Citrus Sinensis ID: 030803

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Secondary Structure (PSIPRED)
ccccHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccEEEEEEccccEEEEEcccccccHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccHEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccHHHHHHHHcccccccccccccccccccccEEEEEEccccccHHHEcHHHcccHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MINFEATElrlglpggnggsseggggggggekaknnningmkrgFADTVVDLKLnlstkesggidviektkgksasatgatdlskppaksqvvgwppvrsfRKNIMAVQkdneegdnkassssssnVAFVKVsmdgapylrKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Flexible Loop (DISEMBL)
MINFEATELrlglpggnggssegggggggGEKAKNNNINGMKRGFADTVVDLKLNlstkesggidviektkgksasatgatdlskppaksqvvgwppvrSFRKNIMAVQKdneegdnkassssssnvafVKVSMDGAPYLRKVDLKLYKSYQELSdalgkmfssftigtyi
Low Complexity Region (SEG)
MINFEATELRLGLPggnggsseggggggggekaknnningMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAssssssNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Disordered region (IsUnstruct)
********************************************FADTVVDLKLN************************************************************************AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG***
Disordered Region (DISOPRED)
MINFEATELRLGLP******************************************************************************************************************FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Disordered Region (DISEMBL)
MINFEATELRLGLPGGNG************EKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKT**********************VGWPPVRSFRKNIMAVQ****************NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Disordered Region (DISPRO)
MINFEATELRLGLPG*********************************************************************KPPAKSQVVGWPPVRSFRKNIMAV****************SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTYI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
O24407	236	Auxin-responsive protein	yes	no	0.871	0.631	0.576	5e-42
Q38832	228	Auxin-responsive protein	no	no	0.894	0.671	0.550	2e-40
P13089	243	Auxin-induced protein AUX	no	no	0.865	0.609	0.535	1e-38
Q38825	243	Auxin-responsive protein	no	no	0.912	0.641	0.497	4e-37
P93830	229	Auxin-responsive protein	no	no	0.818	0.611	0.494	3e-33
Q38826	321	Auxin-responsive protein	no	no	0.953	0.507	0.429	3e-30
P0C132	277	Auxin-responsive protein	yes	no	0.918	0.566	0.449	1e-29
Q9ZSY8	305	Auxin-responsive protein	no	no	0.964	0.540	0.415	7e-28
Q75GK0	233	Auxin-responsive protein	no	no	0.795	0.583	0.387	4e-26
Q10D34	236	Auxin-responsive protein	no	no	0.456	0.330	0.632	4e-23

>sp|O24407|IAA16_ARATH Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=1 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 123/182 (67%), Gaps = 33/182 (18%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G          GE A  NN    KRGF++TV DLKLNLS   
Sbjct: 1   MINFEATELRLGLPGGNHG----------GEMAGKNN---GKRGFSETV-DLKLNLS--- 43

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNEEGD 116
           S  +D + K   ++        + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  EG+
Sbjct: 44  STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGN 99

Query: 117 NKASSSS--------SSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
           +K S SS         + VA+VKVSMDGAPYLRK+DLKLYK+YQ+LS+AL KMFSSFTIG
Sbjct: 100 DKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIG 159

Query: 169 TY 170
            Y
Sbjct: 160 NY 161

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38832|IAA14_ARATH Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2

 Score =  165 bits (417), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 111/169 (65%), Gaps = 16/169 (9%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           +N + TEL LGLPGG          G G            KRGF++TV DLKLNL + + 
Sbjct: 1   MNLKETELCLGLPGGTETVESPAKSGVGN-----------KRGFSETV-DLKLNLQSNKQ 48

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASS 121
           G +D+   T G     T   D SKPPAK+QVVGWPPVR++RKN+MA QK  E    +A S
Sbjct: 49  GHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNYRKNVMANQKSGEA--EEAMS 104

Query: 122 SSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
           S    VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KMFSSFT+G+Y
Sbjct: 105 SGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSY 153

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P13089|AUX28_SOYBN Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1

 Score =  159 bits (401), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/183 (53%), Positives = 115/183 (62%), Gaps = 35/183 (19%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADT----------VVD 51
           + FE TELRLGLPG NGG+ E               +   KRGF++T           VD
Sbjct: 1   MGFEETELRLGLPG-NGGTEE---------------VLIRKRGFSETETGHEDESATTVD 44

Query: 52  LKLNLSTKESGGI-----DVIEKTKGKSASATG-ATDLSKPPAKSQVVGWPPVRSFRKNI 105
           L LNLS+KE+        D  +K K      T    D +KPPAK+QVVGWPPVRSFRKN+
Sbjct: 45  LMLNLSSKEAATTAAAAADPTDKHKTLPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNM 104

