Citrus Sinensis ID: 030880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Secondary Structure (PSIPRED)
ccccccccEEcEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccccccccHHHHHcccEEEEEEEccccHHHHcHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHcEEEEEEEEccccccHHHHHHHHHHcccccccccccccEEEEEEEEccccEEEEEEEEccccHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAPVSALAKYKLVflgdqsvgktSIITRFMydkfdntyqaTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIpsyirdssVAVVVYDVASrqsflntsKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Flexible Loop (DISEMBL)
MAPVSALAKYKlvflgdqsvgktSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSlipsyirdsSVAVVVYDVasrqsflntskwidevrtergsdviivlvgnktdlvekrqvsieegeaksrelNVMFIETsakagfniKVCLMLHPNTV
Low Complexity Region (SEG)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRdssvavvvydvasRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Disordered region (IsUnstruct)
*****ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV**********ELNVMFIETSAKAGFNIKVCLMLH****
Disordered Region (DISOPRED)
*****AL**YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Disordered Region (DISEMBL)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Disordered Region (DISPRO)
**PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
O80501	208	Ras-related protein RABH1	yes	no	0.941	0.769	0.962	3e-87
Q9LFT9	207	Ras-related protein RABH1	no	no	0.941	0.772	0.906	1e-80
Q9SID8	207	Ras-related protein RABH1	no	no	0.941	0.772	0.912	6e-80
Q9SMR4	214	Ras-related protein RABH1	no	no	0.941	0.747	0.857	1e-74
Q5RAV6	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	1e-73
P20340	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	1e-73
Q9WVB1	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	2e-73
P35279	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.839	2e-73
P34213	205	Ras-related protein Rab-6	yes	no	0.917	0.760	0.826	2e-73
Q1KME6	208	Ras-related protein Rab-6	yes	no	0.917	0.75	0.826	5e-73

>sp|O80501|RAH1B_ARATH Ras-related protein RABH1b OS=Arabidopsis thaliana GN=RABH1B PE=1 SV=1

 Score =  320 bits (820), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 159/160 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Binds GTP and GDP and possesses intrinsic GTPase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFT9|RAH1E_ARATH Ras-related protein RABH1e OS=Arabidopsis thaliana GN=RABH1E PE=2 SV=1

 Score =  298 bits (762), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 145/160 (90%), Positives = 154/160 (96%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVA+RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEEG+ K+R+  V+FIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIK 160

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SID8|RAH1D_ARATH Ras-related protein RABH1d OS=Arabidopsis thaliana GN=RABH1D PE=3 SV=1

 Score =  296 bits (757), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 146/160 (91%), Positives = 150/160 (93%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA+R SFLNTSKWI+EVR ER  DVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEG++K RE  VMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIK 160

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMR4|RAH1C_ARATH Ras-related protein RABH1c OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1

 Score =  278 bits (711), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/161 (85%), Positives = 147/161 (91%), Gaps = 1/161 (0%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVL 119
           QLWDTAGQERFRSLIPSYIRDSSVA+VVYDV++RQ+FLNTSKWI++V  ERG S+VIIVL
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           VGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK
Sbjct: 121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIK 161

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3

 Score =  275 bits (702), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Pongo abelii (taxid: 9601)

>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3

 Score =  275 bits (702), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER). Has a low GTPase activity.

Homo sapiens (taxid: 9606)

>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2

 Score =  274 bits (701), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Rattus norvegicus (taxid: 10116)

>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4

 Score =  274 bits (701), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 131/156 (83%), Positives = 146/156 (93%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Mus musculus (taxid: 10090)

>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1

 Score =  274 bits (701), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 144/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           +AL K+KLVFLG+QSVGKTSIITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 7   NALKKFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 66

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDSSVAVVVYD+ +  SF  T+KW+D+VR ERG DVIIVLVGNKT
Sbjct: 67  TAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKT 126

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS E+GE K+R+LNVMFIETSAKAG+N+K
Sbjct: 127 DLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVK 162

Protein transport. Probably involved in vesicular traffic.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3

 Score =  273 bits (697), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 129/156 (82%), Positives = 145/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIRDS+ AVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

Protein transport. Regulator of membrane traffic from the Golgi apparatus towards the endoplasmic reticulum (ER).

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
225427294	208	PREDICTED: ras-related protein RABH1b [V	0.941	0.769	0.981	7e-87
356497062	207	PREDICTED: ras-related protein RABH1b-li	0.941	0.772	0.968	6e-86
224126375	208	predicted protein [Populus trichocarpa]	0.941	0.769	0.968	6e-86
449461547	208	PREDICTED: ras-related protein RABH1b-li	0.947	0.774	0.962	6e-86
357482281	226	Ras-related protein Rab-6 [Medicago trun	0.947	0.712	0.956	1e-85
255571107	208	protein with unknown function [Ricinus c	0.941	0.769	0.968	1e-85
15224916	208	Ras-related protein RABH1B [Arabidopsis	0.941	0.769	0.962	1e-85
255575776	208	protein with unknown function [Ricinus c	0.941	0.769	0.962	1e-85
225453266	208	PREDICTED: ras-related protein RABH1b [V	0.941	0.769	0.962	2e-85
623586	208	putative [Nicotiana tabacum]	0.941	0.769	0.968	2e-85

>gi|225427294|ref|XP_002281823.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera] gi|147782540|emb|CAN75036.1| hypothetical protein VITISV_014840 [Vitis vinifera]

 Score =  324 bits (831), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 157/160 (98%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497062|ref|XP_003517383.1| PREDICTED: ras-related protein RABH1b-like [Glycine max]

 Score =  321 bits (823), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224126375|ref|XP_002329538.1| predicted protein [Populus trichocarpa] gi|222870247|gb|EEF07378.1| predicted protein [Populus trichocarpa]

 Score =  321 bits (823), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT+RL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTIRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+V+DVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIK 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461547|ref|XP_004148503.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus] gi|449528471|ref|XP_004171228.1| PREDICTED: ras-related protein RABH1b-like [Cucumis sativus]

 Score =  321 bits (823), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 155/161 (96%), Positives = 159/161 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAP SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPTSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161
           GNKTDLVEKRQVSIEEGEAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARELNVMFIETSAKAGFNIKA 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482281|ref|XP_003611426.1| Ras-related protein Rab-6 [Medicago truncatula] gi|355512761|gb|AES94384.1| Ras-related protein Rab-6 [Medicago truncatula]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/161 (95%), Positives = 160/161 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQ+FLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQTFLNTTKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161
           GNKTDLVEKRQVSIE+GEAK+RELNVMFIETSAKAGFNIK 
Sbjct: 121 GNKTDLVEKRQVSIEDGEAKARELNVMFIETSAKAGFNIKA 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571107|ref|XP_002526504.1| protein with unknown function [Ricinus communis] gi|223534179|gb|EEF35895.1| protein with unknown function [Ricinus communis]

 Score =  320 bits (821), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIK 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224916|ref|NP_181989.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|297828175|ref|XP_002881970.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|75318653|sp|O80501.1|RAH1B_ARATH RecName: Full=Ras-related protein RABH1b; Short=AtRABH1b; AltName: Full=Ras-related protein Rab6A; Short=AtRab6A gi|3341681|gb|AAC27463.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|21593488|gb|AAM65455.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|107738267|gb|ABF83670.1| At2g44610 [Arabidopsis thaliana] gi|110742258|dbj|BAE99055.1| putative small GTP-binding protein [Arabidopsis thaliana] gi|297327809|gb|EFH58229.1| hypothetical protein ARALYDRAFT_903887 [Arabidopsis lyrata subsp. lyrata] gi|330255353|gb|AEC10447.1| Ras-related protein RABH1B [Arabidopsis thaliana] gi|741994|prf||2008312A GTP-binding protein

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 159/160 (99%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575776|ref|XP_002528787.1| protein with unknown function [Ricinus communis] gi|223531790|gb|EEF33609.1| protein with unknown function [Ricinus communis]

 Score =  320 bits (820), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+V+DVASRQ+FLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVFDVASRQTFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEGEAKARDLNVMFIETSAKAGFNIK 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453266|ref|XP_002266653.1| PREDICTED: ras-related protein RABH1b [Vitis vinifera]

 Score =  320 bits (819), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/160 (96%), Positives = 160/160 (100%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNT+KWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTAKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLV+KRQVSIEEGEAK+R+LNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVDKRQVSIEEGEAKARDLNVMFIETSAKAGFNIK 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|623586|gb|AAA74117.1| putative [Nicotiana tabacum]

 Score =  319 bits (818), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/160 (96%), Positives = 158/160 (98%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV L
Sbjct: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVAL 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           QLWDTAGQERFRSLIPSYIRDSSVAV+VYDVASRQSFLNTSKWI+EVRTERGSDVIIVLV
Sbjct: 61  QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTSKWIEEVRTERGSDVIIVLV 120

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNKTDLVEKRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct: 121 GNKTDLVEKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2042321	208	RAB6A [Arabidopsis thaliana (t	0.941	0.769	0.887	2.6e-70
TAIR|locus:2145392	207	RABH1e "RAB GTPase homolog H1E	0.941	0.772	0.837	1.2e-65
TAIR|locus:2060415	207	RABH1d "RAB GTPase homolog H1D	0.941	0.772	0.837	6.7e-65
TAIR|locus:2140045	214	RABH1c "RAB GTPase homolog H1C	0.941	0.747	0.795	5.5e-61
UNIPROTKB|F1N8I9	175	RAB6A "Ras-related protein Rab	0.905	0.88	0.792	7.1e-61
UNIPROTKB|Q1KME6	208	RAB6A "Ras-related protein Rab	0.905	0.740	0.785	7.1e-61
UNIPROTKB|F1MBF6	208	RAB6A "Uncharacterized protein	0.905	0.740	0.785	7.1e-61
UNIPROTKB|H7BYW1	174	RAB6A "Ras-related protein Rab	0.905	0.885	0.792	7.1e-61
UNIPROTKB|P20340	208	RAB6A "Ras-related protein Rab	0.905	0.740	0.792	7.1e-61
UNIPROTKB|F1SUT0	208	RAB6A "Uncharacterized protein	0.905	0.740	0.785	7.1e-61

TAIR|locus:2042321 RAB6A [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 142/160 (88%), Positives = 146/160 (91%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             RQSFLNT+KWIDEVRTERGSDVI+VLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVASRQSFLNTTKWIDEVRTERGSDVIVVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLV+KRQVSIEE EAK+RELNVMFIETSAKAGFNIK
Sbjct:   121 GNKTDLVDKRQVSIEEAEAKARELNVMFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS;IDA

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0032940 "secretion by cell" evidence=IGI

TAIR|locus:2145392 RABH1e "RAB GTPase homolog H1E" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 134/160 (83%), Positives = 141/160 (88%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             RQSFLNTSKWI++VRTERGSDVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVIVYDVANRQSFLNTSKWIEDVRTERGSDVIIVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLV+KRQVSIEEG+ K+R+  V+FIETSAKAGFNIK
Sbjct:   121 GNKTDLVDKRQVSIEEGDNKARDYGVIFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2060415 RABH1d "RAB GTPase homolog H1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
 Identities = 134/160 (83%), Positives = 137/160 (85%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAKYKLVFLGDQSVGKTSIITRFMYDKFD TYQATIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDTTYQATIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
             QLWDTAGQERFRSLIPSYIR             R SFLNTSKWI+EVR ER  DVIIVLV
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVANRLSFLNTSKWIEEVRNERAGDVIIVLV 120

Query:   121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             GNKTDLVEKRQVSIEEG++K RE  VMFIETSAKAGFNIK
Sbjct:   121 GNKTDLVEKRQVSIEEGDSKGREYGVMFIETSAKAGFNIK 160

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2140045 RABH1c "RAB GTPase homolog H1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 128/161 (79%), Positives = 134/161 (83%)

Query:     1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
             MA VS LAK+KLVFLGDQSVGKTSIITRFMYDKFD TYQ TIGIDFLSKTMYLEDRTVRL
Sbjct:     1 MASVSPLAKFKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRL 60

Query:    61 QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVL 119
             QLWDTAGQERFRSLIPSYIR             RQ+FLNTSKWI++V  ERG S+VIIVL
Sbjct:    61 QLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVL 120

Query:   120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             VGNKTDLVEKRQVSI EGE K +E  VMFIETSAK  FNIK
Sbjct:   121 VGNKTDLVEKRQVSISEGEDKGKEYGVMFIETSAKENFNIK 161

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|F1N8I9 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/154 (79%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q1KME6 RAB6A "Ras-related protein Rab-6A" [Gallus gallus (taxid:9031)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000042 "protein targeting to Golgi" evidence=ISS

UNIPROTKB|F1MBF6 RAB6A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|H7BYW1 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/154 (79%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:     3 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 62

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    63 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 122

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   123 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 156

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|P20340 RAB6A "Ras-related protein Rab-6A" [Homo sapiens (taxid:9606)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 122/154 (79%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000042 "protein targeting to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0018125 "peptidyl-cysteine methylation" evidence=IDA

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0034067 "protein localization to Golgi apparatus" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0072385 "minus-end-directed organelle transport along microtubule" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|F1SUT0 RAB6A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 121/154 (78%), Positives = 133/154 (86%)

Query:     7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
             L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTA
Sbjct:    11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70

Query:    67 GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             GQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL
Sbjct:    71 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130

Query:   127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct:   131 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1KME6	RAB6A_CHICK	No assigned EC number	0.8269	0.9176	0.75	yes	no
P34213	RAB6A_CAEEL	No assigned EC number	0.8269	0.9176	0.7609	yes	no
P35279	RAB6A_MOUSE	No assigned EC number	0.8397	0.9176	0.75	yes	no
Q9SID8	RAH1D_ARATH	No assigned EC number	0.9125	0.9411	0.7729	no	no
O80501	RAH1B_ARATH	No assigned EC number	0.9625	0.9411	0.7692	yes	no
Q55FK2	RAB6_DICDI	No assigned EC number	0.8152	0.9235	0.7548	yes	no
Q5RAV6	RAB6A_PONAB	No assigned EC number	0.8397	0.9176	0.75	yes	no
P17608	RYH1_SCHPO	No assigned EC number	0.7884	0.9176	0.7761	yes	no
Q9WVB1	RAB6A_RAT	No assigned EC number	0.8397	0.9176	0.75	yes	no
Q99260	YPT6_YEAST	No assigned EC number	0.6708	0.9176	0.7255	yes	no
P20340	RAB6A_HUMAN	No assigned EC number	0.8397	0.9176	0.75	yes	no
Q9LFT9	RAH1E_ARATH	No assigned EC number	0.9062	0.9411	0.7729	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00015815001 SubName- Full=Putative uncharacterized protein (Chromosome chr2 scaffold_11, whole genome shotgun sequence); (208 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-108
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	4e-79
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-78
pfam00071	162	pfam00071, Ras, Ras family	2e-74
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-66
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-64
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	9e-58
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	4e-55
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	1e-54
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	3e-54
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	6e-52
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	1e-49
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	8e-49
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	3e-47
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-46
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-44
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-43
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-42
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-42
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	2e-41
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	4e-41
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-41
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	1e-40
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-40
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	8e-40
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	1e-39
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-39
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-39
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	5e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-38
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	4e-38
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-35
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	5e-35
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	9e-35
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	4e-34
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	6e-34
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-33
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-32
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-32
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	4e-32
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	6e-32
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-31
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-30
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	4e-30
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-29
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-28
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-28
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	7e-28
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	9e-28
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	9e-28
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	9e-26
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	9e-26
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-25
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	5e-25
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	9e-25
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-24
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-24
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-24
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-24
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-23
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	2e-23
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	7e-23
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-23
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-21
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	2e-21
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	2e-21
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-21
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-21
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-21
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	7e-21
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-20
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-20
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-19
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	5e-19
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-18
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-18
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	8e-17
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	9e-17
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	4e-15
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-14
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-14
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	3e-13
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	9e-13
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	4e-12
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	2e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-11
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-10
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-08
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	5e-08
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	9e-08
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	1e-07
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	3e-07
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-07
cd00879	191	cd00879, Sar1, Sar1 is an essential component of C	5e-07
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	9e-05
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	3e-04
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	6e-04
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	6e-04
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	6e-04
cd04102	204	cd04102, RabL3, Rab GTPase-like family 3 (Rab-like	7e-04
cd04105	202	cd04105, SR_beta, Signal recognition particle rece	0.001
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	0.003
cd04154	173	cd04154, Arl2, Arf-like 2 (Arl2) GTPase	0.003
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	0.004
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	0.004

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  306 bits (786), Expect = e-108
 Identities = 127/151 (84%), Positives = 139/151 (92%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLGDQSVGKTSIITRFMYD FDN YQATIGIDFLSKTMY++D+TVRLQLWDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRSLIPSYIRDSSVAVVVYD+ +RQSF NT KWID+VR ERG+DVIIVLVGNKTDL +K
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS EEGE K++E N MFIETSAKAG N+K
Sbjct: 121 RQVSTEEGEKKAKENNAMFIETSAKAGHNVK 151

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  231 bits (592), Expect = 4e-79
 Identities = 73/151 (48%), Positives = 109/151 (72%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S+++RF   KF   Y++TIG+DF +KT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R +  A++VYD+ +R+SF N   W+ E+R     +V+I+LVGNK+DL E+
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS EE EA + E  + F ETSAK   N++
Sbjct: 121 RQVSREEAEAFAEEHGLPFFETSAKTNTNVE 151

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  229 bits (587), Expect = 3e-78
 Identities = 74/151 (49%), Positives = 112/151 (74%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGKTS++ RF+ +KF   Y++TIG+DF SKT+ ++ + V+LQ+WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R +  A++VYDV +R+SF N  KW++E++     ++ I+LVGNK+DL ++
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS EE +  ++E  ++F ETSAK G N+ 
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVD 151

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  220 bits (562), Expect = 2e-74
 Identities = 77/150 (51%), Positives = 107/150 (71%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD  VGK+S++ RF  +KF   Y  TIG+DF +KT+ ++ +TV+LQ+WDTAGQER
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR+L P Y R +   ++VYD+ SR SF N  KW++E+      +V IVLVGNK DL ++R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            VS EEGEA ++EL + F+ETSAK   N++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVE 150

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  198 bits (505), Expect = 7e-66
 Identities = 72/152 (47%), Positives = 106/152 (69%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV LGD SVGK+SI+ RF+ ++F    ++TIG  FL++T+ L+D TV+ ++WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+RSL P Y R ++ A+VVYD+ S +SF     W+ E++     +++I L GNK DL  
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVS EE +  + E  ++F+ETSAK G N+ 
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVN 152

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  195 bits (497), Expect = 1e-64
 Identities = 95/132 (71%), Positives = 111/132 (84%)

Query: 30  MYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 89
           MYD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQERFRSLIPSYIRDS+ A+VVY
Sbjct: 1   MYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVY 60

Query: 90  DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI 149
           D+ +RQSF NT+KWI ++  ERG DVII LVGNKTDL + R+V+ EEG  K++E N MF 
Sbjct: 61  DITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFH 120

Query: 150 ETSAKAGFNIKV 161
           ETSAKAG NIKV
Sbjct: 121 ETSAKAGHNIKV 132

Length = 176

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  177 bits (451), Expect = 9e-58
 Identities = 61/150 (40%), Positives = 95/150 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R++ +KF+  +++T    F  KT+ +  + + L +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+ +L P Y RD+  A++VYD+    SF    KWI E++  RG+++ +V+VGNK DL  +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R VS  E E  ++ +     ETSAK G  I
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  171 bits (435), Expect = 4e-55
 Identities = 59/150 (39%), Positives = 106/150 (70%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ ++ +T++ Q+WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+  + +F N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R V  EE +A + +  + FIETSA  G N+
Sbjct: 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNV 153

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  169 bits (430), Expect = 1e-54
 Identities = 67/154 (43%), Positives = 100/154 (64%), Gaps = 2/154 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+S++ RF  D FD    +TIG+DF  KT+ ++ + V+L +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVE 128
           RFR+L  SY R +   ++VYDV  R +F N   W++E+ T     D + +LVGNK D  E
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDK-E 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162
            R+V+ EEG+  +R+ N++FIETSAK    ++  
Sbjct: 120 NREVTREEGQKFARKHNMLFIETSAKTRIGVQQA 153

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  168 bits (429), Expect = 3e-54
 Identities = 69/150 (46%), Positives = 101/150 (67%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D F+ ++ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   ++VYD+   +SF N   W+  +      DV  +LVGNK D+ EK
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R VS EEGEA +RE  + F+ETSAKA  N+
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINV 153

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  162 bits (413), Expect = 6e-52
 Identities = 65/155 (41%), Positives = 101/155 (65%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +TV+LQ+WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   ++VYDV  ++SF N  +W+ E+      +V  +LVGNK DL +K
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V   E +  + EL + F+ETSAK   N++   M
Sbjct: 123 KVVDYTEAKEFADELGIPFLETSAKNATNVEEAFM 157

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  157 bits (398), Expect = 1e-49
 Identities = 60/150 (40%), Positives = 100/150 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  ++V+LQ+WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+SF   + W+ + RT    D++I+LVGNK DL + 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTDARTLASPDIVIILVGNKKDLEDD 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           R+V+  E    ++E  ++F+ETSA  G N+
Sbjct: 121 REVTFLEASRFAQENGLLFLETSALTGENV 150

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  154 bits (392), Expect = 8e-49
 Identities = 63/157 (40%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT ++ RF    F      TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++ YD+  R SF +   WI+EV     S+V+++L+GNK DL E+
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIKVCLML 165
           R+V  EE    +    ++  +ETSAK   N++   +L
Sbjct: 124 REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLL 160

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  151 bits (383), Expect = 3e-47
 Identities = 60/155 (38%), Positives = 106/155 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S++ I+L+GNK DL  +
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESR 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           R+VS EEGEA +RE  ++F+ETSAK   N++   +
Sbjct: 125 REVSYEEGEAFAREHGLIFMETSAKTASNVEEAFI 159

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  149 bits (378), Expect = 1e-46
 Identities = 61/150 (40%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG   VGK+++  RF+  +F   Y  TI  D   K + ++  T  L + DTAGQE 
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIE-DSYRKQIVVDGETYTLDILDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK 129
           F ++   YIR+    ++VY + SR+SF       +++   +  + + IVLVGNK DL  +
Sbjct: 60  FSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENE 119

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           RQVS EEGEA + E    F+ETSAK   NI
Sbjct: 120 RQVSTEEGEALAEEWGCPFLETSAKTNINI 149

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  144 bits (365), Expect = 2e-44
 Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 7/156 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V LQ+WDTAGQE
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDRLVTLQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR----TERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+VYDV + +SF +   W DE           +   V++GNK D
Sbjct: 61  RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVLGNKID 120

Query: 126 LVEKRQVSIEEGEA--KSRELNVMFIETSAKAGFNI 159
           L EKRQVS ++ +   KS+  N+ + ETSAK   N+
Sbjct: 121 LEEKRQVSTKKAQQWCKSKG-NIPYFETSAKEAINV 155

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  143 bits (361), Expect = 1e-43
 Identities = 65/153 (42%), Positives = 102/153 (66%), Gaps = 1/153 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   ++ AT+GI F +K + ++   V+LQ+WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+     SDV+I+L+GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV 161
           +R V  E+GE  ++E  V F+ETSAK G N+++
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVEL 153

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  140 bits (355), Expect = 2e-42
 Identities = 62/153 (40%), Positives = 104/153 (67%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 67
           +++L+ +GD +VGK+S++ RF   +F      T+G+DF S+ + +E    ++LQLWDTAG
Sbjct: 2   QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAG 61

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL 126
           QERFRS+  SY R+S   ++V+D+ +R+SF +   W++E R+  +    + +LVG+K DL
Sbjct: 62  QERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDL 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             +RQV+ EE E  +++L + +IETSA+ G N+
Sbjct: 122 ESQRQVTREEAEKLAKDLGMKYIETSARTGDNV 154

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  139 bits (351), Expect = 7e-42
 Identities = 60/151 (39%), Positives = 107/151 (70%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+  RQ+F N  +W+ E+R    S+++I++ GNK+DL   
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ E+G+A + +  + F+ETSA    N++
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVE 163

Length = 216

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  137 bits (347), Expect = 2e-41
 Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 7/157 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQ 68
           +K++ +GD  VGKTSII R+++  F   Y+ATIG+DF  K +  +  T VRLQLWD AGQ
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---ID-EVRTERGSDVIIVLVGNKT 124
           ERF  +   Y + +  A++V+DV    +F    KW   +D +V    G  +  +L+ NK 
Sbjct: 61  ERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANKC 120

Query: 125 DLVEKR-QVSIEEGEAKSRELN-VMFIETSAKAGFNI 159
           DL ++R     E+ +   +E   + + ETSAK   NI
Sbjct: 121 DLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINI 157

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  136 bits (345), Expect = 4e-41
 Identities = 56/151 (37%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++++ ++LQ+WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    +++ I+L+GNK DL  +
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS EEGE  ++E  ++F+E SAK   N++
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVE 157

Length = 210

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  135 bits (341), Expect = 4e-41
 Identities = 55/151 (36%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I L+GNK DL  +
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVE 153

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  133 bits (337), Expect = 1e-40
 Identities = 59/151 (39%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   + +L   F E SAK   N+K
Sbjct: 122 RVVSAERGRQLADQLGFEFFEASAKENINVK 152

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  134 bits (339), Expect = 3e-40
 Identities = 65/169 (38%), Positives = 95/169 (56%), Gaps = 16/169 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K+V LGD  VGKT+++ R + D+F   Y  TIG    +KT+    R ++LQLWDTAGQ
Sbjct: 5   EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +RSL P Y R ++  ++VYD   R+S    T +W++E+R     DV I+LVGNK DL 
Sbjct: 65  EEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLF 124

Query: 128 EKRQVSIEEGEAKSREL---------------NVMFIETSAKAGFNIKV 161
           +++  S E     +RE+               N   +ETSAK+     V
Sbjct: 125 DEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNV 173

Length = 219

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  132 bits (333), Expect = 8e-40
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ ++   ++LQ+WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI +LVGNK DL E+
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVE 158

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  132 bits (333), Expect = 1e-39
 Identities = 61/161 (37%), Positives = 95/161 (59%), Gaps = 11/161 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT----------VRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QLWDTAGQERFRSL  ++ RD+   ++++D+ S QSFLN   W+ +++     +   IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+VS  +    + +  + + ETSA  G N++
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVE 166

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  131 bits (332), Expect = 1e-39
 Identities = 59/151 (39%), Positives = 86/151 (56%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY +  RQSF    K+ +++ R +   DV IVLVGNK DL  
Sbjct: 60  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R VS EEG+  +R+    F+ETSAK   N+
Sbjct: 120 ERVVSTEEGKELARQWGCPFLETSAKERVNV 150

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  131 bits (331), Expect = 2e-39
 Identities = 59/151 (39%), Positives = 87/151 (57%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++     L + DTAGQE
Sbjct: 3   YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY +  RQSF   +K+ +++ R +   DV IVLVGNK DL  
Sbjct: 62  EFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLVGNKCDLEN 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R VS EEG+  +R+    F+ETSAK   N+
Sbjct: 122 ERVVSTEEGKELARQWGCPFLETSAKERINV 152

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  131 bits (330), Expect = 5e-39
 Identities = 62/162 (38%), Positives = 98/162 (60%), Gaps = 3/162 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVE 128
           RFR++  +Y R +   +VVYDV + +SF+N  +W+ E+  E+  D +  VLVGNK D  E
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEI--EQNCDDVCKVLVGNKNDDPE 124

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV 170
           ++ V  E+    + ++ +   ETSAK   N++         V
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELV 166

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  129 bits (325), Expect = 1e-38
 Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 3/151 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQ 68
           K++ +G+ +VGK+S+I RF+   F   Y+ TIG+DFL K ++L      VRL LWDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E F ++  +Y R +   ++V+    R+SF     W ++V  E G D+ +VLV  K DL++
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-DIPMVLVQTKIDLLD 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +  ++ EE EA ++ L +    TS K  FN+
Sbjct: 121 QAVITNEEAEALAKRLQLPLFRTSVKDDFNV 151

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  127 bits (322), Expect = 4e-38
 Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 2/148 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F    +ATIG+DF  +T+ ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  RFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYDV +  SF +   WI+E       ++V  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKA 155
           E+ QV  +  +  +   ++   ETSAK 
Sbjct: 123 EQIQVPTDLAQRFADAHSMPLFETSAKD 150

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  120 bits (301), Expect = 4e-35
 Identities = 59/151 (39%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           ++L+ +GD  VGKT ++ RF  ++F +++ +TIG+DF  KT+ ++   VR+Q+WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R++++   Y R +    +VYD++S +S+ +  KW+ +V       V  +L+GNK D  +K
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQV  E+G   ++E  + F ETSA    NIK
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIK 151

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score =  119 bits (301), Expect = 5e-35
 Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V LQ+WDTAGQER
Sbjct: 7   KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER 66

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           FRSL   + R S   ++ + V   QSF N S W  E       +       V++GNK D 
Sbjct: 67  FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID- 125

Query: 127 VEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           + +RQVS EE +A  R+     + ETSAK   N+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 159

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score =  120 bits (302), Expect = 9e-35
 Identities = 57/154 (37%), Positives = 88/154 (57%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           K+V LG +SVGKTS++ R+++ +F    YQ TIG  F++K M + +R V L +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+ ++   Y R +  A+V YD+    SF     W+ E++        I L G K+DL+E+
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQ 120

Query: 130 ----RQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
               RQV   + +  + E+     ETS+K G N+
Sbjct: 121 DRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNV 154

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score =  117 bits (296), Expect = 4e-34
 Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 17/164 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FRSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           +  L P SY   + V ++ + V S  SF N  +KW  E++     +V I+LVG K DL +
Sbjct: 61  YDRLRPLSY-PQTDVFLLCFSVDSPSSFENVKTKWYPEIK-HYCPNVPIILVGTKIDLRD 118

