Citrus Sinensis ID: 030820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLESLNG
Secondary Structure (PSIPRED)
cccccccccccccEEEccccccccHHHHHHHHHccccccccccHHHHHcccccccccccccccccEEEcccccccccccccccccccccccccccEEEccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHccccEEEEEHHHHHHHHHHcccccccccHHHHHcccEEEEEEEcccccccccccccccccccccHHHcccccccccccccccccccHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mkiqcdvcekapatvICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLsnklppcdicqeKAAFIFCVEDralfckdcdepihspgslsanHQRFLATGIRVALSsscskdaerniseppnqqasqtsvkmptqqssgisspwavddflqfsdfessgksnssleslng
Flexible Loop (DISEMBL)
mkiqcdvcekAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNIseppnqqasqtsvKMPTQQSSGISSPWAVDDFLQFSdfessgksnssleslng
Low Complexity Region (SEG)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFessgksnssleslng
Disordered region (IsUnstruct)
***QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIH*******NHQRFLATGIRVA*****************************************V**FL********************
Disordered Region (DISOPRED)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSP****ANHQRFLATG************************************************FLQFS*****************
Disordered Region (DISEMBL)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVAL***********************************SSPWAVDDFLQFSDF***************
Disordered Region (DISPRO)
*KIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVAL*************************************PWAVDD*LQF*DFE**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLESLNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q9SID1	238	Salt tolerance-like prote	yes	no	0.959	0.689	0.690	5e-60
Q96288	248	Salt tolerance protein OS	no	no	0.941	0.649	0.702	5e-57
Q9SYM2	299	Probable salt tolerance-l	no	no	0.631	0.361	0.601	2e-33
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.654	0.338	0.547	4e-29
Q0IGM7	242	B-box zinc finger protein	no	no	0.637	0.450	0.536	4e-27
O50055	355	Zinc finger protein CONST	no	no	0.649	0.312	0.385	2e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.485	0.282	0.423	1e-14
Q940T9	362	Zinc finger protein CONST	no	no	0.573	0.270	0.392	6e-14
Q96502	347	Zinc finger protein CONST	no	no	0.485	0.239	0.423	3e-13
Q39057	373	Zinc finger protein CONST	no	no	0.631	0.289	0.325	1e-12

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  229 bits (585), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 131/168 (77%), Gaps = 4/168 (2%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPAT+ICCADEAALCAKCDVEVHAANKLASKHQRL L  LS K PPCDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNIS 119
            EKAAFIFCVEDRAL C+DCDE  H+P + SANHQRFLATGIRVALSS SC+++ E+N  
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query: 120 EPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLE 167
           +P NQQ+     K PTQQ +  S  WA D+F  +SD + S K    L+
Sbjct: 121 DPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNKEKEQLD 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  219 bits (559), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 131/168 (77%), Gaps = 7/168 (4%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALC +CD+E+HAANKLASKHQRL L  LS K P CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNIS 119
           QEKAAFIFCVEDRAL C+DCDE IH   S SANHQRFLATGI+VAL+S+ CSK+ E+N  
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query: 120 EPPN--QQASQTSVKMPTQQSSGISS----PWAVDDFLQFSDFESSGK 161
           EP N  Q+A+Q   K  +QQ    SS    PWAVDDF  FSD ES+ K
Sbjct: 121 EPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDK 168

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 80/108 (74%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQC+VCE A ATV+CCADEAALC  CD ++HAANKLA KHQR+ L   ++ +P CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS 108
           QE + F FC++DRAL C+ CD  IH+     + HQRFL TGI+V L S
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLES 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 3/115 (2%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-C 57
           MKI+CDVC+K  A+V C ADEA+LC  CD +VH ANKLASKH R  LL    SN   P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 58  DICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSK 112
           DICQ+K A +FC +DRA+ CKDCD  IH+    +  H RFL TG++++ +SS  K
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 72/110 (65%), Gaps = 1/110 (0%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNK-LPPCDI 59
           MKI C VC+K  A+V CCADEAALC  CD  VH ANKLA KH R  L   + K  P CDI
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 60  CQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS 109
           C E+ A +FC EDRA+ C++CD PIH     +  H RFL TG++++ S S
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPS 110

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 11/122 (9%)

Query: 5   CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
           CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query: 65  AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI-RVALSSSCSKDA-ERNISEPP 122
           A  FC  D A  C  CD  IHS   L+  HQR     I   + SS+ +  + E  +++P 
Sbjct: 63  AAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPE 122