Query: 106 MAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSF 165
           +AVQK   E   K   +SS N +FVKVSMDGAPYLRKVDLK+YKSY+ELSD+LGKMFSSF
Sbjct: 105 LAVQKSVGEESEK---NSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSF 161

Query: 166 TIG 168
           T G
Sbjct: 162 TFG 164

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Glycine max (taxid: 3847)

>sp|Q38825|IAA7_ARATH Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/177 (49%), Positives = 109/177 (61%), Gaps = 21/177 (11%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           ++N +ATEL LGLPGG            G            KRGF++TV DL LNL + +
Sbjct: 5   LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query: 61  SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
            G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +  G  +AS
Sbjct: 53  EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSS-GAEEAS 110

Query: 121 SS-------SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
           S         ++    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+G Y
Sbjct: 111 SEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNY 167

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P93830|IAA17_ARATH Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2

 Score =  140 bits (354), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 108/176 (61%), Gaps = 36/176 (20%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE- 60
           +N   TEL LGLPGG+  +                 + G KRGF++TV DLKLNL+ +  
Sbjct: 7   LNLRETELCLGLPGGDTVAP----------------VTGNKRGFSETV-DLKLNLNNEPA 49

Query: 61  ----SGGIDVIE-KTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIM-AVQKDNEE 114
               S   DV+   +K KSA      D +KPPAK+QVVGWPPVRS+RKN+M + QK    
Sbjct: 50  NKEGSTTHDVVTFDSKEKSACPK---DPAKPPAKAQVVGWPPVRSYRKNVMVSCQK---- 102

Query: 115 GDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
                SS      AFVKVSMDGAPYLRK+DL++YKSY ELS+AL  MFSSFT+G +
Sbjct: 103 -----SSGGPEAAAFVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGKH 153

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38826|IAA8_ARATH Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=1 SV=1

 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/198 (42%), Positives = 105/198 (53%), Gaps = 35/198 (17%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGG--------------------GGGGEKAKNNNINGM 41
           +NF+ATELRLGLP       E   G                     G       N ++G 
Sbjct: 47  LNFKATELRLGLPESQSPERETDFGLLSPRTPDEKLLFPLLPSKDNGSATTGHKNVVSGN 106

Query: 42  KRGFADTVVDLK-LNLSTKESGGIDVIEKTKGKSASATGATDLSK--------PPAKSQV 92
           KRGFADT  +   +  S +  GGI+++   K K  S +   + S         P AK+QV
Sbjct: 107 KRGFADTWDEFSGVKGSVRPGGGINMMLSPKVKDVSKSIQEERSHAKGGLNNAPAAKAQV 166

Query: 93  VGWPPVRSFRKNIMA--VQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKS 150
           VGWPP+RS+RKN MA    K+ +E D K        V FVKVSMDGAPYLRKVDL+ Y S
Sbjct: 167 VGWPPIRSYRKNTMASSTSKNTDEVDGKPGL----GVLFVKVSMDGAPYLRKVDLRTYTS 222

Query: 151 YQELSDALGKMFSSFTIG 168
           YQ+LS AL KMFS FT+G
Sbjct: 223 YQQLSSALEKMFSCFTLG 240

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|P0C132|IAA30_ORYSJ Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/207 (44%), Positives = 113/207 (54%), Gaps = 50/207 (24%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLS---- 57
           + FEATELRLGLPGG G              A     +  KRGFA+T +DLKL L     
Sbjct: 5   LAFEATELRLGLPGGGGDGD---------AAAAAARSSSGKRGFAET-IDLKLKLEPAAA 54

Query: 58  -------------TKESGGIDVI------------------EKTKGKSASATGATDLSKP 86
                              +D++                  +++  +S+  T A D  KP
Sbjct: 55  AVDDDDDKEEAAADDREKKVDIVGADNDDASPPAAAAAGGMKRSPSQSSVVTAAADPEKP 114

Query: 87  PA-KSQVVGWPPVRSFRKNIMAVQ----KDNEEGDNKASSSSSSNVAFVKVSMDGAPYLR 141
            A K+QVVGWPPVRS+RKNI+AVQ    KD  +G    S + ++  AFVKVSMDGAPYLR
Sbjct: 115 RAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLR 174

Query: 142 KVDLKLYKSYQELSDALGKMFSSFTIG 168
           KVDLK+YKSY ELS AL KMFSSFTIG
Sbjct: 175 KVDLKMYKSYLELSKALEKMFSSFTIG 201

