Citrus Sinensis ID: 030863

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHSPS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEccccccccccccccccccccccEEEEEEEEEcccccccccEEEEEccccccccEEEEEEEccccEEEcccccccEEEccccEEEEccccccccccccccccccccEEEEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccEEEccccccccccccccccccccccccEEEEEEEEEEccccccccEEEEEccccccccEEEEEEEccccEEEEccccEEEEcccccEEEEEcccccccccccccccccccEEEEEEEEEccHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MAAHNFLWSLTKNCFTFGLIgltvsdryasivpvrgssmsptfnpttdsfmgslsddHVLMEKFCLQkykfshgdvivfcspsnhkekHVKRIIglpgdwigtpmtndvvkvpnghcwvegdnpsssldsrsfgpiplglvkgrvthilwppqrvrhverknhqkrhsps
Flexible Loop (DISEMBL)
MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVpvrgssmsptfnPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVthilwppqrvrhverknhqkrhsps
Low Complexity Region (SEG)
MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHSPS
Disordered region (IsUnstruct)
***HNFLWSLTKNCFTFGLIGLTVSDRYASIVPVR****************GSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEG***********FGPIPLGLVKGRVTHILWPPQ*****************
Disordered Region (DISOPRED)
***HNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHV************
Disordered Region (DISEMBL)
MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRH*************
Disordered Region (DISPRO)
*AAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVER**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHSPS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q6AZD4	183	Mitochondrial inner membr	yes	no	0.894	0.830	0.392	2e-28
Q8BPT6	175	Mitochondrial inner membr	yes	no	0.858	0.834	0.421	3e-27
Q96T52	175	Mitochondrial inner membr	yes	no	0.876	0.851	0.406	7e-27
Q2KI92	177	Mitochondrial inner membr	yes	no	0.876	0.841	0.406	8e-27
Q5PQ63	170	Mitochondrial inner membr	N/A	no	0.876	0.876	0.394	1e-24
P46972	177	Mitochondrial inner membr	yes	no	0.758	0.728	0.433	6e-23
Q9UST2	180	Mitochondrial inner membr	yes	no	0.864	0.816	0.365	2e-19
Q9CQU8	166	Mitochondrial inner membr	no	no	0.788	0.807	0.358	1e-18
Q96LU5	166	Mitochondrial inner membr	no	no	0.788	0.807	0.358	3e-18
O74800	157	Mitochondrial inner membr	no	no	0.635	0.687	0.398	1e-16

>sp|Q6AZD4|IMP2L_DANRE Mitochondrial inner membrane protease subunit 2 OS=Danio rerio GN=immp2l PE=2 SV=1

 Score =  125 bits (313), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 6/158 (3%)

Query: 3   AHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLME 62
              +  +     F    + +TV DR A +  V G+SM P+ NP  +S     S D VL+ 
Sbjct: 7   GRRYFKAFVSGFFVAVPVTVTVLDRLAYVARVEGASMQPSLNPDGES-----SPDVVLLN 61

Query: 63  KFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEG 121
           ++ ++ Y    GD++   SP N ++K +KR+IG+ GD+I T    N  V+VP+GH W+EG
Sbjct: 62  RWSVRNYHVQRGDIVSVLSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEG 121

Query: 122 DNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
           D+   S DS +FGP+ LGLV GR +HI+WPP R + +E
Sbjct: 122 DHHGHSFDSNAFGPVSLGLVHGRASHIIWPPSRWQRIE 159

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q8BPT6|IMP2L_MOUSE Mitochondrial inner membrane protease subunit 2 OS=Mus musculus GN=Immp2l PE=2 SV=1

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 89/152 (58%), Gaps = 6/152 (3%)

Query: 9   SLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQK 68
           +  K  F    + +T  DR A +  V GSSM P+ NP      GS S D VL+  + ++ 
Sbjct: 14  AFCKGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPG-----GSQSSDVVLLNHWKVRN 68

Query: 69  YKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNPSSS 127
           ++   GD++   SP N ++K +KR+I L GD + T    N +VKVP GH WVEGD+   S
Sbjct: 69  FEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHS 128

Query: 128 LDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
            DS SFGP+ LGL+    THILWPP+R + +E
Sbjct: 129 FDSNSFGPVSLGLLHAHATHILWPPERWQRLE 160

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q96T52|IMP2L_HUMAN Mitochondrial inner membrane protease subunit 2 OS=Homo sapiens GN=IMMP2L PE=2 SV=1

 Score =  119 bits (299), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 6/155 (3%)

Query: 6   FLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFC 65
           ++ +  K  F    + +T  DR A +  V G+SM P+ NP      GS S D VL+  + 
Sbjct: 11  YIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNHWK 65

Query: 66  LQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNP 124
           ++ ++   GD++   SP N ++K +KR+I L GD + T    N  VKVP GH WVEGD+ 
Sbjct: 66  VRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHH 125

Query: 125 SSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
             S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct: 126 GHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLE 160

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q2KI92|IMP2L_BOVIN Mitochondrial inner membrane protease subunit 2 OS=Bos taurus GN=IMMP2L PE=2 SV=1

 Score =  119 bits (298), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 89/155 (57%), Gaps = 6/155 (3%)

Query: 6   FLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFC 65
           +  +  K  F    + +T  DR A +  V G+SM P+ NP      GS S D VL+  + 
Sbjct: 11  YFKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNHWK 65

Query: 66  LQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNP 124
           ++ ++   GD++   SP N ++K +KR+I L GD + T    N  VKVP GH WVEGD+ 
Sbjct: 66  VRNFEVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHH 125

Query: 125 SSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
             S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct: 126 GHSFDSNSFGPVSLGLLHAHATHILWPPKRWQKLE 160

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5PQ63|IMP2L_XENLA Mitochondrial inner membrane protease subunit 2 OS=Xenopus laevis GN=immp2l PE=2 SV=1

 Score =  112 bits (281), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/157 (39%), Positives = 83/157 (52%), Gaps = 8/157 (5%)

Query: 1   MAAH--NFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDH 58
           MA H   ++ +     F    + +T  DR A I  V G SM P+ NP           D 
Sbjct: 1   MAQHGRRYVRAFISGFFVAVPVTVTFLDRVACIARVEGVSMQPSLNPDARG-----ESDI 55

Query: 59  VLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHC 117
           VL+ ++  + Y    GD++   SP N ++K +KR+I L GD + T    N  VKVP GH 
Sbjct: 56  VLLNRWRARNYDVQRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTLGHKNRYVKVPRGHV 115

Query: 118 WVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR 154
           WVEGD+   S DS +FGP+ LGL+    THILWPP R
Sbjct: 116 WVEGDHHGHSFDSNAFGPVSLGLLHSHATHILWPPNR 152

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P46972|IMP2_YEAST Mitochondrial inner membrane protease subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IMP2 PE=1 SV=1

 Score =  106 bits (265), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/136 (43%), Positives = 83/136 (61%), Gaps = 7/136 (5%)

Query: 22  LTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQK-YKFSHGDVIVFC 80
           LT+++    I  V+G+SM PT NP T++    L+ D VL+ KF ++     S  D+I+F 
Sbjct: 25  LTINNNVVHIAQVKGTSMQPTLNPQTET----LATDWVLLWKFGVKNPSNLSRDDIILFK 80

Query: 81  SPSNHKEKHVKRIIGLPGDWIGT--PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
           +P+N ++ + KR+ GLP D I T  P     V +P GH WVEGDN   S+DS +FGPI  
Sbjct: 81  APTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYFHSIDSNTFGPISS 140

Query: 139 GLVKGRVTHILWPPQR 154
           GLV G+   I+WPP R
Sbjct: 141 GLVIGKAITIVWPPSR 156

Catalytic component of the mitochondrial inner membrane peptidase (IMP) complex. IMP catalyzes the removal of signal peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. The two catalytic IMP subunits seem to have non-overlapping substrate specificities. IMP2 substrates include nuclear encoded CYB2, mitochondrially encoded COX2 and cytochrome c1. Required for the stability of IMP1.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9UST2|IMP2L_SCHPO Mitochondrial inner membrane protease subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC336.13c PE=3 SV=1

 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 86/164 (52%), Gaps = 17/164 (10%)

Query: 12  KNCFTFGLIGLT--------VSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEK 63
           K+ F   L+G+T        V     S+  + G SM P FNP T+     L  D VL+ K
Sbjct: 12  KSVFFKNLVGITLWVPVLMFVEQHVVSVGTIEGRSMKPAFNPETNM----LQRDRVLLWK 67

Query: 64  FCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT--PMTNDVVKVPNGHCWVEG 121
           +  + YK   GDV++  SP N +E  VKR++G+  D + T  P    +V VP GH WVEG
Sbjct: 68  WN-KDYK--RGDVVILRSPENPEELLVKRVLGVEYDIMKTRPPKKLSLVPVPEGHVWVEG 124

Query: 122 DNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQK 165
           D    S+DS  FGP+  GL+  +V  IL+P  R   ++ +  +K
Sbjct: 125 DEQFHSIDSNKFGPVSTGLITAKVIAILFPFSRAGRIDHEGFRK 168

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9CQU8|IMP1L_MOUSE Mitochondrial inner membrane protease subunit 1 OS=Mus musculus GN=Immp1l PE=2 SV=1

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 14/148 (9%)

Query: 8   WSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQ 67
           + L      +G I     +    +V   G SM PT            + D V  E     
Sbjct: 10  FRLAGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ----------NSDIVFAENLSRH 59

Query: 68  KYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVK----VPNGHCWVEGDN 123
            Y    GD+++  SPS+ K    KR+IGL GD I +   +DV K    VP GH W+EGDN
Sbjct: 60  FYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILSTSPSDVFKSRSYVPTGHVWLEGDN 119

Query: 124 PSSSLDSRSFGPIPLGLVKGRVTHILWP 151
             +S DSR +GPIP GL++GR+   +WP
Sbjct: 120 LQNSTDSRYYGPIPYGLIRGRIFFKIWP 147

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q96LU5|IMP1L_HUMAN Mitochondrial inner membrane protease subunit 1 OS=Homo sapiens GN=IMMP1L PE=2 SV=1

 Score = 90.9 bits (224), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 71/148 (47%), Gaps = 14/148 (9%)

Query: 8   WSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQ 67
           + L      +G I     +    +V   G SM PT            + D V  E     
Sbjct: 10  FRLVGYTIQYGCIAHCAFEYVGGVVMCSGPSMEPTIQ----------NSDIVFAENLSRH 59

Query: 68  KYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVK----VPNGHCWVEGDN 123
            Y    GD+++  SPS+ K    KR+IGL GD I T   +D  K    VP GH W+EGDN
Sbjct: 60  FYGIQRGDIVIAKSPSDPKSNICKRVIGLEGDKILTTSPSDFFKSHSYVPMGHVWLEGDN 119

Query: 124 PSSSLDSRSFGPIPLGLVKGRVTHILWP 151
             +S DSR +GPIP GL++GR+   +WP
Sbjct: 120 LQNSTDSRCYGPIPYGLIRGRIFFKIWP 147

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space. Known to process the nuclear encoded protein DIABLO.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|O74800|IMP1_SCHPO Mitochondrial inner membrane protease subunit 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=imp1 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 68/118 (57%), Gaps = 10/118 (8%)

Query: 36  GSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIG 95
           G SM PT N   +  +  L   H    + C      S GDV+V   PS+ K+   KRIIG
Sbjct: 33  GPSMMPTLNSGGEFVL--LDKLHGRFARSC------SVGDVVVSAKPSDSKQHVCKRIIG 84

Query: 96  LPGD--WIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWP 151
           +PGD  ++    +N  + +P GH W+ GDN + SLDSR++GP+P+GL+K +V   +WP
Sbjct: 85  MPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGLIKAKVIARVWP 142

Catalyzes the removal of transit peptides required for the targeting of proteins from the mitochondrial matrix, across the inner membrane, into the inter-membrane space.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
255574385	170	mitochondrial inner membrane protease su	1.0	1.0	0.747	3e-69
224140407	169	predicted protein [Populus trichocarpa]	0.988	0.994	0.711	2e-66
449439902	184	PREDICTED: mitochondrial inner membrane	1.0	0.923	0.658	2e-65
225440672	170	PREDICTED: mitochondrial inner membrane	0.947	0.947	0.695	1e-64
388512387	173	unknown [Lotus japonicus]	0.935	0.919	0.679	1e-59
116794380	170	unknown [Picea sitchensis]	0.988	0.988	0.642	2e-59
357481155	165	Mitochondrial inner membrane protease su	0.947	0.975	0.6	5e-56
351727543	170	uncharacterized protein LOC100499932 [Gl	0.935	0.935	0.610	2e-55
351722229	169	uncharacterized protein LOC100527429 [Gl	0.988	0.994	0.595	2e-55
297829426	154	signal peptidase I family protein [Arabi	0.894	0.987	0.588	8e-53

>gi|255574385|ref|XP_002528106.1| mitochondrial inner membrane protease subunit, putative [Ricinus communis] gi|223532495|gb|EEF34285.1| mitochondrial inner membrane protease subunit, putative [Ricinus communis]

 Score =  266 bits (679), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 142/170 (83%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           MA+ NFLWSL K  FT GLIG+T+SDRYASIVPVRG SMSPTFNP T +F GS  DD VL
Sbjct: 1   MASSNFLWSLAKKYFTVGLIGITISDRYASIVPVRGVSMSPTFNPGTSTFWGSFIDDCVL 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCL+KY+FSHGDV+VF SPSNHKEKH+KRIIGLPGDWIGTP   DVVKVP GHCWVE
Sbjct: 61  VEKFCLEKYRFSHGDVVVFRSPSNHKEKHIKRIIGLPGDWIGTPHAYDVVKVPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHSPS 170
           GDN  SS+DSR FGP+PLGL+ GRVTHI+WPPQR+  VE+K  Q R S S
Sbjct: 121 GDNLLSSMDSRYFGPVPLGLISGRVTHIVWPPQRIGEVEKKIPQGRLSSS 170

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140407|ref|XP_002323574.1| predicted protein [Populus trichocarpa] gi|222868204|gb|EEF05335.1| predicted protein [Populus trichocarpa]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/170 (71%), Positives = 144/170 (84%), Gaps = 2/170 (1%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M + + LW+LTK   T G+IGLT++DRYAS+VPVRG SMSPTFNP T++ +GSL DD VL
Sbjct: 1   MGSGSLLWNLTKKYLTVGVIGLTITDRYASVVPVRGGSMSPTFNPRTNTVLGSL-DDRVL 59

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCL KYKFSHGDV+VF SPS+HK+K +KRIIGLPGDW+GTP  NDVVK+P GHCWVE
Sbjct: 60  IEKFCLAKYKFSHGDVVVFRSPSDHKQKLIKRIIGLPGDWMGTPQ-NDVVKIPEGHCWVE 118