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                      ++ ++ EEGE  ++E+  V ++E SA     +K
Sbjct: 119 DGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLK 162

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  118 bits (297), Expect = 6e-34
 Identities = 62/156 (39%), Positives = 95/156 (60%), Gaps = 3/156 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD  VGK+S++  F+    ++    TIG+DF  K + +  + ++L +WDTAGQE
Sbjct: 15  FKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKRLKLTIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRT-ERGSDVIIVLVGNKTDLV 127
           RFR+L  SY R++   ++VYDV  R++F N S  W  EV       D + +LVGNK D  
Sbjct: 74  RFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE 133

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
            +R VS EEG A ++E   +F+E SAK   N++ C 
Sbjct: 134 SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF 169

Length = 211

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score =  117 bits (296), Expect = 1e-33
 Identities = 60/157 (38%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K+V LGD + GKTS+I RF  + F  +Y+ TIG+DF S+ + L     V LQ+WD  GQ
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLDFFSRRITLPGSLNVTLQVWDIGGQ 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
           +    ++  YI  +    +VYD+ + QSF N   W   + +V  E  +   +VLVGNKTD
Sbjct: 61  QIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLVGNKTD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162
           L   RQV+ E+    ++E ++  I  SAK G  + +C
Sbjct: 121 LEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLC 157

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  113 bits (285), Expect = 3e-32
 Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQER
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F S+  +Y R +   ++VYD+  +++F +  KW+  +      D  ++LVGNK D    R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 131 QVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           +++ ++GE  ++++  M F E SAK  FN+
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNV 151

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  113 bits (284), Expect = 4e-32
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 4/153 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD  VGKT++  +   + F  TY  TI  D   K + ++ +   L++ DTAGQE 
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIE-DSYRKQVVVDGQPCMLEVLDTAGQEE 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLV 127
           + +L   +IR+    ++VY + SR +F    ++   I  V+ E  +DV I++VGNK D V
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R+VS EEG A +R L   FIE SAK   N++
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVE 152

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  112 bits (282), Expect = 4e-32
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 5/155 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +G+  VGK+ II R+   +F + Y  TIGID+  K + + ++ VR+  +D +G   
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-----DVIIVLVGNKTD 125
           +  +   + +D+   ++VYDV  RQSF     W+ E++ E G      ++++V+  NK D
Sbjct: 62  YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L + R VS +EG   +      + ETSA  G  + 
Sbjct: 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVN 156

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  112 bits (282), Expect = 6e-32
 Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 1/149 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K + +GD  VGK  I+        ++ Y   +GID+ + T+ L+ R V+LQLWDT+GQ R
Sbjct: 8   KFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  SY R +   ++VYD+ +R SF    +WI E+  E    V  +LVGN+  L  KR
Sbjct: 68  FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEI-DEHAPGVPKILVGNRLHLAFKR 126

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           QV+ E+ +A +    + F E S    FNI
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNI 155

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score =  110 bits (276), Expect = 3e-31
 Identities = 58/153 (37%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD SVGKT +I RF  D FD  Y+ATIG+DF  +   +      LQLWDTAGQER
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEK 129
           F+ +  +Y R +   ++V+D+    S  +T +W+ D ++    S V++ LVG K DL   
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121

Query: 130 RQVSIEEGEA--KSRELNVMFIETSAKAGFNIK 160
            Q ++ E +A   +RE+   +   SA  G N++
Sbjct: 122 AQYALMEQDAIKLAREMKAEYWAVSALTGENVR 154

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score =  107 bits (270), Expect = 3e-30
 Identities = 57/155 (36%), Positives = 87/155 (56%), Gaps = 5/155 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTA 66
           +   +GD +VGK++++  F  D   F   Y  T G D + KT+ + D   +V L ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
           GQE F  ++ +     +V  VVYDV +  SF N S+WI+ VRT   G     VLVGNK D
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCD 121

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L ++R+V   + +A ++   + F ETSAK G   +
Sbjct: 122 LTDRREVDAAQAQALAQANTLKFYETSAKEGVGYE 156

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score =  107 bits (269), Expect = 4e-30
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 18/164 (10%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           LV +GD +VGKT ++  +  + F   Y  T+  +  S  + ++ + V L LWDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  RSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
             L P SY  D+ V ++ + V S  SF N   KW  EV+     +V I+LVG K DL   
Sbjct: 60  DRLRPLSY-PDTDVFLICFSVDSPASFENVKEKWYPEVK-HFCPNVPIILVGTKLDLRND 117

Query: 127 -------VEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                   +K+Q  V+ E+G+A ++ +  V ++E SA     ++
Sbjct: 118 KSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVR 161

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  105 bits (263), Expect = 3e-29
 Identities = 56/153 (36%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             YKLV +G   VGK+++  +F+   F   Y  TI  D  +K   ++ +  RL + DTAG
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWARLDILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
           QE F ++   Y+R     ++V+ V  R SF    K+  ++ R +   +  ++LVGNK DL
Sbjct: 60  QEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADL 119

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             +RQVS EEG+  +R+L + +IETSAK   N+
Sbjct: 120 EHQRQVSREEGQELARQLKIPYIETSAKDRVNV 152

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score =  103 bits (258), Expect = 1e-28
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 1   EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           E+F S+   YI++    +VVY + ++Q+F +     D+ VR +    V I+LVGNK DL 
Sbjct: 60  EQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
            +R+VS  EG A + E    F+ETSAK+   +     
Sbjct: 120 SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFA 156

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  102 bits (256), Expect = 3e-28
 Identities = 51/151 (33%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V+L + DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            + ++  +Y R     ++V+ +   +SF   +++ +++ R +   +V ++LVGNK DL +
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           KRQVS+EE    + +  V ++ETSAK   N+
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANV 150

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score =  101 bits (255), Expect = 7e-28
 Identities = 56/152 (36%), Positives = 87/152 (57%), Gaps = 4/152 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+   F  +Y  TI   F SK +  + +   L++ DTAGQ+ 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIITYKGQEYHLEIVDTAGQDE 61

Query: 71  FRSLIP-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128
           + S++P  Y       ++VY V SR+SF       D++    G + + IVLVGNK+DL  
Sbjct: 62  Y-SILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHM 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +RQVS EEG+  +      F+E+SAK   N++
Sbjct: 121 ERQVSAEEGKKLAESWGAAFLESSAKENENVE 152

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  102 bits (257), Expect = 9e-28
 Identities = 54/163 (33%), Positives = 88/163 (53%), Gaps = 13/163 (7%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M  +  + ++KL+ +GD  VGKT+ + R +  +F+  Y  T+G++      Y     +  
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVL 119
            +WDTAGQE+F  L   Y      A++++DV SR ++ N   W  D VR     ++ IVL
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVL 118

Query: 120 VGNKTDLVEKRQVSIEEGEAKS----RELNVMFIETSAKAGFN 158
           VGNK D V+ RQV     +A+     R+ N+ + + SAK+ +N
Sbjct: 119 VGNKVD-VKDRQV-----KARQITFHRKKNLQYYDISAKSNYN 155

Length = 215

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score =  101 bits (253), Expect = 9e-28
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 8/161 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG   VGK+++  RF+  +F   Y+  +     S+ + ++   V L++ DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLE-SLYSRQVTIDGEQVSLEIQDTPGQQQ 59

Query: 71  F--RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
                 +   +R +   V+VY +  R SF   S+    I E++  R  ++ ++LVGNK D
Sbjct: 60  NEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQLIREIKK-RDGEIPVILVGNKAD 118

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166
           L+  RQVS EEG+  + EL  +F E SA   +  +V  + H
Sbjct: 119 LLHSRQVSTEEGQKLALELGCLFFEVSAAENYL-EVQNVFH 158

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 96.1 bits (239), Expect = 9e-26
 Identities = 55/152 (36%), Positives = 91/152 (59%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE-DSYRKQIEVDCQQCMLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
           +F ++   YI++     +VY + ++QSF +     +++ R +   DV ++LVGNK DL +
Sbjct: 61  QFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 129 KRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
           +R VS EEG+  +R+  N  F+ETSAK+  N+
Sbjct: 121 ERVVSKEEGQNLARQWGNCPFLETSAKSKINV 152

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 97.0 bits (242), Expect = 9e-26
 Identities = 56/169 (33%), Positives = 80/169 (47%), Gaps = 23/169 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---RTVRLQLWDT 65
           K K+V +GD   GKT ++  +    F   Y  T+   F +    L+    + + L LWDT
Sbjct: 3   KVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV---FENYVTTLQVPNGKIIELALWDT 59

Query: 66  AGQERFRSLIP-SYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           AGQE +  L P SY  D  V ++ Y V +  S  N   KW  EV         IVLVG K
Sbjct: 60  AGQEDYDRLRPLSY-PDVDVILICYSVDNPTSLDNVEDKWYPEV-NHFCPGTPIVLVGLK 117

Query: 124 TDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNI 159
           TDL + +             V+ E+GE+ ++ +  V +IE SAK   N+
Sbjct: 118 TDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENV 166

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 96.5 bits (240), Expect = 1e-25
 Identities = 54/159 (33%), Positives = 88/159 (55%), Gaps = 2/159 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  +YKLV +G   VGK+++  +F+ + F + Y  TI  D   K   +++ T  L + DT
Sbjct: 2   ASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIE-DSYRKQCVIDEETCLLDILDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R     + VY + SR SF   + + +++ R +    V ++LVGNK 
Sbjct: 61  AGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKC 120

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           DL  +RQVS  EG+  ++   + F+ETSAK   N+    
Sbjct: 121 DLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAF 159

Length = 189

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 94.9 bits (236), Expect = 3e-25
 Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 2/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 1   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGT 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++    V+VY + ++ +F +     +++ R +   DV ++LVGNK DL 
Sbjct: 60  EQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           ++R V  E+G+  +R+    F+ETSAKA  N+
Sbjct: 120 DERVVGKEQGQNLARQWGCAFLETSAKAKINV 151

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 94.1 bits (234), Expect = 5e-25
 Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)

Query: 13  VFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           V +G   VGK+S++   +  +     +    T   D       L+   V+L L DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDV--YVKELDKGKVKLVLVDTPGLD 58

Query: 70  RF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
            F       L    +R + + ++V D   R+S  +    I   R  R   + I+LVGNK 
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLIL--RRLRKEGIPIILVGNKI 116

Query: 125 DLVEKRQVS-IEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL+E+R+V  +   E  ++ L V   E SAK G  + 
Sbjct: 117 DLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVD 153

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 95.2 bits (237), Expect = 9e-25
 Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LGD  VGK+S+   F    ++++     G D   +T+ ++     L ++D   QE
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVVYDHWEQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVE 128
               L  S ++     V+VY V  R SF   S+   ++R  R + D+ I+LVGNK+DLV 
Sbjct: 61  DGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVR 120

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N+ 
Sbjct: 121 SREVSVQEGRACAVVFDCKFIETSAALQHNVD 152

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 93.4 bits (232), Expect = 1e-24
 Identities = 54/151 (35%), Positives = 81/151 (53%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+   F + +  TI  D       +++    L + DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKTQARIDNEPALLDILDTAGQA 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++ Y V  R SF   S++ + + R     D+ +VLVGNK DL +
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQ 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +RQV+ EEG   +RE N  F ETSA   F I
Sbjct: 122 QRQVTTEEGRNLAREFNCPFFETSAALRFYI 152

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 92.1 bits (229), Expect = 3e-24
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 3/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 1   EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R     + V+ + SR+SF +   + +++ R +   DV +VLVGNK DL 
Sbjct: 60  EEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDL- 118

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             R VS  +G+  ++   + +IETSAK    +
Sbjct: 119 AARTVSTRQGQDLAKSYGIPYIETSAKTRQGV 150

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 93.8 bits (233), Expect = 3e-24
 Identities = 56/185 (30%), Positives = 88/185 (47%), Gaps = 40/185 (21%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQE 69
           K+V LGD +VGKTS++ R+M  +F +T  +T+G  F     YL+      + +WDTAG+E
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGGAF-----YLKQWGPYNISIWDTAGRE 55

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +F  L   Y R ++  ++ YDV++ QS          +      D +  +VGNK DL E 
Sbjct: 56  QFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEE 115

Query: 129 ------------------KRQVSIEEGEAKSRELN--------------VMFIETSAKAG 156
                             +RQV++E+ +A  + +N               M  ETSAK G
Sbjct: 116 GALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTG 175

Query: 157 FNIKV 161
           +N+  
Sbjct: 176 YNVDE 180

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 91.8 bits (228), Expect = 4e-24
 Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 4/149 (2%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD +VGK+ ++ RF+ D ++    +T  +         E +T+ +  WDTAGQER
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F+++  SY   +   ++V+DV  + ++ N SKW +E+R  R  ++  ++V NK DL +  
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDL-DPS 119

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
               +   A+   L + +   SA  G N+
Sbjct: 120 VTQKKFNFAEKHNLPLYY--VSAADGTNV 146

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 90.2 bits (224), Expect = 2e-23
 Identities = 53/164 (32%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS+I  +  + +   Y  T   D  S  + ++ + VRLQL DTAGQ+ 
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           F  L P    D+ V ++ + V +  SF N + KWI E+R        I+LVG + DL   
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK-HNPKAPIILVGTQADLRTD 119

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                      ++ VS    +A + ++    +IE SA    N+K
Sbjct: 120 VNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLK 163

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 91.4 bits (227), Expect = 2e-23
 Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 13/154 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVE 128
           +F  L   Y      A++++DV +R ++ N   W  ++   R  + I IVL GNK D V+
Sbjct: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNKVD-VK 130

Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFN 158
            RQV     +AK     R+ N+ + E SAK+ +N
Sbjct: 131 NRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159

Length = 219

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 88.9 bits (221), Expect = 7e-23
 Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 5/150 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +F  L   Y      A++++DV SR ++ N   W  ++      ++ IVL GNK D+ ++
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 119

Query: 130 RQVSIEEGEAKS-RELNVMFIETSAKAGFN 158
           +   ++  +    R+ N+ + E SAK+ +N
Sbjct: 120 K---VKPKQITFHRKKNLQYYEISAKSNYN 146

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 88.7 bits (220), Expect = 7e-23
 Identities = 55/152 (36%), Positives = 87/152 (57%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V LG   VGK+++  +F+ + F  +Y  TI  D   K + ++ R   L++ DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
           +F ++   YI+     ++VY V S  S     +  ++V R +   +V +VLVGNK DL +
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 129 KRQVSIEEGEAKSRELN-VMFIETSAKAGFNI 159
            RQVS E+G + S++   V F ETSA+   N+
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNV 152

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 86.1 bits (213), Expect = 1e-21
 Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 18/157 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V LGD + GKTS++  F    F   Y+ T+  +++   ++++   V L LWDTAGQE 
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYI-HDIFVDGLAVELSLWDTAGQEE 60

Query: 71  F---RSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL 126
           F   RSL  SY  D+ V ++ + V +  S  N  SKW+ E+R      V +VLV  K DL
Sbjct: 61  FDRLRSL--SY-ADTHVIMLCFSVDNPDSLENVESKWLAEIR-HHCPGVKLVLVALKCDL 116

Query: 127 VEKRQV--------SIEEGEAKSRELN-VMFIETSAK 154
            E R          S EEG A ++ +N   ++E SAK
Sbjct: 117 REPRNERDRGTHTISYEEGLAVAKRINACRYLECSAK 153

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 85.1 bits (211), Expect = 2e-21
 Identities = 41/153 (26%), Positives = 74/153 (48%), Gaps = 4/153 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            K+V +GD +VGK++++ R + +K   T Y+     ++++  +  + +T +  L DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL 126
           E + ++   Y R    ++ V+D+            K   E+     S V I+LVGNK DL
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +  ++        ++      I  SA+ G NI
Sbjct: 122 RD-AKLKTHVAFLFAKLNGEPIIPLSAETGKNI 153

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 85.8 bits (212), Expect = 2e-21
 Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 13/151 (8%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +GD   GKT+ + R +  +F+  Y AT+G++      +     +R  +WDTAGQE+F  L
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  IPSYIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVS 133
              Y      A++++DV +R ++ N   W  D VR     ++ IVL GNK D V+ R+V 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VKDRKV- 116

Query: 134 IEEGEAKS----RELNVMFIETSAKAGFNIK 160
               +AKS    R+ N+ + + SAK+ +N +
Sbjct: 117 ----KAKSITFHRKKNLQYYDISAKSNYNFE 143

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 84.9 bits (210), Expect = 4e-21
 Identities = 47/151 (31%), Positives = 79/151 (52%), Gaps = 3/151 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +LVF+G   VGKT++I RF+YD F+  ++ T+  +  SK   +    V + + DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
           F ++    I++     +VY V   +SF    +  +E+   +    V IV+VGNK D + +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 130 RQVSIEEGEAKSR-ELNVMFIETSAKAGFNI 159
           RQV   +  +    + N  F+E SAK   N+
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENV 150

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 84.1 bits (208), Expect = 5e-21
 Identities = 49/154 (31%), Positives = 78/154 (50%), Gaps = 4/154 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F  +Y  TI  D   + +        LQ+ DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD---VIIVLVGNKTDL 126
           +F ++    I      ++VY + S+QS        + +   +G++   + I+LVGNK D 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDE 120

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              R+VS  EG A +R  N  F+ETSAK   N++
Sbjct: 121 SPSREVSSSEGAALARTWNCAFMETSAKTNHNVQ 154

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 84.0 bits (208), Expect = 6e-21
 Identities = 52/158 (32%), Positives = 82/158 (51%), Gaps = 16/158 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++  F  D+F   Y  T+  +++   + ++ + V L LWDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 120

Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG A + ++    ++E SAK
Sbjct: 121 EHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAK 158

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 83.2 bits (206), Expect = 7e-21
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 6/153 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQE 69
           KL+ +G   VGKTS+  + + +KFD    +T GI+     +   +R  +RL +WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK--WIDEVRTERGSDVIIVLVGNKTDLV 127
            + +    ++   S+ ++V+D   R     +    W+ +++   G    ++LVG   D  
Sbjct: 63  IYHATHQFFLTSRSLYLLVFD--LRTGDEVSRVPYWLRQIKA-FGGVSPVILVGTHIDES 119

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
               +  +    K   +       S K G  I 
Sbjct: 120 CDEDILKKALNKKFPAIINDIHFVSCKNGKGIA 152

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 82.4 bits (204), Expect = 2e-20
 Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LGD  +GKTS++ +++  +FD  Y  T+G++F+ KT+ +    +   +WD  GQ  
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL---- 126
           F +++P   +D+   + ++D+  + +  +  +W  + R    +  I +LVG K DL    
Sbjct: 62  FINMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKT-AIPILVGTKYDLFADL 120

Query: 127 -VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             E+++   ++    ++ +    I  S     N+
Sbjct: 121 PPEEQEEITKQARKYAKAMKAPLIFCSTSHSINV 154

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 80.5 bits (199), Expect = 3e-20
 Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 4/117 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD+  GK+S++++ +  +F        G      T+ ++  T  L +WD  G+E 
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
            +     +++ +   ++VYD+  R+S         W+  +R + G  + ++LVGNK 
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLR-KLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 79.5 bits (196), Expect = 3e-19
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTD---- 125
           +  L P     + V ++ + + S  SF N   KW  EVR     +  I+LVG K D    
Sbjct: 62  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 120

Query: 126 ------LVEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                 L EK+   ++  +G A ++E+  V ++E SA     +K
Sbjct: 121 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 164

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 79.1 bits (195), Expect = 5e-19
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKTS++  F   +F   Y  T+  ++++    ++ + V+L LWDTAGQ
Sbjct: 1   RRKLVIVGDGACGKTSLLYVFTLGEFPEEYHPTVFENYVTD-CRVDGKPVQLALWDTAGQ 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P     + V ++ + + +  S  N  +KWI+EVR     +V ++LVG K DL 
Sbjct: 60  EEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCP-NVPVILVGLKKDLR 118

Query: 128 EK----------RQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           ++            V I++ +  +R +    ++E SA  G  +
Sbjct: 119 QEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGV 161

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 76.8 bits (189), Expect = 3e-18
 Identities = 54/162 (33%), Positives = 84/162 (51%), Gaps = 14/162 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R + V ++ + + S+ S+ N   KWI E+R      V IVLVG K DL + 
Sbjct: 62  YNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR-HYAPGVPIVLVGTKLDLRDD 120

Query: 130 RQ----------VSIEEGEAKSRELNV-MFIETSAKAGFNIK 160
           +Q          ++  +GE   +++    +IE S+K   N+K
Sbjct: 121 KQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQNVK 162

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 76.2 bits (187), Expect = 9e-18
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 28/183 (15%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE- 69
           K V +GD +VGKT ++  +  + F   Y  T+  D  S    ++ RTV L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQEE 63

Query: 70  --RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTD- 125
             R R+L  SY + ++V ++ + +AS  S+ N   KW  EV      +V I+LVG K D 
Sbjct: 64  YDRLRTL--SYPQ-TNVFIICFSIASPSSYENVRHKWHPEV-CHHCPNVPILLVGTKKDL 119

Query: 126 ---------LVEKRQVSI--EEGEAKSRELN-VMFIETSA------KAGFNIKVCLMLHP 167
                    L E+ Q  I  ++G A +++++ V ++E SA      K  F   V  +L+P
Sbjct: 120 RNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179

Query: 168 NTV 170
             +
Sbjct: 180 TPI 182

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 73.2 bits (180), Expect = 8e-17
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 16/158 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTD---- 125
           + ++ P    DS   ++ +D++  ++  +   KW  EVR E   +  ++LVG K+D    
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVR-EFCPNTPVLLVGCKSDLRTD 120

Query: 126 ------LVEKRQ--VSIEEGEAKSRELN-VMFIETSAK 154
                 L  KRQ  VS E+G   ++++    ++E SAK
Sbjct: 121 LSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAK 158

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 74.4 bits (183), Expect = 9e-17
 Identities = 46/160 (28%), Positives = 79/160 (49%), Gaps = 11/160 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V LG   VGKT+I++RF+  +F+  Y  TI  DF  K   +     +L + DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSF---------LNTSKWIDEVRTERGSDVIIVLV 120
            F ++    I    V ++V+ + +R+SF         +  +K   + +T+    + +V+ 
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 121 GNKTDLVEKRQVSIEEGEA-KSRELNVMFIETSAKAGFNI 159
           GNK D    R+V  +E E     + N  + E SAK   N+
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 68.7 bits (168), Expect = 4e-15
 Identities = 51/157 (32%), Positives = 79/157 (50%), Gaps = 16/157 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 3   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P     + V +V + V S  SF N   KW+ E+ T        +LVG + DL   
Sbjct: 62  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 120

Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E GE  +R+L  V ++E SA
Sbjct: 121 PSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSA 157

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 64.9 bits (159), Expect = 7e-14
 Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ +    +   T   TIG  F  +T  +E + V+  +WD  GQ++
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIG--FNVET--VEYKNVKFTVWDVGGQDK 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
            R L   Y  ++   + V D + R+        + ++   E      ++++ NK DL   
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGA 115

Query: 130 RQVS-IEE--GEAKSRELNVMFIETSAKAG 156
              S + E  G    +         SA  G
Sbjct: 116 LTESELIELLGLESIKGRRWHIQPCSAVTG 145

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 65.3 bits (160), Expect = 8e-14
 Identities = 31/121 (25%), Positives = 57/121 (47%), Gaps = 6/121 (4%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T   TIG  F  +T  +  + V+  +WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VTYKNVKFTVWDVGGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  R L  +Y  ++   + V D A R       + +  +   E  +D  ++++ NK DL 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLP 128

Query: 128 E 128
            
Sbjct: 129 G 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 65.1 bits (158), Expect = 3e-13
 Identities = 44/166 (26%), Positives = 82/166 (49%), Gaps = 16/166 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   + + KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 6   NPQPLVVRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 64

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  + F +   KW  E+  +      I+L+
Sbjct: 65  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEI-LDYCPSTRILLI 123

Query: 121 GNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           G KTDL             ++  +S E+G A +++L    ++E SA
Sbjct: 124 GCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSA 169

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 62.7 bits (152), Expect = 9e-13
 Identities = 42/157 (26%), Positives = 82/157 (52%), Gaps = 16/157 (10%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 2   KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P     + V ++ + V +  SF N   +W+ E++ E   +V  +L+G + DL   
Sbjct: 61  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPYLLIGTQIDLRDD 119

Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSA 153
                    ++++ +++E+G+  ++E+    ++E SA
Sbjct: 120 PKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSA 156

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 61.4 bits (149), Expect = 4e-12
 Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD----- 64
            ++  LG   VGKT+I+ +F+  +F   Y  T         + L  R   L + D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 65  ----TAGQE----RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS---KWIDEVRTERGS 113
               TAGQE    RFR L     R+S   ++VYD+ S  SF       + I E R     
Sbjct: 61  RYPGTAGQEWMDPRFRGL-----RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 114 DVIIVLVGNKTDLVEKR 130
           +  IV+VGNK D    R
Sbjct: 116 EPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 20/160 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKF-DNTY----QATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++V +GD+ VGK+S+I   + ++F +N      + TI  D        E     +   DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTP-----ERVPTTIV--DT 56

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           + + + R+ + + IR ++V  +VY V    +     +KW+  +R      V I+LVGNK+
Sbjct: 57  SSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KVPIILVGNKS 115

Query: 125 DLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNI 159
           DL +    +  E E      + RE+    +E SAK   N+
Sbjct: 116 DLRDGSSQAGLEEEMLPIMNEFREIET-CVECSAKTLINV 154

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 43/164 (26%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 5   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 63

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL- 126
             + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 64  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 122

Query: 127 ------VE-----KRQVSIEEGEAKSRELNVM-FIETSAKAGFN 158
                 VE     +  VS ++G   ++++    +IE SA    N
Sbjct: 123 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 166

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 18/163 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKT+++  F  D +  +Y  T+  ++ + +  ++   + L +WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTVFENY-TASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNK----T 124
           + ++ P    DS   ++ +D+ SR   L+    KW  E + E   +  +VLVG K    T
Sbjct: 62  YDNVRPLAYPDSDAVLICFDI-SRPETLDSVLKKWQGETQ-EFCPNAKLVLVGCKLDMRT 119

Query: 125 DLVEKRQ--------VSIEEGEAKSRELN-VMFIETSAKAGFN 158
           DL   R+        V+ E+G   +R+L  V ++E S++   N
Sbjct: 120 DLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSEN 162

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 21/126 (16%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ 68
           +V LG  S GKT+++ R  +++F NT   T G  F ++ + +     + V    WD  GQ
Sbjct: 6   IVMLGLDSAGKTTVLYRLKFNEFVNTV-PTKG--FNTEKIKVSLGNAKGVTFHFWDVGGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-----RGSD---VIIVLV 120
           E+ R L  SY R +   V V D           + ++E +TE     + S+   V ++++
Sbjct: 63  EKLRPLWKSYTRCTDGIVFVVDSVD-------VERMEEAKTELHKITKFSENQGVPVLVL 115

Query: 121 GNKTDL 126
            NK DL
Sbjct: 116 ANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 50.0 bits (119), Expect = 5e-08
 Identities = 53/190 (27%), Positives = 74/190 (38%), Gaps = 46/190 (24%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-------GID-FLSKTMYLE------- 54
            K V +GD +VGKT +I     +K    YQ           ID +      LE       
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVD 62

Query: 55  DRTVRLQLWDTAG----QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRT 109
             +V L+LWDT G      RF     +Y R S V ++ + +AS  S  N    W  E+R 
Sbjct: 63  GVSVSLRLWDTFGDHDKDRRF-----AYGR-SDVVLLCFSIASPNSLRNVKTMWYPEIR- 115

Query: 110 ERGSDVIIVLVGNKTDL-------------------VEKRQVSIEEGEAKSRELNVMFIE 150
                V ++LVG K DL                        +  E G A ++EL + + E
Sbjct: 116 HFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYE 175

Query: 151 TSAKAGFNIK 160
           TS    F +K
Sbjct: 176 TSVVTQFGVK 185

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 48.5 bits (116), Expect = 9e-08
 Identities = 49/163 (30%), Positives = 68/163 (41%), Gaps = 28/163 (17%)

Query: 15  LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL 74
           +G Q+ GKT+++      +F      T+G +    T       V +++WD  GQ RFRS+
Sbjct: 5   VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTK----GNVTIKVWDLGGQPRFRSM 60

Query: 75  IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII--------VLV-GNKTD 125
              Y R  +  V V D A R+          EV      D++         +LV GNK D
Sbjct: 61  WERYCRGVNAIVYVVDAADREKL--------EVAKNELHDLLEKPSLEGIPLLVLGNKND 112

Query: 126 LVEKRQVS--IEEGEAKS---RELNVMFIETSAKAGFNIKVCL 163
           L     V   IE+   KS   RE  V     SAK   NI + L
Sbjct: 113 LPGALSVDELIEQMNLKSITDRE--VSCYSISAKEKTNIDIVL 153

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 5/117 (4%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  S GK++++ +  + +   T   T+G  F  + + LE + + L +WD  GQE+
Sbjct: 1   QVLLLGLDSAGKSTLLYKLKHAELVTTI-PTVG--FNVEMLQLE-KHLSLTVWDVGGQEK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
            R++   Y+ ++   V V D +       + K +  + + E    V +VL+ NK DL
Sbjct: 57  MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 8  AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +YK++ +G  + GKT+I+ +F+  +  +T   TIG    S    +  + +R  +WD  G
Sbjct: 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIG----SNVEEIVYKNIRFLMWDIGG 68

Query: 68 QERFRSLIPSYIRDSSVAVVVYDVASRQSF 97
          QE  RS   +Y  ++   ++V D   R+  
Sbjct: 69 QESLRSSWNTYYTNTDAVILVIDSTDRERL 98

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           ++V LG    GKT+I+ +   D+F    Q    I F  +T  +E + ++  +WD  G+ +
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEF---MQPIPTIGFNVET--VEYKNLKFTIWDVGGKHK 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEK 129
            R L   Y  ++   V V D + R         + ++ TE+   D ++++  NK D+   
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDV--A 113