Query: 123 NQ 124
           N+
Sbjct: 123 NR 124

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 5  CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
          CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C++  
Sbjct: 8  CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query: 65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
          A + C  D A  C  CD  IHS   LS  H+R
Sbjct: 59 AHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 77.0 bits (188), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 5   CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
           CD C+ A A + C  D A LC  CD +VHAANKLAS+H R+ +         C++C++  
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAP 56

Query: 65  AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCS 111
           A + C  D A  C  CD  IHS   L+  H+R   T    ++SS  S
Sbjct: 57  AHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGS 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 5  CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
          CD C  A  TV C AD A LC  CD  VHAAN++AS+H+R+ +         C  C+   
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAP 66

Query: 65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
          A   C  D A  C  CD  IHS   L+  HQR
Sbjct: 67 AAFLCKADAASLCTACDAEIHSANPLARRHQR 98

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 5   CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
           CD C     TV C AD A LC  CD +VH+AN++AS+H+R+ +         C+ C+   
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAP 70

Query: 65  AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR---FLATGIRVALSSSCSKDAERNISEP 121
           A   C  D A  C  CD  +HS   L+  HQR      +G   +  ++    +E+ +++P
Sbjct: 71  AAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDP 130

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224133194	238	predicted protein [Populus trichocarpa]	0.976	0.701	0.832	1e-75
118486140	235	unknown [Populus trichocarpa]	0.964	0.702	0.819	6e-72
224093108	237	predicted protein [Populus trichocarpa]	0.923	0.666	0.849	7e-72
225433924	239	PREDICTED: salt tolerance-like protein [	0.970	0.694	0.810	1e-71
255587107	238	Salt-tolerance protein, putative [Ricinu	0.976	0.701	0.784	4e-71
307136260	237	salt-tolerance protein [Cucumis melo sub	0.976	0.704	0.790	8e-71
449454578	237	PREDICTED: salt tolerance protein-like [	0.976	0.704	0.784	2e-70
168480805	237	putative transcription factor [Cucumis s	0.976	0.704	0.778	8e-70
358249332	240	uncharacterized protein LOC100797515 [Gl	0.959	0.683	0.780	1e-68
302398757	239	COL domain class transcription factor [M	0.959	0.686	0.798	1e-68

>gi|224133194|ref|XP_002327983.1| predicted protein [Populus trichocarpa] gi|222837392|gb|EEE75771.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 148/167 (88%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCD+EVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVALSSSCSKD + N S 
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLATGIRVALSSSCSKDTQTNSSG 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLE 167
           PPNQ A QT +K+P QQ+S  ++ WAVDD LQFS+FESS      LE
Sbjct: 121 PPNQSAQQTPMKIPAQQTSSFATSWAVDDLLQFSEFESSTDKKEQLE 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486140|gb|ABK94913.1| unknown [Populus trichocarpa]

 Score =  275 bits (702), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 143/166 (86%), Gaps = 1/166 (0%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALC KCD+EVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCEKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVALSSSCSKD +++  E
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLATGIRVALSSSCSKDTQKSSLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSL 166
           PPNQ   QTS K+P Q +S   S WAVDDFLQFSD E S      L
Sbjct: 121 PPNQSEQQTS-KLPWQHASSFGSSWAVDDFLQFSDIEESTDKKEQL 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093108|ref|XP_002309796.1| predicted protein [Populus trichocarpa] gi|222852699|gb|EEE90246.1| predicted protein [Populus trichocarpa]

 Score =  274 bits (701), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 142/159 (89%), Gaps = 1/159 (0%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALC KCD+EVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCEKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVALSSSCSKD +++  E
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLATGIRVALSSSCSKDTQKSSLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESS 159
           PPNQ   QTS K+P Q +S   S WAVDDFLQFSD E S
Sbjct: 121 PPNQSEQQTS-KLPWQHASSFGSSWAVDDFLQFSDIEES 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433924|ref|XP_002268700.1| PREDICTED: salt tolerance-like protein [Vitis vinifera] gi|297743809|emb|CBI36692.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 137/169 (81%), Positives = 150/169 (88%), Gaps = 3/169 (1%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCE+APATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS G+L+ANHQRFLATGIRVALSS C+K+ +++ SE
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGNLAANHQRFLATGIRVALSSKCAKETDKSSSE 120