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  123 bits (308), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 107/195 (54%), Gaps = 30/195 (15%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNL----S 57
           +NF+ATELRLGLPG    S E            +  ++G KR F+D + D    +    S
Sbjct: 38  LNFKATELRLGLPGSE--SPERVDSRFLALNKSSCPVSGAKRVFSDAINDSNKWVFSPGS 95

Query: 58  TKESGGI--------DVIEKTKGKSASATGA--------TDLSKPPAKSQVVGWPPVRSF 101
           T  +G +         V++   GKS + T          +  + P +K+QVVGWPP+RSF
Sbjct: 96  TTATGDVGSGSGPRTSVVK--DGKSTTFTKPAVPVKEKKSSATAPASKAQVVGWPPIRSF 153

Query: 102 RKNIMAVQKDNEEGDN------KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
           RKN MA  +  + G+N      +A S       +VKVSM+GAPYLRK+DLK YKSY ELS
Sbjct: 154 RKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELS 213

Query: 156 DALGKMFSSFTIGTY 170
            AL KMFS FTIG +
Sbjct: 214 SALEKMFSCFTIGQF 228

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q75GK0|IAA11_ORYSJ Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1

 Score =  117 bits (293), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 94/191 (49%), Gaps = 55/191 (28%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + F+ TELRLGLPG    ++   G                KRGFA+T+ DLKL L     
Sbjct: 4   LGFDETELRLGLPGAGELAARSSG----------------KRGFAETI-DLKLKLQPAAP 46

Query: 62  GGID-----------------------VIEKTKGKSASATGATDLSKPPA-KSQVVGWPP 97
             +                         ++++  +S+  T   D  KP A K+QVVGWPP
Sbjct: 47  AAVSGEEGAQEDKEDADAAAAAADEKMSMKRSASQSSVVTAEPDPDKPRAPKAQVVGWPP 106

Query: 98  VRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDA 157
           VRSFRKN++A                    A VKVSMDGAPYLRK+D+ +YKSY ELS A
Sbjct: 107 VRSFRKNVLA--------------EKCKAAALVKVSMDGAPYLRKIDVAMYKSYPELSMA 152

Query: 158 LGKMFSSFTIG 168
              MF+SFTIG
Sbjct: 153 FQNMFTSFTIG 163

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q10D34|IAA13_ORYSJ Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 9/87 (10%)

Query: 89  KSQVVGWPPVRSFRKNIMAVQ----KDNEEGDNK-----ASSSSSSNVAFVKVSMDGAPY 139
           K+Q VGWPPVRSFR+NIM VQ    K  EE D +     A++S S++ AFVKVSMDGAPY
Sbjct: 84  KAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPY 143

Query: 140 LRKVDLKLYKSYQELSDALGKMFSSFT 166
           LRKVDLK+Y SY++LS AL KMF +FT
Sbjct: 144 LRKVDLKMYNSYKDLSLALQKMFGTFT 170

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224123424	246	predicted protein [Populus trichocarpa]	0.906	0.630	0.680	1e-49
224131258	250	predicted protein [Populus trichocarpa]	0.912	0.624	0.631	2e-47
20385508	249	auxin-regulated protein [Populus tremula	0.900	0.618	0.622	4e-47
255580939	257	Auxin-responsive protein IAA16, putative	0.906	0.603	0.616	3e-46
110826446	258	auxin-regulated protein [Populus tomento	0.923	0.612	0.617	8e-46
332167939	246	auxin-responsive protein [Gossypium hirs	0.859	0.597	0.622	2e-43
312282545	234	unnamed protein product [Thellungiella h	0.859	0.628	0.576	4e-43
224066307	237	predicted protein [Populus trichocarpa]	0.871	0.628	0.601	2e-42
157849760	231	indoleacetic acid-induced protein 16 [Br	0.853	0.632	0.594	4e-42
113700411	251	AUX/IAA16 B [Malus x domestica]	0.918	0.625	0.6	6e-42

>gi|224123424|ref|XP_002319075.1| predicted protein [Populus trichocarpa] gi|222857451|gb|EEE94998.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 115/169 (68%), Positives = 130/169 (76%), Gaps = 14/169 (8%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG G        G  GE AK+N     KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGIGN-------GNDGEVAKSNG----KRGFSETV-DLKLNLSTKE 61

Query: 61  SG-GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKA 119
           SG G D  +  K K+ +   +TD +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +   K 
Sbjct: 62  SGKGGDEEKVMKEKTVAPPASTDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSNDNGEK- 120