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHSPS 170
           GDNP+SS+DSRSFGPIPLGLV+GR T I+WPPQR+  VER+  Q R SPS
Sbjct: 119 GDNPASSMDSRSFGPIPLGLVQGRATTIVWPPQRICQVERRILQDRFSPS 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439902|ref|XP_004137724.1| PREDICTED: mitochondrial inner membrane protease subunit 2-like [Cucumis sativus] gi|449483475|ref|XP_004156603.1| PREDICTED: mitochondrial inner membrane protease subunit 2-like [Cucumis sativus]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 112/170 (65%), Positives = 139/170 (81%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           MA  N +W++ K  FTFG+IG+T+SDRYAS+VP+RG+SMSPTFNP   S  G ++ D+VL
Sbjct: 1   MANRNLVWNVVKKSFTFGIIGVTISDRYASVVPIRGASMSPTFNPIATSLTGPMTGDYVL 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCL+KYKFS GDVIV+ SP N+KEK VKRII LPGDW+GT  T DVVKVP GHCWVE
Sbjct: 61  VEKFCLEKYKFSPGDVIVYRSPCNYKEKQVKRIIALPGDWVGTRQTYDVVKVPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHSPS 170
           GDNP  S+DSRSFGPIP+GL++GRV+HI+WPPQR+  VE+K  Q   +P+
Sbjct: 121 GDNPECSMDSRSFGPIPMGLIQGRVSHIVWPPQRIGAVEKKYPQGESNPT 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440672|ref|XP_002279805.1| PREDICTED: mitochondrial inner membrane protease subunit 2 [Vitis vinifera] gi|297740215|emb|CBI30397.3| unnamed protein product [Vitis vinifera]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/161 (69%), Positives = 131/161 (81%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M   NFLW   K CFTFGLIGLT+SDRYASI  V+G SM PTFNP   +FMGSL+DD+VL
Sbjct: 1   MGTRNFLWDFGKKCFTFGLIGLTISDRYASIAHVQGLSMYPTFNPNARTFMGSLTDDYVL 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCL+KYKFSHGDVI F SP+NH+EK +KRII LPGDWI  P + D +++P GHCWVE
Sbjct: 61  LEKFCLEKYKFSHGDVIAFRSPNNHREKQIKRIIALPGDWITAPHSYDALRIPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERK 161
           GDN +SSLDSRSFGP+PLGL  GR THI+WPPQR+  VER+
Sbjct: 121 GDNSASSLDSRSFGPVPLGLACGRATHIVWPPQRIGEVERR 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388512387|gb|AFK44255.1| unknown [Lotus japonicus]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 108/159 (67%), Positives = 127/159 (79%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M    FLW+ TK   TFGLI +TVSDRY ++VPVRG SMSPTFNP T S MG +SDD V 
Sbjct: 1   MGPSGFLWNFTKKFVTFGLISVTVSDRYMTVVPVRGGSMSPTFNPKTHSLMGGVSDDCVF 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCLQKYKFSHGDV+VF SP NHKE H+KRII LPG+WIG     DV+K+P GHCWVE
Sbjct: 61  VEKFCLQKYKFSHGDVMVFRSPLNHKETHIKRIIALPGEWIGAHHNYDVLKIPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
           GDN +SSL S+SFGPIPL L++GRVTH++WPPQR+  V+
Sbjct: 121 GDNAASSLGSKSFGPIPLALIRGRVTHVVWPPQRIGAVK 159

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116794380|gb|ABK27122.1| unknown [Picea sitchensis]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 130/168 (77%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M A +FLW L+K   +  LIGLT+SDRYASIV V+G SM PT NP + +  GSL  D VL
Sbjct: 1   MGAWDFLWMLSKKSLSGALIGLTISDRYASIVAVQGRSMQPTLNPGSKNRFGSLKGDFVL 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCLQ YKFSHGDVIVF SP  H E HVKR+I LPGDWI  P T D++K+P GHCWVE
Sbjct: 61  LEKFCLQNYKFSHGDVIVFRSPYEHNEWHVKRLIALPGDWISVPGTYDILKIPEGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHS 168
           GDN  SSLDSRSFGP+PLGLV+GRVTH++WPP+RV  +E++  ++R S
Sbjct: 121 GDNAVSSLDSRSFGPVPLGLVQGRVTHVIWPPERVGAIEKQYPKERVS 168

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357481155|ref|XP_003610863.1| Mitochondrial inner membrane protease subunit [Medicago truncatula] gi|355512198|gb|AES93821.1| Mitochondrial inner membrane protease subunit [Medicago truncatula]

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 99/165 (60%), Positives = 127/165 (76%), Gaps = 4/165 (2%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M   N +W++TK   T GLI  TVSDRYA++VPVRG+SMSPTFNP T+SF    +DD+V 
Sbjct: 1   MGTRNLVWNVTKKLATIGLITFTVSDRYATVVPVRGASMSPTFNPKTNSF----TDDYVF 56

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EK CL K+KFSHGD+++F SPSN KE H+KRII LPG+W       DV+KVP GHCWVE
Sbjct: 57  VEKLCLDKFKFSHGDIVIFSSPSNFKETHIKRIIALPGEWFVNRHNQDVLKVPEGHCWVE 116

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQK 165
           GDN +SS DS+S+GP+PLGLV+GRVTH++WPPQR+  V+    ++
Sbjct: 117 GDNAASSTDSKSYGPVPLGLVRGRVTHVVWPPQRIGAVKNTTPER 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727543|ref|NP_001238188.1| uncharacterized protein LOC100499932 [Glycine max] gi|255627785|gb|ACU14237.1| unknown [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 97/159 (61%), Positives = 124/159 (77%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M   +FLW+ TK   + G++ +TV+D + +++PVRG SMSPTFNP   S MG + DD+VL
Sbjct: 1   MGTSSFLWNCTKKFISAGIVTVTVTDLFVTVIPVRGGSMSPTFNPKAGSLMGGVFDDYVL 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCL  YKFSHGDV+VF SP N KE HVKRI  LPG+W GT   NDV+++P GHCWVE
Sbjct: 61  VEKFCLHSYKFSHGDVVVFRSPQNRKETHVKRIAALPGEWFGTHQKNDVIQIPLGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
           GDN +SSLDS SFGPIPLG+++GRVTH++WPPQR+  V+
Sbjct: 121 GDNTASSLDSNSFGPIPLGIIRGRVTHVVWPPQRIGAVK 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722229|ref|NP_001235957.1| uncharacterized protein LOC100527429 [Glycine max] gi|255632322|gb|ACU16519.1| unknown [Glycine max]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 127/168 (75%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M   +FLW+ TK   T G++ +TV+D + +++PVRG SMSPTFNP   S MG + DD+VL
Sbjct: 1   MGTSSFLWNCTKKFITAGIVTVTVTDHFVTVIPVRGGSMSPTFNPKAGSHMGDVFDDYVL 60

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           +EKFCL+ YKFSHGDV+VF SP NHKE HVKRI  LPG+W G    NDV+++P GHCWVE
Sbjct: 61  VEKFCLRNYKFSHGDVVVFRSPLNHKETHVKRIAALPGEWFGAHHNNDVIQIPLGHCWVE 120

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVERKNHQKRHS 168
           GDN +SSLDS SFGPIPL L++GRVTH++WPPQR+  V+    Q+  S
Sbjct: 121 GDNTASSLDSNSFGPIPLALIRGRVTHVVWPPQRIGAVKSTPPQRLSS 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829426|ref|XP_002882595.1| signal peptidase I family protein [Arabidopsis lyrata subsp. lyrata] gi|297328435|gb|EFH58854.1| signal peptidase I family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 125/158 (79%), Gaps = 6/158 (3%)

Query: 1   MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
           M   N LW + K  FT  +IGLT+SDR  S+VPVRG SMSPTFNP  +S++    DD+VL
Sbjct: 1   MGIQNILWQVAKKSFTGSIIGLTISDRCCSVVPVRGDSMSPTFNPQRNSYL----DDYVL 56

Query: 61  MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
           ++KFCL+ YKF+ GDV+VF SP+N  ++++KRI+G+PG+WI +  + DV++VP GHCWVE
Sbjct: 57  VDKFCLKDYKFARGDVVVFSSPTNFGDRYIKRIVGMPGEWISS--SRDVIRVPEGHCWVE 114

Query: 121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHV 158
           GDN +SSLDSR+FGPIPLGL++GRVT +LWPPQR+  +
Sbjct: 115 GDNKTSSLDSRTFGPIPLGLIQGRVTRVLWPPQRISKI 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2095249	154	AT3G08980 [Arabidopsis thalian	0.905	1.0	0.581	5.6e-52
ZFIN|ZDB-GENE-040808-9	184	immp2l "IMP2 inner mitochondri	0.794	0.733	0.432	9.1e-29
MGI|MGI:2135611	175	Immp2l "IMP2 inner mitochondri	0.841	0.817	0.429	1e-27
UNIPROTKB|Q96T52	175	IMMP2L "Mitochondrial inner me	0.876	0.851	0.406	3.5e-27
UNIPROTKB|Q2KI92	177	IMMP2L "Mitochondrial inner me	0.841	0.807	0.422	5.7e-27
UNIPROTKB|E1BVJ0	175	IMMP2L "Uncharacterized protei	0.847	0.822	0.413	2.5e-26
FB|FBgn0034535	171	CG11110 [Drosophila melanogast	0.829	0.824	0.371	1.6e-24
CGD|CAL0002703	162	IMP2 [Candida albicans (taxid:	0.735	0.771	0.428	5.3e-24
SGD|S000004638	177	IMP2 "Catalytic subunit of mit	0.758	0.728	0.433	5.3e-24
ZFIN|ZDB-GENE-070522-4	189	immp1l "IMP1 inner mitochondri	0.747	0.671	0.404	8e-21

TAIR|locus:2095249 AT3G08980 [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 93/160 (58%), Positives = 126/160 (78%)

Query:     1 MAAHNFLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVL 60
             M   N LW + K  FT  +IGLT+SDR  S+VPVRG SMSPTFNP  +S++    DD+VL
Sbjct:     1 MGIQNILWQVAKKSFTGSIIGLTISDRCCSVVPVRGDSMSPTFNPQRNSYL----DDYVL 56

Query:    61 MEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVE 120
             ++KFCL+ YKF+ GDV+VF SP++  ++++KRI+G+PG+WI +  + DV++VP GHCWVE
Sbjct:    57 VDKFCLKDYKFARGDVVVFSSPTHFGDRYIKRIVGMPGEWISS--SRDVIRVPEGHCWVE 114

Query:   121 GDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVER 160
             GDN +SSLDSRSFGPIPLGL++GRVT ++WPPQR+  + R
Sbjct:   115 GDNKTSSLDSRSFGPIPLGLIQGRVTRVMWPPQRISKIGR 154

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008233 "peptidase activity" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

ZFIN|ZDB-GENE-040808-9 immp2l "IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 61/141 (43%), Positives = 90/141 (63%)

Query:    20 IGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVF 79
             + +TV DR A +  V G+SM P+ NP  +S     S D VL+ ++ ++ Y    GD++  
Sbjct:    25 VTVTVLDRLAYVARVEGASMQPSLNPDGES-----SPDVVLLNRWSVRNYHVQRGDIVSV 79

Query:    80 CSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
              SP N ++K +KR+IG+ GD+I T    N  V+VP+GH W+EGD+   S DS +FGP+ L
Sbjct:    80 LSPKNPQQKIIKRVIGIEGDFIKTLGYKNRYVRVPDGHLWIEGDHHGHSFDSNAFGPVSL 139

Query:   139 GLVKGRVTHILWPPQRVRHVE 159
             GLV GR +HI+WPP R + +E
Sbjct:   140 GLVHGRASHIIWPPSRWQRIE 160

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

MGI|MGI:2135611 Immp2l "IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 64/149 (42%), Positives = 88/149 (59%)

Query:    12 KNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKF 71
             K  F    + +T  DR A +  V GSSM P+ NP      GS S D VL+  + ++ ++ 
Sbjct:    17 KGFFVAVPVAVTFLDRVACVARVEGSSMQPSLNPG-----GSQSSDVVLLNHWKVRNFEV 71

Query:    72 SHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNPSSSLDS 130
               GD++   SP N ++K +KR+I L GD + T    N +VKVP GH WVEGD+   S DS
Sbjct:    72 QRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRLVKVPRGHMWVEGDHHGHSFDS 131

Query:   131 RSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
              SFGP+ LGL+    THILWPP+R + +E
Sbjct:   132 NSFGPVSLGLLHAHATHILWPPERWQRLE 160

GO:0001541 "ovarian follicle development" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISA

GO:0006508 "proteolysis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IGI

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008104 "protein localization" evidence=ISA

GO:0008152 "metabolic process" evidence=ISA;IMP

GO:0008233 "peptidase activity" evidence=IGI;ISA;IMP

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030728 "ovulation" evidence=IMP

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IGI

UNIPROTKB|Q96T52 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 63/155 (40%), Positives = 90/155 (58%)

Query:     6 FLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFC 65
             ++ +  K  F    + +T  DR A +  V G+SM P+ NP      GS S D VL+  + 
Sbjct:    11 YIKAFCKGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNHWK 65

Query:    66 LQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNP 124
             ++ ++   GD++   SP N ++K +KR+I L GD + T    N  VKVP GH WVEGD+ 
Sbjct:    66 VRNFEVHRGDIVSLVSPKNPEQKIIKRVIALEGDIVRTIGHKNRYVKVPRGHIWVEGDHH 125

Query:   125 SSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
               S DS SFGP+ LGL+    THILWPP+R + +E
Sbjct:   126 GHSFDSNSFGPVSLGLLHAHATHILWPPERWQKLE 160

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0008233 "peptidase activity" evidence=ISS

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=ISS

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|Q2KI92 IMMP2L "Mitochondrial inner membrane protease subunit 2" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 63/149 (42%), Positives = 87/149 (58%)

Query:    12 KNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKF 71
             K  F    + +T  DR A +  V G+SM P+ NP      GS S D VL+  + ++ ++ 
Sbjct:    17 KGFFVAVPVAVTFLDRVACVARVEGASMQPSLNPG-----GSQSSDVVLLNHWKVRNFEV 71

Query:    72 SHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP-MTNDVVKVPNGHCWVEGDNPSSSLDS 130
               GD++   SP N ++K +KR+I L GD + T    N  VKVP GH WVEGD+   S DS
Sbjct:    72 QRGDIVSLVSPKNPEQKIIKRVIALEGDIVKTMGHKNRYVKVPRGHIWVEGDHHGHSFDS 131

Query:   131 RSFGPIPLGLVKGRVTHILWPPQRVRHVE 159
              SFGP+ LGL+    THILWPP+R + +E
Sbjct:   132 NSFGPVSLGLLHAHATHILWPPKRWQKLE 160

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|E1BVJ0 IMMP2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 62/150 (41%), Positives = 86/150 (57%)

Query:     6 FLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFC 65
             +L +  K  F    + +T  DR A +  V G+SM P+ NP      G  + D VL+  + 
Sbjct:    11 YLKAFFKGFFVAVPVTVTFLDRVACVARVEGASMQPSLNPG-----GRQASDVVLLNHWS 65

Query:    66 LQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNP 124
             ++ Y    GD++   SP N ++K +KR+I L GD I T       VKVP+GH WVEGD+ 
Sbjct:    66 IRNYDVQRGDIVSLVSPRNPEQKIIKRVIALEGDIIKTIGYKKKYVKVPHGHIWVEGDHH 125

Query:   125 SSSLDSRSFGPIPLGLVKGRVTHILWPPQR 154
               S DS +FGP+ LGL+  R THILWPP+R
Sbjct:   126 GHSFDSNAFGPVSLGLLHARATHILWPPKR 155