Query: 121 -PPNQQASQTSVKMPTQQSSGI-SSPWAVDDFLQFSDFESSGKSNSSLE 167
            PPNQ + Q ++KMP QQ+    SS WAVDD LQFSDFESS K N  LE
Sbjct: 121 PPPNQNSQQITMKMPPQQAPNFTSSSWAVDDLLQFSDFESSDK-NKQLE 168

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587107|ref|XP_002534139.1| Salt-tolerance protein, putative [Ricinus communis] gi|223525797|gb|EEF28243.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 143/167 (85%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCE+APATVICCADEAALCAKCD+EVHAANKLASKHQRLLL CLSNKLPPCDIC
Sbjct: 1   MKIQCDVCERAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLNCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA+ SSC+KD +++  E
Sbjct: 61  QEKAAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVAVGSSCTKDTKKSCLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLE 167
           PPNQ   QTS K+  QQ S  +S WAVD+ LQ SDFESS      +E
Sbjct: 121 PPNQSEQQTSTKLSVQQPSSFNSQWAVDELLQLSDFESSPDKKEQVE 167

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136260|gb|ADN34088.1| salt-tolerance protein [Cucumis melo subsp. melo]

 Score =  271 bits (692), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 132/167 (79%), Positives = 142/167 (85%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS KLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+KAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA+SSSC+KD ++   E
Sbjct: 61  QDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKDVDKVKME 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLE 167
           PPN +  Q   K+P+QQ    +S WAVDDFL FSD ESS K    LE
Sbjct: 121 PPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLE 167

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454578|ref|XP_004145031.1| PREDICTED: salt tolerance protein-like [Cucumis sativus] gi|449471891|ref|XP_004153437.1| PREDICTED: salt tolerance protein-like [Cucumis sativus] gi|449520978|ref|XP_004167509.1| PREDICTED: salt tolerance protein-like [Cucumis sativus]

 Score =  269 bits (688), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 131/167 (78%), Positives = 142/167 (85%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS KLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+KAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA+SSSC+K+ ++   E
Sbjct: 61  QDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKME 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLE 167
           PPN +  Q   K+P+QQ    +S WAVDDFL FSD ESS K    LE
Sbjct: 121 PPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLE 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168480805|gb|ACA24496.1| putative transcription factor [Cucumis sativus]

 Score =  268 bits (684), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 130/167 (77%), Positives = 141/167 (84%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS KLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+KAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATG RVA+SSSC+K+ ++   E
Sbjct: 61  QDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGTRVAMSSSCTKEVDKVKME 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNSSLE 167
           PPN +  Q   K+P+QQ    +S WAVDDFL FSD ESS K    LE
Sbjct: 121 PPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDKQKEQLE 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249332|ref|NP_001240034.1| uncharacterized protein LOC100797515 [Glycine max] gi|255640046|gb|ACU20314.1| unknown [Glycine max]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/164 (78%), Positives = 141/164 (85%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCE+APATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS+KLP CDIC
Sbjct: 1   MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPTCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+K AFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA SS+C+KD E++ SE
Sbjct: 61  QDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHSE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNS 164
           PPN+ A Q S K+P QQ    +S WAVDD L+ + FES  K  S
Sbjct: 121 PPNRSAQQVSAKIPPQQVPSFTSSWAVDDLLELTGFESPEKKES 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398757|gb|ADL36673.1| COL domain class transcription factor [Malus x domestica]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 131/164 (79%), Positives = 141/164 (85%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQ LSNKLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+K AFIFCVEDRALFC+DCDEPIHS  SLSANHQRFLATGIRV L+SS +K+AE +  E
Sbjct: 61  QDKIAFIFCVEDRALFCQDCDEPIHSANSLSANHQRFLATGIRVPLASSSTKEAETSSLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKSNS 164
           P NQ A + S K+   Q+SGISSPW VDD LQ SDFESS K +S
Sbjct: 121 PSNQGAQKISTKVSAPQASGISSPWGVDDLLQLSDFESSDKKDS 164

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.888	0.638	0.724	1.4e-57
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.906	0.625	0.709	1.2e-56
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.842	0.435	0.473	3.3e-31
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.783	0.827	0.462	1.8e-30
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.695	0.491	0.508	5e-28
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.590	0.587	0.480	6.3e-21
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.836	0.402	0.335	1.6e-18
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.608	0.353	0.380	6.7e-17
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.485	0.242	0.423	7.7e-16
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.485	0.320	0.413	2.6e-15