Query: 120 SSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
           S SS + VAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG
Sbjct: 121 SGSSGTGVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131258|ref|XP_002328494.1| predicted protein [Populus trichocarpa] gi|118484744|gb|ABK94241.1| unknown [Populus trichocarpa] gi|222838209|gb|EEE76574.1| predicted protein [Populus trichocarpa]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/171 (63%), Positives = 126/171 (73%), Gaps = 15/171 (8%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MIN+E TELRLGLPGG          G  GE AK N     KRGF++TV DLKLNLSTKE
Sbjct: 15  MINYEETELRLGLPGG-------ASNGNDGEAAKGNG----KRGFSETV-DLKLNLSTKE 62

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKD-NEEGDN 117
           +G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK+ N+EG+ 
Sbjct: 63  TGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 122

Query: 118 KASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
            +SS ++   AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIG
Sbjct: 123 ASSSGTTGTAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIG 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20385508|gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 107/172 (62%), Positives = 124/172 (72%), Gaps = 18/172 (10%)

Query: 1   MINFEATELRLGLPGG--NGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLST 58
           M+NFE TELRLGLPGG  NG  SE     G             KRGF++TV DLKLNLST
Sbjct: 15  MMNFEETELRLGLPGGVSNGNDSEAAKSNG-------------KRGFSETV-DLKLNLST 60

Query: 59  KESG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGD 116
           KE+G  G D  +    +   A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +  
Sbjct: 61  KETGKDGSDQEKVVMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEG 120

Query: 117 NKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
            KASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIG
Sbjct: 121 EKASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIG 172

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580939|ref|XP_002531288.1| Auxin-responsive protein IAA16, putative [Ricinus communis] gi|223529121|gb|EEF31101.1| Auxin-responsive protein IAA16, putative [Ricinus communis]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/180 (61%), Positives = 132/180 (73%), Gaps = 25/180 (13%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFE TELRLGLPGG+  +          E AK   +NG KRGF++TV DLKLNLSTKE
Sbjct: 14  MINFEETELRLGLPGGSNVND--------SEFAK---VNG-KRGFSETV-DLKLNLSTKE 60

Query: 61  SGGIDVI---EKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN-EEGD 116
             G DVI   E  K K+   + + D +KPPAK+QVVGWPP+RSFRKN+MAVQK++ +EG+
Sbjct: 61  PSGKDVIVGEETMKEKATVPSSSNDPAKPPAKAQVVGWPPIRSFRKNVMAVQKNSTDEGE 120

Query: 117 NKASSSSS--------SNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
              ++S+         ++ AFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG
Sbjct: 121 KGTATSAPAAAATSGSTSAAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 180

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110826446|gb|ABH01143.1| auxin-regulated protein [Populus tomentosa]

 Score =  188 bits (477), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 125/170 (73%), Gaps = 12/170 (7%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           M+NFE TELRLGLPGG          G   E AK+N   G +  F++TV DLKLNLSTK+
Sbjct: 15  MMNFEETELRLGLPGGVSN-------GNDPEAAKSNGKRGQR--FSETV-DLKLNLSTKD 64

Query: 61  SG--GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNK 118
           +G  G D  +    + A A    D +KPP+K+QVVGWPP+RSFRKN+MAVQK++ +   K
Sbjct: 65  TGKDGSDQEKAAMKEKAVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDEGEK 124

Query: 119 ASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
           ASSS ++  AFVKVSMDGAPYLRKVDLKLYKSY+ELSDALGKMFSSFTIG
Sbjct: 125 ASSSGATGAAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIG 174

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332167939|gb|AEE25654.1| auxin-responsive protein [Gossypium hirsutum]

 Score =  180 bits (457), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/175 (62%), Positives = 125/175 (71%), Gaps = 28/175 (16%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           INFE TELRLGLPG NG           GE  KNN     KRGF++TV +LKLNLS+KE+
Sbjct: 15  INFEETELRLGLPGANGND---------GETTKNNG----KRGFSETV-NLKLNLSSKET 60

Query: 62  GGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK--DNEEGDNKA 119
              D  +K K KS+     TD +KPPAK+QVVGWPPVRSFRKNIMAVQK    EEG +K 
Sbjct: 61  VAEDS-DKMKEKSS-----TDPAKPPAKAQVVGWPPVRSFRKNIMAVQKASSEEEGGSKK 114

Query: 120 SSSSSSNVA------FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
           + +S++ +       FVKVSMDGAPYLRKVDLKLYKSYQ+LSDAL KMFSSFTIG
Sbjct: 115 AGNSAAAITTTTAAAFVKVSMDGAPYLRKVDLKLYKSYQQLSDALSKMFSSFTIG 169

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282545|dbj|BAJ34138.1| unnamed protein product [Thellungiella halophila]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/182 (57%), Positives = 123/182 (67%), Gaps = 35/182 (19%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           MINFEATELRLGLPGGN G         G   AKNN     KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG---------GDIAAKNNG----KRGFSETV-DLKLNLSSTA 46

