Citrus Sinensis ID: 030808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCIPETQAPI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHccccHHcccccccccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHcccHHHHHHHHHHHccccHHHHHHHcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHcccccHHcccccccccHHHHHHcccccccccccEHHEHcccHcccccccccccccHHHHHHcHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHcccccccccc
Coil and Loop (DISEMBL)
MDSDFWTSRLAAAKRQYTLQQhhhqssqidrlsiddfeveddvrpdfpcpycyedfdiaslcshledehsceskvtvcpicsVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHIcgkqgtafwhqcipetqapi
Flexible Loop (DISEMBL)
MDSDFWTSRLAAAKRQYTLqqhhhqssqidrlsIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLqhghlfklqrrRRLRRVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCIPETQAPI
Low Complexity Region (SEG)
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQrrrrlrrVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCIPETQAPI
Disordered region (IsUnstruct)
******************************RLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCI*******
Disordered Region (DISOPRED)
***DFWTSRLA***********************DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLF*************************LREAHLQVLLGVLKILVQKVLH***********************
Disordered Region (DISEMBL)
MDSDFWTSRLAAAKR**************DRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHL*********VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCIPETQAPI
Disordered Region (DISPRO)
****FWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRL*****PSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCIPETQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGVLKILVQKVLHQHICGKQGTAFWHQCIPETQAPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q688X9	226	Protein DEHYDRATION-INDUC	yes	no	0.760	0.575	0.620	5e-43
Q6H6E6	245	Protein DEHYDRATION-INDUC	no	no	0.801	0.559	0.6	3e-42
Q5QMP3	246	Protein DEHYDRATION-INDUC	no	no	0.789	0.548	0.519	3e-32
Q6NM26	222	Protein DEHYDRATION-INDUC	yes	no	0.766	0.590	0.441	5e-28
Q84J70	223	Protein DEHYDRATION-INDUC	no	no	0.771	0.591	0.423	4e-27
Q39083	206	Protein DEHYDRATION-INDUC	no	no	0.608	0.504	0.5	1e-25
Q9FJ17	211	Protein DEHYDRATION-INDUC	no	no	0.608	0.492	0.5	4e-24
Q5W794	233	Protein DEHYDRATION-INDUC	no	no	0.532	0.390	0.505	7e-22
Q8VXU6	224	Protein DEHYDRATION-INDUC	no	no	0.584	0.446	0.509	3e-20
O04259	214	Protein DEHYDRATION-INDUC	no	no	0.391	0.313	0.417	1e-12

>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica GN=DI19-1 PE=2 SV=1

 Score =  173 bits (438), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 85/137 (62%), Positives = 103/137 (75%), Gaps = 7/137 (5%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+ W SRLAAAKR Y  Q  H      DR  +++ +++++VRP+F CPYCYED D+ S
Sbjct: 1   MDSEHWISRLAAAKRFYAAQLGH-----ADRAGMEEVDMDEEVRPEFACPYCYEDHDVVS 55

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC+HLE+EH  E     CPICS K+A+DML+HIT+QHG+LFK   RRRLRR  IP SQAL
Sbjct: 56  LCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGSQAL 113

Query: 121 SLLGRDLREAHLQVLLG 137
           SLL RDLREAHLQVLLG
Sbjct: 114 SLLSRDLREAHLQVLLG 130

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica GN=DI19-4 PE=2 SV=1

 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 90/150 (60%), Positives = 108/150 (72%), Gaps = 13/150 (8%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQ-------------IDRLSIDDFEVEDDVRPDF 47
           MDSD W SRL AAKRQY LQ+  +                 +DR   DD E ED+VRPDF
Sbjct: 1   MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPDF 60

Query: 48  PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRR 107
           PCPYCYED DI SLC+HLEDEH  ESKV  CP+CS ++++D+L HITLQH +LF+LQR  
Sbjct: 61  PCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHH 120

Query: 108 RLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
           RLRRVA+PS+ ALSL GRDL+E +L+VLLG
Sbjct: 121 RLRRVAVPSNHALSLGGRDLQETYLKVLLG 150

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp. japonica GN=DI19-3 PE=2 SV=1

 Score =  137 bits (345), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/152 (51%), Positives = 93/152 (61%), Gaps = 17/152 (11%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVR---------------P 45
           MDS+ W S LAAAKR Y  Q  H        +   + E+EDD                 P
Sbjct: 1   MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWP 60

Query: 46  DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQR 105
           D  CPYCYED DIASLC+HLE++H  E   + CPIC  K+ RDML+HIT+QHG+LFK   
Sbjct: 61  DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFK--S 118

Query: 106 RRRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
            RR+RR  IP SQALSLL RDLR+A LQ LLG
Sbjct: 119 GRRMRRFDIPESQALSLLSRDLRDAQLQALLG 150

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana GN=DI19-6 PE=1 SV=1

 Score =  123 bits (309), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 89/136 (65%), Gaps = 5/136 (3%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI S
Sbjct: 1   MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC H++++H  ++K  VCPIC+VKV+ DM++HITLQH ++FK+ R+R+ RR    S   L
Sbjct: 58  LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQS--ML 115

Query: 121 SLLGRDLREAHLQVLL 136
           S+L R+  + + Q L 
Sbjct: 116 SILKREFPDGNFQSLF 131

Arabidopsis thaliana (taxid: 3702)

>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana GN=DI19-3 PE=1 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 5/137 (3%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI S
Sbjct: 1   MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LC H++++H  E+K  VCP+C+V+V  DM++HITLQH ++FK+ R+R+ RR    S   L
Sbjct: 58  LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115

Query: 121 SLLGRDLREAHLQVLLG 137
           S+L R+  + + Q L G
Sbjct: 116 SILRREFPDGNFQSLFG 132

Arabidopsis thaliana (taxid: 3702)

>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1 PE=1 SV=2

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 76/106 (71%), Gaps = 2/106 (1%)

Query: 32  LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
           +  ++ + +DD + +F CP+C E +DI  LC H++DEH+ ESK  VCP+CS+KV  D+++
Sbjct: 20  MGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVA 79

Query: 92  HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
           HITL HG LFKLQR+R+ R+    S+  LSLL ++LRE  LQ LLG
Sbjct: 80  HITLHHGSLFKLQRKRKSRKSGTNST--LSLLRKELREGDLQRLLG 123

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana GN=DI19-7 PE=1 SV=2

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 2/106 (1%)

Query: 32  LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
           L + D E EDD++ +F CP+C ++FDI  LC H++  H  E+K  VCP+C+ KV  D++ 
Sbjct: 28  LYLGDVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVG 87

Query: 92  HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
           HIT QHG++FK+QRRRRLR+    SS  L+ L ++LREA+LQ L G
Sbjct: 88  HITTQHGNVFKVQRRRRLRKGGY-SSTYLT-LKKELREANLQSLGG 131

Involved in both red and blue light signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp. japonica GN=DI19-2 PE=2 SV=2

 Score =  103 bits (256), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 66/91 (72%)

Query: 47  FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
           + CP+C EDFD  + C H++DEH+ E+K  VCPIC+ +V  D++ H+T+QHG  FK+QRR
Sbjct: 54  YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113

Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLG 137
           RR+R+++  S   LSLL +DLR+  LQ  LG
Sbjct: 114 RRVRKISSGSHSLLSLLRKDLRDGSLQSFLG 144

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana GN=DI19-4 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 35  DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHIT 94
           +D E EDD++ +F CP+C EDFDI  LC H+++EH  E+K  VCP+C+ +V  D++ HIT
Sbjct: 35  EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94

Query: 95  LQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLL 136
            QH + FK+QRRRRLRR    S+     L ++LREA+LQ LL
Sbjct: 95  TQHANFFKVQRRRRLRRGGYSSTYL--ALKKELREANLQSLL 134

Arabidopsis thaliana (taxid: 3702)

>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana GN=DI19-5 PE=1 SV=2

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 47/67 (70%)

Query: 36  DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
           +FE +D++  D+PCP+C +D+D+  LC H+++EH  ++   +CP+CS +V   M+ HIT 
Sbjct: 32  EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91

Query: 96  QHGHLFK 102
           QH  +FK
Sbjct: 92  QHRDVFK 98

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
225443618	231	PREDICTED: protein DEHYDRATION-INDUCED 1	0.795	0.588	0.919	2e-64
255536745	231	conserved hypothetical protein [Ricinus	0.795	0.588	0.919	5e-64
356521402	233	PREDICTED: protein DEHYDRATION-INDUCED 1	0.777	0.570	0.888	2e-59
217075142	234	unknown [Medicago truncatula] gi|3884911	0.795	0.581	0.839	1e-58
388508052	176	unknown [Medicago truncatula]	0.795	0.772	0.839	7e-58
356548672	237	PREDICTED: protein DEHYDRATION-INDUCED 1	0.789	0.569	0.875	1e-56
449433818	199	PREDICTED: protein DEHYDRATION-INDUCED 1	0.795	0.683	0.802	7e-56
118483033	180	unknown [Populus trichocarpa]	0.795	0.755	0.861	2e-54
192910804	230	fiber protein Fb2 [Elaeis guineensis]	0.789	0.586	0.795	7e-52
294463922	229	unknown [Picea sitchensis]	0.783	0.585	0.737	3e-50

>gi|225443618|ref|XP_002279435.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Vitis vinifera]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 126/137 (91%), Positives = 132/137 (96%), Gaps = 1/137 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           M++DFW SRLAAAKRQY LQ HHH SSQ+DRLSIDDFEVED+ RPDFPCPYCYED+DIAS
Sbjct: 1   MNTDFWASRLAAAKRQYALQ-HHHNSSQLDRLSIDDFEVEDEARPDFPCPYCYEDYDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL
Sbjct: 60  LCSHLEDEHSCESRVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 119

Query: 121 SLLGRDLREAHLQVLLG 137
           SLLGRDLREAHLQVLLG
Sbjct: 120 SLLGRDLREAHLQVLLG 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536745|ref|XP_002509439.1| conserved hypothetical protein [Ricinus communis] gi|223549338|gb|EEF50826.1| conserved hypothetical protein [Ricinus communis]

 Score =  248 bits (634), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 126/137 (91%), Positives = 133/137 (97%), Gaps = 1/137 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSR+AAAKRQYTLQ HHHQS  +DRL+IDDFEVED+VRPDFPCPYCYEDFDI S
Sbjct: 1   MDSDFWTSRIAAAKRQYTLQ-HHHQSYHLDRLNIDDFEVEDEVRPDFPCPYCYEDFDITS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIP+SQAL
Sbjct: 60  LCSHLEDEHSCESRVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLG 137
           SLLGRDLREAHLQ+LLG
Sbjct: 120 SLLGRDLREAHLQMLLG 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521402|ref|XP_003529345.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Glycine max]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 119/134 (88%), Positives = 128/134 (95%), Gaps = 1/134 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQYTLQ HHH +S +DRL IDDF+VE++VRPDFPCPYCYEDFDIAS
Sbjct: 1   MDSDFWTSRLAAAKRQYTLQ-HHHPNSHLDRLGIDDFDVEEEVRPDFPCPYCYEDFDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           L SHLEDEHSCES+VT+CPICSVKVARDML+HITLQHGHLFKLQRRRRLRRVAIP+SQ L
Sbjct: 60  LSSHLEDEHSCESRVTICPICSVKVARDMLNHITLQHGHLFKLQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQV 134
           SLLGRDLREAHLQV
Sbjct: 120 SLLGRDLREAHLQV 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075142|gb|ACJ85931.1| unknown [Medicago truncatula] gi|388491118|gb|AFK33625.1| unknown [Medicago truncatula]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 128/137 (93%), Gaps = 1/137 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+FWTSRLAAAKR Y LQ H+H +S +DRL IDDF+VE++VRPDFPCPYCYE+FDI S
Sbjct: 1   MDSEFWTSRLAAAKRHYALQ-HNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CP+CSVKVARDMLSHITLQHGHLFK+QRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG 137
           SLLGRDLREAHLQVLL 
Sbjct: 120 SLLGRDLREAHLQVLLN 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508052|gb|AFK42092.1| unknown [Medicago truncatula]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 115/137 (83%), Positives = 128/137 (93%), Gaps = 1/137 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDS+FWTSRLAAAKR Y LQ H+H +S +DRL IDDF+VE++VRPDFPCPYCYE+FDI S
Sbjct: 1   MDSEFWTSRLAAAKRHYALQ-HNHPTSHLDRLGIDDFDVEEEVRPDFPCPYCYEEFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CP+CSVKVARDMLSHITLQHGHLFK+QRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPVCSVKVARDMLSHITLQHGHLFKIQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLLG 137
           SLLGRDLREAHLQVLL 
Sbjct: 120 SLLGRDLREAHLQVLLN 136

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548672|ref|XP_003542724.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Glycine max]

 Score =  224 bits (571), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 129/136 (94%), Gaps = 1/136 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQYTLQ HHH +S +DRL IDDF++E++VRPDFPCPYCYEDFDIAS
Sbjct: 1   MDSDFWTSRLAAAKRQYTLQ-HHHPNSHLDRLGIDDFDMEEEVRPDFPCPYCYEDFDIAS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCES+VT+CPICS KVAR+MLSHITLQHGHL KLQRRRRLRRVAIP+SQ L
Sbjct: 60  LCSHLEDEHSCESRVTICPICSDKVARNMLSHITLQHGHLLKLQRRRRLRRVAIPNSQTL 119

Query: 121 SLLGRDLREAHLQVLL 136
           SLLGRDLREAHLQVLL
Sbjct: 120 SLLGRDLREAHLQVLL 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433818|ref|XP_004134694.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Cucumis sativus] gi|449529572|ref|XP_004171772.1| PREDICTED: protein DEHYDRATION-INDUCED 19-like [Cucumis sativus]

 Score =  221 bits (564), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 124/137 (90%), Gaps = 1/137 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSDFWTSRLAAAKRQY LQ HHHQ+S +D L IDD E++DD RP FPCP+CYE+FD+ S
Sbjct: 1   MDSDFWTSRLAAAKRQYMLQ-HHHQASNLDLLGIDDLEMDDDTRPHFPCPFCYENFDVMS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHSCE++VTVCPICSVKV  DMLSHITL HGHL+KLQRRRRLR+++IP+SQAL
Sbjct: 60  LCSHLEDEHSCETRVTVCPICSVKVMGDMLSHITLHHGHLYKLQRRRRLRKISIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLG 137
           SLL RDLREAHLQVLLG
Sbjct: 120 SLLSRDLREAHLQVLLG 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483033|gb|ABK93427.1| unknown [Populus trichocarpa]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 126/137 (91%), Gaps = 1/137 (0%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           M S+FWTSR+AAAK+QY  Q HH QSS  DR +IDDFEVE++VRPDFPCPYCYEDFDI S
Sbjct: 1   MTSNFWTSRIAAAKQQYASQHHH-QSSHQDRFNIDDFEVEEEVRPDFPCPYCYEDFDIGS 59

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEHS ESKV VCPICSVKVA+DMLSHITLQHGHLFKLQRRRRLRRVAIP+SQAL
Sbjct: 60  LCSHLEDEHSYESKVAVCPICSVKVAQDMLSHITLQHGHLFKLQRRRRLRRVAIPNSQAL 119

Query: 121 SLLGRDLREAHLQVLLG 137
           SLLGRDLREAHLQVLLG
Sbjct: 120 SLLGRDLREAHLQVLLG 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910804|gb|ACF06510.1| fiber protein Fb2 [Elaeis guineensis]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 119/137 (86%), Gaps = 2/137 (1%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MDSD W SRLAAAKR Y+LQQ   Q+ Q DRL IDDFE+E++VR DFPCPYCYED DI S
Sbjct: 1   MDSDLWISRLAAAKRHYSLQQP--QNPQSDRLGIDDFEMEEEVRLDFPCPYCYEDHDITS 58

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEH+ ESK  VCPICSVKVARDML+HIT+QHGH+FKLQRRRRLRR  IPSSQ L
Sbjct: 59  LCSHLEDEHAFESKAAVCPICSVKVARDMLNHITIQHGHIFKLQRRRRLRRFPIPSSQTL 118

Query: 121 SLLGRDLREAHLQVLLG 137
           SLLGRDLREAHLQ+LLG
Sbjct: 119 SLLGRDLREAHLQLLLG 135

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294463922|gb|ADE77482.1| unknown [Picea sitchensis]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 101/137 (73%), Positives = 118/137 (86%), Gaps = 3/137 (2%)

Query: 1   MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
           MD++ W +RLAAAKRQ++L   HH   Q+DRLSIDDFEV++DVRPDF CPYCY+D+DIAS
Sbjct: 1   MDAELWAARLAAAKRQHSL---HHSQPQLDRLSIDDFEVDEDVRPDFSCPYCYDDYDIAS 57

Query: 61  LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
           LCSHLEDEH  ESK  VCP+C++KV RDML+HIT QHGHLFK+QRRRRLRRVA+P S  L
Sbjct: 58  LCSHLEDEHPFESKAAVCPVCTLKVGRDMLNHITTQHGHLFKIQRRRRLRRVAVPHSSTL 117

Query: 121 SLLGRDLREAHLQVLLG 137
           SLL R+LREAHLQVLLG
Sbjct: 118 SLLSRELREAHLQVLLG 134

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2148528	222	AT5G26990 [Arabidopsis thalian	0.760	0.585	0.414	1.6e-24
TAIR|locus:2078062	223	AT3G05700 [Arabidopsis thalian	0.771	0.591	0.394	1.4e-23
TAIR|locus:2155934	211	HRB1 "HYPERSENSITIVE TO RED AN	0.766	0.620	0.379	5.7e-20
TAIR|locus:2196125	221	AT1G02750 [Arabidopsis thalian	0.584	0.452	0.346	3.7e-16
TAIR|locus:2137819	228	AT4G02200 [Arabidopsis thalian	0.391	0.293	0.370	9.1e-13
TAIR|locus:2083363	234	AT3G06760 [Arabidopsis thalian	0.233	0.170	0.525	2e-12
UNIPROTKB|I3LV30	181	RNF114 "RING finger protein 11	0.228	0.215	0.5	0.00019
UNIPROTKB|Q4U5R4	230	RNF114 "RING finger protein 11	0.228	0.169	0.5	0.00022
MGI|MGI:1933159	229	Rnf114 "ring finger protein 11	0.228	0.170	0.5	0.0003
RGD|1303139	229	Rnf114 "ring finger protein 11	0.228	0.170	0.5	0.0003

TAIR|locus:2148528 AT5G26990 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 56/135 (41%), Positives = 83/135 (61%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDSD W+ RLA+A R+Y L      S   + L  ++ E EDD R ++ CP+C + FDI S
Sbjct:     1 MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++++H  ++K  VCPIC+VKV+ DM++HITLQH ++FK+            S   L
Sbjct:    58 LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQSM--L 115

Query:   121 SLLGRDLREAHLQVL 135
             S+L R+  + + Q L
Sbjct:   116 SILKREFPDGNFQSL 130

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2078062 AT3G05700 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 54/137 (39%), Positives = 82/137 (59%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDSD W+ RLA+A R+Y L      S     L  ++ + E++ R +F CP+C + FDI S
Sbjct:     1 MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++++H  E+K  VCP+C+V+V  DM++HITLQH ++FK+            S   L
Sbjct:    58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115

Query:   121 SLLGRDLREAHLQVLLG 137
             S+L R+  + + Q L G
Sbjct:   116 SILRREFPDGNFQSLFG 132

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2155934 HRB1 "HYPERSENSITIVE TO RED AND BLUE" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 52/137 (37%), Positives = 80/137 (58%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
             MDS+ W +         + +++  +S     L + D E EDD++ +F CP+C ++FDI  
Sbjct:     1 MDSNSWINCPPVFSSSPSSRRYQSRSD----LYLGDVEGEDDLKAEFMCPFCADEFDIVG 56

Query:    61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQXXXXXXXVAIPSSQAL 120
             LC H++  H  E+K  VCP+C+ KV  D++ HIT QHG++FK+Q           SS  L
Sbjct:    57 LCCHIDVNHPVEAKNGVCPVCTKKVGLDIVGHITTQHGNVFKVQRRRRLRKGGY-SSTYL 115

Query:   121 SLLGRDLREAHLQVLLG 137
             +L  ++LREA+LQ L G
Sbjct:   116 TLK-KELREANLQSLGG 131

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

TAIR|locus:2196125 AT1G02750 [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 36/104 (34%), Positives = 59/104 (56%)