Query: 130 RQVSIEE 136
             +S+EE
Sbjct: 114 GALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats

 Score = 46.9 bits (112), Expect = 5e-07
 Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 8/127 (6%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+VFLG  + GKT+++     D+    +  T+       +  L    V+   +D  G E+
Sbjct: 21  KIVFLGLDNAGKTTLLHMLKDDRLA-QHVPTLH----PTSEELTIGNVKFTTFDLGGHEQ 75

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVEK 129
            R +   Y  +    V + D A  + F  + + +D +   E  ++V I+++GNK D    
Sbjct: 76  ARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANVPILILGNKIDK--P 133

Query: 130 RQVSIEE 136
             VS EE
Sbjct: 134 GAVSEEE 140

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 42.5 bits (100), Expect = 2e-05
 Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 20/124 (16%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +    +   T   T+G +  + T     + V+  +WD  GQ++
Sbjct: 11  RILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNVETVTY----KNVKFNVWDVGGQDK 65

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y   +   + V D A R         IDE R E           D ++++  N
Sbjct: 66  IRPLWRHYYTGTQGLIFVVDSADRDR-------IDEARQELHRIINDREMRDALLLVFAN 118

Query: 123 KTDL 126
           K DL
Sbjct: 119 KQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 58  VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVI 116
            RL  WD  GQE  RSL   Y  +S   + V D   R+ F  +    ++V   E    V 
Sbjct: 51  ARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVP 110

Query: 117 IVLVGNKTDL-----VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           ++++ NK DL     V + +   ++  A     + +    SA  G  ++  +
Sbjct: 111 LLVLANKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGI 162

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG +  +    +  + +   +WD  GQ++
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVET----VTYKNISFTVWDVGGQDK 69

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y  ++   + V D   R         IDE R E           D +I++  N
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDRDR-------IDEAREELHRMLNEDELRDAVILVFAN 122

Query: 123 KTDLVE 128
           K DL +
Sbjct: 123 KQDLPD 128

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 18/158 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMY------------DKFDNTYQATIGIDFLSKTMYLEDRTV 58
           K+V +G    GKT+ +                          T+ +DF S  +   + T 
Sbjct: 12  KIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD--EDTG 69

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV 118
            + L+ T GQERF+ +     R +  A+V+ D +SR    +  + ID + +     V++ 
Sbjct: 70  -VHLFGTPGQERFKFMWEILSRGAVGAIVLVD-SSRPITFHAEEIIDFLTSRNPIPVVVA 127

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           +  NK DL +           K   L+V  IE  A  G
Sbjct: 128 I--NKQDLFDALPPEKIREALKLELLSVPVIEIDATEG 163

Length = 187

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 41/175 (23%), Positives = 69/175 (39%), Gaps = 41/175 (23%)

Query: 11  KLVFLGDQSVGKTSIITRFM-------YDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           K+  +G  +VGK+S+I   +        D       A    D +      + R   L   
Sbjct: 180 KIAIIGRPNVGKSSLINAILGEERVIVSD------IAGTTRDSIDIEFERDGRKYVL--I 231

Query: 64  DTAG----------QERFRSL--IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER 111
           DTAG           E++     + + I  + V ++V D    +        I  +  E 
Sbjct: 232 DTAGIRRKGKITESVEKYSVARTLKA-IERADVVLLVIDA--TEGISEQDLRIAGLIEEA 288

Query: 112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-------NVMFIETSAKAGFNI 159
           G  ++IV+  NK DLVE+ + ++EE + K R          ++FI  SA  G  +
Sbjct: 289 GRGIVIVV--NKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFI--SALTGQGL 339

Length = 444

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 31/147 (21%)

Query: 11  KLVFLGDQSVGKTS----IITRFMYDKFDNTYQATIGIDFL---------SKTMYLEDRT 57
           +++ +GD  VGK+S    I+      +   T   T+G+  +         +      +R 
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 58  VRLQLWDTAGQERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--- 111
             ++LWD +G ER+   RSL  S I      + V+D++ R++  +  KW  EV       
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQING---VIFVHDLSQRRTKTSLQKWASEVAATGTFS 139

Query: 112 ---------GSDVIIVLVGNKTDLVEK 129
                    G  V  +++GNK D+  K
Sbjct: 140 APLGSGGPGGLPVPYIVIGNKADIAPK 166

Length = 334

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVR------LQLWD 64
          K++ +G +  GK+S+ +      F N Y        L  T+ +E   VR      L LWD
Sbjct: 1  KVLLMGLRGSGKSSMRSII----FSN-YSPR-DTLRLGATIDVEQSHVRFLGNLTLNLWD 54

Query: 65 TAGQERFRSLIPSYIRD---SSVAVVVY--DVASRQ 95
            GQ+ F     +  ++   S+V V++Y  DV SR+
Sbjct: 55 CPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESRE 90

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206689 cd04102, RabL3, Rab GTPase-like family 3 (Rab-like3)

 Score = 38.3 bits (89), Expect = 7e-04
 Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 14/123 (11%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-------IDFLSKTMYLEDRTVRLQLW 63
           K++ LGD  VGK+S++     ++       T+G         +   T   E++T  ++LW
Sbjct: 2   KVLVLGDSGVGKSSLVHLLCKNQVLGNPSWTVGCSVDVRHHTYGEGTP--EEKTFYVELW 59

Query: 64  DTAGQ----ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVL 119
           D  G     E  +S    +    +  + V+D+ +++S  N  +W  E    R +    +L
Sbjct: 60  DVGGSVGSAESVKSTRAVFYNQINGIIFVHDLTNKKSSQNLYRWSLEA-LNRDTFPAGLL 118

Query: 120 VGN 122
           V N
Sbjct: 119 VTN 121

RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. Length = 204

>gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 25/128 (19%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERF 71
           + LG    GKT++ T+    K  +T  +   I+    + Y    +  +L L D  G E+ 
Sbjct: 4   LLLGPSDSGKTALFTKLTTGKVRSTVTS---IEPNVASFYSNSSKGKKLTLVDVPGHEKL 60

Query: 72  RSLIPSYIRDSSVAVV-VYDVASRQS------------FLNTSKWIDEVRTERGSDVIIV 118
           R  +  Y++ S  A+V V D A+ Q               +  K  +++         I+
Sbjct: 61  RDKLLEYLKASLKAIVFVVDSATFQKNIRDVAEFLYDILTDLEKIKNKIP--------IL 112

Query: 119 LVGNKTDL 126
           +  NK DL
Sbjct: 113 IACNKQDL 120

Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 36.2 bits (84), Expect = 0.003
 Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ + +  +  +    T G +  +    ++    +L +WD  GQ +
Sbjct: 17  RILLLGLDNAGKTTILKQ-LASEDISHITPTQGFNIKN----VQADGFKLNVWDIGGQRK 71

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV-GNKTDLVE 128
            R    +Y  ++ V + V D A R+ F    + + E+  E     + VLV  NK DL+ 
Sbjct: 72  IRPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLT 130

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG  + GKT+I+ +F   +  +T   T+G  F  KT  LE    +L +WD  GQ+ 
Sbjct: 16  RILMLGLDNAGKTTILKKFN-GEDISTISPTLG--FNIKT--LEYNGYKLNIWDVGGQKS 70

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDL 126
            RS   +Y   +   + V D + R    +  + + ++  E    G+ ++I    NK DL
Sbjct: 71  LRSYWRNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFA--NKQDL 127

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 35.9 bits (84), Expect = 0.004
 Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 29/115 (25%)

Query: 58  VRLQLWDTAG------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID 105
           + ++L DTAG             ER R  I     ++ + ++V D +            D
Sbjct: 51  IPVRLIDTAGLRETEDEIEKIGIERAREAI----EEADLVLLVVDASEGLDEE------D 100

Query: 106 EVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
               E  +   +++V NK+DL+   +   E             I  SAK G  I 
Sbjct: 101 LEILELPAKKPVIVVLNKSDLLSDAEGISELNGKP-------IIAISAKTGEGID 148

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 35.5 bits (82), Expect = 0.004
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 19/155 (12%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ LG    GKT+I+ R    +   T   TIG +  +    +  + ++ Q+WD  GQ  
Sbjct: 1   RILILGLDGAGKTTILYRLQVGEVVTTI-PTIGFNVET----VTYKNLKFQVWDLGGQTS 55

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKTDL 126
            R     Y  ++   + V D   R   L  SK   E+      E   D ++++  NK D+
Sbjct: 56  IRPYWRCYYSNTDAIIYVVDSTDRDR-LGISK--SELHAMLEEEELKDAVLLVFANKQDM 112

Query: 127 ---VEKRQVSIEEG--EAKSRELNVMFIETSAKAG 156
              + + +V+ + G  E K R   +   +TSA  G
Sbjct: 113 PGALSEAEVAEKLGLSELKDRTWQI--FKTSATKG 145

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	100.0
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	100.0
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
PLN03110	216	Rab GTPase; Provisional	100.0
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	100.0
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	100.0
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	100.0
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	100.0
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	100.0
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	100.0
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	100.0
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	100.0
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	100.0
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	100.0
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	100.0
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	100.0
PLN03108	210	Rab family protein; Provisional	100.0
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	100.0
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	100.0
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	100.0
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	100.0
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	100.0
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	100.0
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	100.0
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	100.0
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	100.0
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	100.0
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	100.0
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	100.0
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	100.0
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	100.0
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	100.0
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	100.0
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	100.0
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	100.0
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	100.0
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	100.0
PLN03118	211	Rab family protein; Provisional	100.0
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	100.0
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	100.0
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	100.0
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	100.0
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	100.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	100.0
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	100.0
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	100.0
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	100.0
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	100.0
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	100.0
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	100.0
KOG0395	196	consensus Ras-related GTPase [General function pre	100.0
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	100.0
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	100.0
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	100.0
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	100.0
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	100.0
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	100.0
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	100.0
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	100.0
PLN00223	181	ADP-ribosylation factor; Provisional	100.0
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	100.0
PTZ00133	182	ADP-ribosylation factor; Provisional	100.0
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	100.0
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	100.0
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.98
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.98
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.98
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.98
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.98
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.97
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.97
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.97
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.97
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.97
PLN00023	334	GTP-binding protein; Provisional	99.97
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.97
PTZ00099	176	rab6; Provisional	99.97
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.97
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.96
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.96
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.96
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.96
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.96
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.96
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.96
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.96
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.96
PRK12299	335	obgE GTPase CgtA; Reviewed	99.95
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.95
COG1100	219	GTPase SAR1 and related small G proteins [General	99.95
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.95
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.95
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.95
PRK04213	201	GTP-binding protein; Provisional	99.95
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.94
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.94
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.94
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.94
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.94
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.94
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.93
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.93
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.93
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.93
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.93
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.93
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.93
cd00881	189	GTP_translation_factor GTP translation factor fami	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.92
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.92
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.92
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.92
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.92
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.92
PRK03003	472	GTP-binding protein Der; Reviewed	99.92
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.91
PRK11058	426	GTPase HflX; Provisional	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.91
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.91
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.91
KOG1673	205	consensus Ras GTPases [General function prediction	99.91
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.91
PRK05306	787	infB translation initiation factor IF-2; Validated	99.91
PRK12296	500	obgE GTPase CgtA; Reviewed	99.9
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.9
CHL00189	742	infB translation initiation factor 2; Provisional	99.9
PRK12298	390	obgE GTPase CgtA; Reviewed	99.9
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.9
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
PRK05433	600	GTP-binding protein LepA; Provisional	99.89
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.89
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.89
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.89
PRK00093	435	GTP-binding protein Der; Reviewed	99.89
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.88
PRK12317	425	elongation factor 1-alpha; Reviewed	99.88
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.87
COG2229	187	Predicted GTPase [General function prediction only	99.87
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.86
COG1159	298	Era GTPase [General function prediction only]	99.86
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.86
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.86
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.86
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.86
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.85
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.85
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.85
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.85
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.85
PRK10218	607	GTP-binding protein; Provisional	99.85
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.85
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.84
PRK04004	586	translation initiation factor IF-2; Validated	99.84
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.84
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.83
COG0486	454	ThdF Predicted GTPase [General function prediction	99.83
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.83
COG1160	444	Predicted GTPases [General function prediction onl	99.81
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.81
PRK12736	394	elongation factor Tu; Reviewed	99.8
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.8
PRK12735	396	elongation factor Tu; Reviewed	99.8
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.8
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.8
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.8
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.8
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.79
COG1160	444	Predicted GTPases [General function prediction onl	99.79
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.79
COG0218	200	Predicted GTPase [General function prediction only	99.79
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.78
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.78
PLN00043	447	elongation factor 1-alpha; Provisional	99.78
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.78
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.78
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.78
CHL00071	409	tufA elongation factor Tu	99.77
COG1084	346	Predicted GTPase [General function prediction only	99.77
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.76
PTZ00141	446	elongation factor 1- alpha; Provisional	99.76
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.76
COG2262	411	HflX GTPases [General function prediction only]	99.75
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.75
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.75
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.74
PRK00049	396	elongation factor Tu; Reviewed	99.74
PLN03126	478	Elongation factor Tu; Provisional	99.74
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.73
KOG1145	683	consensus Mitochondrial translation initiation fac	99.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.73
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
COG1163	365	DRG Predicted GTPase [General function prediction	99.72
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.72
PLN03127	447	Elongation factor Tu; Provisional	99.71
KOG0090	238	consensus Signal recognition particle receptor, be	99.71
COG0536	369	Obg Predicted GTPase [General function prediction	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.71
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.7
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.68
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.68
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.67
PRK13351	687	elongation factor G; Reviewed	99.66
COG3596	296	Predicted GTPase [General function prediction only	99.66
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.65
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.64
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.64
PRK12739	691	elongation factor G; Reviewed	99.64
PRK09602	396	translation-associated GTPase; Reviewed	99.63
PRK09866	741	hypothetical protein; Provisional	99.63
PRK00007	693	elongation factor G; Reviewed	99.62
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.62
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.6
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.6
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.6
PRK14845	1049	translation initiation factor IF-2; Provisional	99.6
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.6
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.6
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.58
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.58
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.58
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.56
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.55
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.54
PRK13768	253	GTPase; Provisional	99.53
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.52
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.51
PRK12740	668	elongation factor G; Reviewed	99.51
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.51
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.48
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.48
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.47
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.47
PTZ00416	836	elongation factor 2; Provisional	99.46
PTZ00258	390	GTP-binding protein; Provisional	99.46
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.46
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.44
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.44
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.43
PRK09601	364	GTP-binding protein YchF; Reviewed	99.43
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.41
PRK07560	731	elongation factor EF-2; Reviewed	99.41
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.39
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.38
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.35
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.35
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.34
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.34
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.33
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.33
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.29
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.29
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.28
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.26
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.24
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.24
PRK12289	352	GTPase RsgA; Reviewed	99.22
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.22
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.22
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.18
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.18
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.17
PRK00098	298	GTPase RsgA; Reviewed	99.16
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.16
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.15
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.13
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.13
KOG0410	410	consensus Predicted GTP binding protein [General f	99.12
PRK12288	347	GTPase RsgA; Reviewed	99.12
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.12
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.1
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.06
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.04
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.04
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.04
KOG1143	591	consensus Predicted translation elongation factor	99.03
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	99.01
KOG0085	359	consensus G protein subunit Galphaq/Galphay, small	98.97
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.96
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.94
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.93
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.89
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.89
KOG2486	320	consensus Predicted GTPase [General function predi	98.89
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.85
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.83
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.82
KOG0099	379	consensus G protein subunit Galphas, small G prote	98.8
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.79
KOG4273	418	consensus Uncharacterized conserved protein [Funct	98.78
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.77
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.77
PRK10416	318	signal recognition particle-docking protein FtsY;	98.76
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.76
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.75
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.74
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.74
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.73
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.71
PRK14974	336	cell division protein FtsY; Provisional	98.71
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.7
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.7
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.7
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.7
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.69
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.67
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.65
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.63
PRK12288	347	GTPase RsgA; Reviewed	98.62
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.59
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.57
PRK01889	356	GTPase RsgA; Reviewed	98.56
COG1161	322	Predicted GTPases [General function prediction onl	98.56
COG1162	301	Predicted GTPases [General function prediction onl	98.55
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.55
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.54
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.53
cd03112	158	CobW_like The function of this protein family is u	98.51
KOG0460	449	consensus Mitochondrial translation elongation fac	98.51
PRK12289	352	GTPase RsgA; Reviewed	98.5
PRK13796	365	GTPase YqeH; Provisional	98.5
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.47
COG1162	301	Predicted GTPases [General function prediction onl	98.46
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.45
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.44
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	98.39
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.37
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.36
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.34
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.34
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.33
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.32
PRK00098	298	GTPase RsgA; Reviewed	98.32
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.32
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.31
PRK13796	365	GTPase YqeH; Provisional	98.3
COG0523	323	Putative GTPases (G3E family) [General function pr	98.28
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.28
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.26
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.24
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	98.24
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	98.24
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.23
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.23
cd03114	148	ArgK-like The function of this protein family is u	98.21
TIGR00959	428	ffh signal recognition particle protein. This mode	98.21
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.18
PRK13695	174	putative NTPase; Provisional	98.17
PRK10867	433	signal recognition particle protein; Provisional	98.14
COG3523	1188	IcmF Type VI protein secretion system component Va	98.14
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.12
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	98.12
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	98.1
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	98.06
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.05
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.98
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.97
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.96
cd03111	106	CpaE_like This protein family consists of proteins	97.96
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.95
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.92
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.89
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	97.88
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.85
PRK08118	167	topology modulation protein; Reviewed	97.85
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.84
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.84
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.82
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.82
PRK07261	171	topology modulation protein; Provisional	97.81
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.79
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.79
KOG1534	273	consensus Putative transcription factor FET5 [Tran	97.79
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	97.79
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	97.78
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.76
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	97.74
COG0802	149	Predicted ATPase or kinase [General function predi	97.74
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.74
PRK10646	153	ADP-binding protein; Provisional	97.73
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.73
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.7
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.69
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.67
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.66
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	97.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.65
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.64
cd02036	179	MinD Bacterial cell division requires the formatio	97.63
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.62
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.59
cd03110	179	Fer4_NifH_child This protein family's function is	97.59
KOG1533	290	consensus Predicted GTPase [General function predi	97.59
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.58
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.58
PRK13851	344	type IV secretion system protein VirB11; Provision	97.55
PRK14530	215	adenylate kinase; Provisional	97.55
PTZ00088	229	adenylate kinase 1; Provisional	97.55
smart00382	148	AAA ATPases associated with a variety of cellular	97.54
PRK06217	183	hypothetical protein; Validated	97.54
KOG2484	435	consensus GTPase [General function prediction only	97.53
PF00004	132	AAA: ATPase family associated with various cellula	97.52
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.51
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.51
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.51
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.5
PRK03839	180	putative kinase; Provisional	97.5
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.49
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.49
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.48
PRK14738	206	gmk guanylate kinase; Provisional	97.47
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.46
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.46
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.46
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.45
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.43
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.42
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	97.42
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.42
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.42
PRK14737	186	gmk guanylate kinase; Provisional	97.42
PRK14532	188	adenylate kinase; Provisional	97.42
PRK05541	176	adenylylsulfate kinase; Provisional	97.42
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.41
PRK01889	356	GTPase RsgA; Reviewed	97.41
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.41
PRK08233	182	hypothetical protein; Provisional	97.41
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.4
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.39
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.38
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.38
PRK05480	209	uridine/cytidine kinase; Provisional	97.37
PRK13949	169	shikimate kinase; Provisional	97.36
PRK14531	183	adenylate kinase; Provisional	97.36
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.35
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	97.34
PLN02200	234	adenylate kinase family protein	97.34
PRK02496	184	adk adenylate kinase; Provisional	97.32
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.32
PRK00625	173	shikimate kinase; Provisional	97.32

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.1e-45  Score=234.05  Aligned_cols=163  Identities=42%  Similarity=0.709  Sum_probs=157.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      -..-+||+++|++|+|||+|+.|+..+.+...+.+|.++++..+.+.+++..++++||||+||++|++....||+++|++
T Consensus         6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi   85 (205)
T KOG0084|consen    6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   85 (205)
T ss_pred             cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe-EEEEecCCCCChHHHhh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIKVCLM  164 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~  164 (170)
                      |+|||+++.+||..+..|+.++.++...++|.++|+||+|+.+.+.++.++++.++.+++++ ++++||+++.++++.|.
T Consensus        86 i~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~  165 (205)
T KOG0084|consen   86 IFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL  165 (205)
T ss_pred             EEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998 99999999999999998


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      .|+.
T Consensus       166 ~la~  169 (205)
T KOG0084|consen  166 TLAK  169 (205)
T ss_pred             HHHH
Confidence            8764

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-43  Score=229.50  Aligned_cols=168  Identities=44%  Similarity=0.736  Sum_probs=160.3

Q ss_pred             CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC
Q 030880            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (170)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   81 (170)
                      ...+...-+||+++|+++||||+|+.++..+.+...+..+.++++..+.+..++..+++++|||+||+++.++...|+++
T Consensus         5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg   84 (207)
T KOG0078|consen    5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG   84 (207)
T ss_pred             ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence            33455677999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      |+++++|||+++..||+++..|+..+..+...++|.++||||+|+..+++++.+.+++++.++|+.|+++||++|.||++
T Consensus        85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            99999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCC
Q 030880          162 CLMLHPNT  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      .|-.|+..
T Consensus       165 aF~~La~~  172 (207)
T KOG0078|consen  165 AFLSLARD  172 (207)
T ss_pred             HHHHHHHH
Confidence            99888654

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6e-43  Score=223.54  Aligned_cols=164  Identities=81%  Similarity=1.165  Sum_probs=156.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      +.+.+|++++|+.++||||||+++.++.+...|.++.+.++..+++.+.+..+++++|||+||++|+++.+.|++++.++
T Consensus        19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va   98 (221)
T KOG0094|consen   19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   98 (221)
T ss_pred             cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence            45669999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |+|||+++..||+...+|++.+....+. ++.+++||||.|+.+++++..+++...++++++.|+++|++.|.||.++|.
T Consensus        99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr  178 (221)
T KOG0094|consen   99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR  178 (221)
T ss_pred             EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence            9999999999999999999999988875 588999999999999999999999999999999999999999999999998


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .|+..
T Consensus       179 rIaa~  183 (221)
T KOG0094|consen  179 RIAAA  183 (221)
T ss_pred             HHHHh
Confidence            87643

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-42  Score=222.09  Aligned_cols=164  Identities=40%  Similarity=0.772  Sum_probs=156.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+|++++|+.++|||||+.|+..+.+.....++.+..+....+.+.+..+++.||||+|+++|.++.+.|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            45789999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||+++.+||..++.|+.++.+...+++-+.++|||+|+.+.+++..+++..+++..+..|+++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999999988888888999999999999999999999999999999999999999999999998


Q ss_pred             CCCC
Q 030880          167 PNTV  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      ++.+
T Consensus       163 a~~l  166 (200)
T KOG0092|consen  163 AEKL  166 (200)
T ss_pred             HHhc
Confidence            7754

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=5.1e-41  Score=225.24  Aligned_cols=159  Identities=35%  Similarity=0.659  Sum_probs=146.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +.|+++|+.|+|||||++++..+.+...+.++.+.++..+.+..++..+.+.+||++|+++|..++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46899999999999999999999998888888888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |+++++||+++..|+..+......+.|+++|+||+|+.+.+++..+++.+++++. ++.|++|||++|.|++++|++|++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887776678999999999999878888889999999875 789999999999999999999875

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-41  Score=215.83  Aligned_cols=164  Identities=38%  Similarity=0.708  Sum_probs=156.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      .....+|++++|+.|+|||+|+.+++...+.+.+..|.+.++..+.+++++..+++++|||+|++.+++....|++.+.+
T Consensus         2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G   81 (216)
T KOG0098|consen    2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG   81 (216)
T ss_pred             CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +++|||+++++||..+..|+..++++..++.-+++++||+|+...+.++.+|++.|+++.|..++++|+++++|+.|.|-
T Consensus        82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~  161 (216)
T KOG0098|consen   82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI  161 (216)
T ss_pred             eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence            99999999999999999999999999888999999999999999999999999999999999999999999999999997


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      ..+.
T Consensus       162 nta~  165 (216)
T KOG0098|consen  162 NTAK  165 (216)
T ss_pred             HHHH
Confidence            6543

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=1.4e-40  Score=221.17  Aligned_cols=161  Identities=34%  Similarity=0.583  Sum_probs=148.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|..|+|||||+.++..+.+...+.++.+.++....+..++..+.+.+||++|+++|..++..+++++|++++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999988877777777777777777788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||+++++||+.+..|+.++.... ++.|++||+||.|+...+.+..++++.+++..++.|++|||++|.||+++|++|+
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~  163 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELA  163 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999999997765 6899999999999987778889999999999999999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       164 ~~  165 (189)
T cd04121         164 RI  165 (189)
T ss_pred             HH
Confidence            53

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=4e-41  Score=208.82  Aligned_cols=163  Identities=39%  Similarity=0.696  Sum_probs=154.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|.+|+|||+|+.++..+.+.+....+.+.++..+.+.+++..+++.+|||+|+++|+.+.+.|++++.++|
T Consensus         9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI   88 (209)
T KOG0080|consen    9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII   88 (209)
T ss_pred             ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence            44599999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++.+++|.++..|+.++..++. +++..++|+||+|....+.++.+++..+++++++.|+++||++.+|+...|+.
T Consensus        89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fee  168 (209)
T KOG0080|consen   89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEE  168 (209)
T ss_pred             EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHH
Confidence            99999999999999999999998875 77888999999999888999999999999999999999999999999999988


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       169 lveK  172 (209)
T KOG0080|consen  169 LVEK  172 (209)
T ss_pred             HHHH
Confidence            7643

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1.6e-40  Score=210.53  Aligned_cols=168  Identities=38%  Similarity=0.617  Sum_probs=155.3

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |++......+||+++|++|+|||||++++.++++...+..+.+.++..+.+.+++..+.++||||+|+++|.++-..+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            66666677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCc--cccCHHHHHHHHhhcC-CeEEEEec
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELN-VMFIETSA  153 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~  153 (170)
                      ++|+++++||+++++||+.+..|..++.....    ..-|+||+|||+|+.+.  ++++...+..||+..| ++||++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            99999999999999999999999999988765    45689999999999653  7889999999998876 79999999


Q ss_pred             CCCCChHHHhhcCCC
Q 030880          154 KAGFNIKVCLMLHPN  168 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~  168 (170)
                      +...||++.|+.++.
T Consensus       161 K~~~NV~~AFe~ia~  175 (210)
T KOG0394|consen  161 KEATNVDEAFEEIAR  175 (210)
T ss_pred             cccccHHHHHHHHHH
Confidence            999999999988754

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=3.7e-39  Score=211.36  Aligned_cols=161  Identities=34%  Similarity=0.661  Sum_probs=147.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+.+.....+...+..+++.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            37999999999999999999999988887777777777777777888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+.....++.|+++|+||+|+.++..+..+++..+++..++.++++||++|.|++++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999987776678999999999999888888889999999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       162 ~  162 (166)
T cd04122         162 K  162 (166)
T ss_pred             H
Confidence            3

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=3.3e-39  Score=212.54  Aligned_cols=158  Identities=35%  Similarity=0.568  Sum_probs=141.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +|++++|++|+|||+|+.++..+.+...+.++.+..+ ...+..++..+++.+|||+|+++|..++..+++++|++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888888887444 555667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCcc----------ccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880           90 DVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------QVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        90 d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (170)
                      |+++++||+.+ ..|+..+.... .+.|++||+||+|+.+.+          .+..+++.++++..++ .|++|||++|.
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~  159 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ  159 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence            99999999998 68999987765 579999999999996543          4788999999999998 69999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      ||+++|+.+++.
T Consensus       160 nV~~~F~~~~~~  171 (176)
T cd04133         160 NVKAVFDAAIKV  171 (176)
T ss_pred             CHHHHHHHHHHH
Confidence            999999988753

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.3e-38  Score=207.80  Aligned_cols=160  Identities=37%  Similarity=0.635  Sum_probs=147.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++..+.+.+.+.++.+.+.....+...+..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999998888888887777777788888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++++|+.+..|+..+......+.|+++|+||.|+..++.+..+++..+++..+++|+++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999999887765679999999999998888888899999999999999999999999999999999865

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=6.4e-39  Score=212.31  Aligned_cols=160  Identities=25%  Similarity=0.472  Sum_probs=143.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++..+.+...+.|+.+.. +...+.+++..+.+.+|||+|+++|..++..+++++|+++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~-~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee-eEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            456899999999999999999999999988888888744 4566778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++.+++++.++ .|++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S  160 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  160 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence            99999999999997 89999998765 6799999999999854            245889999999999996 999999


Q ss_pred             cCCCCC-hHHHhhcCCC
Q 030880          153 AKAGFN-IKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~-i~~~~~~l~~  168 (170)
                      |++|.| |+++|+.+++
T Consensus       161 Ak~~~n~v~~~F~~~~~  177 (182)
T cd04172         161 ALQSENSVRDIFHVATL  177 (182)
T ss_pred             cCCCCCCHHHHHHHHHH
Confidence            999998 9999998764

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=3.9e-40  Score=201.83  Aligned_cols=159  Identities=40%  Similarity=0.698  Sum_probs=152.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      ++.+++|++|+|||+|+.++..+.+...|..+.+.+...+++.+++..+++.|||++|+++|+.+...|+++.+++++||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |+++.+||.+.++|+.++++.+ +.+|-++|+||+|..+.+.+..++++.|+...|+.+|++|+++.+|+...|.-|.++
T Consensus        89 DVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            9999999999999999999887 589999999999999999999999999999999999999999999999999877543