Query: 61  SGGIDV--IEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEE---- 114
              +    I+  KGK         + KPPAK+QVVGWPPVRSFRKN+M+ QK   E    
Sbjct: 47  LDSVSEVDIQNLKGK---------VVKPPAKTQVVGWPPVRSFRKNVMSGQKQTTEVAAE 97

Query: 115 ------GDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
                 G + A+SS+++ VA+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFTIG
Sbjct: 98  GTEKTCGSSGATSSANAAVAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTIG 157

Query: 169 TY 170
            Y
Sbjct: 158 NY 159

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066307|ref|XP_002302075.1| predicted protein [Populus trichocarpa] gi|222843801|gb|EEE81348.1| predicted protein [Populus trichocarpa] gi|429326564|gb|AFZ78622.1| hypothetical protein [Populus tomentosa]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 115/168 (68%), Gaps = 19/168 (11%)

Query: 2   INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKES 61
           + FE TELRLGLPG         GGG  GE  +       KRGF++TV DLKL LS+KES
Sbjct: 9   MGFEETELRLGLPGN--------GGGAEGEMVR-------KRGFSETV-DLKLKLSSKES 52

Query: 62  GGIDVIEKTKG-KSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAS 120
           G     EKT   +      ATD +KPPAK+QVVGWPPVRSFRKN++AVQK +   D +  
Sbjct: 53  GADPNHEKTSSLQREKNLLATDPAKPPAKAQVVGWPPVRSFRKNMLAVQKSST--DQECE 110

Query: 121 SSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
                N  FVKVSMDGAPYLRKVDLK+YK+YQELSDALGKMFSSFTIG
Sbjct: 111 KVPGGNATFVKVSMDGAPYLRKVDLKMYKTYQELSDALGKMFSSFTIG 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157849760|gb|ABV89663.1| indoleacetic acid-induced protein 16 [Brassica rapa]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/180 (59%), Positives = 123/180 (68%), Gaps = 34/180 (18%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTK- 59
           MINFEATELRLGLPGGN G          G+ A  NN    KRGF++TV DLKLNLS+  
Sbjct: 1   MINFEATELRLGLPGGNHG----------GDMAMKNN---GKRGFSETV-DLKLNLSSTA 46

Query: 60  --ESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQK----DNE 113
                G+D +E  K K         + KPPAK+QVVGWPPVRSFRKN+M+ QK    D  
Sbjct: 47  LDSVSGVD-LENMKEK---------VVKPPAKAQVVGWPPVRSFRKNVMSGQKPTAGDAT 96

Query: 114 EGDNKASSS---SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
           EG  K SSS   +SS  A+VKVSMDGAPYLRK+DLKLYK+YQ+LSDAL KMFSSFT+G Y
Sbjct: 97  EGTEKTSSSNGATSSAAAYVKVSMDGAPYLRKIDLKLYKTYQDLSDALSKMFSSFTLGNY 156

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113700411|gb|ABI36494.1| AUX/IAA16 B [Malus x domestica]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/175 (60%), Positives = 124/175 (70%), Gaps = 18/175 (10%)

Query: 1   MINFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKE 60
           +INFE TELRLGLPGG   ++     G  GE +KN      KRGFA+TV DLKLN+S+++
Sbjct: 15  LINFEETELRLGLPGGILSTA-----GKDGEASKNTG----KRGFAETV-DLKLNISSED 64

Query: 61  SGGID---VIEKTKGKS-ASATGATDLSKP-PAKSQVVGWPPVRSFRKNIMAVQKDNEEG 115
               D   V++  K K  A    + D +KP  AK+QVVGWPPVRSFR NI+AVQKD  + 
Sbjct: 65  QSAGDEDQVVDMKKEKDVAPVPRSNDPTKPHAAKAQVVGWPPVRSFRXNILAVQKDVSDE 124

Query: 116 DNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
             K +S S+   AFVKVSMDGAPYLRKVDLKLYKSYQELS ALGKMFSSFTIG+Y
Sbjct: 125 GEKTNSXSA---AFVKVSMDGAPYLRKVDLKLYKSYQELSTALGKMFSSFTIGSY 176

