDI-----------TCLGSSNWTESP 78
                       P + +    P    +  ++ EPL++           TC  SS+  E  
Sbjct: 73  SSSPISTPNYHSPQLSNSETKPESVNLPSMEVEPLNLSSQCSPKRKYNTCQTSSSKDELQ 132

Query: 79  Q--------KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMR 130
           Q        K   GVRRRPWGKYAAEIRDPARKG+RVWLGTFD+DVDAAKAYD AAF++R
Sbjct: 133 QVSGSGDVLKHYRGVRRRPWGKYAAEIRDPARKGTRVWLGTFDTDVDAAKAYDCAAFKLR 192

Query: 131 GRKAILNFPLEAGADSPPAKNSRKRRR 157
           GRKAILNFPLEAG   PP   +RKRRR
Sbjct: 193 GRKAILNFPLEAGLSEPPVNTARKRRR 219

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310892564|gb|ADP37424.1| ethylene-responsive-element-binding factor 9 [Petunia x hybrida]

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/183 (47%), Positives = 112/183 (61%), Gaps = 20/183 (10%)

Query: 5   TTLEEESSILEFIRQFLLGDFTSLDD--PNLSF----------LQP--MESEFPVIKSEP 50
           TT+E++   LE I Q LLGDFTS +     L F           QP   + +FP  +++P
Sbjct: 3   TTIEDQELTLELISQHLLGDFTSTESFISGLDFCFSSLSDDCHYQPNNFDQDFPEFETKP 62

Query: 51  D---SPTFCEIIKP--EPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGS 105
           +   SP             + + L ++   +  +K   GVRRRPWGKYAAEIRDP RKGS
Sbjct: 63  NITLSPVTSANTSASSNTTNDSSLNNNTVDDGKKKHYRGVRRRPWGKYAAEIRDPTRKGS 122

Query: 106 RVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSRKRRREK-TLDLQ 164
           RVWLGT+++DV+AA+AYDSAAF+MRGRKAILNFP +AG   PPA   RKRRR   T++  
Sbjct: 123 RVWLGTYETDVNAARAYDSAAFKMRGRKAILNFPFDAGKSVPPADIGRKRRRNNYTMNYT 182

Query: 165 EST 167
            ST
Sbjct: 183 FST 185

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310892566|gb|ADP37425.1| ethylene-responsive-element-binding factor 10 [Petunia x hybrida]

 Score =  145 bits (367), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/191 (47%), Positives = 113/191 (59%), Gaps = 41/191 (21%)

Query: 6   TLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEF-----PV-IKSE---------P 50
           T  EE   L+ IRQ LL DFT+ +    SF+  + S F     PV +K+E         P
Sbjct: 2   TTSEEGLTLDLIRQHLLEDFTTTE----SFINSLNSCFSDTIPPVLVKTEQPSTSNNNSP 57

Query: 51  DSPT------FCEI--IKPEPLDITC--------------LGSSNWTESPQKSSEGVRRR 88
            SP       F E+  IK + LD                   SSN  ++ +K+  GVRRR
Sbjct: 58  HSPVSLYFTDFPELFNIKSDILDSPLSDSSVSSNTIISSDTTSSNEYDNMKKNYRGVRRR 117

Query: 89  PWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPP 148
           PWGKYAAEIRDP++KGSR+WLGTFD+D+DAA+AYD AAF+MRGRKAILNFP++AG    P
Sbjct: 118 PWGKYAAEIRDPSKKGSRIWLGTFDTDMDAARAYDCAAFKMRGRKAILNFPMDAGKSGAP 177

Query: 149 AKNSRKRRREK 159
           A   RKRRR+ 
Sbjct: 178 ANIGRKRRRDH 188

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350537843|ref|NP_001234313.1| ethylene response factor 4 [Solanum lycopersicum] gi|28274834|gb|AAO34706.1| ethylene response factor 4 [Solanum lycopersicum]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/200 (44%), Positives = 112/200 (56%), Gaps = 43/200 (21%)

Query: 6   TLEEESSILEFIRQFLLGDFTS----LDDPNLSFLQPMESE------FPVIKSEP----- 50
           T ++E   LE IRQ LL DFT+    +D  N  F   + S       F  +K+EP     
Sbjct: 2   TKQDEGLTLELIRQHLLEDFTTTESFIDSLNSCFSDHISSSDDISPVFTSVKTEPSTSNS 61

Query: 51  --DSPTFCEIIKPE-------------------------PLDITCLGSSNWTESPQKSSE 83
             DSP      +P                          P+  +  GS N   + +K+  
Sbjct: 62  LSDSPNSSYPNEPNSPISRYFNLRSDFPEFKIDSDTILSPVFDSSAGS-NEDNNKKKNYR 120