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=1.5e-38  Score=212.63  Aligned_cols=160  Identities=31%  Similarity=0.476  Sum_probs=140.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|+.|+|||||+.++..+.+...+.|+.+.. +.....+++..+.+.+|||+|+++|..++..+++++|++|+
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN-YSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            45899999999999999999999999988888888744 44456678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEec
Q 030880           88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA  153 (170)
Q Consensus        88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~  153 (170)
                      |||+++++||+.+. .|+..+.... .++|++||+||.|+.+.            ..+..+++..++++.+ +.|+++||
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHC-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            99999999999996 5888776654 57999999999999644            2356788999999998 59999999


Q ss_pred             CCCCChHHHhhcCCCC
Q 030880          154 KAGFNIKVCLMLHPNT  169 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~~  169 (170)
                      ++|.|++++|++|++.
T Consensus       160 k~g~~v~e~f~~l~~~  175 (191)
T cd01875         160 LNQDGVKEVFAEAVRA  175 (191)
T ss_pred             CCCCCHHHHHHHHHHH
Confidence            9999999999998753

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.4e-38  Score=209.47  Aligned_cols=160  Identities=33%  Similarity=0.511  Sum_probs=143.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|.+|+|||||++++..+.+...+.++.+ ..+...+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIE-DAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCccc-ceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            47999999999999999999999998877778776 33345566788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||+++++||+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..++++.+++|++|||++|.||+++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999999988887654 36799999999999987778888899999999999999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       161 ~~  162 (172)
T cd04141         161 RE  162 (172)
T ss_pred             HH
Confidence            53

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-39  Score=198.39  Aligned_cols=160  Identities=38%  Similarity=0.680  Sum_probs=152.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+|++++|...+|||+|+.++.+..+...+.++.+.++..+++.-...++++++|||.|+++|+.....++++++++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            45799999999999999999999999999999999999988888777788999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      +||++|.+||..++.|...+..+++.+.|+|+++||||+.+++.++.+.+..+++++|..||++|++.+.|+..+|+.+.
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998764

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-39  Score=208.37  Aligned_cols=163  Identities=37%  Similarity=0.693  Sum_probs=156.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ..-+||+++|++++|||-|+.++..+.+.....+|.+.++......++++.++.+||||+||++|+.....|++++.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++.+.+|+.+.+|+.+++.+...++++++|+||+|+...+.+..++++.+++..+..++++||.++.|+.+.|+.+
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~  171 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV  171 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ..+
T Consensus       172 l~~  174 (222)
T KOG0087|consen  172 LTE  174 (222)
T ss_pred             HHH
Confidence            543

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=2.6e-38  Score=208.97  Aligned_cols=158  Identities=26%  Similarity=0.502  Sum_probs=140.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++..+.+...+.|+.+..+ ...+.+++..+.+.+|||+|++.|..+...+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999999888888876444 45677888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEecC
Q 030880           89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (170)
                      ||+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+            .+.+..+++.+++++.++ .|++|||+
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~  158 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF  158 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence            999999999995 88999998775 5799999999999854            235788999999999997 89999999


Q ss_pred             CCCC-hHHHhhcCCC
Q 030880          155 AGFN-IKVCLMLHPN  168 (170)
Q Consensus       155 ~~~~-i~~~~~~l~~  168 (170)
                      +|+| ++++|..+++
T Consensus       159 ~~~~~v~~~F~~~~~  173 (178)
T cd04131         159 TSEKSVRDIFHVATM  173 (178)
T ss_pred             cCCcCHHHHHHHHHH
Confidence            9995 9999988754

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.7e-38  Score=206.43  Aligned_cols=159  Identities=37%  Similarity=0.683  Sum_probs=144.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++++...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988777888776666666666777899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+......+.|+++++||+|+.+.+.+..+++.++++..+++++++|+++|.|++++|+++.+
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999999998776668999999999999877777788888999999999999999999999999999865

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=4.4e-38  Score=214.38  Aligned_cols=160  Identities=27%  Similarity=0.459  Sum_probs=143.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||+|+.++..+.+...+.|+.+..+ ...+..++..+.+.+|||+|++.|..+...+++++|+++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            4578999999999999999999999999888888887444 455778889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||+++++||+. +..|+.++.... ++.|+++|+||+|+.+            .+.+..+++++++++.++ .|++||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS  168 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS  168 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence            9999999999998 589999998765 5789999999999854            256889999999999999 699999


Q ss_pred             cCCCC-ChHHHhhcCCC
Q 030880          153 AKAGF-NIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~-~i~~~~~~l~~  168 (170)
                      |++|. |++++|..+++
T Consensus       169 Aktg~~~V~e~F~~~~~  185 (232)
T cd04174         169 AFTSEKSIHSIFRSASL  185 (232)
T ss_pred             CCcCCcCHHHHHHHHHH
Confidence            99998 89999998764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=5.7e-38  Score=205.94  Aligned_cols=161  Identities=42%  Similarity=0.739  Sum_probs=147.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..+++++|++++|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            48999999999999999999999998888888888777777777788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+......+.|+++++||+|+.+...+..+++..++...+++++++|+++|.|++++|+++.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999999877777888899999999999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus       163 ~  163 (167)
T cd01867         163 D  163 (167)
T ss_pred             H
Confidence            4

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=7.3e-38  Score=211.03  Aligned_cols=160  Identities=36%  Similarity=0.597  Sum_probs=144.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+..+ +..+.+.+||+||++.+..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888888877777777777 7789999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHHHh
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~  163 (170)
                      ||++++++|+.+..|+..+....    ..++|+++|+||+|+.+...+..+++.++++..+ ..++++|+++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999998886542    2578999999999997667778899999999999 699999999999999999


Q ss_pred             hcCCCC
Q 030880          164 MLHPNT  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|++.
T Consensus       161 ~~l~~~  166 (201)
T cd04107         161 RFLVKN  166 (201)
T ss_pred             HHHHHH
Confidence            998753

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=7.2e-38  Score=205.26  Aligned_cols=161  Identities=40%  Similarity=0.728  Sum_probs=146.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            37999999999999999999999988777778877777777777788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||+++++++..+..|+..+......+.|+++++||+|+.....+..+++..+++..+++++++|+++|.|++++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999998776567999999999999877778888999999999999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       162 ~  162 (166)
T cd01869         162 E  162 (166)
T ss_pred             H
Confidence            3

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=100.00  E-value=7.1e-38  Score=204.48  Aligned_cols=159  Identities=42%  Similarity=0.716  Sum_probs=150.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++++..+...+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999998888888888889999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      +++++||+.+..|+..+......+.|++|++||.|+.+.+.++.+++++++++++++|+++|++++.|+.++|..+++.
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~  159 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK  159 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999998887679999999999998888999999999999999999999999999999999988654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04136 Rap_like Rap-like subfamily

Probab=100.00  E-value=1.1e-37  Score=203.72  Aligned_cols=161  Identities=34%  Similarity=0.526  Sum_probs=142.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|++|+|||||++++..+.+...+.++.+ +.....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            37999999999999999999999888777777765 45556677788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+..... .+.|+++++||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999999877643 6799999999999977667777788888888889999999999999999999987


Q ss_pred             CCC
Q 030880          168 NTV  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04113 Rab4 Rab4 subfamily

Probab=100.00  E-value=2.3e-37  Score=201.92  Aligned_cols=161  Identities=37%  Similarity=0.711  Sum_probs=147.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777777777777777777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |+++++++..+..|+..+.....++.|+++++||.|+.+...+..+++..++...++.++++|++++.|++++|++++++
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999999999887777889999999999998777788899999999999999999999999999999999876


Q ss_pred             C
Q 030880          170 V  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            4

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.4e-37  Score=205.28  Aligned_cols=158  Identities=30%  Similarity=0.477  Sum_probs=138.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||+.++..+.+...+.|+.+..+ ...+...+..+.+.+||++|++++..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeee-EEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            6899999999999999999999999888888887444 445667788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEecCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAKA  155 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (170)
                      |++++++|+.+. .|+..+.... ++.|+++|+||+|+.+.            +.+..+++.+++++.+ +.|+++||++
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t  159 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHC-PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence            999999999986 5888887654 57999999999998543            4577888999999887 6999999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      |.|++++|+.+++.
T Consensus       160 g~~v~~~f~~~~~~  173 (175)
T cd01874         160 QKGLKNVFDEAILA  173 (175)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999988753

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=1.1e-37  Score=206.85  Aligned_cols=158  Identities=22%  Similarity=0.508  Sum_probs=139.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|+.|+|||||++++..+.+...+.|+.+.++..+.+..++..+.+.+||++|+++|..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888899888887778888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-----ccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-----KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |++++++++++..|+..+........| ++|+||+|+..     ......+++.++++..++.++++||++|.|++++|+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999876555567 67899999852     122234677888999999999999999999999999


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      ++++
T Consensus       160 ~l~~  163 (182)
T cd04128         160 IVLA  163 (182)
T ss_pred             HHHH
Confidence            9865

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-38  Score=196.29  Aligned_cols=161  Identities=37%  Similarity=0.675  Sum_probs=153.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .-+|++++|+.|+|||+|+.++..+++.+....+.+.++..+.+.+.++.++++||||+|+++|++....|++++.+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            34799999999999999999999999998888999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||++++++|+.+..|+..++....+++-+++++||.|+.+++++...++..++++..+.+.++|+++|+|+.|.|-..+
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  167 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence            99999999999999999999999888888999999999999999999999999999999999999999999999986554


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       168 ~  168 (214)
T KOG0086|consen  168 R  168 (214)
T ss_pred             H
Confidence            3

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=1.7e-37  Score=205.98  Aligned_cols=162  Identities=38%  Similarity=0.641  Sum_probs=143.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC----------CeEEEEEEEeCCCcccccccchh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPS   77 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~   77 (170)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.+.....+...          +..+.+.+||+||++++...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999999888888887766665555443          45688999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (170)
                      +++++|++++|||++++++|..+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++.+++++.+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999987654 357899999999999877778888999999999999999999999


Q ss_pred             CChHHHhhcCCCC
Q 030880          157 FNIKVCLMLHPNT  169 (170)
Q Consensus       157 ~~i~~~~~~l~~~  169 (170)
                      .|++++|++|++.
T Consensus       163 ~~v~~l~~~l~~~  175 (180)
T cd04127         163 TNVEKAVERLLDL  175 (180)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>PLN03110 Rab GTPase; Provisional

Probab=100.00  E-value=3.1e-37  Score=209.80  Aligned_cols=165  Identities=36%  Similarity=0.657  Sum_probs=150.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++..+.+.+||++|++++..++..+++++++
T Consensus         8 ~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~   87 (216)
T PLN03110          8 EYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVG   87 (216)
T ss_pred             ccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence            34466899999999999999999999998877778888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +++|||++++++|+.+..|+..+......+.|+++++||+|+.+.+.+..+++..++...+++++++||++|.|++++|+
T Consensus        88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~  167 (216)
T PLN03110         88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ  167 (216)
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987777888889999999999999999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|++.
T Consensus       168 ~l~~~  172 (216)
T PLN03110        168 TILLE  172 (216)
T ss_pred             HHHHH
Confidence            98653

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-38  Score=195.13  Aligned_cols=159  Identities=38%  Similarity=0.668  Sum_probs=153.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      -+||+++|..|+|||+|++++..+.+++....+.+.++..+++.+.++.+++++|||+|+++|++....|++.++++|++
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++...+|+-+..|+.++.++...++-.|+|+||+|+.+.++++.+.++++++....-|.++|+++..|++.+|..++
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            9999999999999999999999988899999999999999999999999999999888999999999999999998875

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=2.8e-37  Score=202.61  Aligned_cols=160  Identities=30%  Similarity=0.559  Sum_probs=145.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888888888887777888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |++++++++.+..|+..+.....     .+.|+++|+||+|+.++.....++...++...+++++++|+++|.|++++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            99999999999999999987653     4689999999999976666778888889998899999999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|.+.
T Consensus       161 ~l~~~  165 (168)
T cd04119         161 TLFSS  165 (168)
T ss_pred             HHHHH
Confidence            98754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04175 Rap1 Rap1 subgroup

Probab=100.00  E-value=2.3e-37  Score=202.50  Aligned_cols=160  Identities=31%  Similarity=0.510  Sum_probs=141.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|.+|+|||||++++..+.+...+.++.+.. ........+..+.+.+|||||++++..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            4799999999999999999999988877777776633 345666778889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+.... ..+.|+++++||+|+.+...+..+++..+++..+++++++||++|.|++++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999987654 36899999999999987777777788889888999999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (164)
T cd04175         160 RQ  161 (164)
T ss_pred             HH
Confidence            64

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01864 Rab19 Rab19 subfamily

Probab=100.00  E-value=7.1e-37  Score=200.37  Aligned_cols=162  Identities=40%  Similarity=0.702  Sum_probs=145.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988887777777767767777778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++++++.+..|+..+......+.|+++|+||+|+.........++..+++..+. .++++|+++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999876667899999999999987777788889999998886 78999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            765

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=100.00  E-value=6.2e-37  Score=200.63  Aligned_cols=161  Identities=37%  Similarity=0.714  Sum_probs=146.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++++..++..++++++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999988777788888777777788888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+......++|+++|+||.|+...+.+..++...++...++.++++||++|.|++++|++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998877667999999999999877777888889999888999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       163 ~  163 (165)
T cd01868         163 E  163 (165)
T ss_pred             H
Confidence            4

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04125 RabA_like RabA-like subfamily

Probab=100.00  E-value=5.8e-37  Score=204.72  Aligned_cols=160  Identities=42%  Similarity=0.712  Sum_probs=145.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999988777888877777777778888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+........|+++++||+|+.+...+..+++..+++..+++++++|+++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988766679999999999998777788888899999999999999999999999999998653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=6.5e-37  Score=201.91  Aligned_cols=159  Identities=31%  Similarity=0.509  Sum_probs=139.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||+.++..+.+...+.|+.. +.+......++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            6999999999999999999999998888888775 444556667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      |+++++||+.+. .|+..+.... ++.|+++|+||+|+.+.            ..+..+++..++++++. .+++|||++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  159 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999985 6888776654 58999999999998542            24778999999999995 999999999


Q ss_pred             CCChHHHhhcCCCCC
Q 030880          156 GFNIKVCLMLHPNTV  170 (170)
Q Consensus       156 ~~~i~~~~~~l~~~i  170 (170)
                      |.|++++|+.+++.+
T Consensus       160 ~~~i~~~f~~l~~~~  174 (174)
T cd01871         160 QKGLKTVFDEAIRAV  174 (174)
T ss_pred             cCCHHHHHHHHHHhC
Confidence            999999999987653

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04109 Rab28 Rab28 subfamily

Probab=100.00  E-value=5.2e-37  Score=208.71  Aligned_cols=159  Identities=36%  Similarity=0.550  Sum_probs=144.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+++ ..+.+.+||++|++.+..++..+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888889988888877777754 578999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ||++++++|+.+..|+..+.....   .+.|+++|+||+|+.+.+.+..+++..+++.+++.++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            999999999999999999887653   45789999999999877778888999999999999999999999999999999


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |++
T Consensus       161 l~~  163 (215)
T cd04109         161 LAA  163 (215)
T ss_pred             HHH
Confidence            865

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd01866 Rab2 Rab2 subfamily

Probab=100.00  E-value=7.9e-37  Score=200.68  Aligned_cols=161  Identities=37%  Similarity=0.717  Sum_probs=146.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+....+.+||+||++++..+...+++++|++++|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999988777777777777777777888888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+.....++.|+++|+||.|+..+..+..+++..++...++.++++|++++.|++++|.++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999999877778888899999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       164 ~  164 (168)
T cd01866         164 E  164 (168)
T ss_pred             H
Confidence            3

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=6.1e-37  Score=204.69  Aligned_cols=162  Identities=31%  Similarity=0.534  Sum_probs=143.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +..+||+++|++|+|||||++++.++.+...+.++.+..+ .+.+..++..+.+.+|||||++++..++..+++++|+++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4579999999999999999999999988777777776443 556677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++|+.+..|+..+..... .+.|+++++||+|+.+...+...++..+++..+++++++||++|.|++++|++
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            99999999999999999998877643 58899999999999777777778888888888999999999999999999999


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       162 l~~~  165 (189)
T PTZ00369        162 LVRE  165 (189)
T ss_pred             HHHH
Confidence            8653

>cd04106 Rab23_lke Rab23-like subfamily

Probab=100.00  E-value=9.6e-37  Score=199.12  Aligned_cols=159  Identities=36%  Similarity=0.675  Sum_probs=143.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC--CeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.++....+...  +..+++.+||+||++++...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999998887778888777766666666  778899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||++++++++.+..|+..+.... .+.|+++|+||+|+.....+..+++..+++..+++++++|+++|.|++++|++|+
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAEC-GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA  159 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999886554 5799999999999987777888889999999999999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (162)
T cd04106         160 EK  161 (162)
T ss_pred             Hh
Confidence            53

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=9.4e-37  Score=205.23  Aligned_cols=160  Identities=38%  Similarity=0.683  Sum_probs=145.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46899999999999999999999998877778888777777777778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||++++++|+.+..|+..+.... ...|++||+||+|+.+...+...++..++...++.++++|+++|.|++++|++|.
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~-~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNC-DDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            999999999999999999987655 6789999999999987777778889999999999999999999999999999986


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       164 ~  164 (199)
T cd04110         164 E  164 (199)
T ss_pred             H
Confidence            5

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04176 Rap2 Rap2 subgroup

Probab=100.00  E-value=1e-36  Score=199.17  Aligned_cols=161  Identities=34%  Similarity=0.536  Sum_probs=142.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|.+|+|||||++++..+.+...+.++.. +.....+..++..+.+.+||+||++++..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988877777654 45556677788888999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++++++++++..|+..+..... .++|+++|+||+|+.+...+...++..++...+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998877643 6899999999999976666677778888888889999999999999999999987


Q ss_pred             CCC
Q 030880          168 NTV  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=6.6e-37  Score=208.39  Aligned_cols=160  Identities=30%  Similarity=0.571  Sum_probs=141.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++..+.+...+.++.+.+.....+...+..+++.+||++|++.+..++..+++++|++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            67799999999999999999999999988888888887877777777777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.. ..+..+++ .+++..++.|+++||++|.|++++|++|
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l  167 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHH
Confidence            9999999999999999999998765 6799999999999853 33444445 7777888999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       168 ~~~  170 (219)
T PLN03071        168 ARK  170 (219)
T ss_pred             HHH
Confidence            753

>cd04111 Rab39 Rab39 subfamily

Probab=100.00  E-value=9.1e-37  Score=206.71  Aligned_cols=161  Identities=39%  Similarity=0.727  Sum_probs=144.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+.....+.. ++..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            589999999999999999999999888777888887877777765 4667899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++++|+++..|+..+..... ...|++|++||.|+.+...+..+++.++++..++.++++|+++|.|++++|++|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999877653 467889999999998777788889999999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       162 ~~~  164 (211)
T cd04111         162 TQE  164 (211)
T ss_pred             HHH
Confidence            753

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=100.00  E-value=3.6e-36  Score=197.88  Aligned_cols=163  Identities=39%  Similarity=0.605  Sum_probs=144.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||+||++++..++..+++++|+++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45689999999999999999999999888777777777776777778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKV  161 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  161 (170)
                      +|||++++++++.+..|+..+.....    .+.|+++++||+|+. .+.+..+++.+++++.+. .++++||++|.|+++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~  161 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA  161 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence            99999999999999999988876542    468999999999986 556678889999998885 899999999999999


Q ss_pred             HhhcCCCCC
Q 030880          162 CLMLHPNTV  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      +|+++++++
T Consensus       162 ~~~~~~~~~  170 (170)
T cd04116         162 AFEEAVRRV  170 (170)
T ss_pred             HHHHHHhhC
Confidence            999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04140 ARHI_like ARHI subfamily

Probab=100.00  E-value=2e-36  Score=198.23  Aligned_cols=158  Identities=33%  Similarity=0.483  Sum_probs=138.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+ ..+..........+.+.+||+||++++..++..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777665 333444556677889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |++++++++.+..|+..+.....   .+.|+++|+||+|+.+.+.+...++..++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            99999999999999887766532   579999999999997766777788888888889999999999999999999998


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      ++
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=100.00  E-value=6.4e-37  Score=204.75  Aligned_cols=158  Identities=35%  Similarity=0.568  Sum_probs=139.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|.+|+|||||+++|..+.+...+.++.+.. .......++..+.+.+|||||+++|..++..+++++|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS-YRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            68999999999999999999988877777776533 34455677888899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           91 VASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ++++++|+.+..|+..+.....   .+.|+++|+||+|+.+...+...++..++..+++.++++||++|.|++++|++++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988866542   5789999999999987777888888889999999999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (190)
T cd04144         160 RA  161 (190)
T ss_pred             HH
Confidence            53

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=100.00  E-value=3.1e-36  Score=198.07  Aligned_cols=158  Identities=35%  Similarity=0.610  Sum_probs=140.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++|+|||||++++..+.+...+.++.+.++........+..+.+.+||+||+++|..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988888998888877777788888999999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ++++++++.+..|+..+.... ....|+++|+||.|+.+...  ...+++..+++++++.++++||++|.|++++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999986654 34578999999999865433  345677888888899999999999999999999886


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       162 ~  162 (170)
T cd04108         162 A  162 (170)
T ss_pred             H
Confidence            5

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04112 Rab26 Rab26 subfamily

Probab=100.00  E-value=1.4e-36  Score=203.19  Aligned_cols=160  Identities=41%  Similarity=0.749  Sum_probs=142.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +||+++|++|+|||||++++..+.+.. .+.++.+.+.....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999988753 5566766666666677788889999999999999999899999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++++++..|+..+......+.|+++++||+|+..++.+..+++..++..++++|+++|+++|.|++++|++|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998876668999999999999777777788899999999999999999999999999999865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (191)
T cd04112         161 E  161 (191)
T ss_pred             H
Confidence            3

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04126 Rab20 Rab20 subfamily

Probab=100.00  E-value=1.4e-36  Score=205.90  Aligned_cols=155  Identities=35%  Similarity=0.575  Sum_probs=134.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|.+|+|||||++++..+.+.. +.++.+.++.....    ..+.+.+||++|++.|..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46666655443322    4578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------ccccCHHHHHHHHhhcC-----
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVSIEEGEAKSRELN-----  145 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~-----  145 (170)
                      |++++++|+.+..|+..+......++|+++|+||+|+.+                   .+.+..+++..++++.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999999988888766557799999999999965                   57788899999999876     


Q ss_pred             ---------CeEEEEecCCCCChHHHhhcCCCC
Q 030880          146 ---------VMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       146 ---------~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                               +.|++|||++|.||+++|..+++.
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~  188 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNL  188 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHH
Confidence                     689999999999999999998754

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.6e-36  Score=197.78  Aligned_cols=157  Identities=31%  Similarity=0.598  Sum_probs=137.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||+++++.+.+...+.++.+.+.........+..+.+.+|||+|++++..++..+++.+|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777888877777776667778899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+..... +.|+++++||+|+.. .... .+..++++..++.++++||++|.|++++|++|++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHH
Confidence            99999999999999999988764 899999999999863 3333 34556777778899999999999999999998754

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=100.00  E-value=3.3e-36  Score=196.41  Aligned_cols=159  Identities=31%  Similarity=0.535  Sum_probs=139.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|++|+|||||++++.++.+...+.++.+ +.......+++..+.+.+||++|++++..++..++++++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999988777777765 33455566778888899999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+.+... .+.|+++|+||+|+.+ ......++..+++..+++++++|+++|.|++++|++|+
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  158 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV  158 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988877653 5799999999999865 45567788888888899999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       159 ~~  160 (162)
T cd04138         159 RE  160 (162)
T ss_pred             HH
Confidence            64

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>PLN03108 Rab family protein; Provisional

Probab=100.00  E-value=3.7e-36  Score=203.73  Aligned_cols=162  Identities=35%  Similarity=0.698  Sum_probs=147.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+..+.+.+||++|++.+...+..+++++|+++
T Consensus         4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v   83 (210)
T PLN03108          4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL   83 (210)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            35689999999999999999999999887777788877777777778888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++++||+|+.+.+.+..+++.++++..++.++++|++++.|++++|.++
T Consensus        84 lv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l  163 (210)
T PLN03108         84 LVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKT  163 (210)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998877766789999999999998777788899999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      ++
T Consensus       164 ~~  165 (210)
T PLN03108        164 AA  165 (210)
T ss_pred             HH
Confidence            64

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=100.00  E-value=2.5e-36  Score=197.57  Aligned_cols=159  Identities=36%  Similarity=0.562  Sum_probs=139.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+ +........++..+.+.+||+||++++..++..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999999888777666665 444555667788899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+.+... .+.|+++++||+|+.+.+....+++..+++..+++++++||++|.|++++|++|.+
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            99999999999999888766543 57899999999999776777778888899989999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus       160 ~  160 (164)
T smart00173      160 E  160 (164)
T ss_pred             H
Confidence            4

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=100.00  E-value=4.2e-36  Score=196.43  Aligned_cols=160  Identities=33%  Similarity=0.529  Sum_probs=140.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+ +.........+..+.+.+||+||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            48999999999999999999999887777666665 33344556778788999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+.+.. ..+.|+++++||+|+..+..+..+++.++++..+++++++|+++|.|++++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999887754 36789999999999977777777788899998899999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       161 ~~  162 (164)
T cd04145         161 RV  162 (164)
T ss_pred             Hh
Confidence            54

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd01861 Rab6 Rab6 subfamily

Probab=100.00  E-value=6.8e-36  Score=194.92  Aligned_cols=160  Identities=81%  Similarity=1.168  Sum_probs=145.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||+++++++.+...+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999888777888888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++++|+.+..|+..+......+.|+++++||+|+.+......++...+++..++.++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999999877665679999999999997677777888888888889999999999999999999998765

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>smart00175 RAB Rab subfamily of small GTPases

Probab=100.00  E-value=5.1e-36  Score=195.98  Aligned_cols=160  Identities=45%  Similarity=0.775  Sum_probs=145.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777778777777777777888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++++++.+..|+..+......++|+++++||+|+.....+..+.+..+++..++.++++|+++|.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999888776789999999999997767778888999999999999999999999999999998653

Rab GTPases are implicated in vesicle trafficking.