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0001541 "ovarian follicle development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030728 "ovulation" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

FB|FBgn0034535 CG11110 [Drosophila melanogaster (taxid:7227)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 55/148 (37%), Positives = 85/148 (57%)

Query:    20 IGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVF 79
             +G+T  D    +  V G SM P  NP  D        D+V + ++     +   GD+I  
Sbjct:    16 LGVTFLDCVGYVARVDGISMQPALNPVPDE------KDYVFLLRWGTHNSQVERGDIISL 69

Query:    80 CSPSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
              SP +  +K +KR++GL GD + T    +++V+VP GHCWVEGD+   S+DS +FGP+ L
Sbjct:    70 ISPKDPAQKIIKRVVGLQGDVVSTLGYKHEIVRVPEGHCWVEGDHTGHSMDSNTFGPVAL 129

Query:   139 GLVKGRVTHILWPPQRVRHVERKNHQKR 166
             GL+  R   I+WPP+R R +E +  ++R
Sbjct:   130 GLMSARAVAIVWPPERWRILENELPRRR 157

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

CGD|CAL0002703 IMP2 [Candida albicans (taxid:5476)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 57/133 (42%), Positives = 81/133 (60%)

Query:    34 VRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKY-KFSHGDVIVFCSPSNHKEKHVKR 92
             + GSSM+PTFNP T +    ++ D VL++K+ ++K    S GD+I+F SP N ++   KR
Sbjct:    33 ITGSSMTPTFNPGTST----MTKDIVLVQKYNIKKPGSLSRGDIIMFRSPENPEKLLTKR 88

Query:    93 IIGLPGDWI---GTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL 149
             ++G+ GD I     P     VK+P  H WVEGDN   S+DS  FGP+  GLV G+V  I+
Sbjct:    89 VVGIQGDIIRPKSPPYPKSEVKIPRNHFWVEGDNSFHSIDSNKFGPVSQGLVIGKVVTII 148

Query:   150 WPPQRVRHVERKN 162
             WPP R     ++N
Sbjct:   149 WPPSRFGSELKRN 161

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0004175 "endopeptidase activity" evidence=IEA

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

SGD|S000004638 IMP2 "Catalytic subunit of mitochondrial inner membrane peptidase complex" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 59/136 (43%), Positives = 83/136 (61%)

Query:    22 LTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQK-YKFSHGDVIVFC 80
             LT+++    I  V+G+SM PT NP T++    L+ D VL+ KF ++     S  D+I+F 
Sbjct:    25 LTINNNVVHIAQVKGTSMQPTLNPQTET----LATDWVLLWKFGVKNPSNLSRDDIILFK 80

Query:    81 SPSNHKEKHVKRIIGLPGDWIGT--PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPL 138
             +P+N ++ + KR+ GLP D I T  P     V +P GH WVEGDN   S+DS +FGPI  
Sbjct:    81 APTNPRKVYCKRVKGLPFDTIDTKFPYPKPQVNLPRGHIWVEGDNYFHSIDSNTFGPISS 140

Query:   139 GLVKGRVTHILWPPQR 154
             GLV G+   I+WPP R
Sbjct:   141 GLVIGKAITIVWPPSR 156

GO:0004175 "endopeptidase activity" evidence=IMP;IDA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA;IPI

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-070522-4 immp1l "IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 57/141 (40%), Positives = 73/141 (51%)

Query:    17 FGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDV 76
             +G I     +     V   G SM PT            + D V  E+     Y+   GD+
Sbjct:    44 YGCIAHCAFEYVGEFVSCSGPSMEPTIT----------NHDVVFSERISRHLYRIQKGDI 93

Query:    77 IVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVK----VPNGHCWVEGDNPSSSLDSRS 132
             I+  SPSN K    KR+IGL GD + T   +D+ K    VP GH W+EGDN  +S DSRS
Sbjct:    94 IIAKSPSNPKMNICKRVIGLEGDKVCTSGPSDIFKTHTYVPRGHVWLEGDNLRNSTDSRS 153

Query:   133 FGPIPLGLVKGRVTHILWPPQ 153
             +GPIP  L++GRV   LWPPQ
Sbjct:   154 YGPIPYALIRGRVCLKLWPPQ 174

GO:0006627 "protein processing involved in protein targeting to mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0042720 "mitochondrial inner membrane peptidase complex" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BPT6	IMP2L_MOUSE	3, ., 4, ., 2, 1, ., -	0.4210	0.8588	0.8342	yes	no
Q6AZD4	IMP2L_DANRE	3, ., 4, ., 2, 1, ., -	0.3924	0.8941	0.8306	yes	no
Q2KI92	IMP2L_BOVIN	3, ., 4, ., 2, 1, ., -	0.4064	0.8764	0.8418	yes	no
Q9UST2	IMP2L_SCHPO	3, ., 4, ., 2, 1, ., -	0.3658	0.8647	0.8166	yes	no
Q96T52	IMP2L_HUMAN	3, ., 4, ., 2, 1, ., -	0.4064	0.8764	0.8514	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.89	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
TIGR02227	163	TIGR02227, sigpep_I_bact, signal peptidase I, bact	6e-26
cd06530	85	cd06530, S26_SPase_I, The S26 Type I signal peptid	3e-22
cd06462	84	cd06462, Peptidase_S24_S26, The S24, S26 LexA/sign	6e-15
TIGR02754	90	TIGR02754, sod_Ni_protease, nickel-type superoxide	2e-07
pfam00717	69	pfam00717, Peptidase_S24, Peptidase S24-like	8e-07
pfam10502	138	pfam10502, Peptidase_S26, Signal peptidase, peptid	4e-05
COG0681	166	COG0681, LepB, Signal peptidase I [Intracellular t	8e-05
PRK10861	324	PRK10861, PRK10861, signal peptidase I; Provisiona	0.001

>gnl|CDD|233790 TIGR02227, sigpep_I_bact, signal peptidase I, bacterial type

 Score = 96.5 bits (241), Expect = 6e-26
 Identities = 51/166 (30%), Positives = 70/166 (42%), Gaps = 43/166 (25%)

Query: 15  FTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHG 74
               LI   V   Y   VP  G SM PT              D +L+ KF         G
Sbjct: 10  LLALLIRTFVFFPY--KVP--GGSMEPTLKE----------GDRILVNKFAYGTSDPKRG 55

Query: 75  DVIVFCSPSNHKEKHVKRIIGLPGDWI---------------------------GTPMTN 107
           D++VF  P ++K  ++KR+IGLPGD +                               T 
Sbjct: 56  DIVVFKDPDDNKNIYIKRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGFLDTSEFNTT 115

Query: 108 DV--VKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWP 151
           D   V VP GH +V GDN  +SLDSR FG +P+  + G+V+ + +P
Sbjct: 116 DYGPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDIIGKVSFVFYP 161

This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes [Protein fate, Protein and peptide secretion and trafficking]. Length = 163

>gnl|CDD|119398 cd06530, S26_SPase_I, The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

 Score = 84.6 bits (210), Expect = 3e-22
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 31/116 (26%)

Query: 30  SIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKH 89
             V V G SM PT  P           D VL+ K      +   GDV+VF SP +  +  
Sbjct: 1   EPVVVPGGSMEPTLQP----------GDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPI 50

Query: 90  VKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRV 145
           +KR+IG                      +V GDN ++SLDSR +GP+P   + G+V
Sbjct: 51  IKRVIG---------------------YFVLGDNRNNSLDSRYWGPVPEDDIVGKV 85

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa) belong to this family and they process many proteins that enter the ER for retention or for export to the Golgi apparatus, secretory vesicles, plasma membranes or vacuole. An atypical member of the S26 SPase type I family is the TraF peptidase which has the remarkable activity of producing a cyclic protein of the Pseudomonas pilin system. The type I signal peptidases are unique serine proteases that utilize a serine/lysine catalytic dyad mechanism in place of the classical serine/histidine/aspartic acid catalytic triad mechanism. Length = 85

>gnl|CDD|119396 cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

 Score = 65.7 bits (161), Expect = 6e-15
 Identities = 40/116 (34%), Positives = 52/116 (44%), Gaps = 32/116 (27%)

Query: 30  SIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKH 89
             + V G SM PT              D VL++K     Y+   GD++VF  P    E  
Sbjct: 1   FALRVEGDSMEPTIPD----------GDLVLVDK---SSYEPKRGDIVVFRLPGG--ELT 45

Query: 90  VKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRV 145
           VKR+IGLPG+               GH ++ GDNP +S DSR  GP P   + G V
Sbjct: 46  VKRVIGLPGE---------------GHYFLLGDNP-NSPDSRIDGP-PELDIVGVV 84

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the transport of proteins across membranes in all living organisms. All members in this superfamily are unique serine proteases that carry out catalysis using a serine/lysine dyad instead of the prototypical serine/histidine/aspartic acid triad found in most serine proteases. Length = 84

>gnl|CDD|233997 TIGR02754, sod_Ni_protease, nickel-type superoxide dismutase maturation protease

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 26/113 (23%)

Query: 34  VRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRI 93
           V G SMSPT  P           D +++  +         G+V+V   P       +KR+
Sbjct: 3   VTGVSMSPTLPP----------GDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRL 52

Query: 94  IGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVT 146
                             V +   ++ GDNP +S DSR  GP+P  L+ G+V 
Sbjct: 53  AA----------------VDDNGLFLLGDNPKASTDSRQLGPVPRSLLLGKVL 89

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad [Cellular processes, Detoxification, Protein fate, Protein modification and repair]. Length = 90

>gnl|CDD|216079 pfam00717, Peptidase_S24, Peptidase S24-like

 Score = 44.1 bits (105), Expect = 8e-07
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 16/68 (23%)

Query: 34  VRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRI 93
           V+G SM PT              D +L++K      +   GD++V     + +E  VKR+
Sbjct: 2   VKGDSMEPTIPD----------GDLLLVDKTS----EPKRGDIVVA--RLDGEEATVKRL 45

Query: 94  IGLPGDWI 101
           IGLPGD I
Sbjct: 46  IGLPGDII 53

Length = 69

>gnl|CDD|151062 pfam10502, Peptidase_S26, Signal peptidase, peptidase S26

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 37/115 (32%)

Query: 72  SHGDVIVFCSPS------------NHKEKHVKRIIGLPGD--------------WIGTPM 105
             GD++  C P                   +KR++ LPG                +   +
Sbjct: 23  EVGDLVAVCPPEPAAFFAAERGYLPRGVPLLKRVLALPGQRVCIRDGLVTIDGVPVSAAL 82

Query: 106 TNDVV-----------KVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL 149
             D              +P G  ++       S DSR FGP+P   + GR   + 
Sbjct: 83  ERDRKGRPLPPWQGCRVLPEGELFLMSVTSPDSFDSRYFGPVPASAIIGRARPVW 137

This is a family of membrane signal serine endopeptidases which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal, signal peptides as proteins are translocated across membranes. The active site residues take the form of a catalytic dyad that is Ser, Lys in subfamily S26A; the Ser is the nucleophile in catalysis, and the Lys is the general base. Length = 138

>gnl|CDD|223753 COG0681, LepB, Signal peptidase I [Intracellular trafficking and secretion]

 Score = 40.8 bits (95), Expect = 8e-05
 Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 20/119 (16%)

Query: 19  LIGLTVSDR--YASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDV 76
           ++ L +  R      V V   SM PT N            D VL++KF     K    D+
Sbjct: 19  ILALIIGVRTFVFEPVVVPSGSMEPTLNVG----------DRVLVKKFSYGFGKLKVPDI 68

Query: 77  IVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND----VVKVPNGHCWVEGDNPSSSLDSR 131
           IV   P+  +   +KR+IGL GD +     +D    V  +P  +  VE DN    +D  
Sbjct: 69  IVL--PAVVEGDLIKRVIGLRGDIV--VFKDDRLYVVPIIPRVYGLVEKDNGKHLVDVI 123

Length = 166

>gnl|CDD|182787 PRK10861, PRK10861, signal peptidase I; Provisional

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 22/76 (28%)

Query: 38  SMSPTFNPTTDSFMGSLSDDHVLMEKFCL-------QK--YKFSH---GDVIVFCSPSNH 85
           SM PT           L  D +L+EKF         Q    +  H   GD++VF  P + 
Sbjct: 91  SMMPTL----------LIGDFILVEKFAYGIKDPITQTTLIETGHPKRGDIVVFKYPEDP 140

Query: 86  KEKHVKRIIGLPGDWI 101
           K  ++KR++GLPGD +
Sbjct: 141 KLDYIKRVVGLPGDKV 156

Length = 324

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
TIGR02227	163	sigpep_I_bact signal peptidase I, bacterial type.	100.0
KOG0171	176	consensus Mitochondrial inner membrane protease, s	100.0
KOG1568	174	consensus Mitochondrial inner membrane protease, s	100.0
PRK10861	324	signal peptidase I; Provisional	100.0
PRK13838	176	conjugal transfer pilin processing protease TraF;	99.93
PRK13884	178	conjugal transfer peptidase TraF; Provisional	99.9
TIGR02771	171	TraF_Ti conjugative transfer signal peptidase TraF	99.89
TIGR02754	90	sod_Ni_protease nickel-type superoxide dismutase m	99.89
PF10502	138	Peptidase_S26: Signal peptidase, peptidase S26 ; I	99.88
cd06530	85	S26_SPase_I The S26 Type I signal peptidase (SPase	99.85
TIGR02228	158	sigpep_I_arch signal peptidase I, archaeal type. T	99.8
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	99.65
COG4959	173	TraF Type IV secretory pathway, protease TraF [Pos	99.58
cd06462	84	Peptidase_S24_S26 The S24, S26 LexA/signal peptida	99.26
PF00717	70	Peptidase_S24: Peptidase S24-like peptidase classi	99.24
KOG3342	180	consensus Signal peptidase I [Intracellular traffi	99.05
cd06529	81	S24_LexA-like Peptidase S24 LexA-like proteins are	98.92
COG2932	214	Predicted transcriptional regulator [Transcription	98.89
PRK10276	139	DNA polymerase V subunit UmuD; Provisional	98.59
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	98.5
PRK00215	205	LexA repressor; Validated	98.47
PRK12423	202	LexA repressor; Provisional	98.43
COG1974	201	LexA SOS-response transcriptional repressors (RecA	97.84
TIGR02594	129	conserved hypothetical protein TIGR02594. Members	86.6
COG0681	166	LepB Signal peptidase I [Intracellular trafficking	80.68

>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type

Probab=100.00  E-value=1.9e-39  Score=249.66  Aligned_cols=133  Identities=35%  Similarity=0.557  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceE
Q 030863           11 TKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHV   90 (170)
Q Consensus        11 ~~~~~~~~~~~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~v   90 (170)
                      +..++++++++++++.|+++.+.|+|+||+|||+.          ||+++++|..+...++++||+|+|+.|.++++.++
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~v~g~SM~Ptl~~----------Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~i   71 (163)
T TIGR02227         2 ILSLLIAILLALLIRTFVFFPYKIPGGSMEPTLKE----------GDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYV   71 (163)
T ss_pred             HHHHHHHHHHHHHHHhhEEEEEEECCcccccchhC----------CCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeE
Confidence            55677777888999999999999999999999999          99999999887667999999999999987788999


Q ss_pred             EEEEEeCCCeEeccC-----------------------------CCCeEEccCCeEEEecCCCCCCCCCCccccccCCCE
Q 030863           91 KRIIGLPGDWIGTPM-----------------------------TNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLV  141 (170)
Q Consensus        91 KRVvg~~GD~v~~~~-----------------------------~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I  141 (170)
                      |||+|+|||+|++..                             ...+.+||+|||||+|||+++|.|||+||+|++++|
T Consensus        72 KRVig~pGd~v~i~~~~l~vNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~~fvlGDnr~~S~DSR~~G~V~~~~I  151 (163)
T TIGR02227        72 KRVIGLPGDKVEFRDGKLYINGKKIDEPYLKPNGSLDTSGFNTTDFKPVTVPPGHYFVLGDNRDNSLDSRYFGFVPIDDI  151 (163)
T ss_pred             EEEEecCCCEEEEECCEEEECCEECcccccccccccccccccccccCceEECCCCEEEECCCCCCCcccCCcCcCCHHHe
Confidence            999999999998711                             012468999999999999999999999999999999


Q ss_pred             eEEEEEEEeCCC
Q 030863          142 KGRVTHILWPPQ  153 (170)
Q Consensus       142 ~Gkv~~~~~P~~  153 (170)
                      +|||.+++||++
T Consensus       152 ~Gk~~~~~~p~~  163 (163)
T TIGR02227       152 IGKVSFVFYPFD  163 (163)
T ss_pred             EEEEEEEECCCC
Confidence            999999999985

A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.