Query: 84  GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 143
           GVRRRPWGK+AAEIRDP+RKGSR+WLGTFD+D+DAA+AYD AAF+MRGRKAILNFPL+AG
Sbjct: 121 GVRRRPWGKFAAEIRDPSRKGSRIWLGTFDTDIDAARAYDCAAFKMRGRKAILNFPLDAG 180

Query: 144 ADSPPAKNSRKRRREKTLDL 163
               PA   RKRRRE  ++L
Sbjct: 181 KSGAPANVGRKRRRENKMEL 200

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.502	0.427	0.674	3.1e-28
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.730	0.466	0.476	1.9e-26
TAIR|locus:2176187	221	AT5G51190 [Arabidopsis thalian	0.871	0.674	0.437	3.2e-26
TAIR|locus:2151591	241	ERF104 "ethylene response fact	0.906	0.643	0.432	4e-26
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.514	0.312	0.545	1e-25
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.713	0.502	0.461	1.7e-25
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.485	0.276	0.626	4.6e-25
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.385	0.217	0.681	3.9e-21
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.339	0.417	0.758	9.2e-20
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.432	0.556	0.615	1.2e-19

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query:    84 GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 143
             GVRRRPWGK+AAEIRDPA+KGSR+WLGTF+SD+DAA+AYD AAF++RGRKA+LNFPL+AG
Sbjct:   109 GVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAG 168

Query:   144 ADSPPAKNSRKRRREKTLDLQESTIS 169
                 P  + RKRRR      Q +T S
Sbjct:   169 KYDAPVNSCRKRRRTDVPQPQGTTTS 194

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 61/128 (47%), Positives = 80/128 (62%)

Query:    30 DPNLSFLQPMESEFPVIKSE-PDSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEGVRRR 88
             +P+ S      S FP +K E P+S    + + P   + T   S+  T +  K   GVR+R
Sbjct:    96 EPSSSSSDEDRSSFPSVKIETPESFAAVDSV-PVKKEKTSPVSAAVTAAKGKHYRGVRQR 154

Query:    89 PWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSP- 147
             PWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL   +  P 
Sbjct:   155 PWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPD 214

Query:   148 PAKNSRKR 155
             P +   KR
Sbjct:   215 PVRIKSKR 222

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2176187 AT5G51190 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 73/167 (43%), Positives = 93/167 (55%)

Query:     2 SNMTTLEEESSILEFIRQFLLGDFTSLDDPNLSFLQPMESEFPVIKSEPDSPTFCEIIKP 61
             S+    E++ S L+ I Q LL DF SLD    +F   +        S+   P    I  P
Sbjct:     4 SHQQQQEQDQSALDLITQHLLTDFPSLD----TFASTIHHCTTSTLSQR-KPPLATIAVP 58

Query:    62 EPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKA 121
                 +         E+ Q+   GVRRRPWGKYAAEIRDP +KG RVWLGTFD+ ++AA+ 
Sbjct:    59 TTAPVV-------QENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARG 111

Query:   122 YDSAAFRMRGRKAILNFPLEAGADSPPAKNSR------KRRREKTLD 162
             YD AAF++RG KAILNFPLEAG       N +      KR+R+ T D
Sbjct:   112 YDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTED 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151591 ERF104 "ethylene response factor 104" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 74/171 (43%), Positives = 102/171 (59%)

Query:     4 MTTLEEESSILEFIRQFLLGDFTSL--DDPNL--SFLQPMESEF-P-VIKSEPDSP--TF 55
             M T ++E+  ++FI Q LL DF S+  D P+L  + L    SE  P  I ++   P  T 
Sbjct:     1 MAT-KQEALAIDFISQHLLTDFVSMETDHPSLFTNQLHNFHSETGPRTITNQSPKPNSTL 59

Query:    56 CEIIKPEP-LDIT-CLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFD 113
              +   P P L ++  + +    E  ++   GVRRRPWGKYAAEIRDP +KG R+WLGT+D
Sbjct:    60 NQRKPPLPNLSVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYD 119

Query:   114 SDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSPPAKNSR-----KRRREK 159
             + V+A +AYD AAF++RGRKAILNFPL+    S            KR+R+K
Sbjct:   120 TAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDK 170

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 48/88 (54%), Positives = 67/88 (76%)

Query:    84 GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAG 143
             GVR RPWGK+AAEIRDP R+G+RVWLGTF++ ++AA+AYD  AFR+RG KAILNFPLE  
Sbjct:   139 GVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEVD 198

Query:   144 ADSPPAKNSRKRRREKTLDLQESTISII 171
               +P A++ R    ++  D +E  ++++
Sbjct:   199 KWNPRAEDGRGLYNKRKRDGEEEEVTVV 226

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 60/130 (46%), Positives = 79/130 (60%)