>cd01860 Rab5_related Rab5-related subfamily

Probab=100.00  E-value=7.7e-36  Score=195.04  Aligned_cols=162  Identities=45%  Similarity=0.785  Sum_probs=146.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||+++++++.+...+.++.+.+.....+..++....+.+||+||++++...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999998776777777667677778888889999999999999998999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++++....|+..+.......+|+++++||+|+.+......++...++...++.++++|+++|.|+.++|++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999998876678999999999998766677788888999999999999999999999999999876


Q ss_pred             CC
Q 030880          169 TV  170 (170)
Q Consensus       169 ~i  170 (170)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            53

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=193.58  Aligned_cols=163  Identities=38%  Similarity=0.696  Sum_probs=149.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ..++++++|++-+|||+|++.+..+++..-.+|+.+.++..+.+.. ++..+++++|||+|++++++..+.|++++-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            4689999999999999999999999999999999999988877654 678899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCe-EEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +|||++|++||+.+..|+.+...+.. +..+ +.+|++|+|+...++++.+|++.+++..|..|+++|+++|.|+++.|.
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~  166 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD  166 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence            99999999999999999999877664 5444 578899999999999999999999999999999999999999999999


Q ss_pred             cCCCCC
Q 030880          165 LHPNTV  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      .|+++|
T Consensus       167 mlaqeI  172 (213)
T KOG0091|consen  167 MLAQEI  172 (213)
T ss_pred             HHHHHH
Confidence            887653

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=9e-38  Score=193.63  Aligned_cols=163  Identities=39%  Similarity=0.652  Sum_probs=153.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      +.-.+|++++|...+|||+|+-++..+++...+.++....+..+.+.+.+....+.||||+|+++|..+-+.|++++|++
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa   89 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA   89 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence            34578999999999999999999999999888778877778888888889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||+++++||+.++.|..+++...+..+-++||+||+|+.+++.++.+++..+++..|+.|+++|++.+.||.++|+.
T Consensus        90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~  169 (218)
T KOG0088|consen   90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES  169 (218)
T ss_pred             EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       170 Lt~  172 (218)
T KOG0088|consen  170 LTA  172 (218)
T ss_pred             HHH
Confidence            743

>cd04134 Rho3 Rho3 subfamily

Probab=100.00  E-value=4e-36  Score=200.70  Aligned_cols=158  Identities=34%  Similarity=0.546  Sum_probs=135.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      .||+++|++|+|||||++++..+.+...+.++....+ ...+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            3799999999999999999999998887777776443 445566777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhcC-CeEEEEecCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELN-VMFIETSAKA  155 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (170)
                      |++++++|+.+. .|+..+.... ++.|+++|+||+|+.+..            .+..+++..+++..+ +.|++|||++
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~-~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  158 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHC-PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL  158 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence            999999999986 5888887654 579999999999996543            345677888888877 6899999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      |.|++++|.+|++.
T Consensus       159 ~~~v~e~f~~l~~~  172 (189)
T cd04134         159 NRGVNEAFTEAARV  172 (189)
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998753

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=100.00  E-value=8.1e-36  Score=196.22  Aligned_cols=161  Identities=37%  Similarity=0.624  Sum_probs=144.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~   87 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+.+.....+..++..+.+.+||++|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999998887778888777777778888888999999999999886 578888999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC---CCChHHHh
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKVCL  163 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  163 (170)
                      |||++++++++.+..|+..+.... ..++|+++|+||+|+....++..+++.++++..++.|+++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999999987764 36799999999999988888888889999999999999999999   99999999


Q ss_pred             hcCCCC
Q 030880          164 MLHPNT  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ..+++.
T Consensus       162 ~~l~~~  167 (170)
T cd04115         162 MTLAHK  167 (170)
T ss_pred             HHHHHH
Confidence            988754

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=100.00  E-value=1.1e-35  Score=201.68  Aligned_cols=158  Identities=22%  Similarity=0.484  Sum_probs=136.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||+.++..+.++..+.|+....+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-TASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            37999999999999999999999999888888887444 45677888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecC
Q 030880           89 YDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAK  154 (170)
Q Consensus        89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~  154 (170)
                      ||++++++|+.+ ..|...+... .++.|++||+||+|+.+.            ..+..+++..++++.++ .|++|||+
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk  158 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR  158 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence            999999999998 4576666444 368999999999998542            13678899999999996 89999999


Q ss_pred             CCCC-hHHHhhcCCC
Q 030880          155 AGFN-IKVCLMLHPN  168 (170)
Q Consensus       155 ~~~~-i~~~~~~l~~  168 (170)
                      ++.+ |+++|+..+.
T Consensus       159 ~~~~~V~~~F~~~~~  173 (222)
T cd04173         159 SSERSVRDVFHVATV  173 (222)
T ss_pred             cCCcCHHHHHHHHHH
Confidence            9985 9999987653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.3e-35  Score=193.65  Aligned_cols=156  Identities=28%  Similarity=0.516  Sum_probs=135.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++..+.+.+.+.++.+.+........++..+.+.+|||+|++++..++..+++++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999887777777666666666777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++.+++.+..|+..+.... ++.|+++++||+|+...   ...+...+++..+++++++|+++|.|++++|+.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~-~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  156 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYR-PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL  156 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999987654 57999999999998432   2345566777778999999999999999999988653

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01873 RhoBTB RhoBTB subfamily

Probab=100.00  E-value=2.2e-35  Score=197.37  Aligned_cols=158  Identities=29%  Similarity=0.361  Sum_probs=129.1

Q ss_pred             ceeEEEEcCCCCCHHHHHH-HHhcCC-----CCCcccceeee-EEEEEE--------EEECCeEEEEEEEeCCCcccccc
Q 030880            9 KYKLVFLGDQSVGKTSIIT-RFMYDK-----FDNTYQATIGI-DFLSKT--------MYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      .+||+++|+.|+|||||+. ++.++.     +...+.|+.+. +.+...        ..+++..+.+.+|||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999995 565443     34455666642 222221        24678889999999999875  3


Q ss_pred             cchhhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-------------------ccccC
Q 030880           74 LIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-------------------KRQVS  133 (170)
Q Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~  133 (170)
                      +...+++++|++++|||+++++||+.+. .|+..+.... ++.|+++|+||+|+.+                   .+.+.
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~  158 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP  158 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence            4566899999999999999999999997 5988887665 5789999999999863                   36788


Q ss_pred             HHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          134 IEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .+++++++++.++.|++|||++|.||+++|+.++++
T Consensus       159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999998764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04142 RRP22 RRP22 subfamily

Probab=100.00  E-value=2.2e-35  Score=197.99  Aligned_cols=159  Identities=25%  Similarity=0.335  Sum_probs=133.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhhhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIRD   81 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~   81 (170)
                      +||+++|.+|+|||||++++.++.+...+.|+.+.+.+...+..++..+.+.+|||||.+.+...        ....+++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999988778888776666666677888899999999997654321        2344789


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCC
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGF  157 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~  157 (170)
                      +|++++|||+++++||+.+..|+..+....   ..++|+++|+||+|+...+.+..+++..++. ..+++|+++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999999887764   3679999999999997666666677777654 568999999999999


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|+.+++
T Consensus       161 ~v~~lf~~i~~  171 (198)
T cd04142         161 HILLLFKELLI  171 (198)
T ss_pred             CHHHHHHHHHH
Confidence            99999998764

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=1.5e-35  Score=198.56  Aligned_cols=152  Identities=28%  Similarity=0.561  Sum_probs=135.3

Q ss_pred             EcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh
Q 030880           15 LGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR   94 (170)
Q Consensus        15 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   94 (170)
                      +|.+|+|||||+++++.+.+...+.++.+.+.....+..++..+++.+||++|+++|..++..+++++|++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999888877888888888877777888899999999999999999999999999999999999999


Q ss_pred             hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           95 QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        95 ~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .||+.+..|+..+.... .++|+++|+||+|+.. +.+..+. ..+++..++.|++|||++|.||+++|.+|++.
T Consensus        81 ~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~  152 (200)
T smart00176       81 VTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARK  152 (200)
T ss_pred             HHHHHHHHHHHHHHHhC-CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999998765 5899999999999854 3344443 46788889999999999999999999998753

Ran is involved in the active transport of proteins through nuclear pores.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=100.00  E-value=2.1e-35  Score=194.92  Aligned_cols=156  Identities=33%  Similarity=0.522  Sum_probs=135.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeC
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   91 (170)
                      |+++|++|+|||||++++..+.+...+.++.. .........++..+.+.+|||||++++..++..+++++|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVF-ENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEE-eeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999998877777665 33445566778888999999999999999999999999999999999


Q ss_pred             CChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880           92 ASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        92 ~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (170)
                      +++++|+.+. .|+..+.... +++|+++|+||+|+.+.            ..+..+++..+++..+. .++++|+++|.
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  158 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFC-PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE  158 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhC-CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999985 5888887654 68999999999998653            23677888999999997 99999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |++++|+.+++.
T Consensus       159 ~v~~lf~~l~~~  170 (174)
T smart00174      159 GVREVFEEAIRA  170 (174)
T ss_pred             CHHHHHHHHHHH
Confidence            999999988653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04123 Rab21 Rab21 subfamily

Probab=100.00  E-value=5e-35  Score=190.84  Aligned_cols=160  Identities=38%  Similarity=0.681  Sum_probs=142.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++.+..++..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999998887666666665666666666777789999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++++++.+..|+.++......++|+++++||+|+.....+..++..++++..++.++++|++++.|++++|++|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988776689999999999998777777788888888899999999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04103 Centaurin_gamma Centaurin gamma

Probab=100.00  E-value=3.9e-35  Score=190.50  Aligned_cols=154  Identities=16%  Similarity=0.321  Sum_probs=130.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|+.|+|||||+.++..+.+...+.++.  ..+...+.+++..+.+.+||++|++.     ..+++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~--~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG--GRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc--cceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            589999999999999999999888776654442  22345677788888999999999874     35678999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhhc
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      |+++++||+++..|+..+..... .+.|+++|+||.|+.  ..+.+..+++++++++. ++.|++|||++|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987764 678999999999985  35677888899999876 589999999999999999999


Q ss_pred             CCCCC
Q 030880          166 HPNTV  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      +++.+
T Consensus       154 ~~~~~  158 (158)
T cd04103         154 AAQKI  158 (158)
T ss_pred             HHhhC
Confidence            88653

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=100.00  E-value=5.1e-35  Score=191.36  Aligned_cols=159  Identities=34%  Similarity=0.560  Sum_probs=139.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +||+++|++|+|||||++++..+  .+...+.++.+.+......... +..+.+.+||+||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999999865  5667777888777766666554 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+..++...++..+....++.++++|+++|.|++++|+.|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL  159 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence            9999999999999999999887765 579999999999997777777777778888888999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       160 ~~~  162 (164)
T cd04101         160 ARA  162 (164)
T ss_pred             HHH
Confidence            764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04177 RSR1 RSR1 subgroup

Probab=100.00  E-value=5.2e-35  Score=192.06  Aligned_cols=160  Identities=34%  Similarity=0.514  Sum_probs=141.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|++|+|||||++++.++.+...+.++.+ .........++..+.+.+||+||+++|..++..++++++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            47999999999999999999999988777777765 34456666788889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHHHhhcC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      ||++++++++....|...+.... ..+.|+++++||.|+.+.+....+++..+++..+ ++++++||++|.|++++|+++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999999887654 3679999999999998777777788888888888 799999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .++
T Consensus       160 ~~~  162 (168)
T cd04177         160 VRQ  162 (168)
T ss_pred             HHH
Confidence            754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04132 Rho4_like Rho4-like subfamily

Probab=100.00  E-value=3e-35  Score=196.31  Aligned_cols=157  Identities=31%  Similarity=0.471  Sum_probs=134.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +||+++|++|+|||||++++.++.+...+.++...++.. .+... +..+.+.+|||||++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999999887777777655433 34444 6778999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc----cccCHHHHHHHHhhcCC-eEEEEecCCCCChHHH
Q 030880           89 YDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVC  162 (170)
Q Consensus        89 ~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  162 (170)
                      ||++++++|+++. .|+..+.... ++.|+++|+||.|+...    ..+..+++.+++...++ .++++|+++|.|++++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  158 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFC-PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV  158 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence            9999999999985 5887776543 67999999999998653    24667889999999998 9999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |+.+++
T Consensus       159 f~~l~~  164 (187)
T cd04132         159 FDTAIE  164 (187)
T ss_pred             HHHHHH
Confidence            998864

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=100.00  E-value=1.4e-34  Score=190.93  Aligned_cols=156  Identities=35%  Similarity=0.521  Sum_probs=135.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +|++++|++|+|||||+.++.++.+...+.++.. +........++..+++.+||+||++++..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            5899999999999999999999888877777653 555556777888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      |++++++|+.+. .|+..+.... ++.|+++++||+|+.+            .+.+..+++..+++..+. .++++||++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~  158 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHN-PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT  158 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999974 6888876543 5799999999999863            345677889999999998 999999999


Q ss_pred             CCChHHHhhcCC
Q 030880          156 GFNIKVCLMLHP  167 (170)
Q Consensus       156 ~~~i~~~~~~l~  167 (170)
                      |.|++++|+.++
T Consensus       159 ~~~v~~lf~~~~  170 (173)
T cd04130         159 QKNLKEVFDTAI  170 (173)
T ss_pred             CCCHHHHHHHHH
Confidence            999999998765

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04118 Rab24 Rab24 subfamily

Probab=100.00  E-value=1.3e-34  Score=194.13  Aligned_cols=158  Identities=36%  Similarity=0.626  Sum_probs=138.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +||+++|++|+|||||++++..+.+.. .+.++.+.++....+..++..+.+.+||++|++++..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988764 5677777667677778888889999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc----cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK----RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      ||++++++++.+..|+..+.... .+.|+++|+||+|+.+.    ..+...++.+++...++.++++|+++|.|++++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  159 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLE-EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQ  159 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcC-CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999887654 57999999999998542    34556778888888899999999999999999999


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|++
T Consensus       160 ~i~~  163 (193)
T cd04118         160 KVAE  163 (193)
T ss_pred             HHHH
Confidence            9875

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04135 Tc10 TC10 subfamily

Probab=100.00  E-value=1.4e-34  Score=191.01  Aligned_cols=159  Identities=28%  Similarity=0.478  Sum_probs=136.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++..+.+...+.++.. +.....+.+++..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777666654 444556677888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      |++++++|+.+. .|+..+... .++.|+++++||+|+.+.            ..+..+++..+++..++ .++++||++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~  158 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT  158 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence            999999999985 577777655 578999999999998543            25667889999999986 899999999


Q ss_pred             CCChHHHhhcCCCCC
Q 030880          156 GFNIKVCLMLHPNTV  170 (170)
Q Consensus       156 ~~~i~~~~~~l~~~i  170 (170)
                      |.|++++|+.+++.+
T Consensus       159 ~~gi~~~f~~~~~~~  173 (174)
T cd04135         159 QKGLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999987653

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04143 Rhes_like Rhes_like subfamily

Probab=100.00  E-value=9.3e-35  Score=200.45  Aligned_cols=158  Identities=28%  Similarity=0.442  Sum_probs=138.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||+++++++.+...+.++.+ +...+.+.+++..+.+.+|||+|++.|..++..++..+|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988877777775 666667778888899999999999999888888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHh---------cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-cCCeEEEEecCCCCCh
Q 030880           90 DVASRQSFLNTSKWIDEVRTE---------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  159 (170)
                      |+++++||+++..|+.++...         ...++|+++|+||+|+.....+..+++.+++.. .++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999999888654         225799999999999976667777888877754 4689999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|++|++
T Consensus       160 ~elf~~L~~  168 (247)
T cd04143         160 DEMFRALFS  168 (247)
T ss_pred             HHHHHHHHH
Confidence            999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=100.00  E-value=4.5e-35  Score=191.81  Aligned_cols=158  Identities=31%  Similarity=0.499  Sum_probs=134.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-cccchhhhcCCcEEEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~~~i~v~   89 (170)
                      ||+++|++|+|||||+++++.+.+...+.++.. ........+++..+.+.+||+||++.+ ......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999998887766666654 333455667788889999999998853 455777899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC-CChHHHhhcC
Q 030880           90 DVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIKVCLMLH  166 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~l  166 (170)
                      |++++++|+.+..|+..+....  ..+.|+++|+||+|+.+.+.+..+++..+++..+++|+++|+++| .|++++|.+|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999998887754  357999999999999777778888899999999999999999999 5999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       160 ~~~  162 (165)
T cd04146         160 CRE  162 (165)
T ss_pred             HHH
Confidence            753

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03118 Rab family protein; Provisional

Probab=100.00  E-value=1.9e-34  Score=195.71  Aligned_cols=162  Identities=38%  Similarity=0.648  Sum_probs=139.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||+++|.++.+. .+.++.+.+.....+..++..+.+.+||+||++++..++..+++++|++
T Consensus        11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~   89 (211)
T PLN03118         11 YDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGI   89 (211)
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            345789999999999999999999988764 4567777677667777788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHH-HHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           86 VVVYDVASRQSFLNTSK-WIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~-~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      ++|||++++++|+.+.. |...+.... ..+.|+++|+||+|+.....+..++...++...++.|+++|++++.|++++|
T Consensus        90 vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~  169 (211)
T PLN03118         90 ILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCF  169 (211)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999876 555555443 2568999999999998777777888888999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       170 ~~l~~  174 (211)
T PLN03118        170 EELAL  174 (211)
T ss_pred             HHHHH
Confidence            99864

>cd01863 Rab18 Rab18 subfamily

Probab=100.00  E-value=3e-34  Score=187.14  Aligned_cols=159  Identities=42%  Similarity=0.710  Sum_probs=140.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999998887666777776666666667777889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+..... .+.|+++++||+|+. ......++...++...+++++++|+++|.|++++|+++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~  159 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE-NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVE  159 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc-ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHH
Confidence            99999999999999999887753 689999999999986 4445667888899999999999999999999999999876


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       160 ~  160 (161)
T cd01863         160 K  160 (161)
T ss_pred             h
Confidence            4

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd00154 Rab Rab family

Probab=100.00  E-value=4e-34  Score=185.66  Aligned_cols=159  Identities=48%  Similarity=0.822  Sum_probs=145.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.....+.++.+.+........++....+.+||+||++.+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988877788888888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |++++++++.+..|+..+........|+++++||+|+..+.....++...++...++.++++|++++.|++++|++|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999999999999999998877678999999999999756667788899999988999999999999999999999864

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04114 Rab30 Rab30 subfamily

Probab=100.00  E-value=4.8e-34  Score=187.57  Aligned_cols=162  Identities=38%  Similarity=0.651  Sum_probs=143.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..++|+++|++|+|||||++++..+.+.+.+.++.+.+.....+.+.+..+.+.+||+||++.+...+..+++.+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            44899999999999999999999888777767777777777777788888899999999999999888999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||++++.+++.+..|+.++......++|+++++||+|+.+...+..+....+.+.....++++|+++|.|++++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999988777666799999999999977777777777788877788999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       166 ~~  167 (169)
T cd04114         166 CR  167 (169)
T ss_pred             HH
Confidence            54

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01862 Rab7 Rab7 subfamily

Probab=100.00  E-value=3.7e-34  Score=188.55  Aligned_cols=159  Identities=41%  Similarity=0.683  Sum_probs=139.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|+++++|
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999887777777776777777778888889999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHHHhh
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~  164 (170)
                      |++++++++....|...+.....    .++|+++++||+|+..+.....++...+++..+ ..++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999999888887755542    379999999999997666667788888888887 7999999999999999999


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      ++.+
T Consensus       161 ~i~~  164 (172)
T cd01862         161 TIAR  164 (172)
T ss_pred             HHHH
Confidence            8865

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04148 RGK RGK subfamily

Probab=100.00  E-value=2.8e-34  Score=195.74  Aligned_cols=158  Identities=34%  Similarity=0.454  Sum_probs=134.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc-CCcEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVV   87 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~   87 (170)
                      +||+++|++|+|||||++++..+.+. ..+.++.+.+.....+.+.+....+.+||++|++.  .....+++ ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999999888775 55556554466667777788889999999999882  23345566 9999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++++|+.+..|+..+..... .+.|+++|+||+|+.+...+..+++.+++...+++++++||+++.|++++|+++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999998877643 679999999999998777788888889999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      +++
T Consensus       159 ~~~  161 (221)
T cd04148         159 VRQ  161 (221)
T ss_pred             HHH
Confidence            754

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01892 Miro2 Miro2 subfamily

Probab=100.00  E-value=2.5e-34  Score=188.86  Aligned_cols=160  Identities=21%  Similarity=0.241  Sum_probs=136.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +.+||+++|.+|+|||||+++++++.+. ..+.++.+..+....+..++..+.+.+||++|++.+..++..+++++|+++
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l   82 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC   82 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence            4589999999999999999999999987 778888876666666777888889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++++.+..|+..+...  .++|+++|+||+|+.+.......+...+++.+++ .++++||++|.|++++|+.
T Consensus        83 lv~d~~~~~s~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          83 LVYDSSDPKSFSYCAEVYKKYFML--GEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEeCCCHHHHHHHHHHHHHhccC--CCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999998888765322  4699999999999965554444556777788887 4699999999999999998


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       161 l~~~  164 (169)
T cd01892         161 LATA  164 (169)
T ss_pred             HHHH
Confidence            8753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2e-36  Score=182.77  Aligned_cols=157  Identities=39%  Similarity=0.733  Sum_probs=145.5

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeC
Q 030880           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        13 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   91 (170)
                      +++|++++|||+|+-++..+.+. .+..++.++++..+.+..++..+++++|||+||++|++....|++.+|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999999988887774 34568888999888899999999999999999999999999999999999999999


Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        92 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .|+.||++.+.|+.++..+....+.+.+++||+|+.+++.+..++++.+++.++++|.++|+++|.|++..|-.|+++
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~  158 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEE  158 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHH
Confidence            999999999999999999888889999999999999999999999999999999999999999999999999877653

>cd00876 Ras Ras family

Probab=100.00  E-value=3e-33  Score=182.05  Aligned_cols=159  Identities=39%  Similarity=0.583  Sum_probs=141.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++|+|||||+++++++.+...+.++.. +.........+..+.+.+||+||++.+...+..+++.+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777666665 5556666677778899999999999998999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ++++++++.+..|+..+..... ..+|+++++||+|+........+++..++...+++++++|++++.|++++|++|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999999988877764 689999999999998767778888999999889999999999999999999999876


Q ss_pred             C
Q 030880          170 V  170 (170)
Q Consensus       170 i  170 (170)
                      |
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            4

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=100.00  E-value=2.6e-33  Score=183.14  Aligned_cols=159  Identities=33%  Similarity=0.554  Sum_probs=138.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++..+.+...+.++.. +........++..+.+.+||+||++.+...+..+++.+++++++|
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999999888776666655 444555667888899999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |++++.++..+..|+..+..... .+.|+++|+||+|+.........+...+++..+++++++|+++|.|++++|+++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999999999988877643 57999999999999765556677788888888999999999999999999999865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus       160 ~  160 (164)
T cd04139         160 E  160 (164)
T ss_pred             H
Confidence            3

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04149 Arf6 Arf6 subfamily

Probab=100.00  E-value=1.9e-33  Score=184.42  Aligned_cols=156  Identities=21%  Similarity=0.342  Sum_probs=125.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||++++..+.+.. +.|+.+.+...  ..  ...+.+.+||+||++++...+..+++++|+++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET--VT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceEE--EE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            456899999999999999999998876643 45666554432  22  24578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++.++++...|+..+.... ..++|+++|+||+|+.+.  +..+++..+..     ..++.++++||++|.|++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999999988887775532 357899999999998543  45566666543     223478999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|+||++.
T Consensus       160 ~~~~~l~~~  168 (168)
T cd04149         160 EGLTWLSSN  168 (168)
T ss_pred             HHHHHHhcC
Confidence            999999763

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.8e-34  Score=174.76  Aligned_cols=160  Identities=35%  Similarity=0.667  Sum_probs=150.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .-+|.+++|+-|+|||+|+.++...++...-..+.+.++..+.+.+.+..+++++|||.|+++|+.....|++++.+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            45799999999999999999999999988888888999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||++.+.++..+..|+...++...++.-+++++||.|+..++.+..+++++++++.|..|.++|+++|+++.+.|-..+
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            99999999999999999999988888888999999999999999999999999999999999999999999999886543

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-35  Score=184.65  Aligned_cols=160  Identities=39%  Similarity=0.641  Sum_probs=144.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE---------CCeEEEEEEEeCCCcccccccchhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL---------EDRTVRLQLWDTAGQERFRSLIPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~D~~g~~~~~~~~~~~   78 (170)
                      .-+|++.+|++|+||||++.++..+++......+.++++..+.+..         .+..+.+++|||+|+++|+++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            3468899999999999999999999999888888888887776544         2346789999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                      ++.+-+++++||+++.+||-++..|+.+++.+. ..+..+++++||+|+.+.+.++.+++.+++.++|++||++||-+|.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            999999999999999999999999999998765 3667799999999999999999999999999999999999999999


Q ss_pred             ChHHHhhcCC
Q 030880          158 NIKVCLMLHP  167 (170)
Q Consensus       158 ~i~~~~~~l~  167 (170)
                      |+.+..+.|.
T Consensus       168 Nv~kave~Ll  177 (219)
T KOG0081|consen  168 NVEKAVELLL  177 (219)
T ss_pred             CHHHHHHHHH
Confidence            9998776653

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=1e-33  Score=188.37  Aligned_cols=160  Identities=37%  Similarity=0.587  Sum_probs=150.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+|++++|.+|+|||+|..++..+.+...|.|+.+ +.+.+...+++..+.+.|+||+|++++..+...+++++|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            468999999999999999999999999999999998 8888999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      ||+++++.||+.+..++..+.+... ..+|+++|+||+|+...+.+..++++.++...+++|+++|++.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999999999955544 668999999999999889999999999999999999999999999999999987


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      ..
T Consensus       161 ~r  162 (196)
T KOG0395|consen  161 VR  162 (196)
T ss_pred             HH
Confidence            54

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=100.00  E-value=9.1e-34  Score=185.35  Aligned_cols=153  Identities=21%  Similarity=0.257  Sum_probs=128.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      .|+++|++|+|||||++++.++.+...+.|+.+...    ..++...+++.+||+||++++..++..+++++|++++|||
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   76 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD   76 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence            379999999999999999999877777777766443    2334556899999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH----HHHHHHHhhcCCeEEEEecCC------CCChH
Q 030880           91 VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKA------GFNIK  160 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i~  160 (170)
                      .+++.++...+.|+..+.... .++|+++|+||+|+.....+..    .++..++++.++.++++|+++      ++|++
T Consensus        77 ~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~  155 (164)
T cd04162          77 SADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVK  155 (164)
T ss_pred             CCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHH
Confidence            999999999999988886544 6899999999999866543321    234666677788999999999      99999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|+.++.
T Consensus       156 ~~~~~~~~  163 (164)
T cd04162         156 DLLSQLIN  163 (164)
T ss_pred             HHHHHHhc
Confidence            99998875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd01870 RhoA_like RhoA-like subfamily

Probab=100.00  E-value=1.2e-32  Score=181.88  Aligned_cols=158  Identities=32%  Similarity=0.535  Sum_probs=133.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      .||+++|++|+|||||++++..+.+...+.++..... ...+..++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            5899999999999999999999988877777765333 345567788889999999999999988888899999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      |++++++++.+. .|+..+.... .++|+++++||+|+.+.            ..+...+++++++..+. .+++|||++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            999999999875 5777776543 57999999999998543            23446778888888875 899999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      |.|++++|++|++.
T Consensus       160 ~~~v~~lf~~l~~~  173 (175)
T cd01870         160 KEGVREVFEMATRA  173 (175)
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999998753

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd00157 Rho Rho (Ras homology) family

Probab=100.00  E-value=2.7e-32  Score=179.49  Aligned_cols=157  Identities=35%  Similarity=0.549  Sum_probs=133.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||+++|.++.+...+.++.. +.........+..+.+.+||+||++++......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988666666654 444555667788899999999999998888888899999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc-----------ccCHHHHHHHHhhcCC-eEEEEecCCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR-----------QVSIEEGEAKSRELNV-MFIETSAKAG  156 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~~  156 (170)
                      |+++++++.... .|+..+.... .+.|+++|+||+|+.+..           .+..+++.+++...+. .++++|+++|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  158 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYC-PNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ  158 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhC-CCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence            999999998864 5776666554 589999999999987554           2357788888888888 9999999999


Q ss_pred             CChHHHhhcCCC
Q 030880          157 FNIKVCLMLHPN  168 (170)
Q Consensus       157 ~~i~~~~~~l~~  168 (170)
                      .|++++|++|++
T Consensus       159 ~gi~~l~~~i~~  170 (171)
T cd00157         159 EGVKEVFEEAIR  170 (171)
T ss_pred             CCHHHHHHHHhh
Confidence            999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=2.8e-32  Score=185.62  Aligned_cols=166  Identities=29%  Similarity=0.575  Sum_probs=144.8

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |.+++....+|++++|++|+|||||+++++.+.+...+.++.+.+.........+..+.+.+||++|++++...+..+++
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            67788889999999999999999999999988888888888888887777777888999999999999999989999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      +++++++|||++++.++..+..|+..+.... .+.|+++++||+|+.+. ... .+...+++..++.++++|+++|.|++
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~  157 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFE  157 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence            9999999999999999999999999987664 57899999999998543 233 23346777788999999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +.|.+|++.
T Consensus       158 ~~f~~ia~~  166 (215)
T PTZ00132        158 KPFLWLARR  166 (215)
T ss_pred             HHHHHHHHH
Confidence            999988753

>cd04129 Rho2 Rho2 subfamily

Probab=100.00  E-value=1.9e-32  Score=182.67  Aligned_cols=157  Identities=32%  Similarity=0.550  Sum_probs=132.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      .|++++|++|+|||||++++..+.+...+.++.. +.........+....+.+||++|++.+......+++++|+++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVF-ENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCccc-ceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998887766666554 333345556777788999999999988877777889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC----------ccccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE----------KRQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (170)
                      |++++++++.+. .|+..+.... ++.|+++|+||+|+.+          .+.+..+++..++++.+. .|++|||++|.
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYC-PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            999999999986 5888887655 5699999999999854          234556788899999985 89999999999


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|+++++
T Consensus       160 ~v~~~f~~l~~  170 (187)
T cd04129         160 GVDDVFEAATR  170 (187)
T ss_pred             CHHHHHHHHHH
Confidence            99999999864

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=100.00  E-value=3.2e-33  Score=181.93  Aligned_cols=152  Identities=23%  Similarity=0.361  Sum_probs=118.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|.+|+|||||++++..+.+. .+.|+.+....  ...  ...+.+.+||+||++++...+..+++++|++++||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999877765 35666654432  222  24578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHH-HHHH----hhcCCeEEEEecCCCCChHHHh
Q 030880           90 DVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      |++++.+++....|+..+... .....|+++++||+|+.+..  ...+. ..+.    ...++.++++||++|.|++++|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~  153 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL  153 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence            999999999998888776543 22568999999999985432  22232 2222    1234467899999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       154 ~~l~~  158 (159)
T cd04150         154 DWLSN  158 (159)
T ss_pred             HHHhc
Confidence            99875

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=100.00  E-value=2.7e-33  Score=184.94  Aligned_cols=156  Identities=22%  Similarity=0.343  Sum_probs=122.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||++++..+.+. .+.|+.+.+...  ...  ..+.+.+||+||++++..++..+++++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            34699999999999999999999877764 356666655432  222  4578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||+++++++++...|+..+.... ..+.|++|++||+|+.+..  ..++..+..     ....+.++++||++|.|++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~  163 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY  163 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence            9999999999999988888875532 3578999999999986432  223332222     1223467789999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|+||.+.
T Consensus       164 e~~~~l~~~  172 (175)
T smart00177      164 EGLTWLSNN  172 (175)
T ss_pred             HHHHHHHHH
Confidence            999998754

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04158 ARD1 ARD1 subfamily

Probab=100.00  E-value=1.1e-32  Score=181.08  Aligned_cols=152  Identities=23%  Similarity=0.380  Sum_probs=123.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++|+|||||++++.++.+.. +.++.+.....  .  ....+.+.+||+||++++...+..+++++|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE--E--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999999886543 56665544432  2  2345789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC------CeEEEEecCCCCChHHHh
Q 030880           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN------VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~  163 (170)
                      .++++++++...|+..+.... ..+.|++|++||+|+.+  .+..+++.+++...+      +.++++||++|.|++++|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f  153 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL  153 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence            999999999999988886543 25689999999999854  355666766654322      378899999999999999


Q ss_pred             hcCCCC
Q 030880          164 MLHPNT  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      +||+++
T Consensus       154 ~~l~~~  159 (169)
T cd04158         154 DWLSRQ  159 (169)
T ss_pred             HHHHHH
Confidence            999764

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04147 Ras_dva Ras-dva subfamily

Probab=100.00  E-value=2.7e-32  Score=183.51  Aligned_cols=158  Identities=32%  Similarity=0.487  Sum_probs=131.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++|+|||||+++++.+.+...+.++.. +.......+.+..+.+.+||+||+..+..++..+++++|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999988776666654 4444556667777899999999999998888899999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCC-ccccCHHHHHHHHh-hcCCeEEEEecCCCCChHHHhhcCC
Q 030880           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ++++.+++.+..|+..+..... .+.|+++++||+|+.. ...+..++..+... ..++.++++|+++|.|++++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999988877654 5799999999999865 34455555554443 4567899999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       160 ~~  161 (198)
T cd04147         160 RQ  161 (198)
T ss_pred             HH
Confidence            54