>KOG0171 consensus Mitochondrial inner membrane protease, subunit IMP1 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-38  Score=239.47  Aligned_cols=141  Identities=35%  Similarity=0.622  Sum_probs=126.5

Q ss_pred             HHHHHHHHHHHHHHHHhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCce
Q 030863           10 LTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKH   89 (170)
Q Consensus        10 ~~~~~~~~~~~~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~   89 (170)
                      +.......+++++++..|++++..++|.||+||+.++         ||+++.+|+++.++.+++||||++.+|.++++.+
T Consensus        14 ~~~~~~~~~~f~h~t~~yl~e~~~~~gpSM~PTl~~~---------gd~l~aEkls~~f~~~~~gDIVi~~sP~~~~~~~   84 (176)
T KOG0171|consen   14 SFCSEIAYAAFTHVTHEYLGEFVMCSGPSMEPTLHDG---------GDVLLAEKLSYRFRKPQVGDIVIAKSPPDPKEHI   84 (176)
T ss_pred             hhHHHHHHHHHHHHHHHHhcceeeccCCCcCceecCC---------CcEEehhhhhHhhcCCCCCCEEEEeCCCCchhhh
Confidence            3455566677788888899999999999999999996         8999999999999999999999999999999999


Q ss_pred             EEEEEEeCCCeEeccC-----------CCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcccc
Q 030863           90 VKRIIGLPGDWIGTPM-----------TNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHV  158 (170)
Q Consensus        90 vKRVvg~~GD~v~~~~-----------~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g~~  158 (170)
                      +|||+|+|||.|++..           ...+..||+||+||+|||+++|.|||+|||+|..+|+||+++++||.++.+..
T Consensus        85 cKRIva~eGD~v~v~~~~~~~n~~~e~~~~~i~VP~GhVfv~GDN~~nS~DSr~yGplP~glI~gRvv~r~Wp~s~~~~~  164 (176)
T KOG0171|consen   85 CKRIVAMEGDLVEVHDGPLVVNDLVEKFSTPIRVPEGHVFVEGDNRNNSLDSRNYGPLPMGLIQGRVVFRIWPPSRVSGL  164 (176)
T ss_pred             hheeeccCCceEEEecCCcccchhhhhccceeeccCceEEEecCCCCCcccccccCCCchhheeeeEEEEecCchhccee
Confidence            9999999999777621           12357999999999999999999999999999999999999999999988776


Q ss_pred             c
Q 030863          159 E  159 (170)
Q Consensus       159 ~  159 (170)
                      .
T Consensus       165 ~  165 (176)
T KOG0171|consen  165 I  165 (176)
T ss_pred             e
Confidence            5

>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8e-38  Score=236.24  Aligned_cols=161  Identities=39%  Similarity=0.668  Sum_probs=140.6

Q ss_pred             hHHHHHHHHHHHHHHH--HHHHHHhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEec
Q 030863            4 HNFLWSLTKNCFTFGL--IGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCS   81 (170)
Q Consensus         4 ~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~   81 (170)
                      +.-++.+.+.++.++.  +.+.+...+.....|.|.||.||+++.    .++.+.|+||++|+......+.+||+|+|.+
T Consensus         4 ~~~~~~~~ksl~~s~~~~v~~t~~DrV~~va~v~G~smqPtlnP~----~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~s   79 (174)
T KOG1568|consen    4 RYIFKVFEKSLTGSLKWHVLLTFSDRVVHVAQVYGSSMQPTLNPT----MNTNEKDTVLLRKWNVKNRKVSRGDIVVLKS   79 (174)
T ss_pred             HHHHHHHHhceeeeeeeheeeeeeeeEEEEeEEecCcCCCccCCC----cccccccEEEEEeeccccceeccCCEEEEeC
Confidence            3344555555555555  456677788999999999999999993    3444569999999987656789999999999


Q ss_pred             CCCCCCceEEEEEEeCCCeEec-cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcccccc
Q 030863           82 PSNHKEKHVKRIIGLPGDWIGT-PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVRHVER  160 (170)
Q Consensus        82 p~~~~~~~vKRVvg~~GD~v~~-~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g~~~~  160 (170)
                      |.++++.+||||+|+|||++.. ++....+.||+|||||+|||...|+|||.||||+..+|.|||++++||+.|++.+++
T Consensus        80 P~~p~~~~iKRv~alegd~~~t~~~k~~~v~vpkghcWVegDn~~hs~DSntFGPVS~gli~grai~ilwpP~R~~~~~~  159 (174)
T KOG1568|consen   80 PNDPDKVIIKRVAALEGDIMVTEDEKEEPVVVPKGHCWVEGDNQKHSYDSNTFGPVSTGLIVGRAIYILWPPVRWQRLDK  159 (174)
T ss_pred             CCChhheeeeeeecccccEeccCCCCCCceecCCCcEEEecCCcccccccCccCCcchhheeeeEEEEEcChHHhhhhcc
Confidence            9999999999999999999876 677889999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 030863          161 KNHQKRHS  168 (170)
Q Consensus       161 ~~~~~~~~  168 (170)
                      ..|..|++
T Consensus       160 ~~~~~~~~  167 (174)
T KOG1568|consen  160 ESPGRRVP  167 (174)
T ss_pred             cCCccccc
Confidence            99998875

>PRK10861 signal peptidase I; Provisional

Probab=100.00  E-value=5.2e-35  Score=245.51  Aligned_cols=139  Identities=29%  Similarity=0.398  Sum_probs=124.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccc------------cCCCcc
Q 030863            6 FLWSLTKNCFTFGLIGLTVSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQ------------KYKFSH   73 (170)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~------------~~~~~r   73 (170)
                      .+..++..++.+++++++++.|+++++.|+|+||+|||..          ||+++++|+.|.            ..+++|
T Consensus        59 ~~~~~~~~~~~~l~i~~~ir~fv~~~~~Ips~SM~PTL~~----------GD~IlVnK~~yg~~~p~~~~~~~~~~~p~R  128 (324)
T PRK10861         59 GWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPITQTTLIETGHPKR  128 (324)
T ss_pred             hHHHHHHHHHHHHhHHHHHHhhEEEEEEECCCcCcCcccC----------CCEEEEEEeecCccCccccccccccCCCCC
Confidence            3667788888888999999999999999999999999999          999999998874            257899


Q ss_pred             ceEEEEecCCCCCCceEEEEEEeCCCeEecc---------C---------------------------------------
Q 030863           74 GDVIVFCSPSNHKEKHVKRIIGLPGDWIGTP---------M---------------------------------------  105 (170)
Q Consensus        74 GDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~---------~---------------------------------------  105 (170)
                      ||||+|+.|.+++..+||||+|+|||+|++.         .                                       
T Consensus       129 GDIVVF~~P~~~~~~yIKRVIGlPGD~I~~~~~~~~l~iNg~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  208 (324)
T PRK10861        129 GDIVVFKYPEDPKLDYIKRVVGLPGDKVTYDPVSKEVTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSG  208 (324)
T ss_pred             CCEEEEecCCCCCCcEEEEeeecCCcEEEEEeCCCEEEEcCccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999888899999999999999862         0                                       


Q ss_pred             ----------------C---------------------------------CCeEEccCCeEEEecCCCCCCCCCCccccc
Q 030863          106 ----------------T---------------------------------NDVVKVPNGHCWVEGDNPSSSLDSRSFGPI  136 (170)
Q Consensus       106 ----------------~---------------------------------~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V  136 (170)
                                      .                                 ...++||+|+||++|||+++|.||||||+|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~E~l~~~~h~i~~~~~~~~~~~~~~~~~~~~~~~~~vp~g~yf~mgdnr~~S~DSRy~G~V  288 (324)
T PRK10861        209 FFQVPLNETKENGIRLSERKETLGDVTHRILTVPGAQDQVGMYYQQPGQPLATWVVPPGQYFMMGDNRDNSADSRYWGFV  288 (324)
T ss_pred             cccccccccccccccceeEEEecCCccceeeecCCcccccccccccCCCcCceEEECCCeEEEeCCCCCCCcccCccccc
Confidence                            0                                 012389999999999999999999999999


Q ss_pred             cCCCEeEEEEEEEeCCCC
Q 030863          137 PLGLVKGRVTHILWPPQR  154 (170)
Q Consensus       137 ~~~~I~Gkv~~~~~P~~~  154 (170)
                      |.++|+|||..++|+++.
T Consensus       289 p~~~i~G~a~~i~~s~d~  306 (324)
T PRK10861        289 PEANLVGKATAIWMSFEK  306 (324)
T ss_pred             CHHHcEEEEEEEEEEcCC
Confidence            999999999999999873

>PRK13838 conjugal transfer pilin processing protease TraF; Provisional

Probab=99.93  E-value=9.6e-25  Score=169.89  Aligned_cols=93  Identities=23%  Similarity=0.369  Sum_probs=75.5

Q ss_pred             CcEEEEEccccccCCCccceEEEEecCCCC-------------------CCceEEEEEEeCCCeEeccC-----------
Q 030863           56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNH-------------------KEKHVKRIIGLPGDWIGTPM-----------  105 (170)
Q Consensus        56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~-------------------~~~~vKRVvg~~GD~v~~~~-----------  105 (170)
                      .+.+.++++.+...++++||+|+|+.|.++                   ...++|||+|+|||+|++..           
T Consensus        36 S~pig~y~~~~~~~~~~rGDiVvf~~P~~~~~~~a~~r~yl~~g~~p~~~~~~iKRViglpGD~V~i~~~v~iNg~~~~~  115 (176)
T PRK13838         36 SEPLGLWRIEALDRPVAVGDLVFICPPETAAFREARERGYLRRGLCPGGFAPLIKTVAALAGQRVEIGGSVSIDGRPLPS  115 (176)
T ss_pred             CCEEEEEEEeccCCCCCCCcEEEEECCchhhhhhhhhcccccccccccCCCceEEEEEEeCCcEEEECCEEEECCEEccc
Confidence            456777776654568999999999988643                   13599999999999998820           


Q ss_pred             ------C--------CCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030863          106 ------T--------NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL  149 (170)
Q Consensus       106 ------~--------~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~  149 (170)
                            .        ....+||+|+|||+||| .+|+||||||+|++++|+|+|..++
T Consensus       116 ~~~~~~~~~g~~l~~~~~~~vp~g~~fvlgd~-~~S~DSRy~G~V~~~~I~G~a~pi~  172 (176)
T PRK13838        116 SSVRRRDGEGRPLTPFPGGVVPPGHLFLHSSF-AGSYDSRYFGPVPASGLLGLARPVL  172 (176)
T ss_pred             cccccccccCCcCCCCCccCcCCCeEEEECCC-CCCCcccccCcccHHHeEEEEEEEE
Confidence                  0        11357999999999998 5899999999999999999998765

>PRK13884 conjugal transfer peptidase TraF; Provisional

Probab=99.90  E-value=8.8e-23  Score=159.17  Aligned_cols=81  Identities=21%  Similarity=0.409  Sum_probs=67.9

Q ss_pred             CCCccceEEEEecCCCC-------------------CCceEEEEEEeCCCeEeccC------------------------
Q 030863           69 YKFSHGDVIVFCSPSNH-------------------KEKHVKRIIGLPGDWIGTPM------------------------  105 (170)
Q Consensus        69 ~~~~rGDiV~f~~p~~~-------------------~~~~vKRVvg~~GD~v~~~~------------------------  105 (170)
                      ..+++||+|+|+.|...                   ...++|||+|+|||+|++..                        
T Consensus        49 ~~~~~Gd~V~f~~p~~~~~~~a~~rgyl~~g~~p~~~~~liKRVva~pGD~V~~~~~~l~VNG~~v~~~~~~~~d~~g~~  128 (178)
T PRK13884         49 APVEKGAYVLFCPPQRGVFDDAKERGYIGAGFCPGGYGYMMKRVLAAKGDAVSVTDDGVRVNGELLPLSKPILADGAGRP  128 (178)
T ss_pred             CCCCCCCEEEEeCCchHHHHHHHhCCccccCcCCCCCCceEEEEEeeCCcEEEEECCEEEECCEEccccccccccccCCc
Confidence            37999999999987631                   13789999999999999810                        


Q ss_pred             ----CCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030863          106 ----TNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL  149 (170)
Q Consensus       106 ----~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~  149 (170)
                          ....++||+|+||++|||+++|+||||||+|++++|+|++..++
T Consensus       129 l~~~~~~~~~lp~g~~fvlgd~~~~S~DSRYfG~V~~~~I~G~~~Pl~  176 (178)
T PRK13884        129 LPRYQANSYTLGESELLLMSDVSATSFDGRYFGPINRSQIKTVIRPVI  176 (178)
T ss_pred             ccccCCCceEECCCEEEEECCCCCCCCcccccCcccHHHEEEEEEEeE
Confidence                01135899999999999999999999999999999999998764

>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF

Probab=99.89  E-value=7.9e-23  Score=158.51  Aligned_cols=80  Identities=38%  Similarity=0.657  Sum_probs=68.0

Q ss_pred             CCCccceEEEEecCCCCC-------------------CceEEEEEEeCCCeEeccC------------------------
Q 030863           69 YKFSHGDVIVFCSPSNHK-------------------EKHVKRIIGLPGDWIGTPM------------------------  105 (170)
Q Consensus        69 ~~~~rGDiV~f~~p~~~~-------------------~~~vKRVvg~~GD~v~~~~------------------------  105 (170)
                      .+++|||+|+|+.|.++.                   ..++|||+|+|||+|++..                        
T Consensus        45 ~~~~rGDiVvf~~p~~~~~~~~~~rg~l~~g~~p~~~~~~vKRViglpGD~V~i~~~~v~INg~~~~~~~~~~~~~~g~~  124 (171)
T TIGR02771        45 KPVERGDYVVFCPPDNPQFEEARERGYLREGLCPGGFGPLLKRVLGLPGDRVTVRADVVAINGQLLPYSKPLATDSSGRP  124 (171)
T ss_pred             CCCCCCcEEEEeCCCchhhhchhhcCcccccccCcCccceEEEEEEeCCCEEEEECCEEEECCEEcccccccccccCCCc
Confidence            379999999999886432                   2799999999999999811                        


Q ss_pred             --CCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030863          106 --TNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL  149 (170)
Q Consensus       106 --~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~  149 (170)
                        ...+.+||+| ||++|||+++|+||||||+|++++|+||+..++
T Consensus       125 l~~~~~~~vp~g-yf~lgdn~~~S~DSRy~G~V~~~~IiGk~~pl~  169 (171)
T TIGR02771       125 LPPFPEGVIPPG-FFVVHDTSPTSFDSRYFGPISREQVIGRVKPLF  169 (171)
T ss_pred             cccCCCcEECCC-EEEECCCCCCCCcccccceecHHHeEEEEEEeE
Confidence              0125789999 999999999999999999999999999998654

This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.