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2129900	228	IAA14 "indole-3-acetic acid in	0.725	0.543	0.612	3.1e-35
TAIR|locus:2094598	243	IAA7 "indole-3-acetic acid 7"	0.918	0.646	0.477	1.1e-32
TAIR|locus:2084933	236	IAA16 "indoleacetic acid-induc	0.707	0.512	0.560	8.8e-31
TAIR|locus:2018374	229	AXR3 "AT1G04250" [Arabidopsis	0.684	0.510	0.548	5e-28
UNIPROTKB|Q5Z749	266	IAA21 "Auxin-responsive protei	0.923	0.593	0.430	6.6e-26
TAIR|locus:2169955	338	IAA9 "indole-3-acetic acid ind	0.719	0.363	0.443	7.1e-25
TAIR|locus:2170862	186	ATAUX2-11 "AT5G43700" [Arabido	0.543	0.5	0.466	6.2e-24
TAIR|locus:2018379	189	SHY2 "SHORT HYPOCOTYL 2" [Arab	0.672	0.608	0.403	3.7e-22
TAIR|locus:2094578	174	IAA2 "indole-3-acetic acid ind	0.257	0.252	0.644	8.7e-22
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.549	0.308	0.537	1.1e-21

TAIR|locus:2129900 IAA14 "indole-3-acetic acid inducible 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 79/129 (61%), Positives = 95/129 (73%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNL + + G +D+   T G     T   D SKPPAK+QVVGWPPVR++
Sbjct:    30 KRGFSETV-DLKLNLQSNKQGHVDL--NTNGAPKEKTFLKDPSKPPAKAQVVGWPPVRNY 86

Query:   102 RKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKM 161
             RKN+MA QK  E    +A       VAFVKVSMDGAPYLRKVDLK+Y SY++LSDAL KM
Sbjct:    87 RKNVMANQKSGEA--EEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKM 144

Query:   162 FSSFTIGTY 170
             FSSFT+G+Y
Sbjct:   145 FSSFTMGSY 153

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094598 IAA7 "indole-3-acetic acid 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 84/176 (47%), Positives = 104/176 (59%)

Query:     1 MINFEATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXXMKRGFADTVVDLKLNLSTKE 60
             ++N +ATEL LGLP                           KRGF++TV DL LNL + +
Sbjct:     5 LMNLKATELCLGLPGGAEAVESPAKSAVGS-----------KRGFSETV-DLMLNLQSNK 52

Query:    61 SGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDN---EEGDN 117
              G +D ++         T   D SKPPAK+QVVGWPPVR++RKN+M  QK +   EE  +
Sbjct:    53 EGSVD-LKNVSAVPKEKTTLKDPSKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASS 111

Query:   118 KAXXXXXXNVA---FVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
             +         A    VKVSMDGAPYLRKVDLK+YKSYQ+LSDAL KMFSSFT+G Y
Sbjct:   112 EKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNY 167

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009630 "gravitropism" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009269 "response to desiccation" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IMP

TAIR|locus:2084933 IAA16 "indoleacetic acid-induced protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 79/141 (56%), Positives = 97/141 (68%)

Query:    42 KRGFADTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSF 101
             KRGF++TV DLKLNLS   S  +D + K   ++        + KPPAK+QVVGWPPVRSF
Sbjct:    29 KRGFSETV-DLKLNLS---STAMDSVSKVDLENMKEK----VVKPPAKAQVVGWPPVRSF 80

Query:   102 RKNIMAVQK----DNEEGDNK--------AXXXXXXNVAFVKVSMDGAPYLRKVDLKLYK 149
             RKN+M+ QK    D  EG++K        +       VA+VKVSMDGAPYLRK+DLKLYK
Sbjct:    81 RKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYK 140

Query:   150 SYQELSDALGKMFSSFTIGTY 170
             +YQ+LS+AL KMFSSFTIG Y
Sbjct:   141 TYQDLSNALSKMFSSFTIGNY 161

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2018374 AXR3 "AT1G04250" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 74/135 (54%), Positives = 93/135 (68%)

Query:    42 KRGFADTVVDLKLNLSTK---ESGGI--DVIE-KTKGKSASATGATDLSKPPAKSQVVGW 95
             KRGF++TV DLKLNL+ +   + G    DV+   +K KSA      D +KPPAK+QVVGW
Sbjct:    31 KRGFSETV-DLKLNLNNEPANKEGSTTHDVVTFDSKEKSACPK---DPAKPPAKAQVVGW 86

Query:    96 PPVRSFRKNIMAVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELS 155
             PPVRS+RKN+M   + +  G   A        AFVKVSMDGAPYLRK+DL++YKSY ELS
Sbjct:    87 PPVRSYRKNVMVSCQKSSGGPEAA--------AFVKVSMDGAPYLRKIDLRMYKSYDELS 138

Query:   156 DALGKMFSSFTIGTY 170
             +AL  MFSSFT+G +
Sbjct:   139 NALSNMFSSFTMGKH 153

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;IMP;TAS

GO:0042802 "identical protein binding" evidence=IPI

UNIPROTKB|Q5Z749 IAA21 "Auxin-responsive protein IAA21" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 74/172 (43%), Positives = 91/172 (52%)