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=100.00  E-value=2.6e-32  Score=181.12  Aligned_cols=159  Identities=35%  Similarity=0.494  Sum_probs=136.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      .||+++|++|+|||||++++..+.+...+.++..... .......+..+.+.+||+||++++...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999999887766666654333 444556777788999999999999989999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |+++.++++.+..|+..+.+... .+.|+++++||+|+.....+..++...+++..+.+++++|++++.|++++|+++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999888877543 67899999999999766666777778888888899999999999999999999864


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (180)
T cd04137         161 E  161 (180)
T ss_pred             H
Confidence            3

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN00223 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=1.7e-32  Score=181.84  Aligned_cols=156  Identities=22%  Similarity=0.341  Sum_probs=121.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|+++||||||++++..+.+. .+.|+.+.+..  ..  ....+.+.+||+||++++..++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TV--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EE--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999987765 34666664442  22  234578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-----CCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~  160 (170)
                      +|||+++++++++...++..+.... ..+.|++|++||+|+....  ..++......-.     .+.++++||++|+|+.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~  167 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY  167 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCHH
Confidence            9999999999999888877765432 2579999999999986543  333333322111     1246689999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|+||++.
T Consensus       168 e~~~~l~~~  176 (181)
T PLN00223        168 EGLDWLSNN  176 (181)
T ss_pred             HHHHHHHHH
Confidence            999999764

>cd04154 Arl2 Arl2 subfamily

Probab=100.00  E-value=3.2e-32  Score=179.61  Aligned_cols=156  Identities=22%  Similarity=0.344  Sum_probs=124.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....++|+++|++|+|||||++++.+... ..+.++.+...  ..+...  .+.+.+||+||++.+..++..+++++|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLGFQI--KTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            45678999999999999999999998754 34455554332  223333  47899999999999888999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCCh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i  159 (170)
                      ++|||++++.++.....|+..+... ...+.|+++++||+|+.+..  ..+++..+..     ..+++++++||++|.|+
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  163 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL  163 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence            9999999999999988888877543 23679999999999986543  4455555543     34578999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|+++++
T Consensus       164 ~~l~~~l~~  172 (173)
T cd04154         164 LQGIDWLVD  172 (173)
T ss_pred             HHHHHHHhc
Confidence            999999875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=100.00  E-value=9.6e-33  Score=183.24  Aligned_cols=156  Identities=21%  Similarity=0.344  Sum_probs=120.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||++++..+.+.. +.|+.+.....  .  ....+.+.+||+||++++...+..+++++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--V--EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            346899999999999999999998877654 45666544432  2  234578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++....++..+... ...++|++|++||.|+.+..  ...+.....     ...++.++++||++|.|++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            999999999999988877776443 22568999999999985432  223322221     1223467799999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       168 e~~~~l~~~  176 (182)
T PTZ00133        168 EGLDWLSAN  176 (182)
T ss_pred             HHHHHHHHH
Confidence            999998754

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=100.00  E-value=4.7e-32  Score=180.20  Aligned_cols=159  Identities=24%  Similarity=0.337  Sum_probs=126.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ..+||+++|++|+|||||++++..+.+... .++.+.+........ ++..+.+.+|||||++++..++..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999998877644 566555554444433 346789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh------hcCCeEEEEecCCCCCh
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFNI  159 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i  159 (170)
                      +|||++++++++....|+.++.... ..+.|+++++||+|+.+.  ...++...+..      ..++.++++||++|+|+
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi  158 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL  158 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence            9999999999999988888876643 357999999999998532  33344444432      11356899999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       159 ~~l~~~l~~~  168 (183)
T cd04152         159 QEGLEKLYEM  168 (183)
T ss_pred             HHHHHHHHHH
Confidence            9999998653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=100.00  E-value=3.2e-31  Score=177.55  Aligned_cols=149  Identities=21%  Similarity=0.336  Sum_probs=126.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-----CeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.+...+.....     +..+.+.+||++|+++|..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999888888888766666655553     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-------------------CCCCeEEEEEeCCCCCCccccCHH----HHHHHH
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-------------------GSDVIIVLVGNKTDLVEKRQVSIE----EGEAKS  141 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------------~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~  141 (170)
                      +|+|||+++++||+.+..|+.++....                   ..++|++||+||+|+.+++.+...    ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            999999999999999999999997642                   247899999999999766544433    355678


Q ss_pred             hhcCCeEEEEecCCCCC
Q 030880          142 RELNVMFIETSAKAGFN  158 (170)
Q Consensus       142 ~~~~~~~~~~s~~~~~~  158 (170)
                      ++.+++.++.++.+...
T Consensus       161 ~~~~~~~i~~~c~~~~~  177 (202)
T cd04102         161 EQGNAEEINLNCTNGRL  177 (202)
T ss_pred             HhcCCceEEEecCCccc
Confidence            88999999999987653

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.98  E-value=3.5e-32  Score=177.56  Aligned_cols=159  Identities=33%  Similarity=0.525  Sum_probs=144.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ...+|++++|+..+|||+|+..+..+.++..|.|+.. +.+...+.++ +..+.+.+|||+|+++|+.++...+.++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3468999999999999999999999999999999986 8888888895 9999999999999999999998899999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEE
Q 030880           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++||++.+++||+++ .+|+.++..++ +++|+++||+|.|+.+.            ..+..+++...+++.|+ .|++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec  159 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC  159 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence            999999999999995 77999998887 89999999999999732            35778999999999995 89999


Q ss_pred             ecCCCCChHHHhhcCC
Q 030880          152 SAKAGFNIKVCLMLHP  167 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~  167 (170)
                      |++++.|++++|+..+
T Consensus       160 Sa~tq~~v~~vF~~a~  175 (198)
T KOG0393|consen  160 SALTQKGVKEVFDEAI  175 (198)
T ss_pred             hhhhhCCcHHHHHHHH
Confidence            9999999999998643

>cd01893 Miro1 Miro1 subfamily

Probab=99.98  E-value=4.1e-31  Score=173.23  Aligned_cols=157  Identities=25%  Similarity=0.367  Sum_probs=122.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|.+|+|||||++++..+.+...+.++.  +.........+..+++.+||+||.+++...+..+++.+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL--PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc--cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            489999999999999999999988865533322  222333445567789999999999888877888889999999999


Q ss_pred             eCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhhcC--CeEEEEecCCCCChHHHhh
Q 030880           90 DVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELN--VMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        90 d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~  164 (170)
                      |++++++++.+. .|+..+.... .+.|+++|+||+|+.+....  ..++....+..++  ..++++||++|.|++++|+
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~  157 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY  157 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence            999999999975 6777776654 57999999999999665432  1233334444443  3899999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .+.+.
T Consensus       158 ~~~~~  162 (166)
T cd01893         158 YAQKA  162 (166)
T ss_pred             HHHHH
Confidence            87654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.98  E-value=1.2e-31  Score=174.96  Aligned_cols=153  Identities=18%  Similarity=0.260  Sum_probs=119.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +|+++|++|+|||||++++.++.. ...+.|+.+.....  .  ....+.+.+||+||++++..++..+++++|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--F--EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--E--EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999998753 44555665543322  2  234578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChHH
Q 030880           90 DVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~  161 (170)
                      |++++.++.....|+..+....   ..++|+++++||+|+.+..  ...+......     ..++.++++||++|.|+++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~  154 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNALTGEGLDE  154 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence            9999999999888888775542   2579999999999986532  2222222211     1234689999999999999


Q ss_pred             HhhcCCCC
Q 030880          162 CLMLHPNT  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|.++
T Consensus       155 ~~~~l~~~  162 (162)
T cd04157         155 GVQWLQAQ  162 (162)
T ss_pred             HHHHHhcC
Confidence            99999764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.98  E-value=1.3e-31  Score=175.70  Aligned_cols=154  Identities=19%  Similarity=0.199  Sum_probs=120.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      +|+++|++|+|||||++++.++ +...+.|+.+...  ..+..  ..+++.+||+||++++..++..+++++|++++|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999999976 5556667665432  23333  45789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccC----HHHHHHHHhhc--CCeEEEEecCCC------C
Q 030880           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSREL--NVMFIETSAKAG------F  157 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~--~~~~~~~s~~~~------~  157 (170)
                      ++++.+++++..|+..+.+... .++|+++++||+|+.+.....    ...+..++.+.  ++.+++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            9999999999999998876543 579999999999986544211    11122333333  357888999998      8


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |+++.|+||.++
T Consensus       156 g~~~~~~wl~~~  167 (167)
T cd04161         156 SIVEGLRWLLAA  167 (167)
T ss_pred             CHHHHHHHHhcC
Confidence            999999999763

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.98  E-value=8e-31  Score=173.05  Aligned_cols=154  Identities=22%  Similarity=0.376  Sum_probs=121.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..++|+++|++|+|||||++++..+.+.. +.++.+.+..  ....  ....+.+||+||++.+...+..+++++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVY--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEE--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999999887764 3555554332  2222  35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHH-HHHH----hhcCCeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEG-EAKS----RELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~----~~~~~~~~~~s~~~~~~i~~  161 (170)
                      |+|.++++++.....++..+..... .+.|+++++||+|+...  ...++. ..+.    +..+++++++||++|.|+++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e  166 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE  166 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence            9999999999888887777755432 57999999999998542  233332 2222    23456899999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|++
T Consensus       167 ~~~~l~~  173 (174)
T cd04153         167 GLDWIAS  173 (174)
T ss_pred             HHHHHhc
Confidence            9999976

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.97  E-value=1e-30  Score=170.34  Aligned_cols=152  Identities=22%  Similarity=0.351  Sum_probs=118.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      +|+++|++|+|||||++++..+.+... .++.+.+..  .+.. +..+.+.+||+||++.+...+..+++++|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999999877533 455543332  2222 345789999999999998889999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHH------HHhhcCCeEEEEecCCCCChHHHh
Q 030880           91 VASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEA------KSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      ++++.++.....|+..+.+... .+.|+++++||+|+....  ...+...      ++...++.++++||++|+|++++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~  154 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF  154 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence            9999999999888888765432 579999999999985422  2233322      222234579999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|++
T Consensus       155 ~~i~~  159 (160)
T cd04156         155 RKLAS  159 (160)
T ss_pred             HHHhc
Confidence            99875

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd00879 Sar1 Sar1 subfamily

Probab=99.97  E-value=2.1e-30  Score=173.37  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=125.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ....+|+++|++|+|||||++++.++.+. .+.++.+...  ..+...  ...+.+||+||++.+...+..+++++|+++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45789999999999999999999987753 4455544332  233333  367899999999988888899999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhh----------------cCCeEE
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----------------LNVMFI  149 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~  149 (170)
                      +|+|.++.++++....|+..+..... .+.|+++++||+|+..  .+..++.+.....                ..+.++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF  169 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence            99999999999888888888765433 6799999999999854  3455666666542                234789


Q ss_pred             EEecCCCCChHHHhhcCCCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      +|||++|+|++++|+||++.+
T Consensus       170 ~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         170 MCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EeEecCCCChHHHHHHHHhhC
Confidence            999999999999999998764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.97  E-value=2.3e-30  Score=169.80  Aligned_cols=153  Identities=23%  Similarity=0.378  Sum_probs=118.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ||+++|++|+|||||++++.....      ...+.++.+....  .+..+  ...+.+||+||++.+..++..+++++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG--TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            689999999999999999986432      2223344333332  23333  5789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-------cCCeEEEEecCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-------LNVMFIETSAKAG  156 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~  156 (170)
                      +++|+|+++++++.....|+..+.+.. ..++|+++++||+|+.+.  ....+...+...       .+++++++||++|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  154 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG  154 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence            999999999999999888888876543 367999999999998543  334445444432       2458999999999


Q ss_pred             CChHHHhhcCCCC
Q 030880          157 FNIKVCLMLHPNT  169 (170)
Q Consensus       157 ~~i~~~~~~l~~~  169 (170)
                      .|++++++||+++
T Consensus       155 ~gv~e~~~~l~~~  167 (167)
T cd04160         155 TGVREGIEWLVER  167 (167)
T ss_pred             cCHHHHHHHHhcC
Confidence            9999999999763

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04151 Arl1 Arl1 subfamily

Probab=99.97  E-value=5.8e-31  Score=171.19  Aligned_cols=152  Identities=22%  Similarity=0.331  Sum_probs=115.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++++|||||++++..+.+.. +.++.+.+..  ..  ......+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TV--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EE--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999998877653 3455443332  22  2345789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHHHhh
Q 030880           91 VASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      ++++.++.....++..+.+. ...+.|+++++||+|+.++.  ...+.....     ...+.+++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  153 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence            99998888776666655332 23579999999999986443  222222211     12235799999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|+++
T Consensus       154 ~l~~~  158 (158)
T cd04151         154 WLVNT  158 (158)
T ss_pred             HHhcC
Confidence            99864

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=2e-30  Score=170.97  Aligned_cols=158  Identities=24%  Similarity=0.366  Sum_probs=127.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ..+.+||+++|+.|+|||||++++..+... ...||.+.....  +..  ..+.+.+||.+|+..++..|..|++++|++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~--i~~--~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEE--IKY--KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEE--EEE--TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccce--eee--CcEEEEEEeccccccccccceeecccccee
Confidence            367899999999999999999999976544 356666655433  333  346899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHh------hcCCeEEEEecCCCCC
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR------ELNVMFIETSAKAGFN  158 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~  158 (170)
                      |+|+|.++++.+.+....+..+..... .++|++|++||+|+.+.  ...++......      ...+.++.||+.+|+|
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G  163 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG  163 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence            999999999999999988888766543 68999999999998543  34454544332      2345799999999999


Q ss_pred             hHHHhhcCCCCC
Q 030880          159 IKVCLMLHPNTV  170 (170)
Q Consensus       159 i~~~~~~l~~~i  170 (170)
                      +.+.++||.++|
T Consensus       164 v~e~l~WL~~~~  175 (175)
T PF00025_consen  164 VDEGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC
Confidence            999999998753

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PLN00023 GTP-binding protein; Provisional

Probab=99.97  E-value=8.6e-30  Score=178.57  Aligned_cols=142  Identities=21%  Similarity=0.371  Sum_probs=122.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-------------CeEEEEEEEeCCCcccc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-------------DRTVRLQLWDTAGQERF   71 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i~D~~g~~~~   71 (170)
                      ++...+||+++|+.|+|||||++++..+.+...+.++.+.++..+.+.++             +..+.+.|||++|+++|
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            45677999999999999999999999998888888888877766655553             24688999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC------------CCCeEEEEEeCCCCCCcc---c---cC
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG------------SDVIIVLVGNKTDLVEKR---Q---VS  133 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~---~---~~  133 (170)
                      ..++..++++++++|+|||++++++++.+..|+..+.....            .++|++||+||+|+....   .   +.
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            99999999999999999999999999999999999987631            358999999999996542   2   35


Q ss_pred             HHHHHHHHhhcCC
Q 030880          134 IEEGEAKSRELNV  146 (170)
Q Consensus       134 ~~~~~~~~~~~~~  146 (170)
                      .+++++|+++.++
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            7899999999885

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.97  E-value=2.4e-30  Score=168.27  Aligned_cols=152  Identities=22%  Similarity=0.316  Sum_probs=120.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|.+|+|||||++++.++.. ..+.++.+.....  ...  ....+.+||+||++.+...+..+++++|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVET--VEY--KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            689999999999999999998873 3344554433322  222  24789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChHHHhh
Q 030880           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +++++++.....|+..+.... ..+.|+++++||+|+....  ..++..+...     ...++++++|+++|.|++++|+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~  153 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD  153 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence            999999999988888776643 3679999999999986543  2333333332     2346899999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|..+
T Consensus       154 ~l~~~  158 (158)
T cd00878         154 WLLQQ  158 (158)
T ss_pred             HHhhC
Confidence            98753

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PTZ00099 rab6; Provisional

Probab=99.97  E-value=7.3e-30  Score=168.14  Aligned_cols=138  Identities=67%  Similarity=1.021  Sum_probs=125.0

Q ss_pred             CCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc
Q 030880           32 DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER  111 (170)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  111 (170)
                      +.+.+.+.++.+.++..+.+..++..+.+.||||+|++++..++..+++++|++++|||++++++|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45667788899888888888888999999999999999999999999999999999999999999999999999987766


Q ss_pred             CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          112 GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       112 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ..++|+++|+||+|+.+...+..+++..++..+++.|+++||++|.|++++|++|++.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~  140 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAK  140 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999997767788889999999999999999999999999999998753

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.97  E-value=2e-29  Score=167.70  Aligned_cols=157  Identities=17%  Similarity=0.231  Sum_probs=122.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...++|+++|++|+|||||++++.++.+. .+.|+.+...  .....  .++++.+||+||++.+...+..+++++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTS--EELAI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccce--EEEEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999999987654 2344443322  22222  3478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh------------cCCeEEEEec
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  153 (170)
                      +|+|+++++++.....++..+.+.. ..+.|+++++||+|+..  .++.+++.....-            ....+++||+
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa  167 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV  167 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence            9999999999999888888776532 25789999999999853  3455555544311            2346999999


Q ss_pred             CCCCChHHHhhcCCCCC
Q 030880          154 KAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~~i  170 (170)
                      ++|.|++++++||.+.+
T Consensus       168 ~~~~g~~~~~~wl~~~~  184 (184)
T smart00178      168 VRRMGYGEGFKWLSQYI  184 (184)
T ss_pred             ccCCChHHHHHHHHhhC
Confidence            99999999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.96  E-value=1.5e-28  Score=153.29  Aligned_cols=158  Identities=19%  Similarity=0.306  Sum_probs=127.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ...+++|+++|..++||||++++|.+... +...|+.++......    ...+.+++||.+|+...++.|++|+..+|++
T Consensus        13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~pt~gf~Iktl~----~~~~~L~iwDvGGq~~lr~~W~nYfestdgl   87 (185)
T KOG0073|consen   13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISPTLGFQIKTLE----YKGYTLNIWDVGGQKTLRSYWKNYFESTDGL   87 (185)
T ss_pred             hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCCccceeeEEEE----ecceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence            34589999999999999999999998773 344566655444332    3558899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccC----HHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVS----IEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      |+|+|.+++..+++....+..+..... .+.|++|++||.|+..+-...    ......+++...++++.||+.+|+++.
T Consensus        88 IwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~  167 (185)
T KOG0073|consen   88 IWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLL  167 (185)
T ss_pred             EEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHH
Confidence            999999999999998888888766443 678999999999997442211    122345556677899999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      +.++||+.
T Consensus       168 ~gidWL~~  175 (185)
T KOG0073|consen  168 EGIDWLCD  175 (185)
T ss_pred             HHHHHHHH
Confidence            99999864

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-31  Score=167.97  Aligned_cols=160  Identities=36%  Similarity=0.583  Sum_probs=151.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .-+|++++|..++||||+|++++.+.+...+..+.+.++....+.+....+++.+||++|+++++.....|++++.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            45899999999999999999999999998888999999988888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||+-++..||+....|++.+.... ..+|.++|-||+|+.+..++...+++.+++.+.+.++-+|++...|+..+|.+|+
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            999999999999999999998776 6799999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       178 e  178 (246)
T KOG4252|consen  178 E  178 (246)
T ss_pred             H
Confidence            4

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.96  E-value=2.5e-28  Score=158.46  Aligned_cols=152  Identities=24%  Similarity=0.373  Sum_probs=120.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      .|+++|++|+|||||++++.+..+...+.++.+.....  ...  ....+.+||+||++.+...+..+++.+|++++|+|
T Consensus         1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d   76 (159)
T cd04159           1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD   76 (159)
T ss_pred             CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence            37899999999999999999998887777776655443  222  23789999999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHHHhh
Q 030880           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      ++++.++.....|+..+.... ..+.|+++++||+|+.+...  ..+.....     ...+++++++|+++|.|++++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  154 (159)
T cd04159          77 AADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD  154 (159)
T ss_pred             CCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence            999999988888777765432 25789999999999865432  22222111     12346889999999999999999


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|.+
T Consensus       155 ~l~~  158 (159)
T cd04159         155 WLIK  158 (159)
T ss_pred             HHhh
Confidence            9875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01890 LepA LepA subfamily

Probab=99.96  E-value=4.6e-28  Score=160.53  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=111.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC-------CCCcccc------eeeeEEEEEEE--EE---CCeEEEEEEEeCCCccccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK-------FDNTYQA------TIGIDFLSKTM--YL---EDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~------~~~~~~~~~~~--~~---~~~~~~~~i~D~~g~~~~~   72 (170)
                      +|+++|.+++|||||+++|++..       +...+.+      ..+.+......  ..   ++..+.+.+|||||++++.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            78999999999999999998742       1111111      11122222221  12   5667889999999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---eEE
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MFI  149 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~  149 (170)
                      ..+..+++.+|++++|||++++.++.....|....    ..++|+++++||+|+.+..  ......++++.+++   .++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~  155 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI  155 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence            99999999999999999999876665555553322    2468999999999985432  12233455566665   489


Q ss_pred             EEecCCCCChHHHhhcCCCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      ++|+++|.|++++|++|.+.+
T Consensus       156 ~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         156 LVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EeeccCCCCHHHHHHHHHhhC
Confidence            999999999999999987653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd04155 Arl3 Arl3 subfamily

Probab=99.96  E-value=1.5e-27  Score=157.26  Aligned_cols=154  Identities=22%  Similarity=0.341  Sum_probs=116.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....++|+++|++|+|||||++++.+.... .+.++.+....  .+...  +..+.+||+||+..+...+..+++++|++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~~--~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNIK--TVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            345799999999999999999999987543 23444443322  22233  46789999999998888888999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--------CeEEEEecCCC
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAG  156 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~  156 (170)
                      ++|+|+++..++.....++..+.... ..++|+++++||+|+.+..  ..++.   .+..+        ..++++||++|
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~i---~~~l~~~~~~~~~~~~~~~Sa~~~  160 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAEEI---AEALNLHDLRDRTWHIQACSAKTG  160 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHHHH---HHHcCCcccCCCeEEEEEeECCCC
Confidence            99999999999988887777665432 3579999999999985432  12222   22222        24789999999


Q ss_pred             CChHHHhhcCCCC
Q 030880          157 FNIKVCLMLHPNT  169 (170)
Q Consensus       157 ~~i~~~~~~l~~~  169 (170)
                      +|++++|+||+++
T Consensus       161 ~gi~~~~~~l~~~  173 (173)
T cd04155         161 EGLQEGMNWVCKN  173 (173)
T ss_pred             CCHHHHHHHHhcC
Confidence            9999999999864

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd01898 Obg Obg subfamily

Probab=99.96  E-value=6.6e-28  Score=158.51  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=111.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccchhh---hcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSY---IRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~---~~~~~   83 (170)
                      +|+++|.+|+|||||+++|.+........+..+.+.........+ ...+.+|||||..+    ...+...+   ++.+|
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d   80 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR   80 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence            689999999999999999997654211112222222111222222 24799999999632    22233333   34699


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhh-cCCeEEEEecCCCCCh
Q 030880           84 VAVVVYDVASR-QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (170)
Q Consensus        84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  159 (170)
                      ++++|+|++++ ++++.+..|...+.....  .++|+++|+||+|+.+.... ......+... .+..++++|++++.|+
T Consensus        81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            99999999999 789888888888876542  46899999999998655443 3344455555 3678999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.96  E-value=3.6e-27  Score=152.76  Aligned_cols=158  Identities=27%  Similarity=0.407  Sum_probs=128.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|.+|+|||||++++..+.....+.++.+.+.........+..+.+.+||+||+..+...+..+.++++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999999987777777777777776666777668899999999999998999889999999999


Q ss_pred             EeCCCh-hhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           89 YDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        89 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|.... .++.... .|...+......+.|+++++||+|+.... ........+.......++++|+++|.|+.++|++|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            999877 6776654 66666666554478999999999996544 33333444444445689999999999999999987


Q ss_pred             C
Q 030880          167 P  167 (170)
Q Consensus       167 ~  167 (170)
                      .
T Consensus       160 ~  160 (161)
T TIGR00231       160 E  160 (161)
T ss_pred             h
Confidence            4

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.96  E-value=8.4e-28  Score=157.73  Aligned_cols=154  Identities=16%  Similarity=0.161  Sum_probs=107.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------cchhhhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPSYIRD   81 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~~~~~   81 (170)
                      +|+++|.+|+|||||++++.++.......+..+.+......  ......+.+|||||+.....         ........
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            79999999999999999999887643222222222222222  22357899999999742110         00111123


Q ss_pred             CcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           82 SSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      +|++++|+|++++.++  +....|+..+.... .+.|+++|+||+|+.....+.  +...+....+.+++++||++|.|+
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~gi  156 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEGV  156 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCCH
Confidence            6899999999987653  55667777776543 479999999999996544332  245555556789999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|+++.+.
T Consensus       157 ~~l~~~l~~~  166 (168)
T cd01897         157 DEVKNKACEL  166 (168)
T ss_pred             HHHHHHHHHH
Confidence            9999998754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01878 HflX HflX subfamily

Probab=99.96  E-value=1.1e-27  Score=161.81  Aligned_cols=157  Identities=18%  Similarity=0.156  Sum_probs=113.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPS   77 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   77 (170)
                      ...++|+++|++|+|||||++++.+........+..+.+.........+. ..+.+|||||....         ... ..
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence            34579999999999999999999987643322222333333333333332 37999999997321         111 12


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                      .+.++|++++|+|++++.++.....|...+......+.|+++|+||+|+.+.....     ......+.+++++|++++.
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCC
Confidence            35689999999999999888887777777665554678999999999986543221     3445566789999999999


Q ss_pred             ChHHHhhcCCCCC
Q 030880          158 NIKVCLMLHPNTV  170 (170)
Q Consensus       158 ~i~~~~~~l~~~i  170 (170)
                      |+++++++|.+.+
T Consensus       192 gi~~l~~~L~~~~  204 (204)
T cd01878         192 GLDELLEAIEELL  204 (204)
T ss_pred             CHHHHHHHHHhhC
Confidence            9999999987653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.95  E-value=3e-27  Score=169.02  Aligned_cols=159  Identities=14%  Similarity=0.065  Sum_probs=117.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDS   82 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~   82 (170)
                      ..|.++|.|++|||||++++..........+.++.......+... ....+.+||+||..+-       ...+...++++
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            368999999999999999999765332222333334333333332 3347899999996431       11223346689


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      +++++|+|+++.++++....|..++..+..  .++|+++|+||+|+.+.......+...+....+.+++++||++++|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            999999999988889999999999877643  478999999999997655444444555566677899999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       318 eL~~~L~~~  326 (335)
T PRK12299        318 ELLRALWEL  326 (335)
T ss_pred             HHHHHHHHH
Confidence            999998653

>cd04171 SelB SelB subfamily

Probab=99.95  E-value=5.5e-27  Score=153.15  Aligned_cols=152  Identities=18%  Similarity=0.105  Sum_probs=104.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +.|+++|.+++|||||+++|.+..   +.....+..+.+.......... ...+.+|||||++++......+++++|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            368999999999999999998642   2222233333333333333332 458999999999988776777788999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhh---cCCeEEEEecCCCCC
Q 030880           87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRE---LNVMFIETSAKAGFN  158 (170)
Q Consensus        87 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~  158 (170)
                      +|+|+++   +++.+.+.    .+...  ...|+++++||+|+.+...  ...++..+..+.   .+.+++++|+++|.|
T Consensus        80 ~V~d~~~~~~~~~~~~~~----~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  153 (164)
T cd04171          80 LVVAADEGIMPQTREHLE----ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG  153 (164)
T ss_pred             EEEECCCCccHhHHHHHH----HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcC
Confidence            9999986   33333222    22111  1248999999999965421  122344444444   467999999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|+.+.+
T Consensus       154 v~~l~~~l~~  163 (164)
T cd04171         154 IEELKEYLDE  163 (164)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.95  E-value=9.7e-27  Score=158.85  Aligned_cols=160  Identities=40%  Similarity=0.574  Sum_probs=130.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|+.|+|||||++++..+.+...+.++.+...........+..+++.+||++|+++++.++..++.+++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            34899999999999999999999999998888887767766666666668899999999999999999999999999999


Q ss_pred             EEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhc---CCeEEEE
Q 030880           88 VYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSREL---NVMFIET  151 (170)
Q Consensus        88 v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~---~~~~~~~  151 (170)
                      +||.++. .+.+....|+.++........|+++++||+|+....            ..............   ...++++
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            9999995 455557888888887776679999999999997653            22223223322222   3348999


Q ss_pred             ecC--CCCChHHHhhcCC
Q 030880          152 SAK--AGFNIKVCLMLHP  167 (170)
Q Consensus       152 s~~--~~~~i~~~~~~l~  167 (170)
                      |++  ++.++.++|..+.
T Consensus       164 s~~~~~~~~v~~~~~~~~  181 (219)
T COG1100         164 SAKSLTGPNVNELFKELL  181 (219)
T ss_pred             ecccCCCcCHHHHHHHHH
Confidence            999  9999999988764

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.4e-27  Score=152.46  Aligned_cols=158  Identities=22%  Similarity=0.333  Sum_probs=131.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ...++++|+++|..++||||++.+|.-+..... .||.++.......    .++.+++||.+|+++++..|..|+++.++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence            356789999999999999999999998887755 7888766655544    26899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~  158 (170)
                      +|+|+|.++++.+.+.+..+..+..... .+.|+++.+||.|+..+-  +..++.+..     ......+..|+|.+|+|
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            9999999999999999998888877665 789999999999986543  333333222     23345789999999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      +.+.++||.+.
T Consensus       166 L~egl~wl~~~  176 (181)
T KOG0070|consen  166 LYEGLDWLSNN  176 (181)
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.95  E-value=2.3e-27  Score=151.63  Aligned_cols=134  Identities=19%  Similarity=0.257  Sum_probs=99.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc-----cccccchhhhcCCcEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----RFRSLIPSYIRDSSVA   85 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----~~~~~~~~~~~~~~~~   85 (170)
                      ||+++|++|+|||||++++.++...  +.++.+.+.            .-.+|||||+.     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            7999999999999999999977642  222222111            11689999973     233332 347899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  164 (170)
                      ++|||++++.++.. ..|....      ..|+++++||+|+.+ .....+++.++++..+. +++++|+++|.|++++|+
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  138 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVD  138 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHH
Confidence            99999999988755 2343321      249999999999864 33456677788877776 899999999999999999