>TIGR02754 sod_Ni_protease nickel-type superoxide dismutase maturation protease

Probab=99.89  E-value=9.8e-23  Score=141.85  Aligned_cols=89  Identities=33%  Similarity=0.514  Sum_probs=78.7

Q ss_pred             EEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEc
Q 030863           33 PVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKV  112 (170)
Q Consensus        33 ~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~v  112 (170)
                      .|+|+||+|||.+          ||+|++++.......+++||+|+|+.|.++++.++||++++++              
T Consensus         2 ~V~g~SM~P~l~~----------GD~vlv~~~~~~~~~~~~Gdivv~~~~~~~~~~~vkRv~~~~~--------------   57 (90)
T TIGR02754         2 KVTGVSMSPTLPP----------GDRIIVVPWLKIFRVPPIGNVVVVRHPLQPYGLIIKRLAAVDD--------------   57 (90)
T ss_pred             EeeCCCccCccCC----------CCEEEEEEccccCCCCCCCeEEEEecCCCCcceEEEEeeEEcC--------------
Confidence            6899999999999          9999999865433456789999999987667899999999875              


Q ss_pred             cCCeEEEecCCCCCCCCCCccccccCCCEeEEEEE
Q 030863          113 PNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTH  147 (170)
Q Consensus       113 p~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~  147 (170)
                        +++|++|||+..|.|||++|+|+..+|+|||++
T Consensus        58 --~~~~l~~dN~~~~~d~~~~g~v~~~~I~G~v~~   90 (90)
T TIGR02754        58 --NGLFLLGDNPKASTDSRQLGPVPRSLLLGKVLW   90 (90)
T ss_pred             --CeEEEeCCCCCCCCcccccCCCcHHHEEEEEEC
Confidence              589999999999999999999999999999863

Members of this protein family are apparent proteases encoded adjacent to the genes for a nickel-type superoxide dismutase. This family belongs to the same larger family (see Pfam model pfam00717) as signal peptidase I, an unusual serine protease suggested to have a Ser/Lys catalytic dyad.

>PF10502 Peptidase_S26: Signal peptidase, peptidase S26 ; InterPro: IPR019533 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.88  E-value=1.1e-23  Score=158.07  Aligned_cols=89  Identities=33%  Similarity=0.636  Sum_probs=32.9

Q ss_pred             cEEEEEccccccCCCccceEEEEecCCC------------CCCceEEEEEEeCCCeEecc--------------------
Q 030863           57 DHVLMEKFCLQKYKFSHGDVIVFCSPSN------------HKEKHVKRIIGLPGDWIGTP--------------------  104 (170)
Q Consensus        57 d~vlv~k~~~~~~~~~rGDiV~f~~p~~------------~~~~~vKRVvg~~GD~v~~~--------------------  104 (170)
                      -+.++.+..    .+++||+|+|+.|..            .+..++|||+|+|||+|++.                    
T Consensus        12 g~Y~~~~~~----~~~rGd~V~f~~p~~~~~~~~~~gy~~~~~~~iKrV~a~pGD~V~v~~~~v~iNG~~~~~~~~~d~~   87 (138)
T PF10502_consen   12 GIYLIDPSD----KIERGDLVVFCPPAEVAFFAAERGYLPEGQPLIKRVAAVPGDTVEVTDGGVYINGRPVGEPLATDSD   87 (138)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            455555544    589999999999862            24589999999999999981                    


Q ss_pred             -----CCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030863          105 -----MTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL  149 (170)
Q Consensus       105 -----~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~  149 (170)
                           ....+.+||+|+||++|||+.+|+||||||+|++++|+|||..++
T Consensus        88 g~~l~~~~~~~~vp~g~~~v~gd~~~~S~DSRy~G~V~~~~I~g~~~pl~  137 (138)
T PF10502_consen   88 GRPLPQFSGSGTVPEGEYFVLGDNRPNSFDSRYFGPVPRSQIIGKARPLW  137 (138)
T ss_dssp             -S-T----TEEE--TTEEEEE-SBTTS--SHHHH--EEGGGEEEEEEEEE
T ss_pred             cccccccCCceEeCCCEEEEecCCCCCccccCEecccCHHHEEEEEEEEE
Confidence                 112478999999999999999999999999999999999998876

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a conserved region found in the S26A family of serine endopeptidases, which function in the processing of newly-synthesised secreted proteins. Peptidase S26 removes the hydrophobic, N-terminal signal peptides as proteins are translocated across membranes. ; PDB: 3S04_B 1KN9_C 1B12_D 3IIQ_B 1T7D_A.

>cd06530 S26_SPase_I The S26 Type I signal peptidase (SPase; LepB; leader peptidase B; leader peptidase I; EC 3

Probab=99.85  E-value=5.2e-21  Score=131.49  Aligned_cols=84  Identities=44%  Similarity=0.698  Sum_probs=75.9

Q ss_pred             EEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeE
Q 030863           31 IVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVV  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~  110 (170)
                      .+.|.|+||+|++..          ||++++++.......+++||+|+|+.|.+++..++|||++               
T Consensus         2 ~~~v~g~SM~P~i~~----------gd~v~v~~~~~~~~~~~~GDiv~~~~~~~~~~~~vkRv~~---------------   56 (85)
T cd06530           2 PVVVPGGSMEPTLQP----------GDLVLVNKLSYGFREPKRGDVVVFKSPGDPGKPIIKRVIG---------------   56 (85)
T ss_pred             eeEEcCCCCcCcccC----------CCEEEEEEeecccCCCCCCCEEEEeCCCCCCCEEEEEEEE---------------
Confidence            578999999999999          9999999877433469999999999987656889999997               


Q ss_pred             EccCCeEEEecCCCCCCCCCCccccccCCCEeEEE
Q 030863          111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRV  145 (170)
Q Consensus       111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv  145 (170)
                            ||++|||+.+|.|||+||+++.++|+|++
T Consensus        57 ------~~~~gDn~~ns~d~~~~g~~~~~~i~G~~   85 (85)
T cd06530          57 ------YFVLGDNRNNSLDSRYWGPVPEDDIVGKV   85 (85)
T ss_pred             ------EEEeeCCCCCCCccCCcCCCcHHHeEEeC
Confidence                  99999999999999999999999999985

4.21.89) family members are essential membrane-bound serine proteases that function to cleave the amino-terminal signal peptide extension from proteins that are translocated across biological membranes. The bacterial signal peptidase I, which is the most intensively studied, has two N-terminal transmembrane segments inserted in the plasma membrane and a hydrophilic, C-terminal catalytic region that is located in the periplasmic space. Although the bacterial signal peptidase I is monomeric, signal peptidases of eukaryotic cells commonly function as oligomeric complexes containing two divergent copies of the catalytic monomer. These are the IMP1 and IMP2 signal peptidases of the mitochondrial inner membrane that remove leader peptides from nuclear- and mitochondrial-encoded proteins. Also, two components of the endoplasmic reticulum signal peptidase in mammals (18-kDa and 21-kDa

>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type

Probab=99.80  E-value=7.3e-19  Score=134.72  Aligned_cols=85  Identities=29%  Similarity=0.358  Sum_probs=69.8

Q ss_pred             EcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEcc
Q 030863           34 VRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVP  113 (170)
Q Consensus        34 v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp  113 (170)
                      |.|+||+||+++          ||++++++...  .++++||+|+|+.|.++ +.++|||+++.++.            .
T Consensus        36 V~g~SM~Ptl~~----------GD~vlv~~~~~--~~~~~GDIVvf~~~~~~-~~iihRVi~v~~~~------------g   90 (158)
T TIGR02228        36 VLSGSMEPTFNT----------GDLILVTGADP--NDIQVGDVITYKSPGFN-TPVTHRVIEINNSG------------G   90 (158)
T ss_pred             EcCCCCcCCccC----------CCEEEEEeccc--CCCCCCCEEEEEECCCC-ccEEEEEEEEECCC------------C
Confidence            999999999999          99999998543  48999999999998643 78999999987641            0


Q ss_pred             CCeEEEecCCCCCCCCCCccccccCCCEeEEEEE
Q 030863          114 NGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTH  147 (170)
Q Consensus       114 ~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~  147 (170)
                      +-.+++.|||+ ...|   .++|+.++|+||+..
T Consensus        91 ~~~~~tkGDnN-~~~D---~~~v~~~~IiG~v~~  120 (158)
T TIGR02228        91 ELGFITKGDNN-PAPD---GEPVPSENVIGKYLG  120 (158)
T ss_pred             cEEEEEEecCC-CCCC---cccCCHHHEEEEEEE
Confidence            11377889996 4556   689999999999983

This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=99.65  E-value=1.8e-15  Score=115.07  Aligned_cols=130  Identities=29%  Similarity=0.284  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH--HhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEec
Q 030863            4 HNFLWSLTKNCFTFGLIGLTV--SDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCS   81 (170)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~   81 (170)
                      ...+..++..++.++++++++  +.++++++.|+|+||+||++.          ||+++++|..+....+..+|++  ..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~V~s~SM~Ptl~~----------GD~v~v~k~~~~~~~~~~~~~~--~~   71 (166)
T COG0681           4 LLKFLELISSLLIAIILALIIGVRTFVFEPVVVPSGSMEPTLNV----------GDRVLVKKFSYGFGKLKVPDII--VL   71 (166)
T ss_pred             HHHHHHHHHHHHHHHHHhheeeeEEEEEEEEEECCCcccccccc----------CCEEEEEeccccccCCccceee--ec
Confidence            333557888888888888888  899999999999999999999          9999999999887889999988  45


Q ss_pred             CCCCCCceEEEEEEeCCCeEeccCCCC--eEEccCCeEEEecCC-------CCCCCCCCccccccCCCEeEEE
Q 030863           82 PSNHKEKHVKRIIGLPGDWIGTPMTND--VVKVPNGHCWVEGDN-------PSSSLDSRSFGPIPLGLVKGRV  145 (170)
Q Consensus        82 p~~~~~~~vKRVvg~~GD~v~~~~~~~--~~~vp~g~~~v~gDn-------~~~S~DSR~~G~V~~~~I~Gkv  145 (170)
                      |......++||+++++||.+.+.....  ...+|+++.++.++|       ...+.+++.++.......+.++
T Consensus        72 ~~~~~~~~~kr~~~~~GD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (166)
T COG0681          72 PAVVEGDLIKRVIGLRGDIVVFKDDRLYVVPIIPRVYGLVEKDNGKHLVDVIVNANSSRVFGIITKKDYIKRV  144 (166)
T ss_pred             CCCCCcceEEEeccCCCCEEEEECCEEEeecccCcchhhhhcccccccccccccccCccccccccccccccce
Confidence            556678899999999999999854332  356677777766544       3467777777777777777777

>COG4959 TraF Type IV secretory pathway, protease TraF [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.58  E-value=3.8e-15  Score=112.17  Aligned_cols=89  Identities=28%  Similarity=0.466  Sum_probs=73.3

Q ss_pred             EEEEEccccccCCCccceEEEEecCCC------------CCCceEEEEEEeCCCeEec----------------------
Q 030863           58 HVLMEKFCLQKYKFSHGDVIVFCSPSN------------HKEKHVKRIIGLPGDWIGT----------------------  103 (170)
Q Consensus        58 ~vlv~k~~~~~~~~~rGDiV~f~~p~~------------~~~~~vKRVvg~~GD~v~~----------------------  103 (170)
                      ...++|..   ..+++||+|+++.|..            +.-.++|||.|+|||+|++                      
T Consensus        44 lyrv~k~~---~Pvt~g~lV~v~pP~~~a~~aA~RGYLp~~~pllK~i~Alpgq~Vci~~~~I~I~G~~v~~sl~~D~~G  120 (173)
T COG4959          44 LYRVSKLS---APVTKGDLVLVCPPQRAAFLAAQRGYLPPYIPLLKRILALPGQHVCITSQGIAIDGKPVAASLPVDRVG  120 (173)
T ss_pred             EEEecccC---CCcccCCEEEECCCchHhHhHhhcCccccccHHHHHHhcCCCCcEEEecceEEECCEEeeeeccccccC
Confidence            45566655   3469999999999974            2457899999999999998                      


Q ss_pred             ---cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030863          104 ---PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL  149 (170)
Q Consensus       104 ---~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~  149 (170)
                         +....+..+-++++|+++|..+.|+|||||||||.++|+|.+..+|
T Consensus       121 R~lp~~~gcR~l~~~el~lL~~~~~~SfDsRYfGpipas~vig~aRPvw  169 (173)
T COG4959         121 RALPRWQGCRYLAPSELLLLTDRSSTSFDSRYFGPIPASQVIGVARPVW  169 (173)
T ss_pred             CcCCcccCCceecCCeEEEEeccCCcccccceecccCHHHcceeeeeee
Confidence               1223455688899999999999999999999999999999998765

>cd06462 Peptidase_S24_S26 The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families

Probab=99.26  E-value=5e-11  Score=80.48  Aligned_cols=83  Identities=48%  Similarity=0.753  Sum_probs=65.1

Q ss_pred             EEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeE
Q 030863           31 IVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVV  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~  110 (170)
                      .+.+.|+||+|++..          ||++++++..   ..++.||+|++..+.  +..++||+...++            
T Consensus         2 ~~~v~g~SM~P~i~~----------gd~v~i~~~~---~~~~~G~iv~~~~~~--~~~~ikrl~~~~~------------   54 (84)
T cd06462           2 ALRVEGDSMEPTIPD----------GDLVLVDKSS---YEPKRGDIVVFRLPG--GELTVKRVIGLPG------------   54 (84)
T ss_pred             eeEEcCCCccCcccC----------CCEEEEEecC---CCCcCCEEEEEEcCC--CcEEEEEEEEECC------------
Confidence            468999999999999          9999999876   248999999999864  4789999999875            


Q ss_pred             EccCCeEEEecCCCCCCCCCCccccccCCCEeEEE
Q 030863          111 KVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRV  145 (170)
Q Consensus       111 ~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv  145 (170)
                         ++++++.+||+ +..+.+..+. ....++|++
T Consensus        55 ---~~~~~l~~~N~-~~~~~~~~~~-~~~~i~g~v   84 (84)
T cd06462          55 ---EGHYFLLGDNP-NSPDSRIDGP-PELDIVGVV   84 (84)
T ss_pred             ---CCEEEEECCCC-CCCcccccCC-CHHHEEEeC
Confidence               25899999994 5555554332 455666653

The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The S26 type I signal peptidase (SPase) family also includes mitochondrial inner membrane protease (IMP)-like members. SPases are essential membrane-bound proteases which function to cleave away the amino-terminal signal peptide from the translocated pre-protein, thus playing a crucial role in the tr

>PF00717 Peptidase_S24: Peptidase S24-like peptidase classification

Probab=99.24  E-value=1.8e-11  Score=80.64  Aligned_cols=56  Identities=34%  Similarity=0.520  Sum_probs=45.5

Q ss_pred             EEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863           33 PVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        33 ~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~  103 (170)
                      +|.|+||+|++..          ||+|++++..    +++.||+|+|..+.+. ..++||+++.+|+.+.+
T Consensus         1 ~V~GdSM~P~i~~----------Gd~v~v~~~~----~~~~gdivv~~~~~~~-~~~iKrv~~~~~~~~~~   56 (70)
T PF00717_consen    1 RVEGDSMEPTIKD----------GDIVLVDPSS----EPKDGDIVVVKIDGDE-ELYIKRVVGEPGGIILI   56 (70)
T ss_dssp             EEESSTTGGTSST----------TEEEEEEETS-------TTSEEEEEETTEE-SEEEEEEEEETTEEEEE
T ss_pred             CeECcCcccCeeC----------CCEEEEEEcC----CCccCeEEEEEECCce-eeEEEEEEEeCCCEEEE
Confidence            5899999999999          9999999877    8999999999987532 38999999999875443

; InterPro: IPR019759 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ].; PDB: 1KCA_H 3BDN_A 1F39_A 1JHH_A 1JHE_B 3JSP_A 1JHF_B 1JHC_A 3JSO_B 1B12_D ....