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 113/156 (72%), Positives = 126/156 (80%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
             MKIQCDVCEKAPAT+ICCADEAALCAKCDVEVHAANKLASKHQRL L  LS K PPCDIC
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query:    61 QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNIS 119
              EKAAFIFCVEDRAL C+DCDE  H+P + SANHQRFLATGIRVALSS SC+++ E+N  
Sbjct:    61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query:   120 EPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSD 155
             +P NQQ+     K PTQQ +  S  WA D+F  +SD
Sbjct:   121 DPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSD 153

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
 Identities = 115/162 (70%), Positives = 127/162 (78%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
             MKIQCDVCEKAPATVICCADEAALC +CD+E+HAANKLASKHQRL L  LS K P CDIC
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query:    61 QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNIS 119
             QEKAAFIFCVEDRAL C+DCDE IH   S SANHQRFLATGI+VAL+S+ CSK+ E+N  
Sbjct:    61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query:   120 EPPN--QQASQTSVKMPTQQ----SSGISSPWAVDDFLQFSD 155
             EP N  Q+A+Q   K  +QQ    SS    PWAVDDF  FSD
Sbjct:   121 EPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSD 162

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 71/150 (47%), Positives = 93/150 (62%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-C 57
             MKI+CDVC+K  A+V C ADEA+LC  CD +VH ANKLASKH R  LL    SN   P C
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    58 DICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 117
             DICQ+K A +FC +DRA+ CKDCD  IH+    +  H RFL TG++++ +SS  K   ++
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query:   118 ISEPP-NQQASQ--TSVKMPTQQSSGISSP 144
              S    NQ  S   +S+  P      +S+P
Sbjct:   121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAP 150

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 67/145 (46%), Positives = 93/145 (64%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQ------CLSNKL 54
             MKIQC+VCEKA A V+CC+DEA LC  CD++VH ANKL  +H R+ LQ        ++  
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDA 114
             P CDICQE+  + FC+EDRA+ C DCDE IH+  S    HQRFL +G++V+   S ++++
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNS----HQRFLLSGVQVS-DQSLTENS 115

Query:   115 ERNISEPPNQQASQTSVKMPTQQSS 139
             E + S        Q+ V + +Q SS
Sbjct:   116 ECSTSFSSETYQIQSKVSLNSQYSS 140

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/120 (50%), Positives = 75/120 (62%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNK-LPPCDI 59
             MKI C VC+K  A+V CCADEAALC  CD  VH ANKLA KH R  L   + K  P CDI
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    60 CQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNIS 119
             C E+ A +FC EDRA+ C++CD PIH     +  H RFL TG++++ S S    A  + S
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNS 120

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 50/104 (48%), Positives = 61/104 (58%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
             M+I CD CE A A V C ADEAALC  CD +VH  NKLAS+H R+ L   SN  P CDIC
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA-PSCDIC 59

Query:    61 QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRV 104
             +   AF +C  D +  C  CD  +H  G  +  H+RFL    R+
Sbjct:    60 ENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLLLRQRI 101

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 56/167 (33%), Positives = 84/167 (50%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI-RVALSSSCSKDA-ERNISEPP 122
             A  FC  D A  C  CD  IHS   L+  HQR     I   + SS+ +  + E  +++P 
Sbjct:    63 AAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPE 122

Query:   123 NQ-----------QASQTSVKMPTQ-QSSGISSPWAV-DDFLQFSDF 156
             N+           +A   S  +P   ++SG ++ +++ D+FL   D+
Sbjct:   123 NRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDY 169

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/113 (38%), Positives = 59/113 (52%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C++  
Sbjct:     8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 117
             A + C  D A  C  CD  IHS   LS  H+R   T    A+  + S  +  N
Sbjct:    59 AHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVN 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 201 (75.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 39/92 (42%), Positives = 52/92 (56%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C  AP+ V C AD A LCA CD  VHAAN++AS+H+R+ +         C+ C++  
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV---------CEACEQAP 85

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
             A + C  D A  C  CD  +HS   L+  HQR
Sbjct:    86 AALACRADAAALCVACDVQVHSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/92 (41%), Positives = 51/92 (55%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C  AP+ V C AD A LCA CD  VHAAN++AS+H+R+ +         C+ C+   
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV---------CEACERAP 85

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
             A + C  D A  C  CD  ++S   L+  HQR
Sbjct:    86 AALACRADAAALCVACDVQVYSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SID1	STH_ARATH	No assigned EC number	0.6904	0.9590	0.6890	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-07
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	2e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	8e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	1e-05
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	0.002