Query:     6 ATELRLGLPXXXXXXXXXXXXXXXXXXXXXXXXXX----MKRGFADTVVDLKLNLSTKES 61
             ATELRLGLP                               KRGFAD +V        + +
Sbjct:    21 ATELRLGLPGTAEEAESEGGGGGGTDAAPLTLELLPKGGAKRGFADAIVGGPAGQRREAA 80

Query:    62 GGIDVIEKTKGKSASATGATDLSK---PPAKSQVVGWPPVRSFRKNIMAVQKDNEEG--D 116
             GG     K    +A A    +  K   P AK+QVVGWPP+RS+RKN MA+ +   +G  D
Sbjct:    81 GG-----KAAAAAAEAEEEEEKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDD 135

Query:   117 NKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIG 168
              +A         +VKVSMDGAPYLRKVDLK+YK+Y+ELS AL KMFS FT+G
Sbjct:   136 GEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVG 187

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2169955 IAA9 "indole-3-acetic acid inducible 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
 Identities = 63/142 (44%), Positives = 85/142 (59%)

Query:    42 KRGFADTV---VDLKLNLSTK------ESGGIDVIEKTK-----GKSASATGATDLSKPP 87
             KRGF+DT+    + K ++ T+      E+     + K        K  S+T     S P 
Sbjct:   120 KRGFSDTMDQFAEAKSSVYTEKNWMFPEAAATQSVTKKDVPQNIPKGQSSTTNNSSSPPA 179

Query:    88 AKSQVVGWPPVRSFRKNIMAVQ-KDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLK 146
             AK+Q+VGWPPVRS+RKN +A   K+++E D +          FVKVSMDGAPYLRKVDL+
Sbjct:   180 AKAQIVGWPPVRSYRKNTLATTCKNSDEVDGRPGS----GALFVKVSMDGAPYLRKVDLR 235

Query:   147 LYKSYQELSDALGKMFSSFTIG 168
              Y +Y ELS AL KMF++FT+G
Sbjct:   236 SYTNYGELSSALEKMFTTFTLG 257

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2170862 ATAUX2-11 "AT5G43700" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 6.2e-24, Sum P(2) = 6.2e-24
 Identities = 49/105 (46%), Positives = 65/105 (61%)

Query:    66 VIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKAXXXXXX 125
             V+ +   K   +TG T+ + PP K+Q+VGWPPVRS+RKN +  +K   EG          
Sbjct:    38 VLPEATEKEIESTGKTETASPP-KAQIVGWPPVRSYRKNNVQTKKSESEGQGN------- 89

Query:   126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
                +VKVSMDGAPYLRK+DL +YK Y EL  +L  MF  F++G Y
Sbjct:    90 ---YVKVSMDGAPYLRKIDLTMYKQYPELMKSLENMFK-FSVGEY 130

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS;RCA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2018379 SHY2 "SHORT HYPOCOTYL 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 3.7e-22, Sum P(2) = 3.7e-22
 Identities = 50/124 (40%), Positives = 69/124 (55%)

Query:    47 DTVVDLKLNLSTKESGGIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIM 106
             D V + K  +S   +    V+     K   ++     + PP K+Q+VGWPPVRS+RKN +
Sbjct:    20 DNVCEAKERVSCCNNNNKRVLSTDTEKEIESSSRKTETSPPRKAQIVGWPPVRSYRKNNI 79

Query:   107 AVQKDNEEGDNKAXXXXXXNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFT 166
               +K+  E + +          +VKVSMDGAPYLRK+DL  YK Y EL  AL  MF  F+
Sbjct:    80 QSKKNESEHEGQGI--------YVKVSMDGAPYLRKIDLSCYKGYSELLKALEVMFK-FS 130

Query:   167 IGTY 170
             +G Y
Sbjct:   131 VGEY 134

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

TAIR|locus:2094578 IAA2 "indole-3-acetic acid inducible 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 8.7e-22, Sum P(3) = 8.7e-22
 Identities = 29/45 (64%), Positives = 34/45 (75%)

Query:   126 NVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
             +V++VKVSMDGAPYLRK+DLK YK+Y EL  AL  MF    IG Y
Sbjct:    76 SVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVM-IGEY 119

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 57/106 (53%), Positives = 69/106 (65%)

Query:    71 KGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDN------KAXXXXX 124
             K K +SAT       P +K+QVVGWPP+RSFRKN MA  +  + G+N      +A     
Sbjct:   129 KEKKSSATA------PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPE 182

Query:   125 XNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
                 +VKVSM+GAPYLRK+DLK YKSY ELS AL KMFS FTIG +
Sbjct:   183 QPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF 228