Query:     1 MDSDFWTSRLAAAKRQYTLQQH-HHQSSQIDRLSIDDFE-VEDDVRPDFPCPYCYEDFDI 58
             M+ D W    + + R Y  +    +QS     L  ++FE V+DD+  ++PCP+C  D+D+
Sbjct:     1 MEDDMWCVSSSGSSRSYRSETAAKYQSGPYQDL--EEFEEVDDDIAVEYPCPFCASDYDL 58

Query:    59 ASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFK 102
               LC H+++EH  E+   +CP+CS +V   M+ HIT  H  + K
Sbjct:    59 VELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHHRDVLK 102

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2137819 AT4G02200 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 30/81 (37%), Positives = 50/81 (61%)

Query:    36 DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEH-------------SCESKV-TVCPIC 81
             +FE +D++  D+PCP+C +D+D+  LC H+++EH             SC+ ++  +CP+C
Sbjct:    32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGFLHEAVSCKFRLFIICPVC 91

Query:    82 SVKVARDMLSHITLQHGHLFK 102
             S +V   M+ HIT QH  +FK
Sbjct:    92 SRRVKMHMVDHITTQHRDVFK 112

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009414 "response to water deprivation" evidence=ISS

TAIR|locus:2083363 AT3G06760 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 2.0e-12, Sum P(2) = 2.0e-12
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query:    35 DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESK 74
             +D E EDD++ +F CP+C EDFDI  LC H+++EH  E+K
Sbjct:    35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAK 74

GO:0005634 "nucleus" evidence=ISM

GO:0009414 "response to water deprivation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

UNIPROTKB|I3LV30 RNF114 "RING finger protein 114" [Sus scrofa (taxid:9823)]

 Score = 104 (41.7 bits), Expect = 0.00019, P = 0.00019
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:    91 RYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 130

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q4U5R4 RNF114 "RING finger protein 114" [Bos taurus (taxid:9913)]

 Score = 106 (42.4 bits), Expect = 0.00022, P = 0.00022
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:   140 RYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICA 179

GO:0005622 "intracellular" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1933159 Rnf114 "ring finger protein 114" [Mus musculus (taxid:10090)]

 Score = 105 (42.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:   139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178

GO:0005622 "intracellular" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1303139 Rnf114 "ring finger protein 114" [Rattus norvegicus (taxid:10116)]

 Score = 105 (42.0 bits), Expect = 0.00030, P = 0.00030
 Identities = 20/40 (50%), Positives = 25/40 (62%)

Query:    44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
             R  FPCPYC E +FD   L  H +  HS ++K  VCPIC+
Sbjct:   139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178

GO:0005622 "intracellular" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam05605	209	pfam05605, Di19, Drought induced 19 protein (Di19)	8e-53

>gnl|CDD|218654 pfam05605, Di19, Drought induced 19 protein (Di19)

 Score =  166 bits (423), Expect = 8e-53
 Identities = 69/128 (53%), Positives = 89/128 (69%), Gaps = 6/128 (4%)

Query: 10  LAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEH 69
            A+A   Y            D    +D E ED+VR +FPCP+CYEDFDI SLC H+++EH
Sbjct: 1   HASASASYQRALPSRS----DLYLFEDIEGEDEVREEFPCPFCYEDFDIVSLCCHIDEEH 56

Query: 70  SCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLRE 129
             E+K  VCP+C+ +V +DM++HIT+QHGHLFK+QRRRRLRR    SS ALSLL R+LR+
Sbjct: 57  PFEAKNGVCPVCADRVGKDMVAHITVQHGHLFKMQRRRRLRR--GGSSSALSLLKRELRD 114

Query: 130 AHLQVLLG 137
            +LQ LLG
Sbjct: 115 GNLQSLLG 122

This family consists of several drought induced 19 (Di19) like proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought. The precise function of Di19 is unknown. Length = 209

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	99.81
PF14571	105	Di19_C: Stress-induced protein Di19, C-terminal	99.15
KOG1280	381	consensus Uncharacterized conserved protein contai	98.76
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	94.71
KOG2923	67	consensus Uncharacterized conserved protein [Funct	94.55
COG5216	67	Uncharacterized conserved protein [Function unknow	94.14
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	93.5
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	92.85
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	92.51
PLN03086	567	PRLI-interacting factor K; Provisional	92.37
COG5236	493	Uncharacterized conserved protein, contains RING Z	91.79
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	90.17
smart00531	147	TFIIE Transcription initiation factor IIE.	89.5
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	88.44
PHA00732	79	hypothetical protein	87.75
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	87.48
PHA00733	128	hypothetical protein	87.34
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	86.84
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	85.11
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	84.86
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	84.61
PRK09710	64	lar restriction alleviation and modification prote	84.33
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	83.97
PHA02768	55	hypothetical protein; Provisional	83.49
PLN03086	567	PRLI-interacting factor K; Provisional	83.04
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	81.99
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	81.1

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=99.81  E-value=1.8e-20  Score=125.53  Aligned_cols=54  Identities=48%  Similarity=0.938  Sum_probs=52.1

Q ss_pred             CcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCccccchhhHHhhhhhccc
Q 030808           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~s~d~l~HL~~qH~   98 (171)
                      ++|+||||+++||+.+|++|+.++|+.+.++||||||+.+++.||++||+.+|+
T Consensus         1 ~~f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~~l~~Hl~~~H~   54 (54)
T PF05605_consen    1 DSFTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICSSRVTDNLIRHLNSQHR   54 (54)
T ss_pred             CCcCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCchhhhhhHHHHHHHHhcC
Confidence            379999999999999999999999999999999999999999999999999996

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF14571 Di19_C: Stress-induced protein Di19, C-terminal

Probab=99.15  E-value=9.5e-12  Score=94.62  Aligned_cols=37  Identities=41%  Similarity=0.533  Sum_probs=34.2

Q ss_pred             hHhhhhhhhhhhhhhHHhcCc--------chhhhhhhhhhhcCCc
Q 030808          119 ALSLLGRDLREAHLQVLLGVL--------KILVQKVLHQHICGKQ  155 (171)
Q Consensus       119 ~ls~L~k~lre~~lq~llgg~--------s~~~~~~~~~~~~~~~  155 (171)
                      |||+|||||||||||+||||+        ..+.||+|++||||--
T Consensus         1 tlsll~kelre~~LQsllGgs~~~~~~ssn~apDPLLSSFI~n~~   45 (105)
T PF14571_consen    1 TLSLLRKELREGYLQSLLGGSRSSSSSSSNSAPDPLLSSFICNFP   45 (105)
T ss_pred             CcchhhhhhhhhhhhhhcCCCcCCCCCCCCCCCcHHHHHHhcCCC
Confidence            689999999999999999998        5788999999999864

>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]

Probab=98.76  E-value=5.6e-09  Score=94.23  Aligned_cols=72  Identities=21%  Similarity=0.433  Sum_probs=59.3

Q ss_pred             ccchhhc-cCCCcCCCCCCCCCcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc---------hhhHHhhh
Q 030808           25 QSSQIDR-LSIDDFEVEDDVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV---------ARDMLSHI   93 (171)
Q Consensus        25 ~~s~~~~-~g~e~~~~ddd~r~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~---------s~d~l~HL   93 (171)
                      .+-||++ ||+|-+..+++.  .|+||||++ +|++..+.+|+..+|+..+..+|||||++.+         ..+...|+
T Consensus        59 ~~~dfeL~f~Ge~i~~y~~q--SftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~~~~~qp~~~~~~~~~~~~~  136 (381)
T KOG1280|consen   59 SRVDFELYFGGEPISHYDPQ--SFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAANPEMQPIHSKETENLSVHW  136 (381)
T ss_pred             eccceeeEecCccccccccc--cccCCcccccccchhHHHHHhhhcCcccCcceeeeccccCcccCchhhhhhhhhhhhh
Confidence            3457777 788888776655  999999999 9999999999999999999999999999985         44555666


Q ss_pred             hhccc
Q 030808           94 TLQHG   98 (171)
Q Consensus        94 ~~qH~   98 (171)
                      +..|.
T Consensus       137 ~~~a~  141 (381)
T KOG1280|consen  137 TEIAL  141 (381)
T ss_pred             hhhcc
Confidence            55554

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=94.71  E-value=0.025  Score=30.26  Aligned_cols=23  Identities=30%  Similarity=0.631  Sum_probs=17.6

Q ss_pred             ccCCCCCC-CCCHHHHHHhhhhhh
Q 030808           47 FPCPYCYE-DFDIASLCSHLEDEH   69 (171)
Q Consensus        47 F~CPfC~e-~fD~~~L~~H~~eeH   69 (171)
                      |.||+|+. --+..+|..|+...|
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            68999999 777888999988776

...

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.55  E-value=0.016  Score=41.68  Aligned_cols=45  Identities=33%  Similarity=0.771  Sum_probs=30.7

Q ss_pred             cCCCcCC-CCCCCCCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           32 LSIDDFE-VEDDVRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        32 ~g~e~~~-~ddd~r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .-++|++ .+|...-+|+|| ||.  .+....|.        ..-..++||-|+-.+
T Consensus         7 Veiedfe~~~e~~~y~yPCp-CGDrf~It~edL~--------~ge~Va~CpsCSL~I   54 (67)
T KOG2923|consen    7 VEIEDFEFDEENQTYYYPCP-CGDRFQITLEDLE--------NGEDVARCPSCSLII   54 (67)
T ss_pred             EEeecceeccCCCeEEcCCC-CCCeeeecHHHHh--------CCCeeecCCCceEEE
Confidence            4567777 444556789999 888  44444443        345678999999875

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=94.14  E-value=0.021  Score=40.82  Aligned_cols=45  Identities=31%  Similarity=0.775  Sum_probs=29.5

Q ss_pred             cCCCcCCCC-CCCCCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           32 LSIDDFEVE-DDVRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        32 ~g~e~~~~d-dd~r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +.++|++-+ +++.-+|+|| ||.  ++....|.        ..-..++||-|+-++
T Consensus         7 ieiedftf~~e~~~ftyPCP-CGDRFeIsLeDl~--------~GE~VArCPSCSLiv   54 (67)
T COG5216           7 IEIEDFTFSREEKTFTYPCP-CGDRFEISLEDLR--------NGEVVARCPSCSLIV   54 (67)
T ss_pred             eEeeeeEEcCCCceEEecCC-CCCEeEEEHHHhh--------CCceEEEcCCceEEE
Confidence            334444322 3456799999 777  55555553        345678999999886

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=93.50  E-value=0.068  Score=31.08  Aligned_cols=21  Identities=33%  Similarity=0.668  Sum_probs=18.9

Q ss_pred             cccCCCCCCCCCHHHHHHhhh
Q 030808           46 DFPCPYCYEDFDIASLCSHLE   66 (171)
Q Consensus        46 ~F~CPfC~e~fD~~~L~~H~~   66 (171)
                      ..+||+|+..|....|-.|..
T Consensus         2 l~~C~~CgR~F~~~~l~~H~~   22 (25)
T PF13913_consen    2 LVPCPICGRKFNPDRLEKHEK   22 (25)
T ss_pred             CCcCCCCCCEECHHHHHHHHH
Confidence            468999999999999999964

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.85  E-value=0.056  Score=37.53  Aligned_cols=27  Identities=26%  Similarity=0.738  Sum_probs=18.8

Q ss_pred             CCccccCCccccc--hhhHHhhhhhcccc
Q 030808           73 SKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        73 ~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      .....||+|.+.+  ++|+-+||-+.|+.
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             CCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            4467899999886  78999999999964

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.51  E-value=0.079  Score=28.93  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=16.5

Q ss_pred             ccCCCCCC-CCCHHHHHHhhhh
Q 030808           47 FPCPYCYE-DFDIASLCSHLED   67 (171)
Q Consensus        47 F~CPfC~e-~fD~~~L~~H~~e   67 (171)
                      |.||.|++ =-+...|..|+..
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            67899988 5567788888876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PLN03086 PRLI-interacting factor K; Provisional

Probab=92.37  E-value=0.16  Score=48.98  Aligned_cols=48  Identities=23%  Similarity=0.501  Sum_probs=38.1

Q ss_pred             CCcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCcccc-chhhHHhhhhhc
Q 030808           44 RPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK-VARDMLSHITLQ   96 (171)
Q Consensus        44 r~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~-~s~d~l~HL~~q   96 (171)
                      ..-+.||+|++.|....|-.|....|    +.+.|| |... ...++..|++..
T Consensus       451 ~~H~~C~~Cgk~f~~s~LekH~~~~H----kpv~Cp-Cg~~~~R~~L~~H~~th  499 (567)
T PLN03086        451 KNHVHCEKCGQAFQQGEMEKHMKVFH----EPLQCP-CGVVLEKEQMVQHQAST  499 (567)
T ss_pred             ccCccCCCCCCccchHHHHHHHHhcC----CCccCC-CCCCcchhHHHhhhhcc
Confidence            34578999999999999999999866    678999 9644 456888887643

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.79  E-value=0.12  Score=48.01  Aligned_cols=89  Identities=25%  Similarity=0.343  Sum_probs=60.1

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCcccc--------------------------------------c
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK--------------------------------------V   85 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~--------------------------------------~   85 (171)
                      --=.|-||.. =+|-.+|..||...|-      .|-||..+                                      +
T Consensus       219 GHP~C~FC~~~FYdDDEL~~HcR~~HE------~ChICD~v~p~~~QYFK~Y~~Le~HF~~~hy~ct~qtc~~~k~~vf~  292 (493)
T COG5236         219 GHPLCIFCKIYFYDDDELRRHCRLRHE------ACHICDMVGPIRYQYFKSYEDLEAHFRNAHYCCTFQTCRVGKCYVFP  292 (493)
T ss_pred             CCchhhhccceecChHHHHHHHHhhhh------hhhhhhccCccchhhhhCHHHHHHHhhcCceEEEEEEEecCcEEEec
Confidence            3457999999 8899999999999986      45555443                                      1


Q ss_pred             -hhhHHhhhhhcccchhhhhhhcccccCCCCCchhHhhhhhhhhhhhhhHH--hcCcchh
Q 030808           86 -ARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVL--LGVLKIL  142 (171)
Q Consensus        86 -s~d~l~HL~~qH~~~~k~~r~rr~rr~~~ps~s~ls~L~k~lre~~lq~l--lgg~s~~  142 (171)
                       -..++.||+..|+...+.+-+-+-.+-++|-+.-   ..++-.++.|-++  +||+++.
T Consensus       293 ~~~el~~h~~~~h~~~~~~~~~~~~~~~s~~i~~p---~~r~~~~~~~~~i~~~~g~~~~  349 (493)
T COG5236         293 YHTELLEHLTRFHKVNARLSEIPRPGRCSIPVMDP---FKRKKAPARVSVIDPSGGNARA  349 (493)
T ss_pred             cHHHHHHHHHHHhhcccccCcCCCCccccccccch---hhhccCcccCccccCCCCCCCC
Confidence             3468999999999998765443333334443222   3444446666666  6777654

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=90.17  E-value=0.16  Score=35.19  Aligned_cols=48  Identities=21%  Similarity=0.529  Sum_probs=15.1

Q ss_pred             CCCCCC-CCCHHHHHHhhhhhhcCCCC---------------------ccccCCccccc--hhhHHhhhhhc
Q 030808           49 CPYCYE-DFDIASLCSHLEDEHSCESK---------------------VTVCPICSVKV--ARDMLSHITLQ   96 (171)
Q Consensus        49 CPfC~e-~fD~~~L~~H~~eeH~~e~k---------------------~vVCPVCaa~~--s~d~l~HL~~q   96 (171)
                      |+||+. -=+...|..|+...|.+...                     .-.|++|....  ...+..||...
T Consensus         2 C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~   73 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK   73 (100)
T ss_dssp             -----------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence            999999 45688999999999986322                     13499998875  56888999754

>smart00531 TFIIE Transcription initiation factor IIE

Probab=89.50  E-value=0.29  Score=38.60  Aligned_cols=39  Identities=18%  Similarity=0.516  Sum_probs=27.0

Q ss_pred             CCCCcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           42 DVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        42 d~r~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .....|.||.|+..|+..+-.....     .....+||.|-..+
T Consensus        95 ~~~~~Y~Cp~C~~~y~~~ea~~~~d-----~~~~f~Cp~Cg~~l  133 (147)
T smart00531       95 TNNAYYKCPNCQSKYTFLEANQLLD-----MDGTFTCPRCGEEL  133 (147)
T ss_pred             cCCcEEECcCCCCEeeHHHHHHhcC-----CCCcEECCCCCCEE
Confidence            4567999999999666544333222     13458999998876

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=88.44  E-value=0.32  Score=26.96  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=16.7

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhc
Q 030808           47 FPCPYCYEDFDIASLCSHLEDEHS   70 (171)
Q Consensus        47 F~CPfC~e~fD~~~L~~H~~eeH~   70 (171)
                      |.||+|.-.-....|..|++..|+
T Consensus         1 y~C~~C~y~t~~~~l~~H~~~~H~   24 (24)
T PF13909_consen    1 YKCPHCSYSTSKSNLKRHLKRHHP   24 (24)
T ss_dssp             EE-SSSS-EESHHHHHHHHHHHHS
T ss_pred             CCCCCCCCcCCHHHHHHHHHhhCc
Confidence            679999872238889999888774

>PHA00732 hypothetical protein

Probab=87.75  E-value=0.62  Score=33.84  Aligned_cols=42  Identities=29%  Similarity=0.652  Sum_probs=31.6

Q ss_pred             ccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccchhhHHhhh
Q 030808           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHI   93 (171)
Q Consensus        47 F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~s~d~l~HL   93 (171)
                      |.|+.|++ --+...|..|....|..    ..|++|...-. ++..|+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~----~~C~~CgKsF~-~l~~H~   44 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRNHTL----TKCPVCNKSYR-RLNQHF   44 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcccCC----CccCCCCCEeC-Chhhhh
Confidence            78999999 44788899998866653    26999977644 466666

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.48  E-value=0.19  Score=32.02  Aligned_cols=34  Identities=26%  Similarity=0.616  Sum_probs=21.1

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCccccchhhHH
Q 030808           47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDML   90 (171)
Q Consensus        47 F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~s~d~l   90 (171)
                      |.||.|+... +      ..   -.+....||+.|-..+..+.+
T Consensus         1 m~Cp~Cg~~~-~------~~---D~~~g~~vC~~CG~Vl~e~~i   34 (43)
T PF08271_consen    1 MKCPNCGSKE-I------VF---DPERGELVCPNCGLVLEENII   34 (43)
T ss_dssp             ESBTTTSSSE-E------EE---ETTTTEEEETTT-BBEE-TTB
T ss_pred             CCCcCCcCCc-e------EE---cCCCCeEECCCCCCEeecccc
Confidence            6799998832 1      11   144567899999887765543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>PHA00733 hypothetical protein

Probab=87.34  E-value=0.95  Score=35.33  Aligned_cols=50  Identities=26%  Similarity=0.603  Sum_probs=36.7

Q ss_pred             CcccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCcccc--chhhHHhhhhhccc
Q 030808           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVK--VARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~--~s~d~l~HL~~qH~   98 (171)
                      ..|.|+.|++. -....|..|... |   .....|++|...  ...++..|+..-|+
T Consensus        72 kPy~C~~Cgk~Fss~s~L~~H~r~-h---~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         72 SPYVCPLCLMPFSSSVSLKQHIRY-T---EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCccCCCCCCcCCCHHHHHHHHhc-C---CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            46999999995 456678888874 2   234699999765  36688888877775

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=86.84  E-value=0.37  Score=40.81  Aligned_cols=45  Identities=24%  Similarity=0.697  Sum_probs=28.1

Q ss_pred             CCcccCCCCCCCCC--HHHHHHh-----hhhhhcC--------------CCCccccCCccccchhh
Q 030808           44 RPDFPCPYCYEDFD--IASLCSH-----LEDEHSC--------------ESKVTVCPICSVKVARD   88 (171)
Q Consensus        44 r~~F~CPfC~e~fD--~~~L~~H-----~~eeH~~--------------e~k~vVCPVCaa~~s~d   88 (171)
                      ...|.||.|.+.+.  +...|.|     |-.+...              ..+...||+|...++.+
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            45799999988332  3445666     3433211              23456899999988653