>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.5e-09  Score=81.92  Aligned_cols=89  Identities=28%  Similarity=0.392  Sum_probs=65.9

Q ss_pred             EEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeE
Q 030863           31 IVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVV  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~  110 (170)
                      +..|-++||||.++.          ||.++......  ...+.||||+|+-+. ..-.++|||+-+-+..          
T Consensus        50 iVVVLSgSMePaF~R----------GDlLfL~N~~~--~p~~vGdivVf~veg-R~IPiVHRviK~he~~----------  106 (180)
T KOG3342|consen   50 IVVVLSGSMEPAFHR----------GDLLFLTNRNE--DPIRVGDIVVFKVEG-REIPIVHRVIKQHEKS----------  106 (180)
T ss_pred             EEEEEcCCcCccccc----------ccEEEEecCCC--CcceeccEEEEEECC-ccCchhHHHHHHhccc----------
Confidence            578999999999999          99999875442  357999999999874 2567999998754421          


Q ss_pred             EccCC--eEEEecCCCCCCCCCCc-c----ccccCCCEeEEEEE
Q 030863          111 KVPNG--HCWVEGDNPSSSLDSRS-F----GPIPLGLVKGRVTH  147 (170)
Q Consensus       111 ~vp~g--~~~v~gDn~~~S~DSR~-~----G~V~~~~I~Gkv~~  147 (170)
                         +|  ++...|||+  ..|-|. |    -...+++|+|+|.-
T Consensus       107 ---~~~~~~LTKGDNN--~~dD~~Ly~~gq~~L~r~~Ivg~~~G  145 (180)
T KOG3342|consen  107 ---NGHIKFLTKGDNN--AVDDRGLYAQGQNWLERKDIVGRVRG  145 (180)
T ss_pred             ---CCcEEEEecCCCC--cccchhcccccccceeccceeeEEee
Confidence               23  467789995  445553 2    23788999999863

>cd06529 S24_LexA-like Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell

Probab=98.92  E-value=9.7e-09  Score=69.06  Aligned_cols=61  Identities=34%  Similarity=0.446  Sum_probs=53.2

Q ss_pred             EEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeE
Q 030863           31 IVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVV  110 (170)
Q Consensus        31 ~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~  110 (170)
                      ...+.|+||+|++..          ||++++++..    .++.||++++..+   +..++||+...++            
T Consensus         2 ~~~v~g~sM~p~i~~----------gd~lii~~~~----~~~~g~i~~~~~~---~~~~ikr~~~~~~------------   52 (81)
T cd06529           2 ALRVKGDSMEPTIPD----------GDLVLVDPSD----TPRDGDIVVARLD---GELTVKRLQRRGG------------   52 (81)
T ss_pred             EEEEECCCcCCccCC----------CCEEEEcCCC----CCCCCCEEEEEEC---CEEEEEEEEECCC------------
Confidence            468999999999999          9999999865    6999999999986   3789999998775            


Q ss_pred             EccCCeEEEecCCC
Q 030863          111 KVPNGHCWVEGDNP  124 (170)
Q Consensus       111 ~vp~g~~~v~gDn~  124 (170)
                          +.+++.++|+
T Consensus        53 ----~~~~L~s~N~   62 (81)
T cd06529          53 ----GRLRLISDNP   62 (81)
T ss_pred             ----CcEEEEeCCC
Confidence                3788899986

This family includes: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the repressor of genes in the cellular SOS response to DNA damage; MucA and the related UmuD proteins, which are lesion-bypass DNA polymerases, induced in response to mitogenic DNA damage; RulA, a component of the rulAB locus that confers resistance to UV, and RuvA, which is a component of the RuvABC resolvasome that catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. The LexA-like proteins contain two-domains: an N-terminal DNA binding domain and a C-terminal domain (CTD) that provides LexA dimerization as well as cleavage activity. They undergo autolysis, cleaving at an Ala-Gly or a Cys-Gly bond, separating the DNA-binding domain from the rest of the

>COG2932 Predicted transcriptional regulator [Transcription]

Probab=98.89  E-value=1.5e-08  Score=80.83  Aligned_cols=89  Identities=25%  Similarity=0.244  Sum_probs=65.9

Q ss_pred             EEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCe
Q 030863           30 SIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDV  109 (170)
Q Consensus        30 ~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~  109 (170)
                      ....|.|+||+|++.+          ||.++|+.-.    ...+||.|++..-  .++.++||+...+|           
T Consensus       124 ~~i~V~GDSMeP~~~~----------Gd~ilVd~~~----~~~~gd~v~v~~~--g~~~~VK~l~~~~~-----------  176 (214)
T COG2932         124 FALRVTGDSMEPTYED----------GDTLLVDPGV----NTRRGDRVYVETD--GGELYVKKLQREPG-----------  176 (214)
T ss_pred             EEEEEeCCcccccccC----------CCEEEECCCC----ceeeCCEEEEEEe--CCeEEEEEEEEecC-----------
Confidence            5679999999999999          9999999876    6789996666543  36899999998886           


Q ss_pred             EEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeC
Q 030863          110 VKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWP  151 (170)
Q Consensus       110 ~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P  151 (170)
                           |.+.+..+|+....|--..-.-. =.|+|||++..-+
T Consensus       177 -----~~~~l~S~N~~~~~~~~~~~~~~-v~iIgrVv~~~~~  212 (214)
T COG2932         177 -----GLLRLVSLNPDYYPDEIFSEDDD-VEIIGRVVWVSRL  212 (214)
T ss_pred             -----CeEEEEeCCCCCCcccccCccce-EEEEEEEEEEeee
Confidence                 56779999985433333211111 3489999987654

>PRK10276 DNA polymerase V subunit UmuD; Provisional

Probab=98.59  E-value=6.7e-07  Score=66.95  Aligned_cols=85  Identities=22%  Similarity=0.196  Sum_probs=60.5

Q ss_pred             eEEEEEcCCCcc-cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030863           29 ASIVPVRGSSMS-PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~  107 (170)
                      ....+|.|+||. |++..          ||++++++-.    +++.||+|++...   ++..+||+.-.           
T Consensus        51 ~f~l~V~GdSM~~~~I~~----------GD~liVd~~~----~~~~Gdivv~~~~---g~~~vKrl~~~-----------  102 (139)
T PRK10276         51 TYFVKASGDSMIDAGISD----------GDLLIVDSAI----TASHGDIVIAAVD---GEFTVKKLQLR-----------  102 (139)
T ss_pred             EEEEEEecCCCCCCCCCC----------CCEEEEECCC----CCCCCCEEEEEEC---CEEEEEEEEEC-----------
Confidence            456899999998 68999          9999999765    6789999998762   46789998742           


Q ss_pred             CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEe
Q 030863          108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILW  150 (170)
Q Consensus       108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~  150 (170)
                             +++++..+|+..  ....+-.-..=.|+|+|++++-
T Consensus       103 -------~~~~L~s~N~~y--~~i~i~~~~~~~IiG~V~~~~~  136 (139)
T PRK10276        103 -------PTVQLIPMNSAY--SPITISSEDTLDVFGVVTHIVK  136 (139)
T ss_pred             -------CcEEEEcCCCCC--CCEEcCCCCcEEEEEEEEEEEE
Confidence                   257788888632  1211111112279999988764

>TIGR00498 lexA SOS regulatory protein LexA

Probab=98.50  E-value=1.8e-06  Score=67.95  Aligned_cols=88  Identities=17%  Similarity=0.192  Sum_probs=65.5

Q ss_pred             eeEEEEEcCCCcc-cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCC
Q 030863           28 YASIVPVRGSSMS-PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT  106 (170)
Q Consensus        28 ~~~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~  106 (170)
                      -...+.+.|+||. |++..          ||++++++..    .++.||+|++..   .++..+||+.-. +        
T Consensus       110 ~~f~~~V~GdSM~~~~i~~----------Gd~v~v~~~~----~~~~G~ivvv~~---~~~~~vKrl~~~-~--------  163 (199)
T TIGR00498       110 AVFLLKVMGDSMVDAGICD----------GDLLIVRSQK----DARNGEIVAAMI---DGEVTVKRFYKD-G--------  163 (199)
T ss_pred             CEEEEEecCCCCCCCCCCC----------CCEEEEecCC----CCCCCCEEEEEE---CCEEEEEEEEEE-C--------
Confidence            4567899999996 57999          9999999754    789999999997   357899998754 2        


Q ss_pred             CCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCC
Q 030863          107 NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPP  152 (170)
Q Consensus       107 ~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~  152 (170)
                              +++++..+|+...  ...... ..=.|+|+|+..+..+
T Consensus       164 --------~~i~L~s~N~~y~--~i~~~~-~~~~IiG~Vv~~~r~~  198 (199)
T TIGR00498       164 --------TKVELKPENPEFD--PIVLNA-EDVTILGKVVGVIRNF  198 (199)
T ss_pred             --------CEEEEEcCCCCCc--CCcCCC-CcEEEEEEEEEEEEec
Confidence                    4788899987421  111110 1348999999888654

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PRK00215 LexA repressor; Validated

Probab=98.47  E-value=2.2e-06  Score=67.79  Aligned_cols=86  Identities=26%  Similarity=0.326  Sum_probs=63.8

Q ss_pred             eeEEEEEcCCCcc-cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCC
Q 030863           28 YASIVPVRGSSMS-PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT  106 (170)
Q Consensus        28 ~~~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~  106 (170)
                      -.....|.|+||. |++.+          ||++++++..    .++.||+|++...   +...+||+.-..         
T Consensus       117 ~~~~~~V~GdSM~~~~i~~----------Gd~v~v~~~~----~~~~G~ivv~~~~---~~~~vKrl~~~~---------  170 (205)
T PRK00215        117 EDFLLRVRGDSMIDAGILD----------GDLVIVRKQQ----TARNGQIVVALID---DEATVKRFRREG---------  170 (205)
T ss_pred             CeEEEEEccCCCCCCCcCC----------CCEEEEeCCC----CCCCCCEEEEEEC---CEEEEEEEEEeC---------
Confidence            3556889999995 79999          9999999754    6789999999875   378999998542         


Q ss_pred             CCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEe
Q 030863          107 NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILW  150 (170)
Q Consensus       107 ~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~  150 (170)
                              |.+++..||+..  +.....+= .-.|+|+|+..+-
T Consensus       171 --------~~~~L~s~Np~y--~~~~~~~~-~~~IiG~Vv~~~r  203 (205)
T PRK00215        171 --------GHIRLEPENPAY--EPIIVDPD-RVTIEGKVVGLIR  203 (205)
T ss_pred             --------CEEEEEcCCCCC--CCEEeCCC-cEEEEEEEEEEEE
Confidence                    478888998742  22221110 3589999988764

>PRK12423 LexA repressor; Provisional

Probab=98.43  E-value=2.6e-06  Score=67.57  Aligned_cols=85  Identities=18%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             EEEEEcCCCcc-cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCC
Q 030863           30 SIVPVRGSSMS-PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND  108 (170)
Q Consensus        30 ~~~~v~~~SM~-Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~  108 (170)
                      ....|.|+||. |++..          ||++++++-.    .++.||+|++...   ++..+||+.-..           
T Consensus       115 f~l~V~GdSM~~~~i~~----------Gd~viv~~~~----~~~~Gdivv~~~~---~~~~vKrl~~~~-----------  166 (202)
T PRK12423        115 YLLQVQGDSMIDDGILD----------GDLVGVHRSP----EARDGQIVVARLD---GEVTIKRLERSG-----------  166 (202)
T ss_pred             EEEEEecCcCCCCCcCC----------CCEEEEeCCC----cCCCCCEEEEEEC---CEEEEEEEEEeC-----------
Confidence            46799999997 79999          9999999754    7889999999863   468899997543           


Q ss_pred             eEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEe
Q 030863          109 VVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILW  150 (170)
Q Consensus       109 ~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~  150 (170)
                            +.+++..+|+.  ++...+-+-..=.|+|+++..+-
T Consensus       167 ------~~~~L~s~N~~--y~~i~~~~~~~~~I~Gvv~g~~r  200 (202)
T PRK12423        167 ------DRIRLLPRNPA--YAPIVVAPDQDFAIEGVFCGLIR  200 (202)
T ss_pred             ------CEEEEEcCCCC--CCCEEcCCCCcEEEEEEEEEEEE
Confidence                  37888889863  22222211123479999988764

>COG1974 LexA SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]

Probab=97.84  E-value=0.00035  Score=55.61  Aligned_cols=89  Identities=19%  Similarity=0.217  Sum_probs=66.7

Q ss_pred             eeEEEEEcCCCccc-ccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCC
Q 030863           28 YASIVPVRGSSMSP-TFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMT  106 (170)
Q Consensus        28 ~~~~~~v~~~SM~P-tl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~  106 (170)
                      -.+..+|.|+||.. .+..          ||.|+|++-.    +++.||+|+...+.  ++..+||..--.         
T Consensus       111 ~~f~L~V~GdSM~~~gi~d----------GDlvvV~~~~----~a~~GdiVvA~i~g--~e~TvKrl~~~g---------  165 (201)
T COG1974         111 ATFFLRVSGDSMIDAGILD----------GDLVVVDPTE----DAENGDIVVALIDG--EEATVKRLYRDG---------  165 (201)
T ss_pred             ceEEEEecCCccccCcCCC----------CCEEEEcCCC----CCCCCCEEEEEcCC--CcEEEEEEEEeC---------
Confidence            35578999999974 4555          9999999765    89999999999864  568899988643         


Q ss_pred             CCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCC
Q 030863          107 NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPP  152 (170)
Q Consensus       107 ~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~  152 (170)
                              ++++++.-|+  .+.+..+..- .-.|.|+++.++|+.
T Consensus       166 --------~~i~L~p~Np--~~~~i~~~~~-~~~I~G~vvgv~r~~  200 (201)
T COG1974         166 --------NQILLKPENP--AYPPIPVDAD-SVTILGKVVGVIRDI  200 (201)
T ss_pred             --------CEEEEEeCCC--CCCCcccCcc-ceEEEEEEEEEEecC
Confidence                    3788888886  2333332222 457999999999975

>TIGR02594 conserved hypothetical protein TIGR02594

Probab=86.60  E-value=3.8  Score=30.21  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=35.0

Q ss_pred             CCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeE
Q 030863           70 KFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKG  143 (170)
Q Consensus        70 ~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~G  143 (170)
                      ++++||+|+|+..   +.-.+.-+++...+              .|+++++|-|..+..-   .-..+++.|+|
T Consensus        73 ~p~~GDiv~f~~~---~~~HVGi~~g~~~~--------------~g~i~~lgGNq~~~V~---~~~~~~~~~~~  126 (129)
T TIGR02594        73 KPAYGCIAVKRRG---GGGHVGFVVGKDKQ--------------TGTIIVLGGNQGDRVR---EALYSRSRIVA  126 (129)
T ss_pred             CCCccEEEEEECC---CCCEEEEEEeEcCC--------------CCEEEEeeCCCCCeEE---EEEEecccEEE
Confidence            6899999999854   23467777766543              3688999988654332   22345555554

Members of this protein family known so far are restricted to the bacteria, and for the most to the proteobacteria. The function is unknown.