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 53 KLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFL 98
          + P CD   ++ A  FC E  AL C+ CDE  H        H   L
Sbjct: 2  RAPKCDSHGDEPAEFFCEECGALLCRTCDEAEHR------GHTVVL 41

Length = 42

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 5  CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL 47
          CD     PA   C    A LC  CD   H        H  +LL
Sbjct: 6  CDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 40.7 bits (96), Expect = 8e-06
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFL 98
            CD   E+   +FC  DRAL C DCD  +HS       H+R  
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVP 38

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 3  IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL 47
            CD   + P ++ C  D A LC  CD+ VH      S H+R+ L
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 52 NKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHS 86
          +K   C   +EK   ++C + + L C++C    H 
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHK 35

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.76
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.56
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.3
smart00336	42	BBOX B-Box-type zinc finger.	97.2
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.16
smart00336	42	BBOX B-Box-type zinc finger.	96.82
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.35

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.76  E-value=1.9e-05  Score=47.96  Aligned_cols=38  Identities=42%  Similarity=0.863  Sum_probs=33.7

Q ss_pred             cccccCCCCcEEEcccccccchhhhchhhhcCcccccCccccee
Q 030820            4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL   47 (171)
Q Consensus         4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (171)
                      .|+.++++++.+||..|.+.+|..|+...|      +.|.|+||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H------~~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhc------CCCCEeeC
Confidence            689999889999999999999999998877      38888875

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.56  E-value=5.7e-05  Score=45.79  Aligned_cols=38  Identities=42%  Similarity=0.831  Sum_probs=33.4

Q ss_pred             CCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceee
Q 030820           56 PCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLA   99 (171)
Q Consensus        56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l   99 (171)
                      .|+.|+.+++.+||..|...+|..|+...|      +.|.+++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H------~~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhc------CCCCEeeC
Confidence            499999989999999999999999998777      47888764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.30  E-value=0.00019  Score=44.67  Aligned_cols=40  Identities=23%  Similarity=0.571  Sum_probs=34.0

Q ss_pred             CccccccCCCCcEEEcccccccchhhhchhhhcCcccccCccccee
Q 030820            2 KIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL   47 (171)
Q Consensus         2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (171)
                      ...|+.+++.++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3579999998899999999999999999998853      887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.20  E-value=0.00028  Score=43.30  Aligned_cols=39  Identities=36%  Similarity=0.642  Sum_probs=33.5

Q ss_pred             ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCccccee
Q 030820            3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL   47 (171)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (171)
                      ..|..++..++.+||..|.+.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5689998889999999999999999997766      67877664

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.16  E-value=0.00017  Score=44.88  Aligned_cols=40  Identities=23%  Similarity=0.494  Sum_probs=33.5

Q ss_pred             CCCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceee
Q 030820           54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLA   99 (171)
Q Consensus        54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l   99 (171)
                      ...|+.|++..+.+||..+...+|..|....|.      +|..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~------~H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHK------GHKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTT------TSEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCC------CCEEeEC
Confidence            346999999999999999999999999988883      4877664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.82  E-value=0.0011  Score=40.59  Aligned_cols=39  Identities=41%  Similarity=0.782  Sum_probs=32.9

Q ss_pred             CCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceee
Q 030820           55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLA   99 (171)
Q Consensus        55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l   99 (171)
                      ..|+.|+..++.+||..|...+|..|....|      ++|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            3599999889999999999999999997766      56777654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.35  E-value=0.00097  Score=61.94  Aligned_cols=82  Identities=27%  Similarity=0.560  Sum_probs=68.9

Q ss_pred             ccccccCCCC--cEEEcccccccchhhhchhhhcCcccccCcccceecc-------cCCCCCCCchhcccceEEEecCCc
Q 030820            3 IQCDVCEKAP--ATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC-------LSNKLPPCDICQEKAAFIFCVEDR   73 (171)
Q Consensus         3 ~~Cd~C~~~~--A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~-------~~~~~p~Cd~C~~~~A~v~C~~D~   73 (171)
                      ..|..|++++  |+|+|..++.+.|.-|..+.|-+-..+.||.-+|-.+       .+.+...|--|+.+.-.+||..+.
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            3699999975  9999999999999999999999888888998766543       234577799999999999999999


Q ss_pred             cccccccCCCc
Q 030820           74 ALFCKDCDEPI   84 (171)
Q Consensus        74 a~LC~~CD~~v   84 (171)
                      ...|..|-...
T Consensus       243 ~pvc~~clee~  253 (699)
T KOG4367|consen  243 MPVCYQCLEEG  253 (699)
T ss_pred             ChHHHHHHHhh
Confidence            99999998553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	4e-04