Query:    42 EFPVIKSEP-DSPTFCEIIKPEPLDITCLGSSNWTESPQKSSEGVRRRPWGKYAAEIRDP 100
             +FP +K EP ++ T  E    + + +T       T    K   GVR+RPWGK+AAEIRDP
Sbjct:    82 DFPAVKVEPTENFTAMEEKPKKAIPVT------ETAVKAKHYRGVRQRPWGKFAAEIRDP 135

Query:   101 ARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGADSP-PAKNSRKRRREK 159
             A+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL   +  P P + + KR    
Sbjct:   136 AKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRVNSGEPDPVRITSKRSSSS 195

Query:   160 TLDLQESTIS 169
             +     ST S
Sbjct:   196 SSSSSSSTSS 205

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 52/83 (62%), Positives = 65/83 (78%)

Query:    75 TESPQKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKA 134
             +E  +K   GVR+RPWGK+AAEIRDP ++GSRVWLGTFD+ ++AA+AYD AAFR+RG KA
Sbjct:   149 SEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKA 208

Query:   135 ILNFPLEAGADSPPAKNSRKRRR 157
             ILNFPLE G   P A    K+R+
Sbjct:   209 ILNFPLEVGKWKPRADEGEKKRK 231

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 45/66 (68%), Positives = 55/66 (83%)

Query:    80 KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
             K   GVR+RPWGK+AAEIRDPA+ G+RVWLGTFDS  +AA AYD AA+RMRG +A+LNFP
Sbjct:   147 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFP 206

Query:   140 LEAGAD 145
             L  G++
Sbjct:   207 LRIGSE 212

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/58 (75%), Positives = 51/58 (87%)

Query:    84 GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 141
             GVR+RPWGKYAAEIRD AR G+RVWLGTF++  DAA+AYD AAF MRG++AILNFP E
Sbjct:    16 GVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 48/78 (61%), Positives = 55/78 (70%)

Query:    79 QKSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNF 138
             Q    GVRRRPWGKYAAEIRD  + G RVWLGTFD+  DAA+AYD AA+ MRG+ AILNF
Sbjct:    17 QGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNF 76

Query:   139 PLE----AGADSPPAKNS 152
             P E     G+ S  A +S
Sbjct:    77 PHEYNMGTGSSSTAANSS 94

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	5e-30
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	4e-27
pfam00847	53	pfam00847, AP2, AP2 domain	1e-12

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  103 bits (260), Expect = 5e-30
 Identities = 40/56 (71%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 84  GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
           GVR+RPWGK+ AEIRDP  KG RVWLGTFD+  +AA+AYD AAF+ RGR A LNFP
Sbjct: 4   GVRQRPWGKWVAEIRDP-SKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 96.6 bits (241), Expect = 4e-27
 Identities = 36/56 (64%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 84  GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
           GVR+RPWGK+ AEIRDP+  G R+WLGTFD+  +AA+AYD AA ++RG  A+LNFP
Sbjct: 5   GVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 84  GVRRRP-WGKYAAEIRDP-ARKGSRVWLGTFDSDVDAAKAYDSAAFRMRG 131
           GVR    WG++ AEIRDP  +K  R  LGTF ++ +AA+A  +A  ++RG
Sbjct: 5   GVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGTE-EAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.53
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.34
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.48

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=8.4e-22  Score=133.86  Aligned_cols=61  Identities=59%  Similarity=1.133  Sum_probs=56.9

Q ss_pred             CceeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030785           80 KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE  141 (171)
Q Consensus        80 S~yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~G~~A~lNFp~~  141 (171)
                      |+|+||+++++|||+|+|+++.. |+++|||+|+|+||||.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~-gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCC-CceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            68999999989999999999532 79999999999999999999999999999999999975

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=1.3e-20  Score=129.55  Aligned_cols=63  Identities=63%  Similarity=1.115  Sum_probs=58.6

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 030785           81 SSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEAGA  144 (171)
Q Consensus        81 ~yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~G~~A~lNFp~~~~~  144 (171)
                      +|+||+++++|||+|+|+++. +|+.+|||+|+|+||||+|||.++++++|.++.+|||.+.|.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988899999999875 479999999999999999999999999999999999998764

>PHA00280 putative NHN endonuclease

Probab=99.53  E-value=2.1e-14  Score=111.38  Aligned_cols=58  Identities=14%  Similarity=0.074  Sum_probs=52.3

Q ss_pred             CCCCCCCceeeeEECCC-CcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 030785           74 WTESPQKSSEGVRRRPW-GKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAI  135 (171)
Q Consensus        74 ~~~~~~S~yRGV~~~~~-GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~G~~A~  135 (171)
                      ..+.++|+|+||+|.+. |||+|+|.+   +|++++||.|+++|+|+.||+ ++.+++|++|.
T Consensus        61 ~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         61 TPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            34567899999998766 999999998   899999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.34  E-value=2.9e-12  Score=84.84  Aligned_cols=53  Identities=26%  Similarity=0.381  Sum_probs=46.6