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=85.11  E-value=0.17  Score=33.84  Aligned_cols=31  Identities=26%  Similarity=0.590  Sum_probs=19.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCC---CccccCCccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES---KVTVCPICSV   83 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~---k~vVCPVCaa   83 (171)
                      .-+|||||. .+.+..       ....+.   -.|.|..|.+
T Consensus         3 LkPCPFCG~~~~~~~~-------~~~~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    3 LKPCPFCGSADVLIRQ-------DEGFDYGMYYYVECTDCGA   37 (61)
T ss_pred             CcCCCCCCCcceEeec-------ccCCCCCCEEEEEcCCCCC
Confidence            468999987 554433       222222   4577999977

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=84.86  E-value=0.2  Score=30.72  Aligned_cols=33  Identities=21%  Similarity=0.632  Sum_probs=22.3

Q ss_pred             CcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        45 ~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .+|.||-||..|++..-.        .+...++||.|.+.+
T Consensus         4 Y~y~C~~Cg~~fe~~~~~--------~~~~~~~CP~Cg~~~   36 (41)
T smart00834        4 YEYRCEDCGHTFEVLQKI--------SDDPLATCPECGGDV   36 (41)
T ss_pred             EEEEcCCCCCEEEEEEec--------CCCCCCCCCCCCCcc
Confidence            468999999976643211        225678899998743

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=84.61  E-value=0.29  Score=33.68  Aligned_cols=30  Identities=20%  Similarity=0.686  Sum_probs=21.6

Q ss_pred             cccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCcccc
Q 030808           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (171)
Q Consensus        46 ~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~   84 (171)
                      .|.||-|++.+++....       .  .-.|.||.|.+.
T Consensus         2 ~~~CP~CG~~iev~~~~-------~--GeiV~Cp~CGae   31 (54)
T TIGR01206         2 QFECPDCGAEIELENPE-------L--GELVICDECGAE   31 (54)
T ss_pred             ccCCCCCCCEEecCCCc-------c--CCEEeCCCCCCE
Confidence            58999999977654332       1  336899999876

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>PRK09710 lar restriction alleviation and modification protein; Reviewed

Probab=84.33  E-value=0.31  Score=34.86  Aligned_cols=30  Identities=20%  Similarity=0.473  Sum_probs=21.0

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCcccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~   84 (171)
                      .=+||||+. .+++.         |....-.++|.-|.+.
T Consensus         6 lKPCPFCG~~~~~v~---------~~~g~~~v~C~~CgA~   36 (64)
T PRK09710          6 VKPCPFCGCPSVTVK---------AISGYYRAKCNGCESR   36 (64)
T ss_pred             ccCCCCCCCceeEEE---------ecCceEEEEcCCCCcC
Confidence            458999999 66554         2333335999999886

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=83.97  E-value=0.7  Score=28.34  Aligned_cols=32  Identities=19%  Similarity=0.520  Sum_probs=19.3

Q ss_pred             ccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCcccc
Q 030808           47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (171)
Q Consensus        47 F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~   84 (171)
                      +.||.|+..|.+..-      ....+...+.||.|-..
T Consensus         3 ~~CP~C~~~~~v~~~------~~~~~~~~v~C~~C~~~   34 (38)
T TIGR02098         3 IQCPNCKTSFRVVDS------QLGANGGKVRCGKCGHV   34 (38)
T ss_pred             EECCCCCCEEEeCHH------HcCCCCCEEECCCCCCE
Confidence            679999884443321      12233347889999654

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PHA02768 hypothetical protein; Provisional

Probab=83.49  E-value=1.1  Score=31.01  Aligned_cols=34  Identities=26%  Similarity=0.529  Sum_probs=25.1

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV   83 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa   83 (171)
                      .|.||.||+ =...+.|..|... |.   ++-.|..|..
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~-H~---k~~kc~~C~k   39 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK-HN---TNLKLSNCKR   39 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh-cC---CcccCCcccc
Confidence            488999999 5567789999988 44   3556666654

>PLN03086 PRLI-interacting factor K; Provisional

Probab=83.04  E-value=1.2  Score=43.00  Aligned_cols=38  Identities=18%  Similarity=0.474  Sum_probs=24.1

Q ss_pred             CcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        45 ~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      ..+.|| |+..+....|..|.. .|+. .+...|+.|...+
T Consensus       477 kpv~Cp-Cg~~~~R~~L~~H~~-thCp-~Kpi~C~fC~~~v  514 (567)
T PLN03086        477 EPLQCP-CGVVLEKEQMVQHQA-STCP-LRLITCRFCGDMV  514 (567)
T ss_pred             CCccCC-CCCCcchhHHHhhhh-ccCC-CCceeCCCCCCcc
Confidence            346777 777667777777764 3443 3566777776554

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=81.99  E-value=0.85  Score=31.54  Aligned_cols=26  Identities=35%  Similarity=0.884  Sum_probs=21.2

Q ss_pred             CcccCCCCCCCC-CHHHHHHhhhhhhc
Q 030808           45 PDFPCPYCYEDF-DIASLCSHLEDEHS   70 (171)
Q Consensus        45 ~~F~CPfC~e~f-D~~~L~~H~~eeH~   70 (171)
                      ..|.|++|++.| +..+|..|+...+.
T Consensus        49 ~~~~C~~C~~~f~s~~~l~~Hm~~~~H   75 (100)
T PF12756_consen   49 ESFRCPYCNKTFRSREALQEHMRSKHH   75 (100)
T ss_dssp             SSEEBSSSS-EESSHHHHHHHHHHTTT
T ss_pred             CCCCCCccCCCCcCHHHHHHHHcCccC
Confidence            369999999955 89999999998754

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=81.10  E-value=1.5  Score=25.78  Aligned_cols=20  Identities=30%  Similarity=0.796  Sum_probs=12.2

Q ss_pred             ccCCCCCCCCCHHHHHHhhh
Q 030808           47 FPCPYCYEDFDIASLCSHLE   66 (171)
Q Consensus        47 F~CPfC~e~fD~~~L~~H~~   66 (171)
                      ..||.|++.+....+-.|++
T Consensus         2 v~CPiC~~~v~~~~in~HLD   21 (26)
T smart00734        2 VQCPVCFREVPENLINSHLD   21 (26)
T ss_pred             CcCCCCcCcccHHHHHHHHH
Confidence            35666666666666666655

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	97.52
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	97.49
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	97.06
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.91
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	96.69
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.67
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	96.67
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.55
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.42
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.33
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	96.3
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	96.27
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.25
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	96.1
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	96.05
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	96.03
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	96.02
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	96.0
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	95.99
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.99
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	95.97
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	95.91
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	95.82
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.8
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.77
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.6
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.56
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	95.55
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	95.49
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	95.33
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	95.25
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	95.08
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.07
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.05
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.0
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.0
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	94.86
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.85
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.81
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.79
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.67
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.62
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	94.61
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	94.58
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.55
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.48
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	94.42
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	94.39
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.37
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	94.34
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	94.33
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.32
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.29
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.29
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	94.26
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	94.26
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.2
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	94.18
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.14
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	94.08
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	94.08
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	94.06
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	94.05
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	93.98
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	93.94
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	93.92
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.91
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.87
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	93.86
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.86
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	93.86
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	93.86
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.81
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	93.81
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	93.8
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	93.78
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	93.73
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	93.71
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	93.6
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.55
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	93.52
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	93.44
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	93.43
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	93.42
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	93.31
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.28
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	93.26
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	93.21
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.18
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	93.15
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	93.04
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.98
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	92.96
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	92.94
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.91
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	92.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	92.89
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	92.76
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	92.76
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.7
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	92.68
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	92.62
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	92.42
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	92.23
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	91.96
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	91.95
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	91.84
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	91.52
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	91.49
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	91.01
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	90.94
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	90.91
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	90.7
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.34
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	90.3
2epa_A	72	Krueppel-like factor 10; transforming growth facto	90.28
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	90.2
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	90.06
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	89.92
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	89.86
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	89.82
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	89.6
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	89.14
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	88.92
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	88.84
1paa_A	30	Yeast transcription factor ADR1; transcription reg	88.46
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	88.43
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.36
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.36
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.28
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	88.22
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	88.01
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.99
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.95
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.93
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.88
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	87.85
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.84
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.76
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.66
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	87.5
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	87.14
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	87.07
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	86.97
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	86.49
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	86.46
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.38
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	85.98
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	85.59
1ard_A	29	Yeast transcription factor ADR1; transcription reg	85.49
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	85.39
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	85.33
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	85.08
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	84.94
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.91
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	84.71
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	84.65
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	84.51
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.41
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	84.31
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	84.3
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	84.22
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	84.17
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	84.1
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	83.94
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	83.89
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.67
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	83.07
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	82.79
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.37
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	81.68
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	81.59
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.5
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	81.02
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.88
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	80.84
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	80.74
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	80.55
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	80.54
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	80.49
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	80.48

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=97.52  E-value=0.0001  Score=46.64  Aligned_cols=54  Identities=26%  Similarity=0.647  Sum_probs=45.0

Q ss_pred             CcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|+.|++.| ....|..|....|..+.+.-.|++|...-  ..++..|+...|+
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHHHHHHHHHHHTC
T ss_pred             cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHHHHHHHHHHHcC
Confidence            369999999944 68889999999897667788999997763  5689999988886

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.49  E-value=0.00012  Score=47.88  Aligned_cols=55  Identities=20%  Similarity=0.384  Sum_probs=46.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccch
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHL  100 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~~  100 (171)
                      .|.|++|++ =.....|..|+...|..+.+.-.|++|...-  ..+|..|+...|+..
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   72 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYS   72 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTSCCS
T ss_pred             CeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhCCCC
Confidence            599999999 5567899999998998777888999998763  568999998888643

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=97.06  E-value=0.0009  Score=40.83  Aligned_cols=51  Identities=24%  Similarity=0.386  Sum_probs=39.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|++|++ --+...|..|+.. |.. .++..|++|...-  ..+|..|+...|+
T Consensus         4 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            4 SRECSYCGKFFRSNYYLNIHLRT-HTG-EKPYKCEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             -CBCTTTCCBCSCHHHHHHHHHH-HHC-CCCEECSSSSCEESSHHHHHHHHHHHC-
T ss_pred             CccCCCCcchhCChHHHHHHHHH-cCC-CCCcCCCCCcchhCCHHHHHHHHHHhcC
Confidence            699999999 5577889999885 543 4567999998753  6689999988774

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.91  E-value=0.0013  Score=43.81  Aligned_cols=52  Identities=19%  Similarity=0.393  Sum_probs=26.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.|+.|++ --....|..|+...|....+.-.|++|...-  ..+|..|+...|
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   89 (95)
T 2yt9_A           35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH   89 (95)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTS
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHHHHHHhc
Confidence            366666666 3345556666654333323455666665432  345555654444

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.69  E-value=0.0019  Score=42.08  Aligned_cols=54  Identities=20%  Similarity=0.320  Sum_probs=43.0

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCC--CCccccCCccccc--hhhHHhhhhhcccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE--SKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e--~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      .|.|++|++ =-....|..|+...|..+  .+...|++|...-  ..+|..|+...|+.
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~   73 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP   73 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC
Confidence            599999999 556788999998888754  3678999998763  56899999876654

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.67  E-value=0.0017  Score=41.50  Aligned_cols=52  Identities=23%  Similarity=0.337  Sum_probs=40.8

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|++|++ =-....|..|+.. |.. .+.-.|++|...-  ..+|..|+...|+
T Consensus         8 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~~~f~~~~~L~~H~~~h~~   62 (70)
T 1x5w_A            8 HPEKCSECSYSCSSKAALRIHERI-HCT-DRPFKCNYCSFDTKQPSNLSKHMKKFHG   62 (70)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHGG-GCC-SCSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH-cCC-CCCEeCCCCCCccCCHHHHHHHHHHHhC
Confidence            4699999999 4567889999976 654 3567999998764  5689999887775

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.67  E-value=0.0013  Score=42.05  Aligned_cols=48  Identities=29%  Similarity=0.676  Sum_probs=39.3

Q ss_pred             CcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccC-Ccccc--chhhHHhhhhh
Q 030808           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCP-ICSVK--VARDMLSHITL   95 (171)
Q Consensus        45 ~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCP-VCaa~--~s~d~l~HL~~   95 (171)
                      ..|.|++|++.|....|..|...   ...++..|+ +|...  ...+|..|+..
T Consensus         9 ~~~~C~~C~k~f~~~~L~~H~~~---~~~~p~~C~~~C~k~f~~~~~L~~H~~~   59 (66)
T 2eod_A            9 RTQPCTYCTKEFVFDTIQSHQYQ---CPRLPVACPNQCGVGTVAREDLPGHLKD   59 (66)
T ss_dssp             CEEECSSSCCEEEHHHHHHHHHH---CSSSEEECTTCCSCCEEETTTHHHHHHT
T ss_pred             CCeeccccCCccCHHHHHHHHHH---cCCcCccCCcccCcccccHHHHHHHHHh
Confidence            46999999997778999999876   566789999 99775  35588888864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.55  E-value=0.0042  Score=37.74  Aligned_cols=50  Identities=16%  Similarity=0.349  Sum_probs=38.2

Q ss_pred             ccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           47 FPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        47 F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      |.|+.|+.. -....|..|... |.. .+.-.|++|...-  ..+|..|+...|+
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT-HTD-VRPYHCTYCNFSFKTKGNLTKHMKSKAH   54 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH-TSS-CCCEECSSSSCEESSHHHHHHHHHSSSS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh-cCC-CCCccCCCCCchhcCHHHHHHHHHHhcc
Confidence            889999994 467889999876 543 4567899997763  5688899876553

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.42  E-value=0.005  Score=37.91  Aligned_cols=51  Identities=24%  Similarity=0.473  Sum_probs=39.1

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|+.|+..| ....|..|... |.. .+.-.|++|...-  ..+|..|+...|.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~H~   55 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS-HTN-EKPYPCGLCNRAFTRRDLLIRHAQKIHS   55 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT-TTS-SCSEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             cCcCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHHcC
Confidence            48999999954 67889999876 543 3567899998764  5688889866664

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.33  E-value=0.0011  Score=45.74  Aligned_cols=54  Identities=19%  Similarity=0.328  Sum_probs=41.8

Q ss_pred             CcccCCCCCCCC--CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccc
Q 030808           45 PDFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        45 ~~F~CPfC~e~f--D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      ..|.|++|++.|  ....|..|+...|. ..+.-.|++|...-  ..+|..|+...|+.
T Consensus        23 ~~~~C~~C~k~f~~~~~~L~~H~~~h~~-~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~   80 (98)
T 2gqj_A           23 GEAVCPTCNVVTRKTLVGLKKHMEVCQK-LQDALKCQHCRKQFKSKAGLNYHTMAEHSA   80 (98)
T ss_dssp             SCCCCTTTCCCCSSCSHHHHHHHHHHHH-HHHHHSCSSSCCCCSCHHHHHHHHHHHSCS
T ss_pred             CCcCCCCCCCChhhhHHHHHHHHHHHcC-CCCCEECCCCCCccCCHHHHHHHHHHHcCC
Confidence            369999999976  58899999976443 24567999997763  56899999877753

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.30  E-value=0.0047  Score=43.21  Aligned_cols=50  Identities=24%  Similarity=0.505  Sum_probs=39.7

Q ss_pred             cccCCCCCCCC--CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYEDF--DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e~f--D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|+.|++.|  ....|..|+.. |  ..+.-.|++|...-  ..+|..|+...|.
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~~-h--~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHMEN-C--KQEMFTCHHCGKQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHHH-H--CCCCCCCSSSCCCCSSHHHHHHHHHHHTC
T ss_pred             CcCCCCCCCCcccCHHHHHHHHHH-H--CCCCeECCCCCCeeCCHHHHHHHhHHhcC
Confidence            59999999988  78999999875 6  45778999997764  5688899544553

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=96.27  E-value=0.0067  Score=43.90  Aligned_cols=57  Identities=21%  Similarity=0.406  Sum_probs=43.6

Q ss_pred             CCCCcccCCCCCCCC-CHHHHHHhhhhhhcCCCCc-------cccCCccccc--hhhHHhhhhhccc
Q 030808           42 DVRPDFPCPYCYEDF-DIASLCSHLEDEHSCESKV-------TVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        42 d~r~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~-------vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      +....|.|+.|++.| +...|..|+...|..+...       ..|++|...-  ..+|..|+...++
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   87 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTG   87 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCC
Confidence            445689999999944 6888999999989876432       5799997753  5678899876543

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.25  E-value=0.0043  Score=39.92  Aligned_cols=51  Identities=18%  Similarity=0.312  Sum_probs=38.9

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      ..|.|++|++ =-....|..|+.. |.. .+.-.|++|...-  ..+|..|+...+
T Consensus        13 k~~~C~~C~k~f~~~~~L~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~   66 (72)
T 1x6e_A           13 KPYGCVECGKAFSRSSILVQHQRV-HTG-EKPYKCLECGKAFSQNSGLINHQRIHT   66 (72)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHG-GGC-SCCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCCCccCCHHHHHHHHHh-cCC-CCCeECCCCCcccCCHHHHHHHHHhcC
Confidence            3699999999 4567889999875 543 4567999998763  568888987654

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.12  E-value=0.0049  Score=39.99  Aligned_cols=56  Identities=20%  Similarity=0.284  Sum_probs=42.3

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcC-CCCccccCCccccc--hhhHHhhhhhcccch
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSC-ESKVTVCPICSVKV--ARDMLSHITLQHGHL  100 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~-e~k~vVCPVCaa~~--s~d~l~HL~~qH~~~  100 (171)
                      ..|.|++|++ --....|..|+...+.. ..+.-.|++|...-  ..+|..|+...|...
T Consensus         6 k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~   65 (78)
T 2d9h_A            6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL   65 (78)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT
T ss_pred             cCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC
Confidence            3699999999 44678899998764432 35678999998764  568999998877543

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.10  E-value=0.0049  Score=42.28  Aligned_cols=54  Identities=20%  Similarity=0.293  Sum_probs=37.8

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccchh
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHLF  101 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~~~  101 (171)
                      .|.|++|++ --....|..|+.. |.. .+.-.|++|...-  ..+|..|+...|...-
T Consensus        37 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~   93 (110)
T 2csh_A           37 PYGCGVCGKKFKMKHHLVGHMKI-HTG-IKPYECNICAKRFMWRDSFHRHVTSCTKSYE   93 (110)
T ss_dssp             SEECTTTSCEESSSHHHHHHHTT-TCC-CCCEECSSSCCEESCHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-cCC-CCCeeCCCCcchhcCHHHHHHHHHHcccccc
Confidence            588999988 4456778888764 433 3457899997653  5688888887775543

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=96.05  E-value=0.0064  Score=39.03  Aligned_cols=50  Identities=18%  Similarity=0.468  Sum_probs=29.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.|++|++ --+...|..|....+.  .+.-.|++|...-  ..++..|+...+
T Consensus        29 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~H~   81 (82)
T 2kmk_A           29 PYPCQYCGKRFHQKSDMKKHTFIHTG--EKPHKCQVCGKAFSQSSNLITHSRKHT   81 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHHHHT--CCCEECTTTSCEESSHHHHHHHHHHHC
T ss_pred             CeeCCcCChhhCCHHHHHHHHHHhcC--CCCCcCCCcchhhCChHHHHHHHHhhC
Confidence            477777777 3356667777654332  2445677776542  446666665443

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.03  E-value=0.0084  Score=41.27  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=8.9

Q ss_pred             ccCCCCCCCC-CHHHHHHhhh
Q 030808           47 FPCPYCYEDF-DIASLCSHLE   66 (171)
Q Consensus        47 F~CPfC~e~f-D~~~L~~H~~   66 (171)
                      |.||+|++.| +...|..|+.
T Consensus         8 ~~C~~C~~~f~~~~~l~~H~~   28 (124)
T 2dlq_A            8 VECPTCHKKFLSKYYLKVHNR   28 (124)
T ss_dssp             CCCTTTCCCCSSHHHHHHHHH
T ss_pred             CCCCCCCCcCCCHHHHHHHHH
Confidence            4455554422 3444444443

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.02  E-value=0.015  Score=38.62  Aligned_cols=54  Identities=20%  Similarity=0.370  Sum_probs=40.6