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 2  KIQCDVCE---KAPATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPC 57
          K+ C  C+      A   C   E + C +C    H   K  + H+ +  +     +   C
Sbjct: 3  KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 62

Query: 58 DICQEKAAFIFCVEDRALFCKDC 80
             +++   ++CV D  L C  C
Sbjct: 63 LEHEDEKVNMYCVTDDQLICALC 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.16
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	95.17
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	94.41
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	93.76
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.51
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.34
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	93.34
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	92.98
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	92.28
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	92.14
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	90.26
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	88.03
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	87.94
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	84.11
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	84.06
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	82.61

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.16  E-value=1.8e-11  Score=88.07  Aligned_cols=93  Identities=23%  Similarity=0.446  Sum_probs=77.5

Q ss_pred             CccccccCC---CCcEEEcccccccchhhhchhhhcCcccccCcccc-eecccCCCCCCCchhcccceEEEecCCccccc
Q 030820            2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPCDICQEKAAFIFCVEDRALFC   77 (171)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv-pL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC   77 (171)
                      +..|++|.+   .+|+.+|..+.+.||..|...+|..++.+++|.++ |+...+.+...|+.|+..+..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            467999984   68999999999999999999999988888899987 55544445678999998889999999999999


Q ss_pred             cccCC-CccCCCCCCCCCcceeee
Q 030820           78 KDCDE-PIHSPGSLSANHQRFLAT  100 (171)
Q Consensus        78 ~~CD~-~vH~an~ls~~HqR~~l~  100 (171)
                      ..|.. ..|      +.|..++|.
T Consensus        83 ~~C~~~~~H------~~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRH------RDHQVAALS  100 (101)
T ss_dssp             HHHHHHTTT------SSSCBCCCC
T ss_pred             hhcCCCCCc------CCCCeecCC
Confidence            99986 667      456665553

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=95.17  E-value=0.0081  Score=41.24  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=41.3

Q ss_pred             ccCcccceeccc-CCCCCCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeeec
Q 030820           39 ASKHQRLLLQCL-SNKLPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG  101 (171)
Q Consensus        39 a~rH~RvpL~~~-~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~~  101 (171)
                      +++|+.+..... ......|+.|+..+..+||..|...+|..|.. ..|      ..|..++|..
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e   60 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLND   60 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCS
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHH
Confidence            356776665432 23355799998788899999999999999986 556      4566666654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=94.41  E-value=0.022  Score=39.29  Aligned_cols=44  Identities=25%  Similarity=0.591  Sum_probs=36.8

Q ss_pred             CccccccCC---CCcEEEcccccccchhhhchhhhcCcccccCcccc
Q 030820            2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL   45 (171)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv   45 (171)
                      .+.||+|..   .+|+..|..+.+.||..|=...|...+.+++|.=+
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L~   76 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   76 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCCS
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCccc
Confidence            368999976   67999999999999999987779877777888643

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=93.76  E-value=0.021  Score=35.40  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=32.3

Q ss_pred             CCCCchhcccceEEEecCCccccccccC-CCccCCCCCCCCCcceeee
Q 030820           54 LPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT  100 (171)
Q Consensus        54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD-~~vH~an~ls~~HqR~~l~  100 (171)
                      ...|+.|+.++..+||..|...+|..|. ...|      +.|..++|+
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence            4569999977889999999999999996 4456      457666653

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.51  E-value=0.041  Score=34.65  Aligned_cols=40  Identities=28%  Similarity=0.514  Sum_probs=32.3

Q ss_pred             CCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeeec
Q 030820           55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG  101 (171)
Q Consensus        55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~~  101 (171)
                      ..|+.|+ ++..+||..|...+|..|.. ..|      +.|..++|..
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e   49 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG   49 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence            3599998 67899999999999999986 566      5677776653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.34  E-value=0.019  Score=40.40  Aligned_cols=43  Identities=21%  Similarity=0.526  Sum_probs=35.9

Q ss_pred             CCCchhcc---cceEEEecCCccccccccCCCccCCCCCCCCCcce
Q 030820           55 PPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRF   97 (171)
Q Consensus        55 p~Cd~C~~---~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~   97 (171)
                      ..|++|.+   .+|..+|..+...||..|...+|..+....+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            35999984   57999999999999999998888777666788765