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O24407	IAA16_ARATH	No assigned EC number	0.5769	0.8713	0.6313	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	2e-52

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  165 bits (419), Expect = 2e-52
 Identities = 76/168 (45%), Positives = 94/168 (55%), Gaps = 36/168 (21%)

Query: 3   NFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESG 62
           N +ATELRLGLPGG+   SE             +++   KRGF++   D           
Sbjct: 2   NLKATELRLGLPGGSEPESEPST----------SSVTSNKRGFSEVTED----------- 40

Query: 63  GIDVIEKTKGKSASATGATDLSKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSS 122
           GI         + S +   D +KPPAK+QVVGWPPVRS+RKN +  +K            
Sbjct: 41  GISSSLGEDKSTISVSSNGDSAKPPAKAQVVGWPPVRSYRKNSLREKK------------ 88

Query: 123 SSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDALGKMFSSFTIGTY 170
              + ++VKVSMDGAPYLRKVDLK+YKSY ELS AL KMFS FTIG  
Sbjct: 89  ---SGSYVKVSMDGAPYLRKVDLKMYKSYDELSSALEKMFSCFTIGES 133

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=7.6e-42  Score=282.55  Aligned_cols=149  Identities=46%  Similarity=0.725  Sum_probs=6.0

Q ss_pred             CCccccccccCCCCCCCCCCCCCCCCCCCCccccCccCCCCCCCcchhhhhhcccCcCCCCCc-cccccccCCCCC-cCC
Q 030803            2 INFEATELRLGLPGGNGGSSEGGGGGGGGEKAKNNNINGMKRGFADTVVDLKLNLSTKESGGI-DVIEKTKGKSAS-ATG   79 (171)
Q Consensus         2 lnl~~TELRLGLPG~~~~~~~~~~~~~~~~~~~~~~~~~~KRgfset~vdl~l~l~~~~~~~~-~~~~~~~~~~~~-~~~   79 (171)
                      ||||+|||||||||+.++.       ............++||+|+++ +|............. .......+.... ...
T Consensus         1 ln~~~TELrLGLPG~~~~~-------~~~~~~~~~~~~~~kR~F~~a-id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   72 (215)
T PF02309_consen    1 LNLKATELRLGLPGSESPD-------ASSSSSSKKSSSGNKRGFSEA-IDSSSSNSQSSSSSSSDSSSSSSSSSTSSSSS   72 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCchhhhhcccCCCCCCCC-------cccccccccccCcccccchhh-hhhcccccccccccccccCccccccccccccc
Confidence            8999999999999987531       000011112347889999998 877652111000000 000000000000 000


Q ss_pred             CCCC-CCCCCcCCCCCCCccchhhhhhhhhcccccccccccCCCCCCCcceEEEeecCcccceeeccccccCHHHHHHHH
Q 030803           80 ATDL-SKPPAKSQVVGWPPVRSFRKNIMAVQKDNEEGDNKASSSSSSNVAFVKVSMDGAPYLRKVDLKLYKSYQELSDAL  158 (171)
Q Consensus        80 ~~~~-~~p~~k~qvVGWPPVrs~RkN~~~~~~~~~~~~~~~~~~~~~~~~yVKVsMDG~pigRKVDL~~y~sY~~L~~~L  158 (171)
                      ..+. ..|.+++|+|||||||+||||++....            .....+||||+|||+||||||||++|+||++|+.+|
T Consensus        73 ~~~~~~~p~~~~~~vgwpp~~s~r~n~~~~~~------------~~~~~~~vKV~mdG~~igRkVDL~~~~sY~~L~~~L  140 (215)
T PF02309_consen   73 DSSSSSPPASKAQVVGWPPVRSFRKNSLSEKQ------------SSSSRSYVKVNMDGVPIGRKVDLSAYSSYEELSSAL  140 (215)
T ss_dssp             -------------BTTBS----S---------------------------------------------------------
T ss_pred             ccccCCCCcccccccCCCcccccccccccccc------------cccCCceeEEEecCcccceecCHHHhhCHHHHHHHH
Confidence            1122 234478999999999999999887211            112379999999999999999999999999999999


Q ss_pred             HHhhcccccccc
Q 030803          159 GKMFSSFTIGTY  170 (171)
Q Consensus       159 e~MF~~f~ig~~  170 (171)
                      ++||.+|+|++|
T Consensus       141 ~~MF~~~~i~~~  152 (215)
T PF02309_consen  141 EKMFSCFSIEQC  152 (215)
T ss_dssp             ------------
T ss_pred             HHhcCCCCcccc
Confidence            999999998855

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00