Q ss_pred             CCcccCCCCCCCC-CHHHHHHhhhhhhcCCCCc-------cccCCccccc--hhhHHhhhhhcc
Q 030808           44 RPDFPCPYCYEDF-DIASLCSHLEDEHSCESKV-------TVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        44 r~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~-------vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      ...|+|+.|++.| ....|..|+...|..+...       -.|++|...-  ..+|..|+...+
T Consensus        23 ~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~   86 (95)
T 2ej4_A           23 QLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHT   86 (95)
T ss_dssp             CSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHH
T ss_pred             cCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcC
Confidence            3468899999955 6788999998878765321       6899997764  568889987643

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=96.00  E-value=0.0097  Score=38.95  Aligned_cols=50  Identities=24%  Similarity=0.482  Sum_probs=29.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.|++|++ --....|..|+.. |.. .+.-.|++|...-  ..+|..|+...+
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H~   86 (90)
T 1a1h_A           34 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHTKIHL   86 (90)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHGGGG
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-cCC-CCCccCCCCCchhCCHHHHHHHHHHhc
Confidence            477777777 4456667777663 332 2445677776543  446777766544

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.99  E-value=0.011  Score=38.37  Aligned_cols=52  Identities=21%  Similarity=0.489  Sum_probs=39.6

Q ss_pred             CcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|+.|++.| ....|..|+.. |.. .+.-.|++|...-  ..+|..|+...++
T Consensus        17 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   71 (77)
T 2cot_A           17 RRYKCDECGKSFSHSSDLSKHRRT-HTG-EKPYKCDECGKAFIQRSHLIGHHRVHTG   71 (77)
T ss_dssp             CSSBCSSSCCBCSCHHHHHHHHTT-TCC-SCSEECSSSCCEESSHHHHHHHGGGSCC
T ss_pred             CCEECCCCCcccCCHHHHHHHHHH-cCC-CcCeeCCCCCCccCCHHHHHHHHHHhCC
Confidence            469999999955 57889999875 543 3567999998763  5688999876543

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.99  E-value=0.0081  Score=39.93  Aligned_cols=47  Identities=19%  Similarity=0.400  Sum_probs=20.2

Q ss_pred             ccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhh
Q 030808           47 FPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (171)
Q Consensus        47 F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~   95 (171)
                      |.|++|++.| +...|..|+...+ . .+.-.|++|...-  ..++..|+..
T Consensus         9 ~~C~~C~~~f~~~~~l~~H~~~h~-~-~~~~~C~~C~~~f~~~~~l~~H~~~   58 (96)
T 2dmd_A            9 HKCEVCGKCFSRKDKLKTHMRCHT-G-VKPYKCKTCDYAAADSSSLNKHLRI   58 (96)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGGGCC-C-CCSEECSSSCCEESSHHHHHHHHHH
T ss_pred             eECCCCCCccCCHHHHHHHHHhcC-C-CCCEeCCCCCCccCCHHHHHHHHHH
Confidence            5555555532 3444555544221 1 2234455554432  3344455443

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.97  E-value=0.014  Score=37.47  Aligned_cols=53  Identities=25%  Similarity=0.531  Sum_probs=39.7

Q ss_pred             CCcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           44 RPDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        44 r~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ...|.|+.|++.| ....|..|... |.. .+.-.|++|...-  ..+|..|+...++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~H~~   70 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKTV-HTG-EKPYRCNICGAQFNRPANLKTHTRIHSG   70 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHHH-HCC-CCSEECTTTCCEESCHHHHHHHHHHHCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHHH-cCC-CCCEECCCCCchhCCHHHHHHHHHhcCC
Confidence            3579999999955 67889999865 543 3567899998763  5688899876443

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.91  E-value=0.0027  Score=42.84  Aligned_cols=48  Identities=21%  Similarity=0.409  Sum_probs=39.8

Q ss_pred             CcccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCccccc-hhhHHhhhhh
Q 030808           45 PDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHITL   95 (171)
Q Consensus        45 ~~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~-s~d~l~HL~~   95 (171)
                      ..+.|+||++.|....|-.|.  .|.. .+++.||.|...+ ..+|..|+..
T Consensus        16 r~~~C~~C~~~~~~~~L~~H~--~~c~-~~~~~C~~C~~~~~~~~l~~H~~~   64 (75)
T 2d9k_A           16 RLAVCQHCDLELSILKLKEHE--DYCG-ARTELCGNCGRNVLVKDLKTHPEV   64 (75)
T ss_dssp             CCEECSSSCCEECHHHHHHHH--HHHH-HCEEECSSSCCEEETTGGGTHHHH
T ss_pred             cccCCcccChHhhHHHHHHHH--hHcC-CCceEcccCCCcCcHHHHHHHHHH
Confidence            469999999999999999997  5654 5678999998764 5688888865

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=95.82  E-value=0.01  Score=41.90  Aligned_cols=50  Identities=28%  Similarity=0.603  Sum_probs=39.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      .|.|++|++ =-....|..|... |   .++-.|++|...-  ..+|..|+...|+-
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~-H---~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRY-T---EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-T---CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-C---CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            599999999 4467789999875 6   4567899997763  66899999888764

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.80  E-value=0.0097  Score=40.96  Aligned_cols=53  Identities=23%  Similarity=0.483  Sum_probs=39.1

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhc-CCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHS-CESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~-~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|++|++ -.+...|..|....|. ...+...|++|...-  ..+|..|+...++
T Consensus        35 ~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (124)
T 2dlq_A           35 PFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTG   91 (124)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSS
T ss_pred             CeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCC
Confidence            588999999 5578888999887643 345567899997753  5578888876554

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.77  E-value=0.01  Score=38.03  Aligned_cols=50  Identities=28%  Similarity=0.495  Sum_probs=38.2

Q ss_pred             ccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        47 F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      |.|+.|++ =-+...|..|+.. |.. .+...|++|...-  ..++..|+...++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   54 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLLI-HSD-TRPYPCQYCGKRFHQKSDMKKHTFIHTG   54 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHHH-HHT-CCCEECSSSCCEESSHHHHHHHHHHHHT
T ss_pred             ccCCCCcccccCchhHHHHHHH-cCC-CCCeeCCcCChhhCCHHHHHHHHHHhcC
Confidence            88999999 5578889999986 432 4567999998764  5688888875543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.60  E-value=0.012  Score=39.10  Aligned_cols=56  Identities=25%  Similarity=0.440  Sum_probs=42.6

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccchhhh
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGHLFKL  103 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~~~k~  103 (171)
                      .|.|+.|+.. -....|..|... |.. .+.-.|++|...-  ..+|..|+...|+..|..
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c   61 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIRT-HTG-EKPFACDICGRKFARSDERKRHRDIQHILPILE   61 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHH-HHC-CCCEECTTTCCEESSHHHHHHHHHHHTHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHHH-cCC-CCCccCCCCCCccCCHHHHHHHHHHhCCCcchH
Confidence            5899999994 467889999875 544 3557899997753  568999999988755543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.56  E-value=0.019  Score=38.86  Aligned_cols=53  Identities=21%  Similarity=0.474  Sum_probs=37.6

Q ss_pred             CCcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           44 RPDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        44 r~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ...|.|++|++.| +...|..|+.. |.. .+...|++|...-  ..++..|+...++
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   70 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHERT-HTD-ERPYTCDICHKAFRRQDHLRDHRYIHSK   70 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHHH-HCC-SCCCBCSSSCCBCSCHHHHHHHGGGSCC
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH-cCC-CCCcCCCCccchhCCHHHHHHHHHHhCC
Confidence            3468999999954 67788888875 332 3557899997653  5578888876554

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.55  E-value=0.016  Score=38.40  Aligned_cols=52  Identities=27%  Similarity=0.475  Sum_probs=40.2

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|++|++ --+...|..|+.. |.. .+...|++|...-  ..+|..|+...|+
T Consensus        35 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   89 (96)
T 2dmd_A           35 KPYKCKTCDYAAADSSSLNKHLRI-HSD-ERPFKCQICPYASRNSSQLTVHLRSHTG   89 (96)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH-SCC-CCCEECSSSSCEESSHHHHHHHHTTCCS
T ss_pred             CCEeCCCCCCccCCHHHHHHHHHH-hCC-CCCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            3699999999 5577889999975 433 4567999998763  5689999877664

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=95.49  E-value=0.032  Score=37.74  Aligned_cols=52  Identities=25%  Similarity=0.349  Sum_probs=39.2

Q ss_pred             CcccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|++|++. -....|..|... |.. .+.-.|++|...-  ..+|..|+...++
T Consensus        44 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~L~~H~~~H~~   98 (106)
T 2ee8_A           44 RPYTCDICHKAFRRQDHLRDHRYI-HSK-EKPFKCQECGKGFCQSRTLAVHKTLHMQ   98 (106)
T ss_dssp             CCCBCSSSCCBCSCHHHHHHHGGG-SCC-CCTTSCSSSCCCCSSHHHHHHHHHHTTS
T ss_pred             CCcCCCCccchhCCHHHHHHHHHH-hCC-CCCeECCCcCCcccCHHHHHHHHHHhCC
Confidence            35999999994 478899999765 433 3567899998763  5689999876554

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=95.33  E-value=0.019  Score=40.13  Aligned_cols=52  Identities=25%  Similarity=0.430  Sum_probs=40.9

Q ss_pred             CcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.||+|++.| ....|..|+.. |.. .++-.|++|...-  ..+|..|+...|.
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~~-H~~-~k~~~C~~C~k~F~~~~~L~~H~~~~H~   81 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLRL-LHA-AQVFPCKYCPATFYSSPGLTRHINKCHP   81 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHHT-TSC-SSSEECTTSSCEESSHHHHHHHHHTTCT
T ss_pred             CCEECCCCCCCcCcHHHHhhhhhh-ccC-CCccCCCCCCCEeCCHHHHHHhCcccCc
Confidence            469999999955 57889999876 433 4678999998763  6789999987774

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.25  E-value=0.017  Score=33.75  Aligned_cols=35  Identities=23%  Similarity=0.245  Sum_probs=27.6

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|....|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~-k~~~C~~C   47 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWRYYHTGE-KPSGPSSG   47 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHTTTTTTS-CSSSCCCC
T ss_pred             CEECCccCchhCChHHHHHHhHhhcCCC-CCCCCCCC
Confidence            5999999994 45688899987567654 56789988

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.08  E-value=0.022  Score=39.01  Aligned_cols=45  Identities=22%  Similarity=0.479  Sum_probs=31.4

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhh
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHIT   94 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~   94 (171)
                      .|.|++|++.| +...|..|... |   .+.-.|++|...-  ..+|..|++
T Consensus        16 ~~~C~~C~~~f~~~~~l~~H~~~-H---~~~~~C~~C~~~f~~~~~l~~H~~   63 (107)
T 1wjp_A           16 VYQCRLCNAKLSSLLEQGSHERL-C---RNAAVCPYCSLRFFSPELKQEHES   63 (107)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-H---HHSBCCTTTCCCBSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-C---CCCccCCCCCCccCCHHHHHHHHH
Confidence            58888888844 56778888766 4   2456788886653  457777874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.07  E-value=0.018  Score=38.09  Aligned_cols=52  Identities=29%  Similarity=0.577  Sum_probs=40.4

Q ss_pred             CcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|++|++.| +...|..|+.. |.. .+.-.|++|...-  ..+|..|+...|+
T Consensus         6 ~~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   60 (95)
T 2yt9_A            6 SGVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSCPVCGLRFKRKDRMSYHVRSHDG   60 (95)
T ss_dssp             SCEECSSSCCEESSSHHHHHHHHH-SCS-SCSEECSSSCCEESCHHHHHHHHHHHCC
T ss_pred             CCeECCCCCCccCChHHHHHHHHh-cCC-CCCCcCCCCCCccCCHHHHHHHHHHhcC
Confidence            469999999954 67889999875 543 3567999998763  5689999987775

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.05  E-value=0.026  Score=32.95  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=26.3

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~C   46 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRG-IHTGE-KPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGG-GTSCC-CCCSCCCC
T ss_pred             CeECCCCCCeeCCHHHHHHHhh-hcCCC-CCCCCCCC
Confidence            5999999994 45678889965 46544 67789998

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.00  E-value=0.0034  Score=41.82  Aligned_cols=51  Identities=10%  Similarity=0.039  Sum_probs=41.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      .|.|++|+. =-....|..|....|.   ...+|+.|...-  ..+|..||...|+.
T Consensus        31 ~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~H~~~~h~~   84 (88)
T 1llm_C           31 PFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLENEVARLKKL   84 (88)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            599999999 4477899999998884   678999997754  55799999887754

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=95.00  E-value=0.028  Score=32.83  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=26.5

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQNV-HVG-EKPSGPSSG   46 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGGG-GSS-SSCSCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCcCCCCC
Confidence            5999999994 456788999765 654 356789998

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.86  E-value=0.021  Score=33.38  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=27.0

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      ..|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2eq0_A           11 KPYKCHECGKVFRRNSHLARHQLI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHTT-TCCC-CCSCCSCC
T ss_pred             CCeECCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            3599999999 4567788899754 6554 66789998

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=94.85  E-value=0.023  Score=33.18  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~c   46 (46)
T 2ema_A           12 RYKCNECGKVFSRNSQLSQHQKI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHTG-GGCC-CCCSSSCC
T ss_pred             CcCCCCCcchhCCHHHHHHHHHh-cCCC-CCCCCCCC
Confidence            599999999 4567788999765 6544 56789998

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.81  E-value=0.032  Score=32.42  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=26.5

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++.| ....|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~~C   46 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK-CHTGE-RHSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH-HHSCC-SSCCSCCC
T ss_pred             CccCCccChhhCCHHHHHHHHH-hcCCC-CCCCCCCC
Confidence            59999999944 5688999975 56554 56789998

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.79  E-value=0.029  Score=32.65  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=26.4

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI-HTG-ENPSGPSSG   46 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT-TTT-SCCSCCCCC
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            5999999994 466789999765 654 356789998

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.67  E-value=0.027  Score=32.91  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2emy_A           12 PYECHECGKAFSRKYQLISHQRT-HAGE-KPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTTS-CCSCSSCC
T ss_pred             CcCCCCCCcccCcHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999999 5567889999765 6543 56789998

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=94.62  E-value=0.039  Score=32.27  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQRV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHHH-HSS-CCCSSCCCC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4566788899864 654 367789988

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=94.61  E-value=0.039  Score=36.13  Aligned_cols=48  Identities=23%  Similarity=0.560  Sum_probs=38.1

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhh
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~   95 (171)
                      -|.|+.|++.| ....|..|.. .|.. .++-.|++|...-  ..+|..|+..
T Consensus         4 py~C~~C~k~F~~~~~L~~H~~-~Ht~-ekp~~C~~C~k~F~~~~~L~~H~~~   54 (60)
T 4gzn_C            4 PFFCNFCGKTYRDASGLSRHRR-AHLG-YRPRSCPECGKCFRDQSEVNRHLKV   54 (60)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH-HHHT-CCCEECTTTCCEESSHHHHHHHGGG
T ss_pred             CccCCCCCCEeCCHHHHHHHHH-HhCC-CcCeECCCCCCCcCCHHHHHHHhCc
Confidence            49999999955 5778999986 4765 4677999997763  6789999875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.58  E-value=0.034  Score=32.63  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQRL-HTGQ-RPSGPSSG   46 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHHH-HHSC-CCCCCCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999999 4456788899865 6544 56789998

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.55  E-value=0.03  Score=32.69  Aligned_cols=34  Identities=18%  Similarity=0.187  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~c   46 (46)
T 2ytk_A           12 PYKCNECGKVFTQNSHLTNHWR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HHSS-SSCSSCCCC
T ss_pred             CEeCCcCCCccCCHHHHHHHHH-HHCC-CCCCCCCCC
Confidence            599999999 446788899986 4654 356789998

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.48  E-value=0.03  Score=32.67  Aligned_cols=34  Identities=24%  Similarity=0.263  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~c   46 (46)
T 2emh_A           12 PYICTVCGKAFTDRSNLIKHQK-IHTGE-KPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH-HHHCS-SCSSSCCC
T ss_pred             CcCCCCCCchhCCHHHHHHHHH-hcCCC-CCCCCCCC
Confidence            599999999 455678999976 56543 56789998

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.42  E-value=0.031  Score=34.23  Aligned_cols=39  Identities=18%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             CcccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCcccc
Q 030808           45 PDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVK   84 (171)
Q Consensus        45 ~~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~   84 (171)
                      ..|.|++|++. -....|..|+...|..+ +.-.|++|...
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~~~H~~~-k~~~C~~C~k~   50 (54)
T 2eps_A           11 KPYICQSCGKGFSRPDHLNGHIKQVHTSE-RPHKCQVWVSG   50 (54)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCC-CCCCSSSSCCS
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCCC-CCccCCCCCCC
Confidence            36999999994 47788999998778654 56789999754

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=94.39  E-value=0.054  Score=37.47  Aligned_cols=51  Identities=25%  Similarity=0.543  Sum_probs=38.2

Q ss_pred             CcccCC--CCCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           45 PDFPCP--YCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~CP--fC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.||  .|++. -+...|..|+. .|  ..+.-.|++|...-  ..++..|+...++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h--~~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (124)
T 1ubd_C            4 RTIACPHKGCTKMFRDNSAMRKHLH-TH--GPRVHVCAECGKAFVESSKLKRHQLVHTG   59 (124)
T ss_dssp             -CEECCSTTCCCEESSHHHHHHHHG-GG--SCCCEECTTTCCEESSHHHHHHHGGGTSC
T ss_pred             CcccCCCCCCcCccCCHHHHHHHHH-Hc--CCCCeECCCCCchhCCHHHHHHHHHHcCC
Confidence            368999  89994 46788999986 46  56678899997753  5688889876543

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.37  E-value=0.03  Score=32.66  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=26.4

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2ene_A           12 PYKCNECGKVFRHNSYLSRHQRI-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TCCC-CCCSCCCC
T ss_pred             CeECCCCCchhCChHHHHHHHhh-cCCC-CCCCCCCC
Confidence            5999999994 456788999765 6543 56789998

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.34  E-value=0.044  Score=31.83  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=26.3

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHERL-HSG-EKPSGPSSG   46 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHHH-CCS-SSCCCCCCC
T ss_pred             CeECCCCCCccCchHHHHHHHHh-cCC-CCCCCCCCC
Confidence            5999999994 556789999754 654 356789988

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.33  E-value=0.053  Score=34.69  Aligned_cols=51  Identities=24%  Similarity=0.505  Sum_probs=39.1

Q ss_pred             cccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~~qH   97 (171)
                      .|.|++  |++ =-....|..|+...|..+ +.-.|++  |...-  ..+|..|+...+
T Consensus         7 ~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~-~~~~C~~~~C~k~f~~~~~L~~H~~~H~   64 (79)
T 2dlk_A            7 GMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMKLHS   64 (79)
T ss_dssp             SEECSSTTTCCEESSHHHHHHHHHHGGGSC-CCEECSCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHHHhCCC-CCeECCCCCCcCccCCHHHHHHHHHHhC
Confidence            588887  999 446889999998778754 5678998  97753  568888887543

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.32  E-value=0.047  Score=31.78  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=26.4

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++.| ....|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~C   46 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSM-VHTAE-KPSGPSSG   46 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH-HTTCC-CSSSCCCC
T ss_pred             CcCCCcCCchhCCHHHHHHHHH-HcCCC-CCCCCCCC
Confidence            59999999955 6778899966 46544 56789998

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.29  E-value=0.035  Score=32.34  Aligned_cols=35  Identities=20%  Similarity=0.226  Sum_probs=27.0

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      ..|.|++|++ =-....|..|.. .|..+ ++-.|++|
T Consensus        11 k~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~c   46 (46)
T 2ep2_A           11 KPYECSICGKSFTKKSQLHVHQQ-IHTGE-KPSGPSSG   46 (46)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHH-TTSSC-CSCCSCCC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHH-HhCCC-CCCCCCCC
Confidence            3599999999 556788999976 46544 56789988

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.29  E-value=0.043  Score=32.07  Aligned_cols=34  Identities=21%  Similarity=0.206  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT-TCC-SCSSCCCCC
T ss_pred             CcCCCccChhhCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4567889999765 654 356789988

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.26  E-value=0.038  Score=32.22  Aligned_cols=34  Identities=18%  Similarity=0.126  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~c   46 (46)
T 2ytj_A           12 PYICAECGKAFTIRSNLIKHQK-IHTK-QKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HTSC-CCCSSCSCC
T ss_pred             CeECCCCChhhCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            599999999 456678999976 4654 466789998