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=93.34  E-value=0.022  Score=35.42  Aligned_cols=40  Identities=25%  Similarity=0.592  Sum_probs=32.6

Q ss_pred             CCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceeee
Q 030820           55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLAT  100 (171)
Q Consensus        55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l~  100 (171)
                      ..|+.|+..+..+||..|...+|..|....|      +.|..++|.
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~   46 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE   46 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence            3599998888999999999999999987656      467766664

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=92.98  E-value=0.045  Score=32.79  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=24.5

Q ss_pred             CCchhcccceEEEecCCccccccccCC-Ccc
Q 030820           56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIH   85 (171)
Q Consensus        56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH   85 (171)
                      .|+.|+ ++..+||..|...+|..|.. .-|
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H   34 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH   34 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence            599997 56889999999999999986 455

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.28  E-value=0.071  Score=34.62  Aligned_cols=40  Identities=28%  Similarity=0.648  Sum_probs=32.1

Q ss_pred             CCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeeec
Q 030820           55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG  101 (171)
Q Consensus        55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~~  101 (171)
                      ..|+.|+ ++..+||..|...+|..|.. .-|      +.|..++|..
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~e   55 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSG   55 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCS
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHH
Confidence            4599997 46889999999999999986 556      5677777764

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.14  E-value=0.039  Score=35.84  Aligned_cols=41  Identities=20%  Similarity=0.381  Sum_probs=32.0

Q ss_pred             CCCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeee
Q 030820           54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLAT  100 (171)
Q Consensus        54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~  100 (171)
                      ...|+.|+..+..+||..|...+|..|.. ..|      +.|..++|.
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   49 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   49 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHH
Confidence            34699998888899999999999999974 466      356665554

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=90.26  E-value=0.11  Score=34.73  Aligned_cols=55  Identities=24%  Similarity=0.304  Sum_probs=38.1

Q ss_pred             ccCcccceecccCCCCCCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceeeec
Q 030820           39 ASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG  101 (171)
Q Consensus        39 a~rH~RvpL~~~~~~~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l~~  101 (171)
                      +++|+-+.-. .......|+.|+ .+..+||..|...+|..|....|      +.|..++|..
T Consensus         4 ~~~H~L~~p~-~~~~~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e   58 (72)
T 2csv_A            4 GSSGQLLEPI-RDFEARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE   58 (72)
T ss_dssp             SCCCCCCCCS-SSSSCCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred             ccCCcccCCc-cccccCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence            3556644321 112345799995 77899999999999999976556      4677777653

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.03  E-value=0.072  Score=34.42  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=25.8

Q ss_pred             CCCCchhcccceEEEecCCccccccccCC-Ccc
Q 030820           54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIH   85 (171)
Q Consensus        54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH   85 (171)
                      ...|+.|+ ++..+||..|...+|..|.. ..|
T Consensus        18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH   49 (57)
T 2egm_A           18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSH   49 (57)
T ss_dssp             TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred             cCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence            44699996 66899999999999999985 455

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=87.94  E-value=0.34  Score=30.25  Aligned_cols=41  Identities=22%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceeccc
Q 030820            3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL   50 (171)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~   50 (171)
                      ..|..-+ .+-.+||..|...+|..|-. .-|      +.|..+||.++
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea   50 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP   50 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence            4566665 56789999999999999985 455      56777887654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.11  E-value=0.73  Score=29.68  Aligned_cols=41  Identities=17%  Similarity=0.355  Sum_probs=30.5

Q ss_pred             ccccccCCCCcEEEcccccccchhhhch-hhhcCcccccCcccceeccc
Q 030820            3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL   50 (171)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~   50 (171)
                      ..|..-+ .+-.+||..|...+|..|.. .-|      +.|..+||.++
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea   56 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP   56 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence            3465555 46789999999999999986 455      46777777554

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=84.06  E-value=0.71  Score=28.32  Aligned_cols=42  Identities=24%  Similarity=0.613  Sum_probs=30.9

Q ss_pred             ccccccCCCCcEEEcccccccchhhhchhhhcCcccccCcccceeccc
Q 030820            3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCL   50 (171)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~~   50 (171)
                      ..|..-...+-.+||..|...+|..|-..-|      +.|..++|.++
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ea   48 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLEDA   48 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC-
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHHH
Confidence            3566664456789999999999999976555      46777777543

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=82.61  E-value=0.25  Score=33.92  Aligned_cols=43  Identities=21%  Similarity=0.502  Sum_probs=34.7