Q ss_pred             cCC
Q 030880          165 LHP  167 (170)
Q Consensus       165 ~l~  167 (170)
                      +|+
T Consensus       139 ~l~  141 (142)
T TIGR02528       139 YLN  141 (142)
T ss_pred             HHh
Confidence            885

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.95  E-value=5.4e-26  Score=146.14  Aligned_cols=154  Identities=45%  Similarity=0.723  Sum_probs=123.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC
Q 030880           14 FLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        14 v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   92 (170)
                      ++|++|+|||||++++.+... .....++. .+.........+....+.+||+||+..+...+..+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999998877 44444544 5666666766777889999999999988888888899999999999999


Q ss_pred             ChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCccccCHHH-HHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           93 SRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        93 ~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++.++.....|+ .........++|+++++||+|+.......... ........+.+++++|+.++.|+.+++++|.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            999998888773 23333344789999999999987554433322 44555666789999999999999999999864

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK04213 GTP-binding protein; Provisional

Probab=99.95  E-value=1.9e-27  Score=160.36  Aligned_cols=156  Identities=22%  Similarity=0.240  Sum_probs=104.6

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC-----------cc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QE   69 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~   69 (170)
                      |...++...++|+++|.+|+|||||++++.++.+.....+..+..  .......    .+.+|||||           ++
T Consensus         1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~--~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~   74 (201)
T PRK04213          1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRK--PNHYDWG----DFILTDLPGFGFMSGVPKEVQE   74 (201)
T ss_pred             CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeC--ceEEeec----ceEEEeCCccccccccCHHHHH
Confidence            445566677899999999999999999999887654445544332  2222222    589999999           45


Q ss_pred             cccccchhhhc----CCcEEEEEEeCCChhhHH----------hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880           70 RFRSLIPSYIR----DSSVAVVVYDVASRQSFL----------NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        70 ~~~~~~~~~~~----~~~~~i~v~d~~~~~s~~----------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (170)
                      .+...+..++.    .++++++|+|.+......          .....+..+.   ..++|+++|+||+|+.+..   .+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~  148 (201)
T PRK04213         75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DE  148 (201)
T ss_pred             HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HH
Confidence            55555555554    457888888875432110          0011112221   2479999999999986443   33


Q ss_pred             HHHHHHhhcCC---------eEEEEecCCCCChHHHhhcCCCC
Q 030880          136 EGEAKSRELNV---------MFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       136 ~~~~~~~~~~~---------~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ...++++.++.         .++++||++| |++++|++|.+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~  190 (201)
T PRK04213        149 VLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKR  190 (201)
T ss_pred             HHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHh
Confidence            45556666654         4799999999 999999998754

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.94  E-value=1e-25  Score=146.35  Aligned_cols=146  Identities=18%  Similarity=0.200  Sum_probs=108.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc------chhhhc--CCcEE
Q 030880           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYIR--DSSVA   85 (170)
Q Consensus        14 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~--~~~~~   85 (170)
                      ++|.+|+|||||++++.+........+..+.+.....+..++  ..+.+|||||+..+...      +..++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999998765444445555555555555554  57899999998876542      455554  99999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|+|+++++...   .+...+..   .++|+++++||+|+.+...+.. ....+...++.+++++|+.++.|+++++++
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~  151 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKDA  151 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence            9999998765432   23333332   3689999999999976544433 345777778899999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       152 l~~  154 (158)
T cd01879         152 IAE  154 (158)
T ss_pred             HHH
Confidence            764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.94  E-value=7.9e-26  Score=148.29  Aligned_cols=154  Identities=18%  Similarity=0.130  Sum_probs=106.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      .|+++|.+|+|||||+++|..+.+.....+..+.+......... +....+.+|||||++.+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887765444333333333333332 24578999999999988888888899999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC-HHHHHHHHh------hcCCeEEEEecCCCCChHHH
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSR------ELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~------~~~~~~~~~s~~~~~~i~~~  162 (170)
                      |+++....+ ....+..+..   .++|+++++||+|+....... ..+...+..      ..+++++++|+++|.|++++
T Consensus        82 d~~~~~~~~-~~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  157 (168)
T cd01887          82 AADDGVMPQ-TIEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL  157 (168)
T ss_pred             ECCCCccHH-HHHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence            998743211 1111222222   468999999999986432111 111111111      12368999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      +++|.+
T Consensus       158 ~~~l~~  163 (168)
T cd01887         158 LEAILL  163 (168)
T ss_pred             HHHHHH
Confidence            999865

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.94  E-value=3.2e-25  Score=137.15  Aligned_cols=160  Identities=24%  Similarity=0.324  Sum_probs=134.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc--ccceeeeEEEEEEE-EECCeEEEEEEEeCCCcccc-cccchhhhcCCc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT--YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERF-RSLIPSYIRDSS   83 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~-~~~~~~~~~~~~   83 (170)
                      +..||+++|..++|||+++++++.+.....  +.++.+ +.+...+ +.++-.-.+.++||.|-..+ ..+-..|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            457999999999999999999998766443  456666 4444443 44566668999999997766 567788999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++||+..+++||+.+...-..+.+... ..+|+++++||+|+.++.++..+.+..|++...+..+++++.+...+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            99999999999999987666666655543 67999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |.+++.
T Consensus       167 f~~l~~  172 (198)
T KOG3883|consen  167 FTYLAS  172 (198)
T ss_pred             HHHHHH
Confidence            988754

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.94  E-value=7.3e-26  Score=151.84  Aligned_cols=149  Identities=17%  Similarity=0.225  Sum_probs=104.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   75 (170)
                      -+|+++|.+++|||||+++|+.  +.+...+            .++.+.+.......+......+.+|||||+++|...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            4899999999999999999997  4443322            1122333333434445566789999999999999999


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-cCHHHHHHHHh-------hcCCe
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSR-------ELNVM  147 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~~  147 (170)
                      ..+++++|++++|||+++.. +.....++..+..   .++|+++++||+|+..... ...+++..+..       ..+++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFP  158 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccC
Confidence            99999999999999998742 2223333333322   4689999999999864332 12344444442       33678


Q ss_pred             EEEEecCCCCChHHH
Q 030880          148 FIETSAKAGFNIKVC  162 (170)
Q Consensus       148 ~~~~s~~~~~~i~~~  162 (170)
                      ++.+|+++|.|++++
T Consensus       159 iv~~Sa~~g~~~~~~  173 (194)
T cd01891         159 VLYASAKNGWASLNL  173 (194)
T ss_pred             EEEeehhcccccccc
Confidence            999999999877544

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.94  E-value=1.7e-25  Score=159.97  Aligned_cols=158  Identities=15%  Similarity=0.095  Sum_probs=113.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----ccc---hhhhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLI---PSYIRDS   82 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~   82 (170)
                      ..|+++|.+++|||||++++..........+.++.......+...+ ...+.+||+||..+-.    .+.   ...++++
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera  236 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT  236 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence            4689999999999999999998653222222233333333333332 3678999999964321    222   3335579


Q ss_pred             cEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           83 SVAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        83 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                      +++++|+|+++.   ++++....|..++..+..  .+.|++||+||+|+.++.. ..+..+.+.+..+..++++||++++
T Consensus       237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCc
Confidence            999999999976   678888888888766542  4789999999999965532 2344556666678899999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |+++++++|.+.
T Consensus       316 GI~eL~~~I~~~  327 (329)
T TIGR02729       316 GLDELLYALAEL  327 (329)
T ss_pred             CHHHHHHHHHHH
Confidence            999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.94  E-value=3.2e-25  Score=159.81  Aligned_cols=154  Identities=20%  Similarity=0.179  Sum_probs=111.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccccchhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~   78 (170)
                      ..++|+++|.+++|||||+|+|++........+..+.+.....+..++ +..+.+|||+|..+         +... ...
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~t-le~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRAT-LEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence            348999999999999999999998765433334444555555565543 24799999999721         2221 224


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      +.++|++++|+|++++.+.+....|...+......+.|+++|+||+|+.+...     ..... .....++.+||++|.|
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg~G  339 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTGEG  339 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCCCC
Confidence            78999999999999998887777666666554445789999999999864322     11111 1234689999999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       340 I~eL~~~I~~~  350 (351)
T TIGR03156       340 LDLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHHhh
Confidence            99999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.93  E-value=2.5e-25  Score=138.11  Aligned_cols=114  Identities=32%  Similarity=0.560  Sum_probs=87.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ||+|+|++|+|||||+++|.+....  ..+.+..+.+..............+.+||++|++.+...+...++++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999998876  12222333344444556677777799999999998888888889999999999


Q ss_pred             EeCCChhhHHhHHHH---HHHHHHhcCCCCeEEEEEeCCC
Q 030880           89 YDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D  125 (170)
                      ||++++++++.+..+   +..+.... .++|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~-~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRD-KNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHS-SCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccC-CCCCEEEEEeccC
Confidence            999999999997555   45554433 5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.93  E-value=2.6e-25  Score=146.82  Aligned_cols=156  Identities=17%  Similarity=0.113  Sum_probs=108.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccc---hhhhcCCcEEE
Q 030880           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLI---PSYIRDSSVAV   86 (170)
Q Consensus        14 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~---~~~~~~~~~~i   86 (170)
                      ++|++|+|||||+++|.+........+..+.+......... ....+.+||+||..+    ...+.   ..+++++|+++
T Consensus         1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii   79 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP-DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL   79 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC-CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence            58999999999999999876421112222223322223333 146789999999632    12222   34477899999


Q ss_pred             EEEeCCCh------hhHHhHHHHHHHHHHhcC-------CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880           87 VVYDVASR------QSFLNTSKWIDEVRTERG-------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~------~s~~~~~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (170)
                      +|+|+++.      .+++....|...+.....       .+.|+++|+||+|+..................+..++++|+
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  159 (176)
T cd01881          80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISA  159 (176)
T ss_pred             EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEeh
Confidence            99999988      578788778777765432       36999999999999755443333233445555678999999


Q ss_pred             CCCCChHHHhhcCCCCC
Q 030880          154 KAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~~i  170 (170)
                      +++.|++++++++...+
T Consensus       160 ~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         160 KTEEGLDELIRAIYELL  176 (176)
T ss_pred             hhhcCHHHHHHHHHhhC
Confidence            99999999999987643

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=5.9e-25  Score=134.04  Aligned_cols=156  Identities=24%  Similarity=0.376  Sum_probs=128.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .++++|+.+|..++||||++.+|.-+... ...|+.++.....+    ..++++.+||.+|+++.+.+|+.|+.+..++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~~ipTvGFnvetVt----ykN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHhcCCCc-ccccccceeEEEEE----eeeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            46899999999999999999999977644 44677776655433    35689999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (170)
                      ||.|..+.+..++.+..+..+..... .++|++|.+||.|+..+.  .++++..+.+     ..+.-+..+++.+|.|+.
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999999999999888877766553 789999999999996553  4555555443     334578899999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +.|.||.+.
T Consensus       168 eglswlsnn  176 (180)
T KOG0071|consen  168 EGLSWLSNN  176 (180)
T ss_pred             HHHHHHHhh
Confidence            999998764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=1.6e-25  Score=142.98  Aligned_cols=148  Identities=22%  Similarity=0.273  Sum_probs=104.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cchhhh--cC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI--RD   81 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--~~   81 (170)
                      ++|+++|.|++|||||+|+|++.+......|..+.+.....+...+  ..+.++|+||......      ....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            5899999999999999999999876544456565565555555555  6799999999433322      233343  58


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .|+++.|.|+++.+.-..   ...++..   .+.|+++++||+|...+..... ....+.+.+|++++.+||++++|+++
T Consensus        79 ~D~ii~VvDa~~l~r~l~---l~~ql~e---~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~  151 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLY---LTLQLLE---LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE  151 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHH---HHHHHHH---TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred             CCEEEEECCCCCHHHHHH---HHHHHHH---cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence            999999999987543222   2233332   4699999999999976655442 36777888999999999999999999


Q ss_pred             HhhcC
Q 030880          162 CLMLH  166 (170)
Q Consensus       162 ~~~~l  166 (170)
                      +++.|
T Consensus       152 L~~~I  156 (156)
T PF02421_consen  152 LKDAI  156 (156)
T ss_dssp             HHHHH
T ss_pred             HHhhC
Confidence            98754

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.93  E-value=2.9e-26  Score=140.76  Aligned_cols=152  Identities=25%  Similarity=0.384  Sum_probs=126.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .++.+.++|...+|||||++....+.+.....|+.++....    +....+.+.+||.||++.++++|..|++.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk----~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRK----VTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEE----eccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            35789999999999999999999888877777887765543    44677899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--------CeEEEEecCCCCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--------VMFIETSAKAGFN  158 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~s~~~~~~  158 (170)
                      |+|+++++.+...+..+..+..... .+.|++|++||.|+.++-  ..   ..+..+.|        +..|.+|+++..|
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~---~~li~rmgL~sitdREvcC~siScke~~N  169 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SK---IALIERMGLSSITDREVCCFSISCKEKVN  169 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cH---HHHHHHhCccccccceEEEEEEEEcCCcc
Confidence            9999999999888888887766543 789999999999986542  22   22233333        4679999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++-+.+||++
T Consensus       170 id~~~~Wli~  179 (186)
T KOG0075|consen  170 IDITLDWLIE  179 (186)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.93  E-value=1.8e-24  Score=140.17  Aligned_cols=145  Identities=21%  Similarity=0.192  Sum_probs=105.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhhhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR   80 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   80 (170)
                      ++|+++|++|+|||||++++.+.... ....+..+.+.........  ..++.+|||||...+...        ....+.
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~   79 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE   79 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence            58999999999999999999987642 1222333333333333333  457899999997655432        234577


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      ++|++++|+|++++.+......+..      ....|+++++||+|+.+....       .....+.+++++|++++.|++
T Consensus        80 ~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~  146 (157)
T cd04164          80 EADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD  146 (157)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence            9999999999998877766544432      356999999999998755433       334456789999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       147 ~l~~~l~~~  155 (157)
T cd04164         147 ELKEALLEL  155 (157)
T ss_pred             HHHHHHHHh
Confidence            999998654

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01889 SelB_euk SelB subfamily

Probab=99.93  E-value=9.2e-25  Score=146.27  Aligned_cols=157  Identities=20%  Similarity=0.177  Sum_probs=100.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC----CC---CCcccceeeeEEEEEEEEE------------CCeEEEEEEEeCCCccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD----KF---DNTYQATIGIDFLSKTMYL------------EDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~----~~---~~~~~~~~~~~~~~~~~~~------------~~~~~~~~i~D~~g~~~   70 (170)
                      +||+++|++++|||||+++|+..    .+   .....+..+.+.......+            .+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999999973    11   1111122222222222222            23367899999999876


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHh------
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR------  142 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~------  142 (170)
                      +........+.+|++++|+|+++.........+.  +...  .+.|+++++||+|+......  ..++..+...      
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~  156 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT  156 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            5444444456789999999998754333222221  1121  25799999999998643221  1222222111      


Q ss_pred             -hcCCeEEEEecCCCCChHHHhhcCCCCC
Q 030880          143 -ELNVMFIETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       143 -~~~~~~~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                       ..+++++++|+++|.|+++++++|..+|
T Consensus       157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~  185 (192)
T cd01889         157 RFKNSPIIPVSAKPGGGEAELGKDLNNLI  185 (192)
T ss_pred             CcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence             2357899999999999999999987764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00436 era GTP-binding protein Era

Probab=99.93  E-value=1.7e-24  Score=151.84  Aligned_cols=151  Identities=17%  Similarity=0.117  Sum_probs=102.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRD   81 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~   81 (170)
                      +|+++|.+|+|||||+|+|++...... ..+.++..... .....+ ...+.+|||||......        ....++++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~   79 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG   79 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence            689999999999999999998765321 12222222222 222222 34699999999754321        12345789


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChH
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  160 (170)
                      +|++++|+|+++..+.+  ..++..+..   .+.|+++|+||+|+.+.... ......+....+. .++++||++|.|++
T Consensus        80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~  153 (270)
T TIGR00436        80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS  153 (270)
T ss_pred             CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence            99999999999876654  333333332   36899999999998643222 2334444444444 89999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|.+.
T Consensus       154 ~L~~~l~~~  162 (270)
T TIGR00436       154 FLAAFIEVH  162 (270)
T ss_pred             HHHHHHHHh
Confidence            999988653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.93  E-value=1.8e-24  Score=159.96  Aligned_cols=147  Identities=22%  Similarity=0.215  Sum_probs=110.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   78 (170)
                      ..++|+++|++|+|||||+|+|++... .....+.++.+.....+..++  ..+.+|||||..++...        ...+
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            458999999999999999999998643 122334555666666666655  56789999998665432        2356


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ++++|++++|||++++.+++..  |+..+..   .++|+++|+||+|+.+.      +...+++..+.+++.+|+++ .|
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~---~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~g  347 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK---SKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LK  347 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh---CCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CC
Confidence            7899999999999998877664  5555432   46899999999998543      12345666778899999998 69


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|+.|.+
T Consensus       348 I~~~~~~L~~  357 (442)
T TIGR00450       348 IKALVDLLTQ  357 (442)
T ss_pred             HHHHHHHHHH
Confidence            9998887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.92  E-value=2.6e-24  Score=143.52  Aligned_cols=154  Identities=23%  Similarity=0.212  Sum_probs=108.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccc----------------eeeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA----------------TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      +|+++|.+|+|||||+++|.+.........                ..+.......  .......+.+||+||+..+...
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~liDtpG~~~~~~~   78 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVAT--FEWPDRRVNFIDTPGHEDFSSE   78 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEE--EeeCCEEEEEEeCCCcHHHHHH
Confidence            589999999999999999998765543211                1111211222  2223568999999999988888


Q ss_pred             chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhh---------
Q 030880           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRE---------  143 (170)
Q Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~---------  143 (170)
                      +..+++.+|++++|+|.+++.+... ..++..+..   .+.|+++++||+|+..+...  ...+..+..+.         
T Consensus        79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (189)
T cd00881          79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEE  154 (189)
T ss_pred             HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhh
Confidence            8889999999999999987654332 233333332   46999999999999753221  12333333333         


Q ss_pred             -----cCCeEEEEecCCCCChHHHhhcCCCCC
Q 030880          144 -----LNVMFIETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       144 -----~~~~~~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                           ...+++++|+++|.|++++|++|.+.+
T Consensus       155 ~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         155 GTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             hcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence                 356899999999999999999987653

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=3.5e-24  Score=154.19  Aligned_cols=153  Identities=20%  Similarity=0.296  Sum_probs=103.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-cccc-------hh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-RSLI-------PS   77 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-~~~~-------~~   77 (170)
                      .+..+|+++|.+|+|||||+++|++..+... ..+.++.+.....+..++  ..+.+|||||..+. ..+.       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            3456999999999999999999998776421 112222233333333333  46899999997532 2221       12


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecC
Q 030880           78 YIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAK  154 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~  154 (170)
                      .++++|++++|+|..+  ++.... .|+..+..   .+.|.++|+||+|+.+.   ...++.+++...+  ..++++||+
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk  199 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL  199 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence            4679999999999764  344443 34444433   24677889999998543   2345556655544  589999999


Q ss_pred             CCCChHHHhhcCCCC
Q 030880          155 AGFNIKVCLMLHPNT  169 (170)
Q Consensus       155 ~~~~i~~~~~~l~~~  169 (170)
                      +|.|++++|++|.+.
T Consensus       200 tg~gv~eL~~~L~~~  214 (339)
T PRK15494        200 SGKNIDGLLEYITSK  214 (339)
T ss_pred             CccCHHHHHHHHHHh
Confidence            999999999998653

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.92  E-value=7.7e-24  Score=160.95  Aligned_cols=150  Identities=21%  Similarity=0.222  Sum_probs=109.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ..+.+|+++|+.++|||||++++.+..+.....+..+.+.....+...+. ..+.+|||||++.|..++...+..+|+++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI  163 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV  163 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence            35578999999999999999999988776554444444444444444332 27899999999999999998999999999


Q ss_pred             EEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---------CeEEEEecC
Q 030880           87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAK  154 (170)
Q Consensus        87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~  154 (170)
                      +|+|+++.   ++.+.       +......++|+++++||+|+.+.   ..++........+         .+++++||+
T Consensus       164 LVVda~dgv~~qT~e~-------i~~~~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk  233 (587)
T TIGR00487       164 LVVAADDGVMPQTIEA-------ISHAKAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVPVSAL  233 (587)
T ss_pred             EEEECCCCCCHhHHHH-------HHHHHHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence            99998864   33322       22222356999999999998542   2333433333322         479999999


Q ss_pred             CCCChHHHhhcCC
Q 030880          155 AGFNIKVCLMLHP  167 (170)
Q Consensus       155 ~~~~i~~~~~~l~  167 (170)
                      +|.|++++|++|.
T Consensus       234 tGeGI~eLl~~I~  246 (587)
T TIGR00487       234 TGDGIDELLDMIL  246 (587)
T ss_pred             CCCChHHHHHhhh
Confidence            9999999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.92  E-value=1.5e-24  Score=140.71  Aligned_cols=137  Identities=15%  Similarity=0.170  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc----cchhhhcCCcEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LIPSYIRDSSVAV   86 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~~~~~~~~~i   86 (170)
                      +|+++|.+++|||||++++.+.....  ..+.+       ......    .+||+||......    .....++++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCccC--ccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999987643211  11111       111121    2699999632221    1123368999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC--eEEEEecCCCCChHHHhh
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~~~  164 (170)
                      +|+|+++..++..  .|+..+    ..++|+++++||+|+.+   ...+.+.+++++.+.  +++++|+++|+|++++|+
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~  140 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVD  140 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHH
Confidence            9999998876532  333332    24678999999999854   235667777777775  899999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      ++.+.
T Consensus       141 ~l~~~  145 (158)
T PRK15467        141 YLASL  145 (158)
T ss_pred             HHHHh
Confidence            98764

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.92  E-value=2.3e-24  Score=160.16  Aligned_cols=145  Identities=23%  Similarity=0.235  Sum_probs=108.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   78 (170)
                      ..++|+++|.+++|||||+|+|++... .....+..+.+.....+..++  ..+.+|||||.+++...        ...+
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            358999999999999999999998764 223344455566565565554  56899999998764432        2335


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ++++|++++|+|++++.+++....|..      ..+.|+++|+||+|+.+.....        ...+..++.+|+++|.|
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~G  357 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEG  357 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCC
Confidence            789999999999999887765444332      3568999999999996543221        34457899999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      +++++++|.+
T Consensus       358 I~~L~~~L~~  367 (449)
T PRK05291        358 IDELREAIKE  367 (449)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>cd01894 EngA1 EngA1 subfamily

Probab=99.92  E-value=3.9e-24  Score=138.65  Aligned_cols=147  Identities=20%  Similarity=0.151  Sum_probs=100.1

Q ss_pred             EEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhhcCCc
Q 030880           13 VFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIRDSS   83 (170)
Q Consensus        13 ~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~~~~   83 (170)
                      +++|.+|+|||||+++|.+.... ....+..+.+.........  +..+.+|||||...+..        .....++++|
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d   78 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG--GREFILIDTGGIEPDDEGISKEIREQAELAIEEAD   78 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC--CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence            47899999999999999986421 1112222223333333333  36799999999877543        3345678999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  162 (170)
                      ++++|+|..++.+.... .....+..   .+.|+++++||+|+.+....     .......+. .++++|++++.|++++
T Consensus        79 ~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~l  149 (157)
T cd01894          79 VILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGDL  149 (157)
T ss_pred             EEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHHH
Confidence            99999999876443332 12222222   35999999999998654322     233344566 7899999999999999


Q ss_pred             hhcCCCCC
Q 030880          163 LMLHPNTV  170 (170)
Q Consensus       163 ~~~l~~~i  170 (170)
                      |++|++.+
T Consensus       150 ~~~l~~~~  157 (157)
T cd01894         150 LDAILELL  157 (157)
T ss_pred             HHHHHhhC
Confidence            99988754

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.92  E-value=5.1e-24  Score=162.54  Aligned_cols=154  Identities=19%  Similarity=0.186  Sum_probs=111.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-------CCccc------ceeeeEEEEEE--EEE---CCeEEEEEEEeCCCcccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQ------ATIGIDFLSKT--MYL---EDRTVRLQLWDTAGQERF   71 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~------~~~~~~~~~~~--~~~---~~~~~~~~i~D~~g~~~~   71 (170)
                      -|++++|+.++|||||+++|+....       ...+.      ...+.+.....  +..   ++..+.+++|||||+.+|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            4899999999999999999987421       11111      11122332222  222   456689999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---eE
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---MF  148 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~  148 (170)
                      ...+..+++.+|++++|+|+++..+.+....|.....    .++|+++++||+|+....  ......++.+.+++   .+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~v  157 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEA  157 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceE
Confidence            9999999999999999999998766665555544332    368999999999985432  12223455555565   48


Q ss_pred             EEEecCCCCChHHHhhcCCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      +.+||++|.|++++|++|.+.
T Consensus       158 i~vSAktG~GI~~Lle~I~~~  178 (595)
T TIGR01393       158 ILASAKTGIGIEEILEAIVKR  178 (595)
T ss_pred             EEeeccCCCCHHHHHHHHHHh
Confidence            999999999999999998653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.92  E-value=2.3e-23  Score=140.37  Aligned_cols=157  Identities=20%  Similarity=0.285  Sum_probs=111.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC-cEEEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS-SVAVVVY   89 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~-~~~i~v~   89 (170)
                      +|+++|++|+|||+|+++|..+.+...+.++. ...........+....+.+||+||+.+++..+..+++++ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999999987765544332 222222222223456899999999999998888899998 9999999


Q ss_pred             eCCCh-hhHHhHHHHHHHHHHh---cCCCCeEEEEEeCCCCCCccccC------HHHHHHHHh-----------------
Q 030880           90 DVASR-QSFLNTSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSR-----------------  142 (170)
Q Consensus        90 d~~~~-~s~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~-----------------  142 (170)
                      |+++. +++.....|+..+...   ...++|+++++||+|+..+....      ..++..+..                 
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~  160 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKE  160 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence            99987 6788877776665432   22589999999999986431110      111111110                 


Q ss_pred             ---------------hcCCeEEEEecCCCC-ChHHHhhcCCC
Q 030880          143 ---------------ELNVMFIETSAKAGF-NIKVCLMLHPN  168 (170)
Q Consensus       143 ---------------~~~~~~~~~s~~~~~-~i~~~~~~l~~  168 (170)
                                     ...+.+.++|++.+. |++.+.+||.+
T Consensus       161 ~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         161 SLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             ccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence                           113468899998876 69999999865

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.92  E-value=1.2e-23  Score=157.72  Aligned_cols=151  Identities=18%  Similarity=0.127  Sum_probs=104.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchhhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYI   79 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~   79 (170)
                      ..+|+++|.+|+|||||+|+|+++... ....+..+.+.........+  ..+.+|||||.+.        +...+..++
T Consensus        38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~  115 (472)
T PRK03003         38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVAM  115 (472)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHHH
Confidence            368999999999999999999987542 22334444444444444444  4688999999763        223345678


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      +++|++++|+|++++.++.. ..+...+..   .++|+++|+||+|+....   .+....+....+ ..+++||++|.|+
T Consensus       116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~gi  187 (472)
T PRK03003        116 RTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGRGV  187 (472)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCCCc
Confidence            89999999999998765432 233333332   469999999999985321   122233333333 3478999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       188 ~eL~~~i~~~  197 (472)
T PRK03003        188 GDLLDAVLAA  197 (472)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=2.7e-24  Score=137.53  Aligned_cols=160  Identities=29%  Similarity=0.542  Sum_probs=140.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...++++++|..|.||||++.+++.+.+...+.++.+.+.+......+...+++..|||.|++.+..+...|+-+..+.+
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            46789999999999999999999999999999999998888877655555799999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      ++||++..-++.++.+|...+.+.+ .++|+++++||.|.....  .......+-+..++.|++.|++++.|...-|-|+
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~-~NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~L  164 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVR-ENIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWL  164 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHh-cCCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHHH
Confidence            9999999999999999999998887 469999999999985433  2233445566778999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       165 arK  167 (216)
T KOG0096|consen  165 ARK  167 (216)
T ss_pred             hhh
Confidence            764

>PRK11058 GTPase HflX; Provisional

Probab=99.91  E-value=8.6e-24  Score=155.62  Aligned_cols=153  Identities=19%  Similarity=0.170  Sum_probs=106.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc--cccc------hhhhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSLI------PSYIRD   81 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~~------~~~~~~   81 (170)
                      .+|+++|.+++|||||+|+|++........++.+.+.....+...+. ..+.+|||+|..+.  ...+      ...+++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~  276 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETRQ  276 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence            58999999999999999999987654333344445555545545442 26789999997332  1222      233678


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe-EEEEecCCCCChH
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK  160 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~  160 (170)
                      +|++++|+|++++.+++.+..|...+......++|+++|+||+|+.+...   ....  ....+.+ ++.+|+++|.|++
T Consensus       277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG~GId  351 (426)
T PRK11058        277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTGAGIP  351 (426)
T ss_pred             CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCCCCHH
Confidence            99999999999998877776555544444345799999999999864321   1111  1123444 4889999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      +++++|.+
T Consensus       352 eL~e~I~~  359 (426)
T PRK11058        352 LLFQALTE  359 (426)
T ss_pred             HHHHHHHH
Confidence            99998864

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=2.3e-23  Score=152.59  Aligned_cols=153  Identities=18%  Similarity=0.122  Sum_probs=109.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc----cccchhh---hcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----RSLIPSY---IRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----~~~~~~~---~~~~~   83 (170)
                      .|.++|.+++|||||++++++....-...|.++.......+... ....+.+||+||..+-    ..+...+   +++++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~-~~~~~~laD~PGliega~~~~gLg~~fLrhier~~  238 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD-DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR  238 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe-CCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence            79999999999999999999865321222333333322223222 1457999999996431    1222333   55799