>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]

Probab=80.68  E-value=2  Score=31.99  Aligned_cols=13  Identities=31%  Similarity=0.414  Sum_probs=10.9

Q ss_pred             CCccceEEEEecC
Q 030863           70 KFSHGDVIVFCSP   82 (170)
Q Consensus        70 ~~~rGDiV~f~~p   82 (170)
                      ...+||+|+|+.+
T Consensus        84 ~~~~GD~i~~~~~   96 (166)
T COG0681          84 IGLRGDIVVFKDD   96 (166)
T ss_pred             ccCCCCEEEEECC
Confidence            4689999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	2e-06
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	3e-04

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248

 Score = 44.9 bits (106), Expect = 2e-06
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 28/80 (35%)

Query: 37  SSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFS---------------HGDVIVFCS 81
            SM PT           L  D +L+EKF    Y                   GD++VF  
Sbjct: 14  GSMMPTL----------LIGDFILVEKF---AYGIKDPIYQKTLIETGHPKRGDIVVFKY 60

Query: 82  PSNHKEKHVKRIIGLPGDWI 101
           P + K  ++KR +GLPGD +
Sbjct: 61  PEDPKLDYIKRAVGLPGDKV 80

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A* Length = 248

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 16/44 (36%), Positives = 22/44 (50%)

Query: 107 NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILW 150
                VP G  ++ GDN  +S DSR +G +P   + GR T I  
Sbjct: 183 LATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWM 226

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
1b12_A	248	Signal peptidase I; serine proteinase, serine-depe	100.0
1kca_A	109	Repressor protein CI; gene regulation, DNA-binding	99.43
1umu_A	116	UMUD'; induced mutagenesis, SOS mutagenesis, DNA r	99.21
2hnf_A	133	Repressor protein CI101-229DM-K192A; viral protein	99.01
1jhf_A	202	LEXA repressor; LEXA SOS repressor, hydrolase; 1.8	98.98
3bdn_A	236	Lambda repressor; repressor, allostery; HET: DNA;	98.96
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	98.67
2fjr_A	189	Repressor protein CI; genetic switch, regulation,	96.49

>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*

Probab=100.00  E-value=1.5e-35  Score=240.27  Aligned_cols=123  Identities=32%  Similarity=0.441  Sum_probs=107.0

Q ss_pred             HHhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEccccc------------cCCCccceEEEEecCCCCCCceEE
Q 030863           24 VSDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQ------------KYKFSHGDVIVFCSPSNHKEKHVK   91 (170)
Q Consensus        24 i~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~------------~~~~~rGDiV~f~~p~~~~~~~vK   91 (170)
                      ++.|+++++.|+|+||+|||..          ||+|+++|..|.            ..++++||||+|+.|.+++..+||
T Consensus         1 ir~fv~~~~~v~g~SM~Ptl~~----------GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~~~~~~iK   70 (248)
T 1b12_A            1 VRSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIK   70 (248)
T ss_dssp             -CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEE
T ss_pred             CeEEEEEEEEeccccccccccC----------CCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCCCCceEEE
Confidence            4678999999999999999999          999999998653            258999999999999877889999


Q ss_pred             EEEEeCCCeEeccCC-----------------------------------------------------------------
Q 030863           92 RIIGLPGDWIGTPMT-----------------------------------------------------------------  106 (170)
Q Consensus        92 RVvg~~GD~v~~~~~-----------------------------------------------------------------  106 (170)
                      ||+|+|||+|++...                                                                 
T Consensus        71 RViglpGD~v~i~~~~~~l~ING~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~  150 (248)
T 1b12_A           71 RAVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSE  150 (248)
T ss_dssp             EEEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEE
T ss_pred             EEEeeCCCEEEEEcCceEEEECCccccccccccceeeeeeccccccccccccccccccccccccccccccccccchhhhh
Confidence            999999999976211                                                                 


Q ss_pred             --------------------------------CCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCC
Q 030863          107 --------------------------------NDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR  154 (170)
Q Consensus       107 --------------------------------~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~  154 (170)
                                                      ..+++||+|||||+|||+++|.|||+||+||+++|+|||.++|||+++
T Consensus       151 ~~e~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~VP~g~yFvmGDNR~nS~DSR~~G~Vp~~~IvGka~~i~~s~~~  230 (248)
T 1b12_A          151 RKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK  230 (248)
T ss_dssp             EEEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred             HHhhhcCccceeEecCCccccccchhcccccccccEEeCCCcEEEecCCCcccCCCCcccccCHHHeEEEEEEEEEeCCc
Confidence                                            013589999999999999999999999999999999999999999987


Q ss_pred             cc
Q 030863          155 VR  156 (170)
Q Consensus       155 ~g  156 (170)
                      .+
T Consensus       231 ~~  232 (248)
T 1b12_A          231 QE  232 (248)
T ss_dssp             --
T ss_pred             cc
Confidence            64

>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1

Probab=99.43  E-value=1.4e-12  Score=92.81  Aligned_cols=90  Identities=22%  Similarity=0.311  Sum_probs=71.9

Q ss_pred             EEEEEcCCCcc------cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863           30 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~  103 (170)
                      ....|.|+||+      |+|.+          ||++++++..    +++.||+|++..+.  ++..+||++..+      
T Consensus        14 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~Vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------   71 (109)
T 1kca_A           14 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------   71 (109)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECST--TCEEEEEEEEET------
T ss_pred             EEEEEeCcCcCCCCCCCCeeCC----------CCEEEEecCC----cCCCCCEEEEEECC--CeEEEEEEEEeC------
Confidence            46889999999      99999          9999999865    68999999998753  478999999754      


Q ss_pred             cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcc
Q 030863          104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR  156 (170)
Q Consensus       104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g  156 (170)
                                 |++++.+||+...  ....-  ..-.|+|+|++.+||+..||
T Consensus        72 -----------~~~~L~s~N~~y~--~~~~~--~~~~IiG~Vv~~~~~~~~~~  109 (109)
T 1kca_A           72 -----------GQVFLQPLNPQYP--MIPCN--ESCSVVGKVIASQWPEETFG  109 (109)
T ss_dssp             -----------TEEEEECSSTTSC--CEECC--TTCEEEEEEEEEECCGGGGC
T ss_pred             -----------CEEEEEECCCCCC--CEEcC--CCcEEEEEEEEEEeCHHHcC
Confidence                       4889999997321  22111  35689999999999987664

>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A

Probab=99.21  E-value=6.7e-11  Score=84.56  Aligned_cols=88  Identities=20%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             eEEEEEcCCCccc-ccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030863           29 ASIVPVRGSSMSP-TFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM~P-tl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~  107 (170)
                      .....|.|+||+| ++..          ||++++++..    +++.||+|++..+   +...+||+...+          
T Consensus        27 ~~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~gdivv~~~~---~~~~vKr~~~~~----------   79 (116)
T 1umu_A           27 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAVD---GEFTVKKLQLRP----------   79 (116)
T ss_dssp             EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEET---TEEEEEEEECSS----------
T ss_pred             EEEEEECCCCcCCCCCCC----------CCEEEEEcCC----CCCCCCEEEEEEC---CEEEEEEEEeCC----------
Confidence            4578999999999 8999          9999999865    6899999999874   478999998632          


Q ss_pred             CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCC
Q 030863          108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQ  153 (170)
Q Consensus       108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~  153 (170)
                              .+++.+||+.  +....+..-..-.|+|+|++.+..+.
T Consensus        80 --------~~~L~s~N~~--y~~~~i~~~~~~~IiG~Vv~~~r~~r  115 (116)
T 1umu_A           80 --------TVQLIPMNSA--YSPITISSEDTLDVFGVVIHVVKAAT  115 (116)
T ss_dssp             --------SCEEECSSTT--SCCEECCTTSCEEEEEEEEEEEC---
T ss_pred             --------cEEEECCCCC--CCCEEcCCCCeEEEEEEEEEEEEecC
Confidence                    5778899863  22222111123479999999887654

>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A

Probab=99.01  E-value=2e-09  Score=78.69  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             EEEEEcCCCcc------cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863           30 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~  103 (170)
                      ...+|.|+||+      |++..          ||+|++++..    +++.||+|++..+.  ++..+||+...+      
T Consensus        45 f~~~V~GdSM~~~~g~~p~i~~----------Gd~v~vd~~~----~~~~Gdivv~~~~~--~~~~vKrl~~~~------  102 (133)
T 2hnf_A           45 FWLEVEGNSMTTPTGSKTSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFAKLIRDS------  102 (133)
T ss_dssp             EEEECCSSTTCCC---CCCCCT----------TCEEEEETTS----CCCTTSEEEEEETT--TEEEEEEEEEET------
T ss_pred             EEEEEeCCCcCCCcCCCCccCC----------CCEEEEccCC----CCCCCCEEEEEECC--CEEEEEEEEEeC------
Confidence            46889999999      99999          9999999864    78999999998753  478999998643      


Q ss_pred             cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEE
Q 030863          104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHI  148 (170)
Q Consensus       104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~  148 (170)
                                 |.+++.+||+..  .....-  ..-.|+|+|++.
T Consensus       103 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~  132 (133)
T 2hnf_A          103 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIAS  132 (133)
T ss_dssp             -----------TEEEEECSSTTS--CCEECS--TTEEEEEEEEEE
T ss_pred             -----------CeEEEEECCCCC--CCEEcC--CCCEEEEEEEEE
Confidence                       478899999732  122111  345799999875

>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A

Probab=98.98  E-value=2.3e-09  Score=83.00  Aligned_cols=87  Identities=18%  Similarity=0.172  Sum_probs=64.8

Q ss_pred             EEEEEcCCCcccc-cCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCC
Q 030863           30 SIVPVRGSSMSPT-FNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND  108 (170)
Q Consensus        30 ~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~  108 (170)
                      ....|.|+||+|+ +.+          ||++++++..    +++.||+|++...   +...+||+. .++          
T Consensus       111 ~~~~v~GdSM~p~~i~~----------Gd~v~vd~~~----~~~~G~i~v~~~~---~~~~vKrl~-~~~----------  162 (202)
T 1jhf_A          111 FLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARID---DEVTVKRLK-KQG----------  162 (202)
T ss_dssp             EEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEET---TEEEEEEEE-EET----------
T ss_pred             EEEEECCCCCCCCCCCC----------CCEEEEeccC----CcCCCeEEEEEEC---CEEEEEEEE-EeC----------
Confidence            5688999999999 999          9999999764    6899999999873   578999998 454          


Q ss_pred             eEEccCCeEEEecCCCCCCCCCCcccc-ccCCCEeEEEEEEEeCC
Q 030863          109 VVKVPNGHCWVEGDNPSSSLDSRSFGP-IPLGLVKGRVTHILWPP  152 (170)
Q Consensus       109 ~~~vp~g~~~v~gDn~~~S~DSR~~G~-V~~~~I~Gkv~~~~~P~  152 (170)
                            |.+++.+||+.  +....+.+ -..-.|+|+|++.+..+
T Consensus       163 ------~~~~l~s~N~~--y~~~~~~~~~~~~~IiG~Vv~~~r~~  199 (202)
T 1jhf_A          163 ------NKVELLPENSE--FKPIVVDLRQQSFTIEGLAVGVIRNG  199 (202)
T ss_dssp             ------TEEEEECSSTT--CCCEEEETTTSCEEEEEEEEEEEEC-
T ss_pred             ------CEEEEEECCCC--CCCEEccCCCCceEEEEEEEEEEEcc
Confidence                  47888999863  22221110 11235999999988654

>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}

Probab=98.96  E-value=2.3e-09  Score=84.49  Aligned_cols=90  Identities=22%  Similarity=0.299  Sum_probs=69.4

Q ss_pred             EEEEEcCCCcc------cccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863           30 SIVPVRGSSMS------PTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM~------Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~  103 (170)
                      ....|.|+||+      |++.+          ||+|++++..    .++.||+|++...  .+...+||+...+      
T Consensus       141 ~~l~V~GdSM~~~~g~~P~i~~----------Gd~v~vd~~~----~~~~g~ivv~~~~--~~~~~vKrl~~~~------  198 (236)
T 3bdn_A          141 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLG--GDEFTFKKLIRGS------  198 (236)
T ss_dssp             EEEECCSSSSCCCSSCSSCCCS----------SCEEEECCSS----CCCTTSEEEEEST--TTCCCCEEEECCS------
T ss_pred             EEEEEeCCCcCCCCCCCCcCCC----------CCEEEECCCC----CCCCCcEEEEEEC--CCeEEEEEEEEcC------
Confidence            46789999999      99999          9999998754    7899999999873  3578999998643      


Q ss_pred             cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcc
Q 030863          104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR  156 (170)
Q Consensus       104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g  156 (170)
                                 |.+++.+||+..  .....-  ..-.|+|+|+..+||...|+
T Consensus       199 -----------~~~~L~s~N~~y--~~~~~~--~~~~IiG~Vv~~~~~~~~~~  236 (236)
T 3bdn_A          199 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG  236 (236)
T ss_dssp             -----------SSCEEECSSTTS--CCBC----CCCEEEEEEEECCCCSSSCC
T ss_pred             -----------CcEEEEeCCCCC--CCeecC--CCcEEEEEEEEEEcCHHhcC
Confidence                       467888998632  222111  34579999999999987664