Q ss_pred             CceeeeEECCC-CcEEEEEecCCCCC--eEEecCCCCCHHHHHHHHHHHHHHhcCC
Q 030785           80 KSSEGVRRRPW-GKYAAEIRDPARKG--SRVWLGTFDSDVDAAKAYDSAAFRMRGR  132 (171)
Q Consensus        80 S~yRGV~~~~~-GKW~A~I~~~~~kG--k~i~LGtFdT~eeAArAYD~AA~k~~G~  132 (171)
                      |+|+||++++. ++|+|+|+++..+|  +.++||.|++++||++||+.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999998876 99999999854443  8999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.48  E-value=5.7  Score=25.21  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             cEEEEEe--cC-CCCCeEEecCCCCCHHHHHHHHHHHHHHh
Q 030785           92 KYAAEIR--DP-ARKGSRVWLGTFDSDVDAAKAYDSAAFRM  129 (171)
Q Consensus        92 KW~A~I~--~~-~~kGk~i~LGtFdT~eeAArAYD~AA~k~  129 (171)
                      +|...|.  ++ ..+-++++-+-|.|..||-.+...+...+
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~   41 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL   41 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence            5888883  32 23336788999999999999988876665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		5e-21
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		5e-21

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 80  KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
           K   GVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFP
Sbjct: 4   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63
Query: 140 L 140
           L
Sbjct: 64  L 64

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 52/61 (85%)
Query: 80  KSSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFP 139
           K   GVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFP
Sbjct: 1   KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
Query: 140 L 140
           L
Sbjct: 61  L 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
1gcc_A	63	Ethylene responsive element binding factor 1; tran	6e-38

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  123 bits (311), Expect = 6e-38
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 84  GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 141
           GVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL 
Sbjct: 5   GVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	95.07
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	81.3

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=1.1e-26  Score=160.04  Aligned_cols=62  Identities=69%  Similarity=1.246  Sum_probs=59.3

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030785           81 SSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA  142 (171)
Q Consensus        81 ~yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~G~~A~lNFp~~~  142 (171)
                      +||||+++++|||+|+|++|.++|+++|||+|+|+||||+|||.|+++++|.+|.+|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            79999999899999999999877899999999999999999999999999999999999874

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=95.07  E-value=0.012  Score=41.73  Aligned_cols=46  Identities=17%  Similarity=0.092  Sum_probs=31.9

Q ss_pred             CCCCceeeeEECCC-CcEEEEEecCCCCCeEEe-------cCCC--CCHHHHHHHHHHHH
Q 030785           77 SPQKSSEGVRRRPW-GKYAAEIRDPARKGSRVW-------LGTF--DSDVDAAKAYDSAA  126 (171)
Q Consensus        77 ~~~S~yRGV~~~~~-GKW~A~I~~~~~kGk~i~-------LGtF--dT~eeAArAYD~AA  126 (171)
                      .++|+|+||+|.+. +.|.|+-.+   +|++..       +| |  +.+..||..|-+..
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rrsRtF~~k~yG-f~~e~Ak~~AIef~k~l   58 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRRSRTFHPKHFN-MDKEKARLAAVEFMKTV   58 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEEEEEECCTTHH-HHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEeeeeechhhcC-cCHHHHHHHHHHHHHHH
Confidence            46899999999888 999999998   455542       44 4  35555555554443

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=81.30  E-value=0.2  Score=38.83  Aligned_cols=38  Identities=11%  Similarity=-0.094  Sum_probs=28.8

Q ss_pred             eeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHH
Q 030785           82 SEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYD  123 (171)
Q Consensus        82 yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD  123 (171)
                      ++||.+...++|.+.|..   + +..+||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            467755222679999987   3 4567899999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (274), Expect = 8e-33
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 84  GVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLE 141
           GVR+RPWGK+AAEIRDPA+ G+RVWLGTF++  DAA AYD AAFRMRG +A+LNFPL 
Sbjct: 5   GVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.94

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.1e-27  Score=162.52  Aligned_cols=62  Identities=69%  Similarity=1.246  Sum_probs=59.2

Q ss_pred             ceeeeEECCCCcEEEEEecCCCCCeEEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 030785           81 SSEGVRRRPWGKYAAEIRDPARKGSRVWLGTFDSDVDAAKAYDSAAFRMRGRKAILNFPLEA  142 (171)
Q Consensus        81 ~yRGV~~~~~GKW~A~I~~~~~kGk~i~LGtFdT~eeAArAYD~AA~k~~G~~A~lNFp~~~  142 (171)
                      +||||+++++|||.|+|++|..+++++|||+|+|+||||+|||.||++++|.+|.+|||+++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            69999998889999999998888899999999999999999999999999999999999874