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.26  E-value=0.036  Score=37.89  Aligned_cols=50  Identities=22%  Similarity=0.321  Sum_probs=38.8

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|++|++. -....|..|..  |.. .+.-.|++|...-  ..+|..|+...|.
T Consensus        42 ~~~C~~C~~~f~~~~~l~~H~~--H~~-~~~~~C~~C~~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           42 AAVCPYCSLRFFSPELKQEHES--KCE-YKKLTCLECMRTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHH--HCS-TGGGEEGGGTEECSSHHHHHHHHHHTSC
T ss_pred             CccCCCCCCccCCHHHHHHHHH--cCC-CCCccCccccchhCCHHHHHHHHHHHcC
Confidence            5999999994 46788999983  654 4668999998763  5689999976663

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.20  E-value=0.036  Score=32.44  Aligned_cols=34  Identities=18%  Similarity=0.062  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHTT-TSC-SCCSSCCCC
T ss_pred             CeECCcCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4567889999754 644 456789998

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.18  E-value=0.037  Score=32.34  Aligned_cols=34  Identities=24%  Similarity=0.204  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2eoo_A           12 PYGCNECGKNFGRHSHLIEHLKR-HFRE-KSSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HHST-TSSCCSCC
T ss_pred             CEEccccCcccCCHHHHHHHHHH-HcCC-CCCCCCCC
Confidence            599999999 4566789999765 6543 56789988

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.14  E-value=0.039  Score=32.16  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2enc_A           12 PFKCEECGKGFYTNSQCYSHQR-SHSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HSCC-SSCCSSCCC
T ss_pred             CcCCCCCCCcCCChHHHHHHHH-HhCC-CCCCCCCCC
Confidence            599999999 556788999975 4654 366789998

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.08  E-value=0.031  Score=32.63  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      ..|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        11 ~~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2en6_A           11 KPYGCNECGKTFSQKSILSAHQRT-HTGE-KPSGPSSG   46 (46)
T ss_dssp             CCEEETTTTEEESSHHHHHHHHHH-HSSC-CCSSSCCC
T ss_pred             cCeECCCCCcccCchHHHHHHHHH-cCCC-CCCCCCCC
Confidence            3699999999 4556889999875 6544 66789998

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.08  E-value=0.04  Score=32.02  Aligned_cols=34  Identities=18%  Similarity=0.168  Sum_probs=26.6

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-~~~~C~~C   46 (46)
T 2eoe_A           12 PYKCNECGKVFTQNSHLANHQR-IHTGV-KPSGPSSG   46 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHG-GGSCC-CSCSSCCC
T ss_pred             CeECCCcChhhCCHHHHHHHHH-HcCCC-CCCCCCCC
Confidence            599999999 556778889975 56544 66789998

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=94.06  E-value=0.038  Score=32.32  Aligned_cols=34  Identities=24%  Similarity=0.289  Sum_probs=26.4

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++.| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2ely_A           12 PFKCVECGKGFSRRSALNVHHKL-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCSSSCCCBSSTTHHHHHHHH-HSC-CSSCSCCCC
T ss_pred             CcccCccCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            59999999954 56788899765 654 466789998

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=94.05  E-value=0.044  Score=31.80  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2el4_A           12 PYGCSQCAKTFSLKSQLIVHQRS-HTG-VKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHGGG-SSS-CCCSCCTTC
T ss_pred             ceECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4566788999754 654 456789998

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.98  E-value=0.056  Score=31.47  Aligned_cols=34  Identities=24%  Similarity=0.219  Sum_probs=26.1

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHT-TTTT-CCCCSSCCC
T ss_pred             CeECCCCCceeCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            5999999994 45678889976 4644 356789988

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=93.94  E-value=0.047  Score=40.34  Aligned_cols=49  Identities=27%  Similarity=0.327  Sum_probs=36.9

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhh
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~   95 (171)
                      -.|.|+.|++ =-....|..|+. .|..+ ++-.|++|...-  ..+|..|+..
T Consensus        21 k~y~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~C~k~F~~~~~L~~H~~~   72 (133)
T 2lt7_A           21 VYYICIVCKRSYVCLTSLRRHFN-IHSWE-KKYPCRYCEKVFPLAEYRTKHEIH   72 (133)
T ss_dssp             EEEEETTTCCEESCHHHHHHHHH-HHHCC-SCEECSSSSCEESSHHHHHHHHHH
T ss_pred             cCeECCCCCCCcCCHHHHHHHHH-HcCCC-CCeeCCccCeecccccchhhhccc
Confidence            3699999999 456788999986 57644 567899997653  5678888765

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.92  E-value=0.086  Score=37.72  Aligned_cols=36  Identities=31%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcC-CCCccccCCc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSC-ESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~-e~k~vVCPVC   81 (171)
                      .|.|+.|++.| +...|..|+...|.. +.+.-+|++|
T Consensus         3 ~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c   40 (155)
T 2gli_A            3 DCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWG   40 (155)
T ss_dssp             BCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBT
T ss_pred             cCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCC
Confidence            46666666633 456666666665432 3344555543

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.91  E-value=0.041  Score=32.19  Aligned_cols=34  Identities=21%  Similarity=0.188  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~C   46 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWIT-HTRE-KPSGPSSG   46 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHTH-HHHC-CCCSCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999999 4567889999766 5443 56789988

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=93.87  E-value=0.053  Score=31.45  Aligned_cols=34  Identities=21%  Similarity=0.168  Sum_probs=26.4

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em9_A           12 PYNCKECGKSFRWASCLLKHQRV-HSG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGGG-GTS-CCCCSTTCC
T ss_pred             CeECCccccccCChHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 457889999754 654 356789988

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=93.86  E-value=0.083  Score=35.02  Aligned_cols=55  Identities=24%  Similarity=0.441  Sum_probs=38.6

Q ss_pred             CCCCcccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccC--Cccccc--hhhHHhhhhhccc
Q 030808           42 DVRPDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        42 d~r~~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCP--VCaa~~--s~d~l~HL~~qH~   98 (171)
                      +....|.|++  |+. --....|..|+.. |.. .+...||  +|...-  ..+|..|+...++
T Consensus        11 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   72 (100)
T 2ebt_A           11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HTG-EKPYKCTWEGCDWRFARSDELTRHYRKHTG   72 (100)
T ss_dssp             CSCCCEECCSSSCCCEESCHHHHHHHHHH-HSC-CCCEECCSSSCCCEESSHHHHHHHHHHHTS
T ss_pred             ccCcceEcCCCCCCCcccCHHHHHHHHHH-hCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhCC
Confidence            3456799998  999 4478889999875 433 3557897  587653  5678888876554

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.86  E-value=0.054  Score=31.42  Aligned_cols=34  Identities=24%  Similarity=0.215  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2eme_A           12 PYVCDYCGKAFGLSAELVRHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG-GGCC-CSCCSSCCC
T ss_pred             CeECCCCChhhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            599999999 456788999985 5654 356789988

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=93.86  E-value=0.065  Score=33.95  Aligned_cols=49  Identities=24%  Similarity=0.476  Sum_probs=36.4

Q ss_pred             CcccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhh
Q 030808           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITL   95 (171)
Q Consensus        45 ~~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~   95 (171)
                      ..|.||+  |++ --....|..|... |.. .+.-.|++|...-  ..++..|+..
T Consensus        18 ~~~~C~~~~C~k~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G           18 RPYACPVESCDRRFSRSDELTRHIRI-HTG-QKPFQCRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             CCEECSSTTBCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHTT
T ss_pred             CccCCcCCCCCCccCCHHHHHHHHHh-hCC-CCCeECCCCCchhCCHHHHHHHHHh
Confidence            4699996  999 5567889999764 554 3567899998763  5678888753

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=93.86  E-value=0.068  Score=34.77  Aligned_cols=51  Identities=25%  Similarity=0.517  Sum_probs=37.8

Q ss_pred             cccCCC--CCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPY--CYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPf--C~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.||+  |++. -+...|..|+...+ . .+.-.|++|...-  ..++..|+...++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~~h~-~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   59 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIRIHT-G-QKPFQCRICMRNFSRSDHLTTHIRTHTG   59 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHHHHH-C-CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             ceECCCCCCCCccCCHHHHHHHHHHhC-C-CCCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            599995  9994 46788999987543 3 3567999998763  5688899875543

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.81  E-value=0.067  Score=31.01  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=26.1

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHTT-TTT-CSCCCSCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-cCC-CCCCCCCCC
Confidence            5999999994 456788899754 654 356789988

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=93.81  E-value=0.026  Score=40.45  Aligned_cols=51  Identities=27%  Similarity=0.509  Sum_probs=38.5

Q ss_pred             cccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~~qH~   98 (171)
                      .|.||+  |++ =-+...|..|+.. |.. .+.-.|++  |...-  ..+|..|+...|.
T Consensus        67 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~  124 (155)
T 2gli_A           67 PHKCTFEGCRKSYSRLENLKTHLRS-HTG-EKPYMCEHEGCSKAFSNASDRAKHQNRTHS  124 (155)
T ss_dssp             CCCCCSTTCCCCCSSHHHHHHHHHH-TTT-CCCEECCSTTCCCEESSSSTTHHHHHHTTC
T ss_pred             CccCCCCCCCCcccCHHHHHHHHHH-cCC-CCCeeCCCCCCCCccCCHHHHHHHHHHhcC
Confidence            599997  999 5567889999976 443 45678998  97753  5689999866664

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.80  E-value=0.035  Score=32.26  Aligned_cols=34  Identities=21%  Similarity=0.175  Sum_probs=26.2

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++.| ....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2epw_A           12 PCKCTECGKAFCWKSQLIMHQRT-HVD-DKHSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHHHH-CCS-CCCSCCCCC
T ss_pred             CeeCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59999999944 56788999765 654 356789988

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.78  E-value=0.07  Score=31.11  Aligned_cols=34  Identities=18%  Similarity=0.226  Sum_probs=26.3

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++.| ....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQR-VHMG-EKTSGPSSG   46 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGG-GGGS-CCCCCSCCC
T ss_pred             CeeCcccCchhCCHHHHHHHHH-hcCC-CCCCCCCCC
Confidence            59999999954 5678889976 5654 456789988

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.73  E-value=0.055  Score=31.47  Aligned_cols=34  Identities=15%  Similarity=0.150  Sum_probs=26.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~C   46 (46)
T 2ytd_A           12 PYKCSECGKAFHRHTHLNEHRR-IHTG-YRPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HHTC-CCSSCSSCC
T ss_pred             CeECCCCCCeeCChHHHHHHHH-HcCC-CCCCCCCCC
Confidence            599999999 455678999965 4654 356789998

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=93.71  E-value=0.066  Score=39.97  Aligned_cols=51  Identities=24%  Similarity=0.496  Sum_probs=36.1

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|++|+. =-+...|..|+...+.  .+.-.|++|...-  ..+|..|+...++
T Consensus       105 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~L~~H~~~H~~  158 (190)
T 2i13_A          105 PYACPECGKSFSQLAHLRAHQRTHTG--EKPYKCPECGKSFSREDNLHTHQRTHTG  158 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CCcCCCCCCccCCHHHHHHHHHHhCC--CCCeECCCCCcccCCHHHHHHHHHhcCC
Confidence            588999988 4466778888875443  3456788887653  5578888876554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=93.60  E-value=0.076  Score=33.95  Aligned_cols=50  Identities=22%  Similarity=0.453  Sum_probs=25.0

Q ss_pred             ccC--CCCCCCC-CHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhhhccc
Q 030808           47 FPC--PYCYEDF-DIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        47 F~C--PfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~~qH~   98 (171)
                      |.|  +.|++.| ....|..|... |.. .+.-.||+  |...-  ..++..|+...++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   58 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG   58 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcccCCHHHHHHHHHH-hCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            456  5566633 45556666533 332 23455655  65432  3455566655444

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.55  E-value=0.067  Score=31.10  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2em7_A           12 PYKCEECGKGFICRRDLYTHHMV-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHGGG-GTT-CCCSSTTCC
T ss_pred             CccCCCccchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999764 644 456789998

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.52  E-value=0.063  Score=31.11  Aligned_cols=34  Identities=21%  Similarity=0.158  Sum_probs=26.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emm_A           12 PHKCNECGKSFIQSAHLIQHQRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HSC-CCTTSSSCC
T ss_pred             CeeCCCCChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5567889999764 654 456789988

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.44  E-value=0.069  Score=31.14  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~-~k~~~C~~c   46 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQKI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGGG-TSC-SSCSCCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4566788999864 543 466789998

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.43  E-value=0.064  Score=30.90  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |.. .++-.|++|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   44 (44)
T 2emx_A           10 PFGCSCCEKAFSSKSYLLVHQQT-HAE-EKPSGPSSG   44 (44)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHH-HTS-SCSCSCCCC
T ss_pred             CccCCCCCcccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 5557889999765 654 356789988

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.42  E-value=0.07  Score=38.38  Aligned_cols=52  Identities=23%  Similarity=0.448  Sum_probs=39.4

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcC--CCCccccCCccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSC--ESKVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~--e~k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.|++|++.| ....|..|....|..  ..++-.|++|...-  ..+|..|+..-|
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~H   74 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYH   74 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTS
T ss_pred             CcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhc
Confidence            59999999944 678899999877853  45678999997753  568889943334

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.31  E-value=0.077  Score=30.83  Aligned_cols=34  Identities=24%  Similarity=0.194  Sum_probs=26.0

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQRI-HSG-KKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GSS-CCCSCSSCC
T ss_pred             CeeCCCcCCccCCHHHHHHHHHH-hcC-CCCCCCCCC
Confidence            599999999 4556788899764 654 356789988

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.28  E-value=0.053  Score=31.56  Aligned_cols=34  Identities=26%  Similarity=0.241  Sum_probs=26.2

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C   46 (46)
T 2en1_A           12 PFKCEECGKRFTQNSQLHSHQRV-HTGE-KPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHGGG-GSCC-CCSCCCCC
T ss_pred             CeeCCCCCcccCCHHHHHHHHHH-cCCC-CCCCCCCC
Confidence            599999999 4566788899754 6543 66789988

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.26  E-value=0.048  Score=31.77  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2ysp_A           12 PYKCEKCGKGYNSKFNLDMHQKV-HTG-ERPSGPSSG   46 (46)
T ss_dssp             SEEETTTTEEESCHHHHHHHHTT-SCS-CCSSCCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHh-hCC-CCCCCCCCC
Confidence            599999999 4567889999765 654 356789988

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.21  E-value=0.067  Score=31.07  Aligned_cols=35  Identities=20%  Similarity=0.342  Sum_probs=27.2

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCcc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICS   82 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCa   82 (171)
                      .|.|+.|++. -....|..|... |.. .+.-.||+|-
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-H~~-~~~~~C~~cg   45 (45)
T 2epq_A           10 PYSCPVCGLRFKRKDRMSYHVRS-HDG-SVGKSGPSSG   45 (45)
T ss_dssp             SSEETTTTEECSCHHHHHHHHHH-HSC-CCCCCCCCCC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHH-ccC-CCCCCCcCCC
Confidence            5999999994 477889999865 544 4567899983

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.18  E-value=0.047  Score=31.77  Aligned_cols=34  Identities=18%  Similarity=0.170  Sum_probs=26.2

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|.. .|..+ ++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~~C   46 (46)
T 2yu8_A           12 PYKCNECGKVFTQNSHLARHRR-VHTGG-KPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSSHHHHHHTH-HHHSC-CCSCSCCC
T ss_pred             CeECCcCCchhCCHHHHHHHHH-hcCCC-CCCCCCCC
Confidence            599999999 445678889975 56544 56789998

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=93.15  E-value=0.085  Score=30.63  Aligned_cols=34  Identities=21%  Similarity=0.134  Sum_probs=26.7

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2emp_A           12 PYMCNECGKAFSVYSSLTTHQVI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESCHHHHHHHHHH-HHC-CSCCSCCCC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 5567889999765 654 456789998

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=93.04  E-value=0.1  Score=38.97  Aligned_cols=52  Identities=21%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             cccCC--CCCC-CCCHHHHHHhhhhhhcCCCCcccc--CCccccc--hhhHHhhhhhcc
Q 030808           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVC--PICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CP--fC~e-~fD~~~L~~H~~eeH~~e~k~vVC--PVCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.|+  .|+. =.+...|..|+...|....+.-+|  ++|...-  ..+|..|+...+
T Consensus        72 ~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~  130 (190)
T 1tf6_A           72 NFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHT  130 (190)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGS
T ss_pred             ceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhC
Confidence            46666  6766 445666667766666555555666  6675542  446666665544

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.98  E-value=0.078  Score=30.70  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=26.1

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++. -....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2en8_A           12 SHTCDECGKNFCYISALRIHQR-VHMG-EKCSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHT-TTCC-SCSSCCSCC
T ss_pred             CeECCCcCcccCCHHHHHHHHH-HhCC-CCCCCCCCC
Confidence            5999999994 46788899975 4654 356789988

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=92.96  E-value=0.11  Score=33.22  Aligned_cols=47  Identities=23%  Similarity=0.290  Sum_probs=36.9

Q ss_pred             cccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCC---ccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI---CSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPV---Caa~~--s~d~l~HL~~qH   97 (171)
                      .|.||+  |++ --....|..|+...+.     -.|++   |...-  ..+|..|+...|
T Consensus        31 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           31 PYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSHHHHHHHHHHCC
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCHHHHHHHHHhcC
Confidence            599999  999 5578899999976554     68999   87653  568889987655

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=92.94  E-value=0.09  Score=30.64  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=26.2

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2el6_A           12 PYKCSQCEKSFSGKLRLLVHQRM-HTR-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG-GCC-SSCCSCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-cCC-CCCCCCCCC
Confidence            599999999 4567889999654 654 356789988

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.91  E-value=0.09  Score=30.63  Aligned_cols=34  Identities=26%  Similarity=0.238  Sum_probs=26.0

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|... |.. .++-.|+||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~~   46 (46)
T 2em2_A           12 PFKCKECGKAFRQNIHLASHLRI-HTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCC-CCSSCSSCC
T ss_pred             CEECCcCCchhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            599999999 4566889999764 644 356789886

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.89  E-value=0.079  Score=30.79  Aligned_cols=34  Identities=21%  Similarity=0.156  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ep0_A           12 PYKCDVCHKSFRYGSSLTVHQR-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT-TTSS-SCCCSCCCC
T ss_pred             CeeCcccCcccCChHHHHHHHH-HhCC-CCCCCCCCC
Confidence            599999999 556688999975 4654 356789988

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.89  E-value=0.076  Score=30.87  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=25.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~~~~~C~~~   46 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQK-IHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT-TTTT-SCCCCTTCC
T ss_pred             CeECCCCCchhCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            599999999 556678899976 4654 356789886

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=92.76  E-value=0.15  Score=33.07  Aligned_cols=35  Identities=20%  Similarity=0.489  Sum_probs=14.7

Q ss_pred             ccCCC--CCCC-CCHHHHHHhhhhhhcCCCCccccCCccc
Q 030808           47 FPCPY--CYED-FDIASLCSHLEDEHSCESKVTVCPICSV   83 (171)
Q Consensus        47 F~CPf--C~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa   83 (171)
                      |.||+  |+.. -....|..|.. .|..+ +.-.|++|..
T Consensus        36 ~~C~~~~C~~~f~~~~~l~~H~~-~h~~~-~~~~C~~C~~   73 (89)
T 2wbs_A           36 YHCDWDGCGWKFARSDELTRHYR-KHTGH-RPFQCQKCDR   73 (89)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHH-HHHCC-CCEECSSSSC
T ss_pred             cCCCCCCCCCccCCHHHHHHHHH-HcCCC-CCccCCCCCc
Confidence            55543  5552 23444455543 23222 2344555543

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=92.76  E-value=0.1  Score=38.87  Aligned_cols=50  Identities=22%  Similarity=0.427  Sum_probs=30.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.||+|+. =-+...|..|+...+.  .+...|++|...-  ..++..|+...+
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~~C~~C~~~f~~~~~l~~H~~~h~  101 (190)
T 2i13_A           49 PYKCPECGKSFSDKKDLTRHQRTHTG--EKPYKCPECGKSFSQRANLRAHQRTHT  101 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHHHHC--CCCEECTTTCCEESCHHHHHHHHHHHH
T ss_pred             CccCCCcCchhCCHHHHHHHHHhcCC--CCCccCcccCCccCCHHHHHHHHHhcC
Confidence            577777777 4456677777765443  3456777776542  446667766544