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=98.67  E-value=1.7e-07  Score=72.43  Aligned_cols=85  Identities=18%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             eEEEEEcCCCc-ccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030863           29 ASIVPVRGSSM-SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~  107 (170)
                      .....|.|+|| +|++.+          ||++++++..    .++.||+|++...   ++..+||+.-.+          
T Consensus       109 ~f~l~v~GdSM~~p~i~~----------GD~viv~~~~----~~~~G~ivv~~~~---~~~~vKr~~~~~----------  161 (196)
T 3k2z_A          109 HFLLKVKGESMIEEHICD----------GDLVLVRRQD----WAQNGDIVAAMVD---GEVTLAKFYQRG----------  161 (196)
T ss_dssp             EEEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTCEEEEEET---TEEEEEEEEEET----------
T ss_pred             EEEEEEeCCCcCCCCCCC----------CCEEEEeccC----cCCCCCEEEEEEC---CcEEEEEEEEEC----------
Confidence            45789999999 699999          9999999864    7899999999874   578999997543          


Q ss_pred             CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEe
Q 030863          108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILW  150 (170)
Q Consensus       108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~  150 (170)
                             |.+++..||+..  .....- -..-.|+|+|+.++-
T Consensus       162 -------~~~~L~~~N~~y--~~i~i~-~~~~~i~G~Vv~~~r  194 (196)
T 3k2z_A          162 -------DTVELRPANREM--SSMFFR-AEKVKILGKVVGVFR  194 (196)
T ss_dssp             -------TEEEEECSCTTS--CCEEEE-GGGCEEEEEEEEEEE
T ss_pred             -------CEEEEEECCCCC--CCEEec-CCCEEEEEEEEEEEE
Confidence                   588899999732  222211 134589999998874

>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A

Probab=96.49  E-value=0.013  Score=43.88  Aligned_cols=66  Identities=17%  Similarity=0.149  Sum_probs=47.1

Q ss_pred             CcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCCeEEccCCeEEEecCCCCCCCCCCcccc
Q 030863           56 DDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGP  135 (170)
Q Consensus        56 gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~  135 (170)
                      ||+|++++-     .+..|+++++...   +...+||+.-.+|                |.+.+..||+    + ...- 
T Consensus       122 Gd~v~Vd~~-----~~~~g~i~vv~~~---g~~~vKrl~~~~~----------------~~i~L~s~N~----~-~~i~-  171 (189)
T 2fjr_A          122 GKIYFVDKQ-----ASLSDGLWLVDIK---GAISIRELTKLPG----------------RKLHVAGGKV----P-FECG-  171 (189)
T ss_dssp             TEEEEEETT-----CCSCSEEEEEEET---TEEEEEEEEEETT----------------TEEEEESSSS----C-EEEE-
T ss_pred             CcEEEEEcC-----CccCCCEEEEEeC---CeEEEEEEEECCC----------------CEEEEEeCCC----C-eEec-
Confidence            999999975     2567999999863   5789999987665                4677888886    1 1111 


Q ss_pred             ccCCCEeEEEEEEEeC
Q 030863          136 IPLGLVKGRVTHILWP  151 (170)
Q Consensus       136 V~~~~I~Gkv~~~~~P  151 (170)
                      ...=.|+|||++.+-.
T Consensus       172 ~~~i~IiG~Vv~~~r~  187 (189)
T 2fjr_A          172 IDDIKTLGRVVGVYSE  187 (189)
T ss_dssp             TTSSEEEEEEEEEEEE
T ss_pred             ccceEEEEEEEEEEEe
Confidence            1334699999987643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1b12a_	247	b.87.1.2 (A:) Type 1 signal peptidase {Escherichia	2e-10
d1b12a_	247	b.87.1.2 (A:) Type 1 signal peptidase {Escherichia	0.002

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 55.7 bits (133), Expect = 2e-10
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 6/86 (6%)

Query: 66  LQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNGHCWVEGDNPS 125
           L + K + GDV          +  V      PG  + T        VP G  ++ GDN  
Sbjct: 147 LSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLAT------WIVPPGQYFMMGDNRD 200

Query: 126 SSLDSRSFGPIPLGLVKGRVTHILWP 151
           +S DSR +G +P   + GR T I   
Sbjct: 201 NSADSRYWGFVPEANLVGRATAIWMS 226

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]} Length = 247

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 22/94 (23%)

Query: 34  VRGSSMSPTFNPTTDSFMGSLSDDHVLMEKF------------CLQKYKFSHGDVIVFCS 81
           +   SM PT           L  D +L+EKF             ++      GD++VF  
Sbjct: 10  IPSGSMMPTL----------LIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKY 59

Query: 82  PSNHKEKHVKRIIGLPGDWIGTPMTNDVVKVPNG 115
           P + K  ++KR +GLPGD +     +  + +  G
Sbjct: 60  PEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQPG 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1b12a_	247	Type 1 signal peptidase {Escherichia coli [TaxId:	100.0
d1f39a_	101	lambda repressor C-terminal domain {Bacteriophage	99.21
d1jhfa2	126	LexA C-terminal domain {Escherichia coli [TaxId: 5	98.92
d1umua_	105	UmuD' {Escherichia coli [TaxId: 562]}	98.73

>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: Type 1 signal peptidase
domain: Type 1 signal peptidase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-37  Score=244.80  Aligned_cols=120  Identities=32%  Similarity=0.444  Sum_probs=107.4

Q ss_pred             HhceeEEEEEcCCCcccccCCCCCCCCCCCCCcEEEEEcccccc------------CCCccceEEEEecCCCCCCceEEE
Q 030863           25 SDRYASIVPVRGSSMSPTFNPTTDSFMGSLSDDHVLMEKFCLQK------------YKFSHGDVIVFCSPSNHKEKHVKR   92 (170)
Q Consensus        25 ~~~~~~~~~v~~~SM~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~------------~~~~rGDiV~f~~p~~~~~~~vKR   92 (170)
                      +.|+++++.|+++||+|||+.          ||+|+|+|+.|..            ..+++||+|+|..|.++...++||
T Consensus         1 R~f~~~~f~IPs~SMePTL~~----------GD~l~V~K~~Yg~r~P~~~~~~~~~~~~~rgdivvf~~p~~~~~~~ikR   70 (247)
T d1b12a_           1 RSFIYEPFQIPSGSMMPTLLI----------GDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKR   70 (247)
T ss_dssp             CBCCEEEEECCSCTTTTTSCT----------TEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTCTTSEEEEE
T ss_pred             CEEEEEEEEeCcccccchhcc----------CCEEEEEccccCccCCccCcccccccCcccCceeeecCCCCCCcccccc
Confidence            368999999999999999999          9999999988754            355999999999999888899999


Q ss_pred             EEEeCCCeEecc--------------------------------------------------------------------
Q 030863           93 IIGLPGDWIGTP--------------------------------------------------------------------  104 (170)
Q Consensus        93 Vvg~~GD~v~~~--------------------------------------------------------------------  104 (170)
                      |+|+|||++.+.                                                                    
T Consensus        71 ~ig~pGD~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (247)
T d1b12a_          71 AVGLPGDKVTYDPVSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETKENGIRLSER  150 (247)
T ss_dssp             EEECTTCEEEEETTTTEEEEETTCCSSCCCCCCCCEEECCCEEEEEEEEEECGGGSCEEEEEEECCTTCCCTTEEEEEEE
T ss_pred             ccCCCCCeEEEecccceEEecccccccceeecceeecccccCcccceeeeeeccCceeccceeeccccccccCceEeeee
Confidence            999999999750                                                                    


Q ss_pred             -----------------------------CCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCC
Q 030863          105 -----------------------------MTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQR  154 (170)
Q Consensus       105 -----------------------------~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~  154 (170)
                                                   .....++||+|||||||||+++|.|||+||+||+++|+|||.+++||+++
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vp~~~yfvmGDNR~nS~DSR~wG~Vp~~~I~Gka~~i~~p~~~  229 (247)
T d1b12a_         151 KETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNRDNSADSRYWGFVPEANLVGRATAIWMSFDK  229 (247)
T ss_dssp             EEEETTEEEEEEECTTCCCCGGGSCCCTTCCTTEEECCTTEEEEECSBTTSCCCHHHHCCEEGGGEEEEEEEEEEEBC-
T ss_pred             eeccCCcceeEEecccchhcccccccCCccccceEEEeCCeEEEecCCCCCCccccccCcCCHHHeEEEEEEEEEECCC
Confidence                                         01135789999999999999999999999999999999999999999865

>d1f39a_ b.87.1.1 (A:) lambda repressor C-terminal domain {Bacteriophage lambda [TaxId: 10710]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: lambda repressor C-terminal domain
species: Bacteriophage lambda [TaxId: 10710]

Probab=99.21  E-value=7.8e-11  Score=81.04  Aligned_cols=90  Identities=22%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             EEEEEcCCCc------ccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEec
Q 030863           30 SIVPVRGSSM------SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGT  103 (170)
Q Consensus        30 ~~~~v~~~SM------~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~  103 (170)
                      +..+|.|+||      +|++.+          ||+|++++-.    +++.||+|++....  +...+||+.-.+      
T Consensus         6 F~l~V~GdSM~~~~~~ep~i~~----------Gd~viVd~~~----~~~~g~ivva~~~~--~~~~vKr~~~~~------   63 (101)
T d1f39a_           6 FWLEVEGNSMTAPTGSKPSFPD----------GMLILVDPEQ----AVEPGDFCIARLGG--DEFTFKKLIRDS------   63 (101)
T ss_dssp             EEEECCSSTTCCCTTCSSCCCT----------TCEEEEETTS----CCCTTCEEEEECTT--SCEEEEEEEEET------
T ss_pred             EEEEEeCCccCCCcccCCCcCC----------CCEEEEEecC----ccCCCCEEEEEECC--CeEEEEEEEEcC------
Confidence            4578999999      899999          9999999864    78999999887653  457899997543      


Q ss_pred             cCCCCeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEEeCCCCcc
Q 030863          104 PMTNDVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHILWPPQRVR  156 (170)
Q Consensus       104 ~~~~~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~~P~~~~g  156 (170)
                                 |++++..+|+..  ......  ..-.|+|+|+..+||-..||
T Consensus        64 -----------~~~~L~s~N~~y--~~i~~~--~~~~IiG~Vv~s~~p~~~~~  101 (101)
T d1f39a_          64 -----------GQVFLQPLNPQY--PMIPCN--ESCSVVGKVIASQWPEETFG  101 (101)
T ss_dssp             -----------TEEEEECSSTTS--CCEECS--TTCEEEEEEEEEECCGGGGC
T ss_pred             -----------CEEEEEECCCCC--CCCcCC--CCcEEEEEEEEEECcHHHCC
Confidence                       488899999742  222221  34589999999999988775

>d1jhfa2 b.87.1.1 (A:73-198) LexA C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: LexA C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=3.4e-09  Score=75.29  Aligned_cols=84  Identities=18%  Similarity=0.139  Sum_probs=63.7

Q ss_pred             EEEEEcCCCcccc-cCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCCC
Q 030863           30 SIVPVRGSSMSPT-FNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTND  108 (170)
Q Consensus        30 ~~~~v~~~SM~Pt-l~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~~  108 (170)
                      ...+|.|+||+|+ +..          ||++++++..    +++.||+|++...   ++..+||+.-.+           
T Consensus        39 f~lrV~GdSM~~~~i~~----------gd~viv~~~~----~~~~G~ivv~~~~---ge~~vKrl~~~~-----------   90 (126)
T d1jhfa2          39 FLLRVSGMSMKDIGIMD----------GDLLAVHKTQ----DVRNGQVVVARID---DEVTVKRLKKQG-----------   90 (126)
T ss_dssp             EEEECCSSTTGGGTCCT----------TCEEEEEECS----CCCTTSEEEEEET---TEEEEEEEEEET-----------
T ss_pred             EEEEEcCCcccCcccCC----------CEEEEEeccc----cccCCCEEEEEEC---CEEEEEEEEEcC-----------
Confidence            4689999999998 888          9999999764    8999999999984   578999998644           


Q ss_pred             eEEccCCeEEEecCCCCCCCCCCcccc-ccCCCEeEEEEEEE
Q 030863          109 VVKVPNGHCWVEGDNPSSSLDSRSFGP-IPLGLVKGRVTHIL  149 (170)
Q Consensus       109 ~~~vp~g~~~v~gDn~~~S~DSR~~G~-V~~~~I~Gkv~~~~  149 (170)
                            |.+++..+|+...  ...+.+ =..=.|+|+|+.++
T Consensus        91 ------~~~~L~s~N~~y~--pi~~~~~~~~~~IiG~Vv~vi  124 (126)
T d1jhfa2          91 ------NKVELLPENSEFK--PIVVDLRQQSFTIEGLAVGVI  124 (126)
T ss_dssp             ------TEEEEECSSTTCC--CEEEETTTSCEEEEEEEEEEE
T ss_pred             ------CEEEEecCCcCCC--CeEccCCCCcEEEEEEEEEEE
Confidence                  4889999997422  221110 01126999999886

>d1umua_ b.87.1.1 (A:) UmuD' {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: LexA/Signal peptidase
superfamily: LexA/Signal peptidase
family: LexA-related
domain: UmuD'
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=3.1e-08  Score=68.25  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             eEEEEEcCCCc-ccccCCCCCCCCCCCCCcEEEEEccccccCCCccceEEEEecCCCCCCceEEEEEEeCCCeEeccCCC
Q 030863           29 ASIVPVRGSSM-SPTFNPTTDSFMGSLSDDHVLMEKFCLQKYKFSHGDVIVFCSPSNHKEKHVKRIIGLPGDWIGTPMTN  107 (170)
Q Consensus        29 ~~~~~v~~~SM-~Ptl~~~~~~~~~~~~gd~vlv~k~~~~~~~~~rGDiV~f~~p~~~~~~~vKRVvg~~GD~v~~~~~~  107 (170)
                      .+..+|.|+|| .|.+.+          ||++++++..    +++.||+|++...   ++..+||+.- .          
T Consensus        20 ~f~~rV~GdSM~~~gI~~----------GDlliVd~~~----~~~~g~ivva~i~---ge~~vKrl~~-~----------   71 (105)
T d1umua_          20 TYFVKASGDSMIDGGISD----------GDLLIVDSAI----TASHGDIVIAAVD---GEFTVKKLQL-R----------   71 (105)
T ss_dssp             EEEEECCSSTTGGGTCCT----------TCEEEEETTS----CCCTTCEEEEEET---TEEEEEEEEC-S----------
T ss_pred             eEEEEEcCCccccCccCC----------CCEEEEEccc----ccccCcEEEEEEC---CEEEEEEEEE-C----------
Confidence            35689999999 588999          9999999865    8899999999984   5789999852 2          


Q ss_pred             CeEEccCCeEEEecCCCCCCCCCCccccccCCCEeEEEEEEE
Q 030863          108 DVVKVPNGHCWVEGDNPSSSLDSRSFGPIPLGLVKGRVTHIL  149 (170)
Q Consensus       108 ~~~~vp~g~~~v~gDn~~~S~DSR~~G~V~~~~I~Gkv~~~~  149 (170)
                             |+.+++.+|+.  ++.....+-..-.|.|+|+.++
T Consensus        72 -------~~~~L~~~N~~--y~~i~i~~~~~~~I~GvVv~vi  104 (105)
T d1umua_          72 -------PTVQLIPMNSA--YSPITISSEDTLDVFGVVIHVV  104 (105)
T ss_dssp             -------SSCEEECSSTT--SCCEECCTTSCEEEEEEEEEEE
T ss_pred             -------CcEEEECCCCC--CCCEEcCCCCCEEEEEEEEEEE
Confidence                   35677888863  3444332222335999998876