Q ss_pred             CCCCchhcc---cceEEEecCCccccccccCCCccCCCCCCCCCcc
Q 030820           54 LPPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR   96 (171)
Q Consensus        54 ~p~Cd~C~~---~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR   96 (171)
                      ...|++|..   .+|...|..+.+.||..|-...|...+..++|+-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            456999976   5689999999999999998777876666667764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.38
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	93.59
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	93.15
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	92.77
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	92.45
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	89.06
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	84.88

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0034  Score=40.67  Aligned_cols=41  Identities=24%  Similarity=0.402  Sum_probs=32.7

Q ss_pred             CCCCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceeee
Q 030820           54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLAT  100 (171)
Q Consensus        54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l~  100 (171)
                      ...|+.|...+..+||..|...+|..|.. ..|      .+|.-.+|.
T Consensus        11 ~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~   52 (71)
T d2djaa1          11 GITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN   52 (71)
T ss_dssp             CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred             CCcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHH
Confidence            44699999999999999999999999964 456      457665554

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.59  E-value=0.016  Score=33.94  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=27.9

Q ss_pred             CCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceee
Q 030820           56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLA   99 (171)
Q Consensus        56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l   99 (171)
                      +|+.|+ ++..+||..|...+|..|.. ..|      ++|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            588996 56889999999999999964 345      45655543

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.011  Score=36.33  Aligned_cols=31  Identities=26%  Similarity=0.589  Sum_probs=25.9

Q ss_pred             CCCchhcccceEEEecCCccccccccC-CCcc
Q 030820           55 PPCDICQEKAAFIFCVEDRALFCKDCD-EPIH   85 (171)
Q Consensus        55 p~Cd~C~~~~A~v~C~~D~a~LC~~CD-~~vH   85 (171)
                      |.|+.|...+..+||..|...+|..|. ...|
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H   33 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH   33 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc
Confidence            459999999999999999999999995 3455

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.021  Score=33.48  Aligned_cols=37  Identities=27%  Similarity=0.479  Sum_probs=28.8

Q ss_pred             CCchhcccceEEEecCCccccccccCC-CccCCCCCCCCCcceee
Q 030820           56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLA   99 (171)
Q Consensus        56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD~-~vH~an~ls~~HqR~~l   99 (171)
                      .|+.|+ ++-.+||..|...+|..|.. ..|      +.|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            489995 56899999999999999974 356      45665553

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.024  Score=34.19  Aligned_cols=38  Identities=26%  Similarity=0.507  Sum_probs=30.3

Q ss_pred             CCchhcccceEEEecCCccccccccC-CCccCCCCCCCCCcceee
Q 030820           56 PCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLA   99 (171)
Q Consensus        56 ~Cd~C~~~~A~v~C~~D~a~LC~~CD-~~vH~an~ls~~HqR~~l   99 (171)
                      .|+.|...+..+||..+...+|..|- ...|      ++|.-.+|
T Consensus         7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l   45 (47)
T d2dq5a1           7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAAL   45 (47)
T ss_dssp             BCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCS
T ss_pred             cchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeC
Confidence            49999999999999999999999995 3466      34655444

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.06  E-value=0.044  Score=34.32  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=32.0

Q ss_pred             CCCCchhcccceEEEecCCccccccccCCCccCCCCCCCCCcceeee
Q 030820           54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLAT  100 (171)
Q Consensus        54 ~p~Cd~C~~~~A~v~C~~D~a~LC~~CD~~vH~an~ls~~HqR~~l~  100 (171)
                      ...|..|+ .+..+||..|...+|..|....|      .+|.-+++.
T Consensus        11 ~~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~   50 (59)
T d2csva1          11 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVE   50 (59)
T ss_dssp             CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHH
T ss_pred             hCchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHH
Confidence            34699996 57899999999999999976666      457766664

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.88  E-value=0.3  Score=30.87  Aligned_cols=42  Identities=29%  Similarity=0.514  Sum_probs=32.1

Q ss_pred             ccccccCCCCcEEEcccccccchhhhchh-hhcCcccccCcccceeccc
Q 030820            3 IQCDVCEKAPATVICCADEAALCAKCDVE-VHAANKLASKHQRLLLQCL   50 (171)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~-vH~aN~la~rH~RvpL~~~   50 (171)
                      ..|..-...+..+||..|...+|..|-.. .|      +.|.-.+|.++
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a   54 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR   54 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHH
Confidence            45777666678999999999999999643 56      45877777654