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.70  E-value=0.12  Score=30.05  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=26.2

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++. -....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   46 (46)
T 2yso_A           12 SHQCRECGEIFFQYVSLIEHQVL-HMG-QKNSGPSSG   46 (46)
T ss_dssp             CEECTTTCCEESSHHHHHHHHHH-HSC-CSCCCTTCC
T ss_pred             CEEccccChhhCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            5999999994 457889999765 643 456789988

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.68  E-value=0.072  Score=31.07  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=26.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+.|++ =-....|..|... |.. .+.-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~C   46 (46)
T 2em8_A           12 PYKCVECGKGYKRRLDLDFHQRV-HTG-EKLSGPSSG   46 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HHC-CCCCCSCCC
T ss_pred             CeECcccCchhCCHHHHHHHHHH-HcC-CCCCCCCCC
Confidence            699999999 4556889999875 654 356789988

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=92.62  E-value=0.065  Score=31.16  Aligned_cols=34  Identities=21%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|++|++. -....|..|.. .|.. .++-.|++|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~C   46 (46)
T 2ytg_A           12 PFKCGECGKSYNQRVHLTQHQR-VHTG-EKPSGPSSG   46 (46)
T ss_dssp             SEECTTTCCEESSSHHHHTTGG-GGSS-CCSSCSCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCC-CCCCCCCCC
Confidence            5999999994 45678889975 4654 356789988

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.42  E-value=0.04  Score=37.86  Aligned_cols=52  Identities=15%  Similarity=0.233  Sum_probs=34.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhh-hcCCCCccccCCcccc----chhhHHhhhhhcc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDE-HSCESKVTVCPICSVK----VARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~ee-H~~e~k~vVCPVCaa~----~s~d~l~HL~~qH   97 (171)
                      .|.|+.|++ =-....|..|+... |..+.....|++|...    -..++..|+...+
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccC
Confidence            599999999 55678899998851 3333334459999753    2457777776543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.23  E-value=0.063  Score=34.96  Aligned_cols=48  Identities=17%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             CCCCCCcccCCCCCCCCCHH-H------HHHhhhhhhcCC-CCccccCCccccchh
Q 030808           40 EDDVRPDFPCPYCYEDFDIA-S------LCSHLEDEHSCE-SKVTVCPICSVKVAR   87 (171)
Q Consensus        40 ddd~r~~F~CPfC~e~fD~~-~------L~~H~~eeH~~e-~k~vVCPVCaa~~s~   87 (171)
                      .++....+.||.|.+.+... .      +|..|....... .....||+|...+..
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            34566789999999855532 1      123344444432 356789999887643

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.96  E-value=0.16  Score=34.46  Aligned_cols=50  Identities=20%  Similarity=0.448  Sum_probs=38.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.| .|++ =-+...|..|+.. |.. .+...|++|...-  ..+|..|+...++
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   62 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMSM-HLG-LRPYGCGVCGKKFKMKHHLVGHMKIHTG   62 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHHH-HSC-CCSEECTTTSCEESSSHHHHHHHTTTCC
T ss_pred             CEec-cCCCccCCHHHHHHHHHH-cCC-CcCccCCCCCcccCCHHHHHHHHHHcCC
Confidence            6999 9999 5568889999885 433 3567999998764  5689999876554

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.95  E-value=0.066  Score=36.77  Aligned_cols=54  Identities=15%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             CCcccCCCCCCCC---CHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccc
Q 030808           44 RPDFPCPYCYEDF---DIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        44 r~~F~CPfC~e~f---D~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      +..+.|++|+..|   ....|..|... |.. .++-.|++|...-  ..+|..|+...|..
T Consensus        48 ~~~~~C~~C~~~f~f~~~~~l~~H~~~-H~~-~~~~~C~~C~k~f~~~~~L~~H~~~hh~~  106 (115)
T 2dmi_A           48 DNHETDNNNPKRWSKPRKRSLLEMEGK-EDA-QKVLKCMYCGHSFESLQDLSVHMIKTKHY  106 (115)
T ss_dssp             SCCCCCCCCCSCCSSCCCCCCCCCCCS-CCC-CSSCBCSSSCCBCSSHHHHHHHHHHTTTT
T ss_pred             CCCccCCCCCcccccccHHHHHHHhhc-cCC-CcceECCCCCCccCCHHHHHHHHHHhCCc
Confidence            4456799999976   67788888755 543 3567999997763  56899998776643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=91.84  E-value=0.16  Score=34.95  Aligned_cols=51  Identities=20%  Similarity=0.389  Sum_probs=37.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|+.|++ --+...|..|+.. |.. .+.-.|++  |...-  ..++..|+...++
T Consensus        34 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~   89 (124)
T 1ubd_C           34 VHVCAECGKAFVESSKLKRHQLV-HTG-EKPFQCTFEGCGKRFSLDFNLRTHVRIHTG   89 (124)
T ss_dssp             CEECTTTCCEESSHHHHHHHGGG-TSC-CCCEECCSTTCCCEESCHHHHHHHHHHHHC
T ss_pred             CeECCCCCchhCCHHHHHHHHHH-cCC-CCCeeCCCCCCcCccCCHHHHHHHHHHhCC
Confidence            699999999 4567889999874 433 35678987  97653  5678888876554

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=91.52  E-value=0.13  Score=30.37  Aligned_cols=37  Identities=27%  Similarity=0.267  Sum_probs=28.2

Q ss_pred             CCcccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCcc
Q 030808           44 RPDFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICS   82 (171)
Q Consensus        44 r~~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCa   82 (171)
                      ...|.|++|++. -....|..|... |.. .++-.|++|.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C~   47 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLS-HSG-EKPYSSGPSS   47 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG-SCS-CCCCCSCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHh-cCC-CCCccCCCCC
Confidence            346999999994 467889999764 544 3567899995

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=91.49  E-value=0.37  Score=31.74  Aligned_cols=50  Identities=18%  Similarity=0.406  Sum_probs=37.4

Q ss_pred             CcccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhc
Q 030808           45 PDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQ   96 (171)
Q Consensus        45 ~~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~q   96 (171)
                      ..|.||+  |++ --....|..|+.. |.. .+.-.|++|...-  ..+|..|+...
T Consensus        44 ~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~H   98 (100)
T 2ebt_A           44 KPYKCTWEGCDWRFARSDELTRHYRK-HTG-AKPFQCGVCNRSFSRSDHLALHMKRH   98 (100)
T ss_dssp             CCEECCSSSCCCEESSHHHHHHHHHH-HTS-CCSCBCSSSCCBCSSHHHHHHHHHHH
T ss_pred             CCeeCCCCCCCCccCCHHHHHHHHHH-hCC-CCCeECCCCcCccCCHHHHHHHHHHh
Confidence            3599986  999 5577889999865 443 3567899997753  56888888654

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=91.01  E-value=0.071  Score=39.04  Aligned_cols=46  Identities=30%  Similarity=0.748  Sum_probs=32.6

Q ss_pred             ccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           31 RLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        31 ~~g~e~~~~ddd-~r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .+.+||++-|++ ..-.|+|| ||.  .++...|-.        ..-.|.||-|+-.+
T Consensus         7 eV~LeDm~~de~~~~y~ypCr-CGd~F~IteedLe~--------ge~iv~C~sCSL~I   55 (89)
T 2jr7_A            7 EVEIEDFQYDEDSETYFYPCP-CGDNFSITKEDLEN--------GEDVATCPSCSLII   55 (89)
T ss_dssp             EEETTTSEEETTTTEEEEECT-TSSEEEEEHHHHHH--------TCCEEECTTTCCEE
T ss_pred             EEEHHHcEEcCCCCEEEEcCC-CCCEEEECHHHHhC--------CCEEEECCCCccEE
Confidence            355677665433 35689999 999  778888853        12368899999876

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=90.94  E-value=0.3  Score=35.00  Aligned_cols=51  Identities=24%  Similarity=0.393  Sum_probs=38.5

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhhhccc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|++|++.| +...|..|+.. |.. .+.-.|++  |...-  ..+|..|+...++
T Consensus        62 ~~~C~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~  117 (155)
T 2rpc_A           62 WEECPREGKSFKAKYKLVNHIRV-HTG-EKPFPCPFPGCGKIFARSENLKIHKRTHTG  117 (155)
T ss_dssp             BTTCTTSSCCCSSHHHHHHHTHH-HHC-CCSEECSCTTTCCEESCHHHHHHHHTTTCS
T ss_pred             ccCCCCcccccCCHHHHHHHHHh-cCC-CCcccCCcCCCCCccCCHHHHHHHHHhhCC
Confidence            38999999944 67889999986 433 45678998  97763  5688999876554

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=90.91  E-value=0.097  Score=37.75  Aligned_cols=46  Identities=30%  Similarity=0.743  Sum_probs=32.3

Q ss_pred             ccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           31 RLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        31 ~~g~e~~~~ddd-~r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .+.+||++-|++ ..-.|+|| ||.  .++...|..        ..-.|.||-|+-++
T Consensus        14 ev~LeDm~~de~~~~y~y~Cr-CGd~F~it~edL~~--------ge~iv~C~sCSL~I   62 (83)
T 1wge_A           14 EVEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLEN--------GEDVATCPSCSLII   62 (83)
T ss_dssp             EEEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHT--------TCCEEECTTTCCEE
T ss_pred             EEEHHHceEccCCCEEEEeCC-CCCEEEECHHHHhC--------CCEEEECCCCceEE
Confidence            355677765444 34589999 998  777777752        12368899999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=90.70  E-value=0.2  Score=36.91  Aligned_cols=52  Identities=27%  Similarity=0.418  Sum_probs=40.9

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhcccc
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHGH   99 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~~   99 (171)
                      .|.|++|++. -....|..|.. .|..+ ++-.|++|...-  ..+|..|+...|+-
T Consensus        50 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~C~k~F~~~~~L~~H~~~hh~~  104 (133)
T 2lt7_A           50 KYPCRYCEKVFPLAEYRTKHEI-HHTGE-RRYQCLACGKSFINYQFMSSHIKSVHSQ  104 (133)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH-HHHTC-CCEEESSSCCEESSHHHHHHHHHHHTCC
T ss_pred             CeeCCccCeecccccchhhhcc-ccCCC-ccccCCCCCCCcCCHHHHHHHhHHhcCC
Confidence            5999999994 46788999975 57654 567999997753  66899999888853

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.34  E-value=0.2  Score=30.65  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.1

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES   73 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~   73 (171)
                      -|.||.|-+ =-+...|..|-+..|..+.
T Consensus         5 GFiCP~C~~~l~s~~~L~~Hye~~H~~~~   33 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELFKHYEAVHDAGN   33 (34)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHTSSSC
T ss_pred             ccCCcHHHHHcCCHHHHHHHHHhccccCC
Confidence            599999999 5678899999999998653

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=90.30  E-value=0.32  Score=31.36  Aligned_cols=52  Identities=23%  Similarity=0.485  Sum_probs=37.8

Q ss_pred             CCcccCCC--CCCCC-CHHHHHHhhhhhhcCCCCccccC--Cccccc--hhhHHhhhhhcc
Q 030808           44 RPDFPCPY--CYEDF-DIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        44 r~~F~CPf--C~e~f-D~~~L~~H~~eeH~~e~k~vVCP--VCaa~~--s~d~l~HL~~qH   97 (171)
                      ...|.|++  |++.| ....|..|+.. |.. .+.-.||  +|...-  ..++..|+...+
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~   61 (89)
T 2wbs_A            3 TATHTCDYAGCGKTYTKSSHLKAHLRT-HTG-EKPYHCDWDGCGWKFARSDELTRHYRKHT   61 (89)
T ss_dssp             CCCEECCSTTTCCEESSHHHHHHHHTT-SCS-SCCEECCSTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCCeeCCCCCCCCcCCCHHHHHHHHHh-cCC-CCCcCCCCCCCCCccCCHHHHHHHHHHcC
Confidence            35799999  99944 67889999875 433 4567897  597653  567888886544

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=90.28  E-value=0.75  Score=28.85  Aligned_cols=50  Identities=20%  Similarity=0.375  Sum_probs=36.3

Q ss_pred             CCCcccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhh
Q 030808           43 VRPDFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHIT   94 (171)
Q Consensus        43 ~r~~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~   94 (171)
                      ....|.|++  |++ =-....|..|... |.. .+.-.|++  |...-  ..+|..|+.
T Consensus        14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           14 RIRSHICSHPGCGKTYFKSSHLKAHTRT-HTG-EKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCCEECSSTTTCCEESSHHHHHHHHHH-HSS-SCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             ccCceeCCCCCCccccCCHHHHHHHHHh-cCC-CCCccCCCCCCCcccCCHHHHHhHhh
Confidence            345799999  999 4467889999864 543 45678976  97763  557777764

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=90.20  E-value=0.34  Score=27.83  Aligned_cols=33  Identities=21%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQRI-HTGE-NPSGPSS   45 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHGG-GSSS-CCCSSSC
T ss_pred             CcCCCCCCchhCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            59999999955 56788899765 6544 5567775

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=90.06  E-value=0.34  Score=32.84  Aligned_cols=50  Identities=24%  Similarity=0.509  Sum_probs=29.4

Q ss_pred             cccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccC--Cccccc--hhhHHhhhhhcc
Q 030808           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCP--ICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        46 ~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCP--VCaa~~--s~d~l~HL~~qH   97 (171)
                      .|.|++  |++ =-+...|..|+.. |.. .+...|+  +|...-  ..+|..|+...+
T Consensus         6 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~~~C~~~f~~~~~l~~H~~~h~   62 (119)
T 2jp9_A            6 PFMCAYPGCNKRYFKLSHLQMHSRK-HTG-EKPYQCDFKDCERRFSRSDQLKRHQRRHT   62 (119)
T ss_dssp             CBCCCSTTSCCCBSCHHHHHHHHHH-HHT-TCCEECCSTTCCCEESSHHHHHHHHHHHH
T ss_pred             eeeCCCCCCcchhCCHHHHHHHHHh-hCC-CCCccCCCCCCcCccCCHHHHHHHHHHcC
Confidence            477776  777 3456677777664 332 3345677  575542  456667766543

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.92  E-value=0.27  Score=28.39  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-~~~~C~~   45 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQKT-HTGE-KPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH-HCCC-CCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            599999999 4567788899865 6543 5567775

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=89.86  E-value=0.12  Score=32.70  Aligned_cols=35  Identities=20%  Similarity=0.452  Sum_probs=25.7

Q ss_pred             cccCCCCCCCCCHHHHHHhhhhhhcCCCCccccCCcccc
Q 030808           46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVK   84 (171)
Q Consensus        46 ~F~CPfC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~   84 (171)
                      .|.||.|+..|....-..   ..|.. .++-.|++|...
T Consensus        14 ~~~C~~C~k~F~~~~~l~---~~H~~-~k~~~C~~C~k~   48 (62)
T 1vd4_A           14 SFKCPVCSSTFTDLEANQ---LFDPM-TGTFRCTFCHTE   48 (62)
T ss_dssp             EEECSSSCCEEEHHHHHH---HEETT-TTEEBCSSSCCB
T ss_pred             CccCCCCCchhccHHHhH---hhcCC-CCCEECCCCCCc
Confidence            599999999887655333   55654 467899999764

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=89.82  E-value=0.44  Score=32.29  Aligned_cols=51  Identities=22%  Similarity=0.378  Sum_probs=38.7

Q ss_pred             cccCC--CCCC-CCCHHHHHHhhhhhhcCCCCccccCCccccc--hhhHHhhhhhccc
Q 030808           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        46 ~F~CP--fC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~--s~d~l~HL~~qH~   98 (171)
                      .|.|+  .|++ --+...|..|+.. |.. .+.-.|++|...-  ..++..|+...++
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~~-h~~-~~~~~C~~C~~~f~~~~~l~~H~~~h~~   91 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQRR-HTG-VKPFQCKTCQRKFSRSDHLKTHTRTHTG   91 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH-HHC-CCCEECTTTCCEESCHHHHHHHHHHHHT
T ss_pred             CccCCCCCCcCccCCHHHHHHHHHH-cCC-CCCccCCccCchhCCHHHHHHHHHHhcC
Confidence            59999  5999 5568899999886 433 4567899998763  5688899876543

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=89.60  E-value=0.078  Score=38.27  Aligned_cols=46  Identities=30%  Similarity=0.767  Sum_probs=31.9

Q ss_pred             ccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           31 RLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        31 ~~g~e~~~~ddd-~r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .+.+||++-|++ ..-.|+|| ||.  .++...|..        ..-.|.||-|+-.+
T Consensus         7 ev~leDm~~de~~~~y~ypCr-CGd~F~it~edL~~--------ge~iv~C~sCSL~I   55 (83)
T 1yop_A            7 EIEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFE--------GEKVAVCPSCSLMI   55 (83)
T ss_dssp             CCBGGGSEEETTTTEEEEEET-TTEEEEEEHHHHHT--------TCCEEECSSSCCEE
T ss_pred             EEEHHHcEEcCCCCEEEEeCC-CCCeEEECHHHHhC--------CCEEEECCCCccEE
Confidence            345666664443 34689999 999  777778842        12468899999875

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.14  E-value=0.48  Score=27.28  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=23.9

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQR-VHTGE-KPSGPSS   45 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGG-GGCCC-CCCCCCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCCC-CCCCCCC
Confidence            59999999954 5677889975 46544 4566765

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.92  E-value=0.22  Score=30.79  Aligned_cols=41  Identities=17%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             CCCCCcccCCCCCCCCCHHH-------HHHhhhhhhcCC-CCccccCCc
Q 030808           41 DDVRPDFPCPYCYEDFDIAS-------LCSHLEDEHSCE-SKVTVCPIC   81 (171)
Q Consensus        41 dd~r~~F~CPfC~e~fD~~~-------L~~H~~eeH~~e-~k~vVCPVC   81 (171)
                      ++....+.||.|.+.+....       .+..|....... .+...||+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34566889999988554321       122344444322 245678887

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.84  E-value=0.14  Score=32.66  Aligned_cols=19  Identities=16%  Similarity=0.625  Sum_probs=13.9

Q ss_pred             CCCCCCCcccCCCCCCCCC
Q 030808           39 VEDDVRPDFPCPYCYEDFD   57 (171)
Q Consensus        39 ~ddd~r~~F~CPfC~e~fD   57 (171)
                      ..++....+.||.|.+.+.
T Consensus        13 ~~~~~~~~~~C~IC~~~~~   31 (63)
T 2ysj_A           13 FVNKLQEEVICPICLDILQ   31 (63)
T ss_dssp             CCCCCCCCCBCTTTCSBCS
T ss_pred             HHHhCccCCCCCcCCchhC
Confidence            3345677899999988554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.46  E-value=0.27  Score=25.32  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=19.9

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCE   72 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e   72 (171)
                      .|.|+.|+..| ....|..|+...|..+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CcCCcccCcccCChHHHHHHHHHHccCC
Confidence            48899999955 5578888866666543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=88.43  E-value=0.26  Score=34.24  Aligned_cols=29  Identities=31%  Similarity=0.724  Sum_probs=25.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESK   74 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k   74 (171)
                      .|.|++|++ =.....|..|++..|..|.+
T Consensus        56 ~~~C~~C~k~F~~~~~L~~H~~~~H~~E~R   85 (85)
T 2lv2_A           56 VFPCKYCPATFYSSPGLTRHINKCHPSENR   85 (85)
T ss_dssp             SEECTTSSCEESSHHHHHHHHHTTCTTCCC
T ss_pred             ccCCCCCCCEeCCHHHHHHhCcccCcCCCC
Confidence            599999999 55788999999999998864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.36  E-value=0.43  Score=27.50  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=23.8

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++. -....|..|... |..+ +.-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQRI-HRGE-KPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHGG-GCSC-CCCSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHhH-hCCC-CCCCCCC
Confidence            5999999994 456888899664 6543 4566764

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.36  E-value=0.49  Score=27.21  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=23.9

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|.. .|..+ ++-.|+|
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~~   45 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQK-IHTGE-RPSGPSS   45 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHT-TTSCC-CCSCSCC
T ss_pred             CEECCccCcccCCHHHHHHHHH-HhCCC-CCCCCCC
Confidence            59999999954 5678889976 46543 5567775

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.28  E-value=0.43  Score=27.39  Aligned_cols=33  Identities=27%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2eow_A           12 PYKCNECGKAFRARSSLAIHQA-THSGE-KPSGPSS   45 (46)
T ss_dssp             CEECTTSCCEESSHHHHHHHHH-HHCCC-SCSCTTC
T ss_pred             CeeccccCChhcCHHHHHHHHH-HcCCC-CCCCCCC
Confidence            599999999 456778889976 46543 5567775

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=88.22  E-value=0.48  Score=32.67  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=27.6

Q ss_pred             CCCCcccCCCCC------------CCCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           42 DVRPDFPCPYCY------------EDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        42 d~r~~F~CPfC~------------e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +....|.||.|.            -.|+...+..++..       ...||+|....
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l   58 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-------SPTDPFNRQML   58 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-------CSBCTTTCCBC
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-------CCCCCCCcCCC
Confidence            456789999984            35777778888764       35899998765

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=88.01  E-value=0.66  Score=33.06  Aligned_cols=38  Identities=18%  Similarity=0.232  Sum_probs=26.8

Q ss_pred             CCCCCcccCCCCCC-------------CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           41 DDVRPDFPCPYCYE-------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        41 dd~r~~F~CPfC~e-------------~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      .+....|.||.|.+             .|+...+..++..       ...||+|....
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-------~~~cP~~~~~l   67 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-------DQTDPFNRSPL   67 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-------SCBCTTTCSBC
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-------CCCCCCCCCCC
Confidence            34567999999843             4666666666653       35899998865

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.99  E-value=0.5  Score=27.18  Aligned_cols=33  Identities=24%  Similarity=0.328  Sum_probs=23.5

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRG-IHTGE-KPSGPSS   45 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT-TTSCS-CCSSTTC
T ss_pred             CeECCCCCcccCChhHHHHHhH-hcCCC-CCCCCCC
Confidence            59999999954 5677888964 46543 5567765

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.95  E-value=0.53  Score=27.06  Aligned_cols=33  Identities=21%  Similarity=0.230  Sum_probs=23.6

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++. -....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRG-IHTGE-KPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHT-TTTTS-SCCCCSC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-hhCCC-CCCCCCC
Confidence            5999999994 45677888965 46543 5567765

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.93  E-value=0.61  Score=26.89  Aligned_cols=33  Identities=27%  Similarity=0.311  Sum_probs=23.6

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|+.|++. -....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQRV-HTGE-KPSGPSS   45 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGGG-GTTC-CCSSCCC
T ss_pred             CCCCCCCCcccCCHHHHHHHHHh-cCCC-CCCCCCC
Confidence            5999999994 456788899754 6543 5566764

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=87.88  E-value=0.42  Score=27.60  Aligned_cols=33  Identities=24%  Similarity=0.236  Sum_probs=24.1

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2emj_A           12 PFECAECGKSFSISSQLATHQRI-HTGE-KPSGPSS   45 (46)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH-HTTS-CSSSSCC
T ss_pred             CEECCCCCcccCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            599999999 4566788899764 6543 4567775

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=87.85  E-value=0.51  Score=35.06  Aligned_cols=52  Identities=19%  Similarity=0.305  Sum_probs=39.8

Q ss_pred             CcccC--CCCCC-CCCHHHHHHhhhhhhcCCCCccccCC--ccccc--hhhHHhhhhhccc
Q 030808           45 PDFPC--PYCYE-DFDIASLCSHLEDEHSCESKVTVCPI--CSVKV--ARDMLSHITLQHG   98 (171)
Q Consensus        45 ~~F~C--PfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV--Caa~~--s~d~l~HL~~qH~   98 (171)
                      ..|.|  +.|++ =-+...|..|+.. |.. .++-.||+  |...-  ..+|..|+...++
T Consensus       103 ~~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~  161 (190)
T 1tf6_A          103 CVYVCHFENCGKAFKKHNQLKVHQFS-HTQ-QLPYECPHEGCDKRFSLPSRLKRHEKVHAG  161 (190)
T ss_dssp             SCCEECSSSSCEECSSHHHHHHHHGG-GSS-SCSSBCCSSSCCCBCSSHHHHHHHHTSSCS
T ss_pred             ceeeCCCCCCccccCCHHHHHHHHHH-hCC-CCCccCCCCCCCchhcCHHHHHHHHHHhCC
Confidence            35999  77999 5578889999875 543 35678988  98763  5689999987666

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.84  E-value=0.51  Score=27.33  Aligned_cols=33  Identities=21%  Similarity=0.258  Sum_probs=23.9

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|+.|++. -....|..|... |..+ +.-.||+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHSV-HSGE-RPSGPSS   45 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTTT-TTSC-CSCTTSC
T ss_pred             ccCCCCCCcccCcHHHHHHHHHh-cCCC-CCCCCCC
Confidence            5999999994 456778899754 6543 4567775

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.76  E-value=0.64  Score=26.81  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=24.2

Q ss_pred             CcccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           45 PDFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        45 ~~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      ..|.|++|++.| ....|..|... |..+ ++-.|++
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2en9_A           11 KLFKCNECKKTFTQSSSLTVHQRI-HTGE-KPSGPSS   45 (46)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH-HTSS-CCCSCCC
T ss_pred             CCEECCccCcccCCHHHHHHHHHH-cCCC-CCCCCCC
Confidence            359999999944 56788889764 6543 5567765

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.66  E-value=0.46  Score=27.25  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=24.1

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++. -....|..|... |..+ ++-.|||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-kp~~C~~   45 (46)
T 2eor_A           12 PYNCEECGKAFIHDSQLQEHQRI-HTGE-KPSGPSS   45 (46)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH-HHSC-CCSSSTT
T ss_pred             CccCCCCCCCcCCHHHHHHHHHh-cCCC-CCCCCCC
Confidence            5999999994 456788899764 6543 4567775

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.50  E-value=0.11  Score=34.93  Aligned_cols=46  Identities=24%  Similarity=0.470  Sum_probs=27.2

Q ss_pred             CCCCCCCcccCCCCCCCCCHHHH--HHh-----hhhhhcCCCCccccCCccccch
Q 030808           39 VEDDVRPDFPCPYCYEDFDIASL--CSH-----LEDEHSCESKVTVCPICSVKVA   86 (171)
Q Consensus        39 ~ddd~r~~F~CPfC~e~fD~~~L--~~H-----~~eeH~~e~k~vVCPVCaa~~s   86 (171)
                      .+++....+.||.|.+.+....+  |.|     |......  +...||+|...+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~--~~~~CP~Cr~~~~   60 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR--ATPRCYICDQPTG   60 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHH--HCSBCSSSCCBCC
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHH--CCCcCCCcCcccc
Confidence            34456678999999885543211  222     3333321  2457999988764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=87.14  E-value=0.083  Score=36.07  Aligned_cols=46  Identities=20%  Similarity=0.447  Sum_probs=28.7

Q ss_pred             CCCCCCcccCCCCCCCCCH-HHH--HHh-----hhhhhcCCCCccccCCccccc
Q 030808           40 EDDVRPDFPCPYCYEDFDI-ASL--CSH-----LEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        40 ddd~r~~F~CPfC~e~fD~-~~L--~~H-----~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +++....|.||.|.+.|.. ..|  |.|     |...+-.......||+|....
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            3456778999999884332 222  334     445554444557999998764

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=87.07  E-value=0.19  Score=33.16  Aligned_cols=46  Identities=13%  Similarity=0.178  Sum_probs=27.0

Q ss_pred             CCCCCCcccCCCCCCCCCHHH--HHHh-----hhhhhcCCCCccccCCccccch
Q 030808           40 EDDVRPDFPCPYCYEDFDIAS--LCSH-----LEDEHSCESKVTVCPICSVKVA   86 (171)
Q Consensus        40 ddd~r~~F~CPfC~e~fD~~~--L~~H-----~~eeH~~e~k~vVCPVCaa~~s   86 (171)
                      +++....|.||.|.+-|....  -|.|     |-..+-. .....||+|...+.
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~-~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD-AGHKTCPKSQETLL   54 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT-TTCCBCTTTCCBCS
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHH-HCcCCCCCCcCCCC
Confidence            445677899999988443221  1222     3333332 23678999988753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.97  E-value=0.63  Score=26.72  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=23.6

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQV-IHTGE-KPSGPSS   45 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHT-TTCCS-CCSSCCC
T ss_pred             CeECCcCChhhCCHHHHHHHHH-HhCCC-CCCCCCC
Confidence            59999999955 5678888976 46443 4556764

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=86.49  E-value=0.54  Score=29.79  Aligned_cols=36  Identities=25%  Similarity=0.392  Sum_probs=28.2

Q ss_pred             cccCCC--CCC-CCCHHHHHHhhhhhhcCCCCccccCCccc
Q 030808           46 DFPCPY--CYE-DFDIASLCSHLEDEHSCESKVTVCPICSV   83 (171)
Q Consensus        46 ~F~CPf--C~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa   83 (171)
                      .|.|++  |++ =-....|..|+.. |..+ +.-.|++|..
T Consensus        38 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~C~k   76 (79)
T 2dlk_A           38 SFSCPEPACGKSFNFKKHLKEHMKL-HSDT-RDYICEFSGP   76 (79)
T ss_dssp             CEECSCTTTCCEESSHHHHHHHHHH-HHTS-CCCSCCSSSC
T ss_pred             CeECCCCCCcCccCCHHHHHHHHHH-hCCC-CCeeCCCCCC
Confidence            599999  999 4567889999974 5543 5678999964

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.46  E-value=1.5  Score=28.62  Aligned_cols=46  Identities=22%  Similarity=0.467  Sum_probs=27.4

Q ss_pred             CCCCcccCCCCCCCCCHHH--HHHh-----hhhhhcCC----CCccccCCccccchh
Q 030808           42 DVRPDFPCPYCYEDFDIAS--LCSH-----LEDEHSCE----SKVTVCPICSVKVAR   87 (171)
Q Consensus        42 d~r~~F~CPfC~e~fD~~~--L~~H-----~~eeH~~e----~k~vVCPVCaa~~s~   87 (171)
                      +....+.||.|.+.+....  -|.|     |...+...    .....||+|...+..
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            4566899999988554321  1222     33333222    347889999887643

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.38  E-value=0.53  Score=27.15  Aligned_cols=33  Identities=18%  Similarity=0.211  Sum_probs=24.1

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|.. .|.. .++-.||+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2ytp_A           12 HYECSECGKAFARKSTLIMHQR-IHTG-EKPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT-TTSC-CCCCSSCC
T ss_pred             CeECCcCCcccCCHHHHHHHHH-HhCC-CCCCCCCC
Confidence            599999999 456788899976 4654 35567764

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.98  E-value=0.67  Score=26.52  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=24.0

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~p~~C~~   45 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRR-IHTGE-KPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG-GTSSC-CSSCCCC
T ss_pred             CEECCCCChhhCChHHHHHHHH-hcCCC-CCcCCCC
Confidence            599999999 456778889975 56543 4567765

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=85.59  E-value=0.66  Score=23.43  Aligned_cols=24  Identities=29%  Similarity=0.703  Sum_probs=17.8

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhh
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEH   69 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH   69 (171)
                      .|.|+.|+..| ....|..|....|
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~   26 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHc
Confidence            48899999955 5578888876544

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=85.49  E-value=0.9  Score=22.87  Aligned_cols=24  Identities=29%  Similarity=0.629  Sum_probs=17.7

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHS   70 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~   70 (171)
                      .|.|+.|++.| ....|..|... |.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~-h~   26 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYRS-HT   26 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH-HS
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hc
Confidence            48999999955 56778888764 43

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=85.39  E-value=0.75  Score=25.78  Aligned_cols=32  Identities=22%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCP   79 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCP   79 (171)
                      .|.|++|++. -....|..|... |..+ ++-.||
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   42 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQRT-HAGE-SGPSSG   42 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHGG-GCCC-CSCCCC
T ss_pred             CccCCCcChhhCCHHHHHHHHHh-cCCC-CCCCCC
Confidence            5999999994 456778888754 5543 444554

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=85.33  E-value=0.91  Score=32.44  Aligned_cols=37  Identities=19%  Similarity=0.231  Sum_probs=26.3

Q ss_pred             CCCCcccCCCCCC------------CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           42 DVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        42 d~r~~F~CPfC~e------------~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +....|.||.|.+            .|+...+..++..       ...||+|....
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-------~~~cP~~~~~l   73 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-------SPTDPFNRQTL   73 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-------CSBCSSSCCBC
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-------CCCCCCCCCCC
Confidence            4567999999844            4566666666652       36899998764

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=85.08  E-value=0.55  Score=28.35  Aligned_cols=28  Identities=25%  Similarity=0.389  Sum_probs=23.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCES   73 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~   73 (171)
                      .|.||+|+. --....|..|+...|..+.
T Consensus        30 ~~~C~~C~~~f~~~~~l~~H~~~~H~~~~   58 (60)
T 2adr_A           30 PYPCGLCNRAFTRRDLLIRHAQKIHSGNL   58 (60)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCCSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHcCCcC
Confidence            699999999 4467899999988887653

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.94  E-value=0.56  Score=27.06  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=23.7

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|... |..+ +.-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~~   45 (46)
T 2eoz_A           12 PYSCNVCGKAFVLSAHLNQHLRV-HTQE-TLSGPSS   45 (46)
T ss_dssp             SEEETTTTEEESSHHHHHHHHHH-HSSC-CSSSCCC
T ss_pred             CeECcccChhhCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            599999999 5567788899764 6543 4556764

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.91  E-value=1.1  Score=25.89  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=23.5

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|... |..+ ++-.|+|
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRRI-HTGE-KPSGPSS   45 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-HSSC-CCSSCCC
T ss_pred             CcCCCCCCCeeCChHHHHHHHHH-hCCC-CCCCCCC
Confidence            59999999955 56788899764 6543 4556654

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.71  E-value=1.1  Score=25.61  Aligned_cols=33  Identities=24%  Similarity=0.176  Sum_probs=23.7

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|+.|++. -....|..|... |.. .++-.|+|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~   43 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTLQ-THS-DKSGPSSG   43 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHHH-HTC-TTCSSSCC
T ss_pred             CEECCCCCCeeCChHHHHHHHHh-hCC-CCCccCCC
Confidence            5999999995 456788889765 543 34566765

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=84.65  E-value=0.72  Score=35.11  Aligned_cols=32  Identities=25%  Similarity=0.378  Sum_probs=27.3

Q ss_pred             CCcccCCCCCC-CCCHHHHHHhhhhhhcCCCCc
Q 030808           44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKV   75 (171)
Q Consensus        44 r~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~   75 (171)
                      ...+.|=||.+ --+...+..||.+.|.++-..
T Consensus        13 ~~~~~CLFCd~~~~s~~~~l~H~k~~H~FD~~~   45 (121)
T 1wir_A           13 RQHTPCLFCDRLFASAEETFSHCKLEHQFNIDS   45 (121)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHHSSCCCHHH
T ss_pred             CCceeEecCCCcccCHHHHHHHHHHhcCCCHHH
Confidence            35699999999 678999999999999987544

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=84.51  E-value=0.44  Score=32.81  Aligned_cols=44  Identities=20%  Similarity=0.540  Sum_probs=27.4

Q ss_pred             CCCcccCCCCCCCCCHHHH------HHh-----hhhhhcCCCCccccCCccccchh
Q 030808           43 VRPDFPCPYCYEDFDIASL------CSH-----LEDEHSCESKVTVCPICSVKVAR   87 (171)
Q Consensus        43 ~r~~F~CPfC~e~fD~~~L------~~H-----~~eeH~~e~k~vVCPVCaa~~s~   87 (171)
                      ....+.||.|-+.++....      |-|     |-.... +..+..||+|...+..
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~-~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIR-TDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHT-TSSCSBCTTTCCBCSS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHH-hcCCCCCCCCCCccCC
Confidence            3457899999997754311      333     333332 2346789999987643

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.41  E-value=1  Score=25.88  Aligned_cols=33  Identities=24%  Similarity=0.401  Sum_probs=23.6

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|+.|++.| ....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQR-VHTGE-KPSGPSS   45 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHT-TTSSS-CCCCTTC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HcCCC-CCCCCCC
Confidence            59999999955 5678889965 56543 4566764

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.31  E-value=0.84  Score=26.08  Aligned_cols=33  Identities=24%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|... |..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2ytf_A           12 PFECSECQKAFNTKSNLIVHQRT-HTGE-KPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHT-SCSS-SSSCCCC
T ss_pred             CcCCCCCCcccCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            599999999 4567788899754 6543 4556765

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=84.30  E-value=0.26  Score=32.36  Aligned_cols=46  Identities=24%  Similarity=0.570  Sum_probs=27.5

Q ss_pred             CCCCcccCCCCCCCCCHHH-------HHHhhhhhhcCC-----CCccccCCccccchh
Q 030808           42 DVRPDFPCPYCYEDFDIAS-------LCSHLEDEHSCE-----SKVTVCPICSVKVAR   87 (171)
Q Consensus        42 d~r~~F~CPfC~e~fD~~~-------L~~H~~eeH~~e-----~k~vVCPVCaa~~s~   87 (171)
                      +....+.||.|.+.|....       +|..|...+-..     .....||+|...+..
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            4566899999987444321       123344443332     236789999887653

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=84.22  E-value=1.9  Score=28.35  Aligned_cols=46  Identities=26%  Similarity=0.483  Sum_probs=33.9

Q ss_pred             CCCCC-CHHHHHHhhhhhhcCCC-----CccccC--Ccccc--chhhHHhhhhhcc
Q 030808           52 CYEDF-DIASLCSHLEDEHSCES-----KVTVCP--ICSVK--VARDMLSHITLQH   97 (171)
Q Consensus        52 C~e~f-D~~~L~~H~~eeH~~e~-----k~vVCP--VCaa~--~s~d~l~HL~~qH   97 (171)
                      |++.| +..+|+.|+..+|....     .+.+|.  -|...  ....|+.||...|
T Consensus         9 C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A            9 CPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQH   64 (64)
T ss_dssp             CCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHHC
T ss_pred             CCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhccccC
Confidence            77744 56779999999998654     357786  67654  3567999998776

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=84.17  E-value=0.6  Score=29.80  Aligned_cols=29  Identities=31%  Similarity=0.554  Sum_probs=24.4

Q ss_pred             CcccCCCCCCC-CCHHHHHHhhhhhhcCCC
Q 030808           45 PDFPCPYCYED-FDIASLCSHLEDEHSCES   73 (171)
Q Consensus        45 ~~F~CPfC~e~-fD~~~L~~H~~eeH~~e~   73 (171)
                      ..|.||+|++. -....|..|+...|..+.
T Consensus        44 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~   73 (77)
T 2ct1_A           44 AKFHCPHCDTVIARKSDLGVHLRKQHSYSG   73 (77)
T ss_dssp             SSEECSSSSCEESSHHHHHHHHHHTSCCSC
T ss_pred             CccCCCCCCCccCCHHHHHHHHHHhCCCCC
Confidence            46999999994 468899999999998754

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.10  E-value=0.88  Score=26.17  Aligned_cols=33  Identities=21%  Similarity=0.250  Sum_probs=23.8

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++. -....|..|.. .|.. .++-.||+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~-~k~~~C~~   45 (46)
T 2em4_A           12 PYECIECGKAFKTKSSLICHRR-SHTG-EKPSGPSS   45 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH-HHSS-SSCCCCCC
T ss_pred             CcCCCCCCCccCCHHHHHHHHH-hcCC-CCCCCCCC
Confidence            5999999994 45678889976 4654 35567775

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.94  E-value=0.26  Score=32.37  Aligned_cols=47  Identities=23%  Similarity=0.612  Sum_probs=26.8

Q ss_pred             CCCCCcccCCCCCCCCCHHH-H-HHh-----hhhhhcC----CCCccccCCccccchh
Q 030808           41 DDVRPDFPCPYCYEDFDIAS-L-CSH-----LEDEHSC----ESKVTVCPICSVKVAR   87 (171)
Q Consensus        41 dd~r~~F~CPfC~e~fD~~~-L-~~H-----~~eeH~~----e~k~vVCPVCaa~~s~   87 (171)
                      ++....+.||.|.+.+.... | |.|     |...+..    +.....||+|...+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            34566899999988554321 1 222     2222221    2346789999887653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=83.89  E-value=0.88  Score=36.41  Aligned_cols=40  Identities=10%  Similarity=0.178  Sum_probs=29.5

Q ss_pred             CCCCCCcccCCCCC------------CCCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           40 EDDVRPDFPCPYCY------------EDFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        40 ddd~r~~F~CPfC~------------e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +.+.+..|.||.|.            -.|+...+..|+...+     . .||+|....
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~-----~-tcP~t~~~l  151 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-----H-FDPVTRSPL  151 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-----S-BCTTTCCBC
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC-----C-CCCCCcCCC
Confidence            34567899999974            4678888888887631     1 699998764

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.67  E-value=0.99  Score=25.42  Aligned_cols=32  Identities=19%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCP   79 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCP   79 (171)
                      .|.|++|++ =-....|..|... |..+ +.-.||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C~   44 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQRT-HTGE-SGPSSG   44 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHH-TTTS-SCSCCC
T ss_pred             CeECCCCCcccCCHhHHHHHHHH-hCCC-CCCCCC
Confidence            599999999 4567788899764 6543 344554

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.07  E-value=0.67  Score=26.70  Aligned_cols=34  Identities=24%  Similarity=0.245  Sum_probs=23.6

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|+.|++.| ....|..|.. .|....++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~~   46 (46)
T 2eoy_A           12 CFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSSG   46 (46)
T ss_dssp             CEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSCC
T ss_pred             CEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            59999999944 5578888974 4654235566764

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.79  E-value=0.99  Score=25.77  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=23.4

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++ =-....|..|.. .|..+ ++-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-k~~~C~~   45 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQR-IHTGE-KPSGPSS   45 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT-TTSSC-CSSCSCC
T ss_pred             CeECCCCCCccCCHHHHHHHHH-HcCCC-CCCCCCC
Confidence            599999999 445678888975 46443 4556764

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.37  E-value=1.4  Score=25.28  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=22.6

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCP   79 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCP   79 (171)
                      .|.|++|++.| ....|..|... |..+ +.-.||
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~   44 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKRV-HTGE-RSSGPS   44 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-CSSC-CSCSTT
T ss_pred             CcCCCCcCchhCCHHHHHHHHHH-hCCC-CCCCCC
Confidence            59999999954 56788889754 6543 455665

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.68  E-value=1.5  Score=24.61  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=21.7

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCP   79 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCP   79 (171)
                      .|.|++|++. -....|..|.. .|..+ +.-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~H~~~-~~~~C~   44 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTR-THTGE-SGPSSG   44 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHT-TTCCS-SSSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHhh-hcCCC-CCCCCC
Confidence            5999999994 45677888875 46443 344453

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.59  E-value=1.8  Score=23.99  Aligned_cols=31  Identities=26%  Similarity=0.504  Sum_probs=21.2

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCcccc
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVC   78 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVC   78 (171)
                      .|.|+.|++.| ....|..|... |..+ ++-.|
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-~~~~C   41 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQKM-HTVK-SGPSS   41 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH-TSCC-SSCCC
T ss_pred             CeECCCCCCccCCHHHHHHHHHH-hCCC-CCCCC
Confidence            59999999944 56778888764 6543 33344

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.50  E-value=1.6  Score=25.01  Aligned_cols=33  Identities=33%  Similarity=0.449  Sum_probs=22.9

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++.| ....|..|... |..+ +.-.|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~~   45 (46)
T 2emz_A           12 PFKCNECGKGFGRRSHLAGHLRL-HSRE-KSSGPSS   45 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHHH-HHHT-TCCCSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHHH-hCCC-CCCCCCC
Confidence            59999999944 56778889764 5433 4456664

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.02  E-value=0.49  Score=25.87  Aligned_cols=22  Identities=32%  Similarity=0.587  Sum_probs=17.8

Q ss_pred             cccCCCCCCCCCH--HHHHHhhhh
Q 030808           46 DFPCPYCYEDFDI--ASLCSHLED   67 (171)
Q Consensus        46 ~F~CPfC~e~fD~--~~L~~H~~e   67 (171)
                      .|.|++|+..|..  ..|..|...
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~~   32 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIWA   32 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHHH
T ss_pred             CeECCCCChhhccCHHHHHHHHHh
Confidence            5999999997666  588899753

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.88  E-value=1.3  Score=25.38  Aligned_cols=32  Identities=19%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCP   79 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCP   79 (171)
                      .|.|++|++. -....|..|... |..+ ++-.|+
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~-H~~~-k~~~C~   44 (46)
T 2yto_A           12 PYKCSDCGKAFTRKSGLHIHQQS-HTGE-RHSGPS   44 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH-HTCC-CBTTTB
T ss_pred             CEECcccCCccCCHhHHHHHHHH-cCCC-CCCCCC
Confidence            5999999994 456788889754 6543 445564

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=80.84  E-value=1.2  Score=28.32  Aligned_cols=37  Identities=11%  Similarity=0.128  Sum_probs=28.4

Q ss_pred             CcccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCccc
Q 030808           45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV   83 (171)
Q Consensus        45 ~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa   83 (171)
                      ..|.|+.|++ --....|..|....|.  .+...|++|..
T Consensus        46 ~~~~C~~C~~~f~~~~~L~~H~~~h~~--~~~~~~~~~~~   83 (86)
T 1x6h_A           46 AAFVCSKCGKTFTRRNTMARHADNCAG--PDGVEGENSGP   83 (86)
T ss_dssp             CCEECSSSCCEESCHHHHHHHHHHCCC--CCSCCCCCCCC
T ss_pred             cceECCCCCChhCCHHHHHHHHHHccC--CCCcccCCCCC
Confidence            4699999999 4478899999877655  34567888854

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.74  E-value=1.5  Score=25.12  Aligned_cols=34  Identities=24%  Similarity=0.147  Sum_probs=25.7

Q ss_pred             cccCC--CCCC-CCCHHHHHHhhhhhhcCCCCccccCCc
Q 030808           46 DFPCP--YCYE-DFDIASLCSHLEDEHSCESKVTVCPIC   81 (171)
Q Consensus        46 ~F~CP--fC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVC   81 (171)
                      .|.|+  .|++ =.....|..|... |.. .++-.|++|
T Consensus        12 ~~~C~~~~C~k~f~~~~~L~~H~~~-H~~-~k~~~C~~C   48 (48)
T 2ent_A           12 PFACTWPGCGWRFSRSDELSRHRRS-HSG-VKPSGPSSG   48 (48)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHTT-SCC-CCSCSSCCC
T ss_pred             CeECCCCCCCCccCCHHHHHHHHHH-hCC-CCCCCCCCC
Confidence            59997  8999 4567889999765 554 456789988

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=80.55  E-value=0.73  Score=34.87  Aligned_cols=47  Identities=28%  Similarity=0.567  Sum_probs=26.1

Q ss_pred             cccCC--CCCCCCCHHHHHHhhhhhhcCCCCccccCCccccc-hhhHHhhhhh
Q 030808           46 DFPCP--YCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKV-ARDMLSHITL   95 (171)
Q Consensus        46 ~F~CP--fC~e~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~-s~d~l~HL~~   95 (171)
                      ...||  -|.+.+....|..|..  . =+-+.+.||-|...+ ..++..|+..
T Consensus        82 ~v~C~n~GC~~~~~~~~l~~H~~--~-C~~~~v~C~~C~~~~~r~~l~~H~~~  131 (170)
T 3hcs_A           82 MVKCPNEGCLHKMELRHLEDHQA--H-CEFALMDCPQCQRPFQKFHINIHILK  131 (170)
T ss_dssp             EEECCSTTCCCEEEGGGHHHHHT--T-CTTSEEECTTTCCEEEGGGHHHHHHH
T ss_pred             ccCCCCCCCCceecHhHHHHHHh--c-CCceeeECCCCChHHHHHHHHHHhhh
Confidence            35665  3666666666666642  1 122456677776643 4566666643

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=80.54  E-value=0.32  Score=32.21  Aligned_cols=45  Identities=22%  Similarity=0.495  Sum_probs=26.2

Q ss_pred             CCCCCCcccCCCCCCCCCHH-HH--HHh-----hhhhhcCCCCccccCCcccc
Q 030808           40 EDDVRPDFPCPYCYEDFDIA-SL--CSH-----LEDEHSCESKVTVCPICSVK   84 (171)
Q Consensus        40 ddd~r~~F~CPfC~e~fD~~-~L--~~H-----~~eeH~~e~k~vVCPVCaa~   84 (171)
                      .++....+.||.|.+.|... .|  |.|     |....-.......||+|...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~   61 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN   61 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred             cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence            34566789999998854432 12  223     33333322334689999875

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.49  E-value=0.96  Score=25.88  Aligned_cols=33  Identities=24%  Similarity=0.327  Sum_probs=23.3

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhhhhcCCCCccccCC
Q 030808           46 DFPCPYCYED-FDIASLCSHLEDEHSCESKVTVCPI   80 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~eeH~~e~k~vVCPV   80 (171)
                      .|.|++|++. -....|..|.. .|..+ +.-.||+
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~-~H~~~-k~~~C~~   45 (45)
T 2epu_A           12 PFECTHCGKSFRAKGNLVTHQR-IHTGE-KSGPSSG   45 (45)
T ss_dssp             SEEETTTTEEESSHHHHHHHHT-TTSSC-CCCCSCC
T ss_pred             CccCCCCCCccCChHHHHHHHH-HhCCC-CCCCCCC
Confidence            5999999994 45677888965 46543 4566764

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=80.48  E-value=1  Score=22.51  Aligned_cols=22  Identities=23%  Similarity=0.353  Sum_probs=16.9

Q ss_pred             cccCCCCCCC-CCHHHHHHhhhh
Q 030808           46 DFPCPYCYED-FDIASLCSHLED   67 (171)
Q Consensus        46 ~F~CPfC~e~-fD~~~L~~H~~e   67 (171)
                      .|.|+.|++. .....|..|...
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~   24 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLRI   24 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHHH
Confidence            4789999994 467788888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	94.1
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	92.88
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	91.98
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	88.77
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	88.62
d1wira_	121	Protein arginine N-methyltransferase 3 {Mouse (Mus	88.57
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	87.61
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	86.59
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	85.78
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	85.0
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	84.17
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	82.96
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	81.94
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	80.33

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.0082  Score=40.70  Aligned_cols=45  Identities=31%  Similarity=0.758  Sum_probs=31.2

Q ss_pred             cCCCcCCCCCCC-CCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           32 LSIDDFEVEDDV-RPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        32 ~g~e~~~~ddd~-r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +.+||++-|++. .-+|+|| ||.  .+....|-++        .-.+.||-|+-.+
T Consensus         8 v~leD~~~dee~~~~~ypCp-CGd~F~it~~dLe~g--------e~V~~C~sCSL~i   55 (70)
T d1wgea1           8 VEIEDFQYDEDSETYFYPCP-CGDNFAITKEDLENG--------EDVATCPSCSLII   55 (70)
T ss_dssp             EEGGGSCCBTTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEECTTTCCEE
T ss_pred             EEeeeeeEeCCCCEEEeCCC-CCCeEEECHHHHhCC--------CeEEeCCCCceEE
Confidence            456777655443 5689999 998  6666777542        2245699999875

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.018  Score=38.07  Aligned_cols=45  Identities=27%  Similarity=0.580  Sum_probs=32.4

Q ss_pred             CCcCCCCCCCCCcccCCCCCC---CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           34 IDDFEVEDDVRPDFPCPYCYE---DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        34 ~e~~~~ddd~r~~F~CPfC~e---~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      +|+.+-+...++.|.||.|+.   .||+..|...       +...-.|-+|...+
T Consensus         2 ie~~~rd~~~~~~y~Cp~C~~~ys~Lda~~L~d~-------~~~~F~C~~C~~el   49 (62)
T d1vd4a_           2 IETDERDSTNRASFKCPVCSSTFTDLEANQLFDP-------MTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCCCSSSCCSSSEEECSSSCCEEEHHHHHHHEET-------TTTEEBCSSSCCBC
T ss_pred             cchhhhccccCCceECCCCCCCcchhhHHHhcCc-------CCCeEEecCCCCEE
Confidence            344444556689999999998   7777777653       34466899998776

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=0.018  Score=40.02  Aligned_cols=47  Identities=32%  Similarity=0.779  Sum_probs=31.9

Q ss_pred             hccCCCcCCCCCC-CCCcccCCCCCC--CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           30 DRLSIDDFEVEDD-VRPDFPCPYCYE--DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        30 ~~~g~e~~~~ddd-~r~~F~CPfC~e--~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      |.+.+||++-|++ ..-+|+|| ||.  .+....|-.+        .-.+.||-|+-++
T Consensus         5 dev~LeDm~~ded~~~~~ypCr-CGd~F~it~~dLe~g--------e~v~~C~sCSL~I   54 (82)
T d1ywsa1           5 DEIEIEDMTFEPENQMFTYPCP-CGDRFQIYLDDMFEG--------EKVAVCPSCSLMI   54 (82)
T ss_dssp             CEEETTTSEEETTTTEEEECCS-SSSCEEEEHHHHHTT--------CCEEEETTTTEEE
T ss_pred             cEEEecceEEeCCCCEEEeccc-cCCeEEEcHHHHhCC--------CeEEeCCCCceEE
Confidence            4456777775444 45689999 998  5666666542        2245699999886

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=88.77  E-value=0.074  Score=33.95  Aligned_cols=24  Identities=33%  Similarity=0.876  Sum_probs=20.3

Q ss_pred             CccccCCccccc--hhhHHhhhhhcc
Q 030808           74 KVTVCPICSVKV--ARDMLSHITLQH   97 (171)
Q Consensus        74 k~vVCPVCaa~~--s~d~l~HL~~qH   97 (171)
                      .++.||||.+.+  ++|+-+||-+.|
T Consensus        23 qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          23 QPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            357899998876  899999998888

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.62  E-value=0.13  Score=33.43  Aligned_cols=38  Identities=16%  Similarity=0.262  Sum_probs=25.8

Q ss_pred             CCCCcccCCCCCC------------CCCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           42 DVRPDFPCPYCYE------------DFDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        42 d~r~~F~CPfC~e------------~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      |....|.||.|.+            .|+..-|..++...      ...||+|...+
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~------~~~cP~c~~~l   52 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV------GHFNPVTRSPL   52 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT------CSSCTTTCCCC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC------CccCCCccccc
Confidence            3456889999854            45666677766543      34799998875

>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: variant C2H2 finger
domain: Protein arginine N-methyltransferase 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.57  E-value=0.16  Score=36.90  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             CCCCcccCCCCCC-CCCHHHHHHhhhhhhcCCCCcc
Q 030808           42 DVRPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVT   76 (171)
Q Consensus        42 d~r~~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~v   76 (171)
                      +..+..+|-||.+ --++..+..||.+.|.++-..+
T Consensus        11 ~e~~~~~CLFCd~~f~s~~~~l~H~k~~H~FD~~~~   46 (121)
T d1wira_          11 HGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSM   46 (121)
T ss_dssp             CCCCCEECSSSCCEESSHHHHHHHHHHSSCCCHHHH
T ss_pred             CCcccceecccCCccCCHHHHHHHHHHhhCCCHHHH
Confidence            3456778999999 6689999999999999976654

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=0.17  Score=28.83  Aligned_cols=27  Identities=33%  Similarity=0.678  Sum_probs=23.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCE   72 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e   72 (171)
                      -|.|+||.- .-|.+.|..|+...|.-|
T Consensus         2 py~cqyc~yrsadssnlkthiktkhske   29 (30)
T d1klra_           2 TYQCQYCEFRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSSC
T ss_pred             CccccccccccccchhhhhhhhcccccC
Confidence            378999977 999999999999999765

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.37  Score=28.92  Aligned_cols=46  Identities=20%  Similarity=0.438  Sum_probs=35.9

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcCCCCccccCCcccc--chhhHHhhhh
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSVK--VARDMLSHIT   94 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~--~s~d~l~HL~   94 (171)
                      .|.|. ||+ =-....|..|. ..|..+ ++-.|++|...  -..+|..|+.
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~-~~Ht~e-kpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHM-SMHLGL-RPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHH-HHHSCC-CSEECTTTSCEESSSHHHHHHHT
T ss_pred             CCCCC-CCCeECCHHHhHHHh-hccccc-cCCcCCCcCCEecCHHHHHHHHh
Confidence            58996 999 55678899996 578664 67799999775  3668888874

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.78  E-value=0.25  Score=28.58  Aligned_cols=26  Identities=19%  Similarity=0.512  Sum_probs=20.8

Q ss_pred             cccCCCCCCCC-CHHHHHHhhhhhhcC
Q 030808           46 DFPCPYCYEDF-DIASLCSHLEDEHSC   71 (171)
Q Consensus        46 ~F~CPfC~e~f-D~~~L~~H~~eeH~~   71 (171)
                      -|.|++|++.| ....|..|+...|..
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CEeCCCCcccccchHHHHHHcccccCC
Confidence            59999999955 566788998888764

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.00  E-value=0.3  Score=26.88  Aligned_cols=23  Identities=30%  Similarity=1.078  Sum_probs=14.1

Q ss_pred             ccCCCCCCCCCH-HHHHHhhhhhh
Q 030808           47 FPCPYCYEDFDI-ASLCSHLEDEH   69 (171)
Q Consensus        47 F~CPfC~e~fD~-~~L~~H~~eeH   69 (171)
                      |+||||.++|.. ..+..|+.--|
T Consensus         2 ypcp~cfkeftrkdnm~ahvkiih   25 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVKIIH   25 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cCCchhhHHhccccCceEEEEEec
Confidence            678888886654 34555555444

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.17  E-value=0.45  Score=30.49  Aligned_cols=38  Identities=21%  Similarity=0.468  Sum_probs=23.7

Q ss_pred             CCCCcccCCCCCCC------------CCHHHHHHhhhhhhcCCCCccccCCccccc
Q 030808           42 DVRPDFPCPYCYED------------FDIASLCSHLEDEHSCESKVTVCPICSVKV   85 (171)
Q Consensus        42 d~r~~F~CPfC~e~------------fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~   85 (171)
                      |...+|.||.|.+-            |...-|..+++      .+...||+|...+
T Consensus         4 eiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~------~~~~~cP~~~~~l   53 (78)
T d1t1ha_           4 EFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLD------AGHKTCPKSQETL   53 (78)
T ss_dssp             CCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHT------TTCCBCTTTCCBC
T ss_pred             CCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHH------HCCCCCCcccccC
Confidence            45678999999662            34444444433      2345799998764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.96  E-value=0.66  Score=26.27  Aligned_cols=26  Identities=23%  Similarity=0.404  Sum_probs=23.0

Q ss_pred             cccCCCCCC-CCCHHHHHHhhhhhhcC
Q 030808           46 DFPCPYCYE-DFDIASLCSHLEDEHSC   71 (171)
Q Consensus        46 ~F~CPfC~e-~fD~~~L~~H~~eeH~~   71 (171)
                      .|+|+-|++ =-+..+..-|+..+|..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvmadhn~   28 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMANHNS   28 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHHHTCC
T ss_pred             ceechhHHHHHhhccCceEEEeecccC
Confidence            699999999 56789999999999975

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.94  E-value=0.55  Score=31.85  Aligned_cols=39  Identities=18%  Similarity=0.228  Sum_probs=25.2

Q ss_pred             CCCCCcccCCCCCC-------------CCCHHHHHHhhhhhhcCCCCccccCCccccch
Q 030808           41 DDVRPDFPCPYCYE-------------DFDIASLCSHLEDEHSCESKVTVCPICSVKVA   86 (171)
Q Consensus        41 dd~r~~F~CPfC~e-------------~fD~~~L~~H~~eeH~~e~k~vVCPVCaa~~s   86 (171)
                      .+....|.||.|++             -|+...+..|+.       ++..||+|...++
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~-------~~~~~P~~~~~l~   68 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLL-------SDQTDPFNRSPLT   68 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTT-------TSCBCTTTCSBCC
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHH-------hcCCccccccccc
Confidence            35677899999965             244444444443       2347999988764

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=80.33  E-value=0.5  Score=26.14  Aligned_cols=21  Identities=29%  Similarity=0.585  Sum_probs=14.9

Q ss_pred             cccCCCCCCCCCH-HHHHHhhh
Q 030808           46 DFPCPYCYEDFDI-ASLCSHLE   66 (171)
Q Consensus        46 ~F~CPfC~e~fD~-~~L~~H~~   66 (171)
                      -|.||+|+..|.. ..|..|..
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            3889999996665 45666653