Q ss_pred             EEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ++++|+|+++.   ++++....|..++..+..  .++|.+||+||+|+...    .+....+.+.++.+++++||++++|
T Consensus       239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeG  314 (424)
T PRK12297        239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQG  314 (424)
T ss_pred             EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCC
Confidence            99999999864   677778888888876643  47899999999998422    3445666667778899999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      +++++++|.+
T Consensus       315 I~eL~~~L~~  324 (424)
T PRK12297        315 LDELLYAVAE  324 (424)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.91  E-value=1.2e-23  Score=141.95  Aligned_cols=158  Identities=18%  Similarity=0.154  Sum_probs=100.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEEEEE-------------------------C--C----
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYL-------------------------E--D----   55 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~-------------------------~--~----   55 (170)
                      ++|.++|+.|+|||||+..+......   .+.....+..........                         .  +    
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            47999999999999999999754211   111111111110000000                         0  0    


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--C
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--S  133 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~  133 (170)
                      ....+.+|||||++.+...+...+.++|++++|+|++++.........+..+...  ...|+++++||+|+.+....  .
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~--~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM--GLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc--CCCcEEEEEEchhccCHHHHHHH
Confidence            1267999999999988887788888999999999998742111112222222221  22478999999999653221  1


Q ss_pred             HHHHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCCC
Q 030880          134 IEEGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       134 ~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .++++++....   +++++.+|+++|.|++++|++|.+.
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~  197 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKK  197 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHh
Confidence            23344444432   5789999999999999999998764

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=1.2e-23  Score=157.65  Aligned_cols=155  Identities=23%  Similarity=0.231  Sum_probs=107.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc-
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI-   75 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~-   75 (170)
                      ..++|+++|.+++|||||+++|++.... ....+.++.+.....+..++.  .+.+|||||..+          +..+. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence            4589999999999999999999987642 233445555555555555553  567999999532          22221 


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHH-HHhhcCCeEEEEe
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA-KSRELNVMFIETS  152 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~-~~~~~~~~~~~~s  152 (170)
                      ..+++++|++++|+|++++.++.... ++..+..   .++|+++|+||+|+.+....  ...+... +.....++++++|
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            23578999999999999988777664 3333322   46899999999999643211  1122222 2222346899999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      |++|.|++++|+.+.+
T Consensus       364 Ak~g~gv~~lf~~i~~  379 (472)
T PRK03003        364 AKTGRAVDKLVPALET  379 (472)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998754

>cd04163 Era Era subfamily

Probab=99.91  E-value=5.1e-23  Score=134.44  Aligned_cols=157  Identities=17%  Similarity=0.132  Sum_probs=103.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYI   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~   79 (170)
                      ...+|+++|++|+|||||++++.+............ ...............+.+|||||......        .....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQT-TRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCc-eeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            357899999999999999999998754322111111 11111111233356899999999654332        234457


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCC
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN  158 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (170)
                      ..+|++++|+|++++.+. ....+...+..   .+.|+++++||+|+........+....+....+ .+++.+|++++.|
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  156 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN  156 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence            899999999999987211 12222233332   258999999999986433333334444444443 6899999999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      +++++++|.+.
T Consensus       157 ~~~l~~~l~~~  167 (168)
T cd04163         157 VDELLEEIVKY  167 (168)
T ss_pred             hHHHHHHHHhh
Confidence            99999998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.91  E-value=5.1e-23  Score=136.41  Aligned_cols=150  Identities=19%  Similarity=0.221  Sum_probs=97.4

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRS   73 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~   73 (170)
                      ++.....+|+++|++|+|||||++++.+..+.....++.+.+........++   .+.+||+||...          +..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            4556788999999999999999999998764333233332222222222222   689999999532          223


Q ss_pred             cchhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhcC--C
Q 030880           74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--V  146 (170)
Q Consensus        74 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~  146 (170)
                      +...+++   .++++++|+|.+++-+..+. ..+..+..   .++|+++++||+|+.++..  ...++++......+  .
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            3334554   45899999999876444333 22233322   3689999999999864422  22444555555554  4


Q ss_pred             eEEEEecCCCCChH
Q 030880          147 MFIETSAKAGFNIK  160 (170)
Q Consensus       147 ~~~~~s~~~~~~i~  160 (170)
                      .++++|+++|+|++
T Consensus       166 ~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKTGID  179 (179)
T ss_pred             ceEEEECCCCCCCC
Confidence            89999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.91  E-value=3.9e-23  Score=138.78  Aligned_cols=159  Identities=19%  Similarity=0.161  Sum_probs=102.4

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRS   73 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~   73 (170)
                      .......+|+++|.+|+|||||+++++++.+.....++.+.+........   ...+.+|||||..          ++..
T Consensus        19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~   95 (196)
T PRK00454         19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQK   95 (196)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHH
Confidence            44556789999999999999999999987643333333332222211111   2579999999943          2333


Q ss_pred             cchhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhhcCCeE
Q 030880           74 LIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVMF  148 (170)
Q Consensus        74 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  148 (170)
                      ....+++.   .+++++++|.+++.+....  ++......  .+.|+++++||+|+.+..+.  ..+++.......+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~  171 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV  171 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce
Confidence            33444544   4678888998876443321  11111121  36889999999998654322  1233444444446789


Q ss_pred             EEEecCCCCChHHHhhcCCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      +++|++++.|++++++.|.+.
T Consensus       172 ~~~Sa~~~~gi~~l~~~i~~~  192 (196)
T PRK00454        172 ILFSSLKKQGIDELRAAIAKW  192 (196)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            999999999999999988653

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.91  E-value=1.5e-23  Score=130.09  Aligned_cols=160  Identities=23%  Similarity=0.521  Sum_probs=140.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ..-.+||.++|++..|||||+-++.++.+..++..+.+..+..+.+.+.+....+.+||.+|++++..+.+...+.+-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            34568999999999999999999999998888888889999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-----cccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-----RQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      +++||++.+.++..++.|+.+.+......+| |++++|.|..-.     +.-...+++.+++..+++.+.||+....|+.
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999998877655566 667999997421     2222456788899999999999999999999


Q ss_pred             HHhhcC
Q 030880          161 VCLMLH  166 (170)
Q Consensus       161 ~~~~~l  166 (170)
                      ++|..+
T Consensus       176 KIFK~v  181 (205)
T KOG1673|consen  176 KIFKIV  181 (205)
T ss_pred             HHHHHH
Confidence            998754

>cd01895 EngA2 EngA2 subfamily

Probab=99.91  E-value=1.3e-22  Score=133.37  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=101.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----------cch
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----------LIP   76 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----------~~~   76 (170)
                      +++|+++|.+|+|||||++++.+..... ...+..+...........+  ..+.+||+||..+...           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~   79 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL   79 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence            5799999999999999999999865321 1122222233333333333  4578999999654311           112


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH-HHHhhc----CCeEEEE
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-AKSREL----NVMFIET  151 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~----~~~~~~~  151 (170)
                      ..+.++|++++|+|++++.+..... ++..+.   ..+.|+++++||+|+.+......+... ...+..    +.+++.+
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL---EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFI  155 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH---hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEE
Confidence            3467899999999999886654432 222222   246899999999998755322222222 222333    3689999


Q ss_pred             ecCCCCChHHHhhcCCC
Q 030880          152 SAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~  168 (170)
                      |++++.|++++++++.+
T Consensus       156 Sa~~~~~i~~~~~~l~~  172 (174)
T cd01895         156 SALTGQGVDKLFDAIDE  172 (174)
T ss_pred             eccCCCCHHHHHHHHHH
Confidence            99999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.91  E-value=1.1e-22  Score=158.12  Aligned_cols=149  Identities=18%  Similarity=0.198  Sum_probs=108.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .....|+++|..++|||||+++|..+.+.....+..+.+.....+...+  ..++||||||++.|..++...++.+|+++
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4567899999999999999999998776544444333333333344443  57999999999999999998999999999


Q ss_pred             EEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH-------HHhhcC--CeEEEEecC
Q 030880           87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-------KSRELN--VMFIETSAK  154 (170)
Q Consensus        87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-------~~~~~~--~~~~~~s~~  154 (170)
                      +|||+++.   ++.+.       +......++|++|++||+|+....   .+....       ++..++  ++++++|++
T Consensus       366 LVVdAddGv~~qT~e~-------i~~a~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~vpvSAk  435 (787)
T PRK05306        366 LVVAADDGVMPQTIEA-------INHAKAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIFVPVSAK  435 (787)
T ss_pred             EEEECCCCCCHhHHHH-------HHHHHhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceEEEEeCC
Confidence            99999874   33322       222223569999999999985432   111111       122233  689999999


Q ss_pred             CCCChHHHhhcCC
Q 030880          155 AGFNIKVCLMLHP  167 (170)
Q Consensus       155 ~~~~i~~~~~~l~  167 (170)
                      +|.|++++|++|.
T Consensus       436 tG~GI~eLle~I~  448 (787)
T PRK05306        436 TGEGIDELLEAIL  448 (787)
T ss_pred             CCCCchHHHHhhh
Confidence            9999999999885

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=3.4e-23  Score=153.59  Aligned_cols=156  Identities=17%  Similarity=0.075  Sum_probs=105.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----c---cchhhhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----S---LIPSYIRDS   82 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~---~~~~~~~~~   82 (170)
                      ..|+++|.|++|||||+++|.+....-...|.++.......+...+  ..+.+||+||..+..    .   .....++++
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            5799999999999999999997654322223333333333333333  579999999953211    1   123346789


Q ss_pred             cEEEEEEeCCCh----hhHHhHHHHHHHHHHhc-----------CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe
Q 030880           83 SVAVVVYDVASR----QSFLNTSKWIDEVRTER-----------GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (170)
Q Consensus        83 ~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      +++++|+|+++.    +.++....+..++..+.           ....|++||+||+|+.+.... .+.........+++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~g~~  316 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEARGWP  316 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHcCCe
Confidence            999999999853    34555555555554432           146899999999999654332 22233334455789


Q ss_pred             EEEEecCCCCChHHHhhcCCC
Q 030880          148 FIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++.+|++++.|+++++++|.+
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~e  337 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAE  337 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999998864

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.90  E-value=1.9e-22  Score=150.18  Aligned_cols=155  Identities=20%  Similarity=0.167  Sum_probs=104.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc----------
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI----------   75 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~----------   75 (170)
                      ...++++++|.+++|||||+++|++.... ....+.++.+.........+  ..+.+|||||..++....          
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~  247 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLR  247 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHH
Confidence            34589999999999999999999986532 22233343444444444444  378999999976544322          


Q ss_pred             -hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH-hh----cCCeEE
Q 030880           76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-RE----LNVMFI  149 (170)
Q Consensus        76 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~~  149 (170)
                       ..+++.+|++++|+|++++.+..... ++..+..   .++|+++|+||+|+.+.. ...++..... ..    .+++++
T Consensus       248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       248 TLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDE-KTREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCH-HHHHHHHHHHHHhcccCCCCceE
Confidence             34578999999999999876655543 2233222   468999999999996211 1111221111 11    247899


Q ss_pred             EEecCCCCChHHHhhcCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++||++|.|++++|+++.+
T Consensus       323 ~~SA~~g~~v~~l~~~i~~  341 (429)
T TIGR03594       323 FISALTGQGVDKLLDAIDE  341 (429)
T ss_pred             EEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998753

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.90  E-value=9.1e-23  Score=157.44  Aligned_cols=151  Identities=19%  Similarity=0.210  Sum_probs=108.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeE--EEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ...+|+++|..++|||||+++|....+.....+..+.+  .+.......+....+.+|||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            55789999999999999999999876654333322222  2222233334568899999999999999999999999999


Q ss_pred             EEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH-------HhhcC--CeEEEEec
Q 030880           86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK-------SRELN--VMFIETSA  153 (170)
Q Consensus        86 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~  153 (170)
                      ++|+|+++.   ++++.+.    .   ....++|+++++||+|+....   .++..+.       ....+  ++++++||
T Consensus       323 ILVVDA~dGv~~QT~E~I~----~---~k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSA  392 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAIN----Y---IQAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISA  392 (742)
T ss_pred             EEEEECcCCCChhhHHHHH----H---HHhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence            999999874   3333222    1   223569999999999986532   2222222       12223  68999999


Q ss_pred             CCCCChHHHhhcCCC
Q 030880          154 KAGFNIKVCLMLHPN  168 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~  168 (170)
                      ++|.|++++|++|..
T Consensus       393 ktG~GIdeLle~I~~  407 (742)
T CHL00189        393 SQGTNIDKLLETILL  407 (742)
T ss_pred             CCCCCHHHHHHhhhh
Confidence            999999999998854

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=8.9e-23  Score=148.75  Aligned_cols=157  Identities=17%  Similarity=0.088  Sum_probs=110.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccchhhhcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~   83 (170)
                      .|.++|.|++|||||+|+|.+.+......|.++.....-.+... ....+.++|+||..+-.       ......++.++
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~-~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD-DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC-CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            69999999999999999999865432223434333333333332 23468999999965321       11223478999


Q ss_pred             EEEEEEeCC---ChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCC
Q 030880           84 VAVVVYDVA---SRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG  156 (170)
Q Consensus        84 ~~i~v~d~~---~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  156 (170)
                      ++++|+|++   +.+.++....|+.++..+..  .+.|+++|+||+|+.....+ .+....+.+..+  ..++.+||+++
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCC
Confidence            999999988   45677777888888776542  46899999999998654332 234444555544  47899999999


Q ss_pred             CChHHHhhcCCCC
Q 030880          157 FNIKVCLMLHPNT  169 (170)
Q Consensus       157 ~~i~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       319 ~GIdeLl~~I~~~  331 (390)
T PRK12298        319 LGVKELCWDLMTF  331 (390)
T ss_pred             cCHHHHHHHHHHH
Confidence            9999999987653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.90  E-value=8e-23  Score=155.91  Aligned_cols=149  Identities=20%  Similarity=0.144  Sum_probs=109.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +.|+++|..++|||||+++|.+..   ++.+..+..+.+.....+...+  ..+.+||+||++.|...+..++.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999999633   3333444555555444444444  78999999999999888888899999999


Q ss_pred             EEEeCCC---hhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc--CHHHHHHHHhhc----CCeEEEEecCCC
Q 030880           87 VVYDVAS---RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV--SIEEGEAKSREL----NVMFIETSAKAG  156 (170)
Q Consensus        87 ~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~  156 (170)
                      +|+|+++   +++.+.+.    .+. .  .++| +++++||+|+.+...+  ..+++..+.+..    +++++++|+++|
T Consensus        79 LVVDa~~G~~~qT~ehl~----il~-~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG  151 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHLA----VLD-L--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTG  151 (581)
T ss_pred             EEEECCCCCcHHHHHHHH----HHH-H--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCC
Confidence            9999987   34443332    222 1  3577 9999999999754432  234455555544    578999999999


Q ss_pred             CChHHHhhcCC
Q 030880          157 FNIKVCLMLHP  167 (170)
Q Consensus       157 ~~i~~~~~~l~  167 (170)
                      .|++++++.|.
T Consensus       152 ~GI~eL~~~L~  162 (581)
T TIGR00475       152 QGIGELKKELK  162 (581)
T ss_pred             CCchhHHHHHH
Confidence            99999998764

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.90  E-value=7.6e-23  Score=156.19  Aligned_cols=144  Identities=16%  Similarity=0.180  Sum_probs=106.6

Q ss_pred             cCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc------chhhh--cCCcEEEE
Q 030880           16 GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------IPSYI--RDSSVAVV   87 (170)
Q Consensus        16 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~--~~~~~~i~   87 (170)
                      |++|+|||||+|++.+........+..+.+........++  .++.+|||||+.++...      ...++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999998776444455555555555555544  46899999998877543      23333  37899999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |+|.++.+..   ..+..++.   ..++|+++++||+|+.++..+. .+.+.+++.++++++++|+++|+|++++++++.
T Consensus        79 VvDat~ler~---l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~  151 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR  151 (591)
T ss_pred             EecCCcchhh---HHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence            9999875322   12222222   2469999999999986555444 456788888999999999999999999999886


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       152 ~  152 (591)
T TIGR00437       152 K  152 (591)
T ss_pred             H
Confidence            4

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=1.8e-22  Score=143.32  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=101.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCeEEEEEEEeCCCccccc--------ccchhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--------SLIPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--------~~~~~~   78 (170)
                      +.-.|+++|++|+|||||+|+|++....... .+.++..... ... ......+.+|||||.....        ......
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~-~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIR-GIV-TEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEE-EEE-EcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            4457999999999999999999987653221 1222212111 111 1233689999999965432        223345


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG  156 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~  156 (170)
                      +.++|++++|+|++++.+  ....+ +..+.   ..+.|+++|+||+|+.............+.+..+ ..++++|++++
T Consensus        82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~  156 (292)
T PRK00089         82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG  156 (292)
T ss_pred             HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence            779999999999987322  22222 22222   2368999999999996432223344555555444 58999999999


Q ss_pred             CChHHHhhcCCCC
Q 030880          157 FNIKVCLMLHPNT  169 (170)
Q Consensus       157 ~~i~~~~~~l~~~  169 (170)
                      .|+++++++|.+.
T Consensus       157 ~gv~~L~~~L~~~  169 (292)
T PRK00089        157 DNVDELLDVIAKY  169 (292)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999988653

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.89  E-value=2.5e-22  Score=153.45  Aligned_cols=156  Identities=18%  Similarity=0.194  Sum_probs=108.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC--CCC-----cc------cceeeeEEEEE--EEEE---CCeEEEEEEEeCCCcc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDK--FDN-----TY------QATIGIDFLSK--TMYL---EDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~--~~~-----~~------~~~~~~~~~~~--~~~~---~~~~~~~~i~D~~g~~   69 (170)
                      ...|++++|+.++|||||+.+|+...  ...     ..      ....+.+....  .+.+   ++..+.+++|||||+.
T Consensus         6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~   85 (600)
T PRK05433          6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV   85 (600)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence            34689999999999999999998631  110     00      01112222211  1111   4557899999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---  146 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---  146 (170)
                      +|...+..+++.+|++++|+|+++....+....|....    ..++|+++++||+|+.....  .....++...+++   
T Consensus        86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~  159 (600)
T PRK05433         86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS  159 (600)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence            99999999999999999999999865544444443322    24689999999999854321  2223344444555   


Q ss_pred             eEEEEecCCCCChHHHhhcCCCC
Q 030880          147 MFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .++.+||++|.|+++++++|.+.
T Consensus       160 ~vi~iSAktG~GI~~Ll~~I~~~  182 (600)
T PRK05433        160 DAVLVSAKTGIGIEEVLEAIVER  182 (600)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHh
Confidence            48999999999999999998653

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=1.3e-23  Score=132.62  Aligned_cols=158  Identities=22%  Similarity=0.294  Sum_probs=119.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   77 (170)
                      .....+.++++|+.++|||||+.++-....       +..-.++.+.......+  .  ...+.+||.+|++..+++|..
T Consensus        13 ~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   13 FKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             hhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHH
Confidence            344568999999999999999998764211       11122333333322222  2  568999999999999999999


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHH------HHhhcCCeEEE
Q 030880           78 YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEA------KSRELNVMFIE  150 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~~  150 (170)
                      ||..+|++|+++|+++++.|++....+..+..... .++|+++.+||.|+.+...  ..++..      ...+..+++.+
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~e~~~~rd~~~~p  166 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLAELIPRRDNPFQP  166 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhhhhcCCccCcccc
Confidence            99999999999999999999998887777766554 7899999999999865432  222222      22344578999


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +|+.+|+||++..+|+.+
T Consensus       167 vSal~gegv~egi~w~v~  184 (197)
T KOG0076|consen  167 VSALTGEGVKEGIEWLVK  184 (197)
T ss_pred             chhhhcccHHHHHHHHHH
Confidence            999999999999998753

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.89  E-value=1.5e-22  Score=123.72  Aligned_cols=159  Identities=21%  Similarity=0.271  Sum_probs=122.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ....++|++++|..++|||||+..|...... ...|+.++.......   ...+++++||.+|+...+..|..|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccce
Confidence            3467899999999999999999999876533 345665555444332   345799999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~  158 (170)
                      +|+|+|.+++..|+++...+-++..... ..+|+++.+||.|+..+..+.  +....+     +..-..+-+||+.+++|
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e--eia~klnl~~lrdRswhIq~csals~eg  166 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE--EIALKLNLAGLRDRSWHIQECSALSLEG  166 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH--HHHHhcchhhhhhceEEeeeCccccccC
Confidence            9999999999999998888888766554 789999999999986543322  111111     11224788999999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      +....+|+.+.
T Consensus       167 ~~dg~~wv~sn  177 (185)
T KOG0074|consen  167 STDGSDWVQSN  177 (185)
T ss_pred             ccCcchhhhcC
Confidence            99988888654

>cd00880 Era_like Era (E

Probab=99.89  E-value=3.1e-22  Score=129.67  Aligned_cols=151  Identities=18%  Similarity=0.133  Sum_probs=103.3

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------chhhhcCCcEE
Q 030880           14 FLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IPSYIRDSSVA   85 (170)
Q Consensus        14 v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~~~~~~~~~~   85 (170)
                      ++|++|+|||||++++.+.... ....+..+........... ....+.+||+||.......       ...+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG-PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec-CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999999986544 2222222223322222222 1468999999997765433       33467899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH---HHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|.++..+..... +.....   ..+.|+++++||+|+.........   .........+++++++|++++.|+.++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l  155 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDEL  155 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHH
Confidence            9999999886665554 222222   257999999999998755433221   123333445679999999999999999


Q ss_pred             hhcCCCC
Q 030880          163 LMLHPNT  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      ++++.+.
T Consensus       156 ~~~l~~~  162 (163)
T cd00880         156 REALIEA  162 (163)
T ss_pred             HHHHHhh
Confidence            9998765

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=4.7e-22  Score=148.27  Aligned_cols=146  Identities=20%  Similarity=0.148  Sum_probs=102.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchhhhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSYIR   80 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~~~   80 (170)
                      .+|+++|.+|+|||||+++|.+.... ....+..+.+.........+  ..+.+|||||+..        +......+++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~   79 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE   79 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            47999999999999999999987642 12233333444444454544  6899999999876        2223455678


Q ss_pred             CCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880           81 DSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (170)
                      ++|++++|+|++++.+..  .+..|+..      .+.|+++|+||+|..+.    .....++ ..+++ .++++|+++|.
T Consensus        80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~  148 (435)
T PRK00093         80 EADVILFVVDGRAGLTPADEEIAKILRK------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGR  148 (435)
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence            999999999998753332  23344332      26899999999996431    1222222 35566 48999999999


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|+++.+
T Consensus       149 gv~~l~~~I~~  159 (435)
T PRK00093        149 GIGDLLDAILE  159 (435)
T ss_pred             CHHHHHHHHHh
Confidence            99999998864

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.89  E-value=1.4e-21  Score=152.62  Aligned_cols=151  Identities=17%  Similarity=0.194  Sum_probs=110.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------chh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS   77 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   77 (170)
                      +.++|+++|.+++|||||+|++++........+..  +...+.........++.+||+||...+...          ...
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGv--Tve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGV--TVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCc--eEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            45799999999999999999999865533223333  333333344555678999999998766432          122


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      ++  ..+|++++|+|.++.+.-.   .+..++.+   .++|+++++||+|+.+.+.+. ...+++.+.+|++++++|+++
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e---~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~  152 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL---YLTLQLLE---LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTR  152 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH---HHHHHHHH---cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeec
Confidence            32  4799999999998865422   23333332   469999999999986555443 456788889999999999999


Q ss_pred             CCChHHHhhcCC
Q 030880          156 GFNIKVCLMLHP  167 (170)
Q Consensus       156 ~~~i~~~~~~l~  167 (170)
                      |+|++++++.+.
T Consensus       153 g~GIdeL~~~I~  164 (772)
T PRK09554        153 GRGIEALKLAID  164 (772)
T ss_pred             CCCHHHHHHHHH
Confidence            999999988764

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=6.4e-23  Score=136.89  Aligned_cols=157  Identities=24%  Similarity=0.261  Sum_probs=104.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ...+|+++|+.++|||||+++|+.......                  .....+................++++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            347899999999999999999996432110                  00111111112222112556789999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHH-HHHhhc---
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGE-AKSREL---  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~~~~~---  144 (170)
                      .|.......++.+|++|+|+|+.+.-.. .....+..+..   .++|+++++||+|+...... ..++.. .+.+..   
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~---~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~  157 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILRE---LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGEN  157 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHH---TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTST
T ss_pred             ceeecccceecccccceeeeeccccccc-ccccccccccc---cccceEEeeeeccchhhhHHHHHHHHHHHhccccccC
Confidence            9988888889999999999999866332 22333333333   45889999999999732111 112222 333333   


Q ss_pred             ---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          145 ---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       145 ---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                         .++++.+|+++|.|++++++.|.+
T Consensus       158 ~~~~~~vi~~Sa~~g~gi~~Ll~~l~~  184 (188)
T PF00009_consen  158 GEEIVPVIPISALTGDGIDELLEALVE  184 (188)
T ss_dssp             TTSTEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             ccccceEEEEecCCCCCHHHHHHHHHH
Confidence               258999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.88  E-value=9.9e-22  Score=145.88  Aligned_cols=156  Identities=18%  Similarity=0.204  Sum_probs=104.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC--CCCC-----------------------------cccceeeeEEEEEEEEE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYD--KFDN-----------------------------TYQATIGIDFLSKTMYL   53 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~   53 (170)
                      .+.+.++|+++|+.++|||||+++|+..  ....                             +.....+.+...  ...
T Consensus         3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~   80 (426)
T TIGR00483         3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKF   80 (426)
T ss_pred             CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEE
Confidence            3556799999999999999999999862  1110                             011222333333  333


Q ss_pred             CCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc-
Q 030880           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-  131 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-  131 (170)
                      ......+.+||+||+++|.......++.+|++++|+|++++++..... .+...+.... ...|+++++||+|+.+... 
T Consensus        81 ~~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~-~~~~iIVviNK~Dl~~~~~~  159 (426)
T TIGR00483        81 ETDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL-GINQLIVAINKMDSVNYDEE  159 (426)
T ss_pred             ccCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc-CCCeEEEEEEChhccCccHH
Confidence            445578999999999988766666788999999999999875432211 1111122222 2357899999999964221 


Q ss_pred             ---cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHh
Q 030880          132 ---VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus       132 ---~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  163 (170)
                         ....++..+++..+     ++++++|+++|.|+.+.+
T Consensus       160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence               12345666666655     579999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.88  E-value=1.4e-21  Score=145.13  Aligned_cols=156  Identities=18%  Similarity=0.200  Sum_probs=102.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CcccceeeeEEEEEEEEE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYL   53 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   53 (170)
                      +..+.++|+++|++++|||||+++|++....                               .+..+..+.+....  ..
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~--~~   79 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHK--KF   79 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeE--EE
Confidence            4556799999999999999999999853211                               01122233333322  33


Q ss_pred             CCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--
Q 030880           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--  131 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--  131 (170)
                      ....+.+.+|||||+++|.......++.+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+...  
T Consensus        80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~  158 (425)
T PRK12317         80 ETDKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEKR  158 (425)
T ss_pred             ecCCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHHH
Confidence            3456789999999998887666666789999999999987322222222222222222 1246899999999864221  


Q ss_pred             --cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHh
Q 030880          132 --VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus       132 --~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  163 (170)
                        ...+++..+.+..+     ++++++|+++|.|+++.+
T Consensus       159 ~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        159 YEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              12345555555554     579999999999998744

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=2.3e-21  Score=144.35  Aligned_cols=145  Identities=22%  Similarity=0.209  Sum_probs=101.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccchhhhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYIRD   81 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~~~   81 (170)
                      +|+++|.+|+|||||+|+|.+.... ....+..+.+.........+  ..+.+|||||..        .+......++++
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~   78 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE   78 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence            5899999999999999999987632 12233333344444444444  469999999963        233445667889


Q ss_pred             CcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCC
Q 030880           82 SSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (170)
                      +|++++|+|+.++.+...  +..|+.   .   .++|+++|+||+|..+....    ... ...++. .++.+||.+|.|
T Consensus        79 ad~vl~vvD~~~~~~~~d~~i~~~l~---~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~g  147 (429)
T TIGR03594        79 ADVILFVVDGREGLTPEDEEIAKWLR---K---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRG  147 (429)
T ss_pred             CCEEEEEEeCCCCCCHHHHHHHHHHH---H---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCC
Confidence            999999999987533322  233332   2   35899999999998644321    112 345666 799999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++++++.+
T Consensus       148 v~~ll~~i~~  157 (429)
T TIGR03594       148 IGDLLDAILE  157 (429)
T ss_pred             hHHHHHHHHH
Confidence            9999998754

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.87  E-value=5.4e-21  Score=131.23  Aligned_cols=150  Identities=17%  Similarity=0.199  Sum_probs=100.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-------ccchhhhcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~   83 (170)
                      +++++|++|+|||||+++|.+........+..+.+.....+...  +..+++||+||..+..       .....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~--~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK--GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC--CeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            78999999999999999999875432222333333433333333  3679999999975432       12345688999


Q ss_pred             EEEEEEeCCChh-hHHhHHHHHHH--------------------------------------------HHHh--------
Q 030880           84 VAVVVYDVASRQ-SFLNTSKWIDE--------------------------------------------VRTE--------  110 (170)
Q Consensus        84 ~~i~v~d~~~~~-s~~~~~~~~~~--------------------------------------------~~~~--------  110 (170)
                      ++++|+|+++++ ..+.+...+..                                            ...+        
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            999999998765 33333333221                                            1000        


Q ss_pred             -----------c--CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          111 -----------R--GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       111 -----------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                                 .  ...+|+++|+||+|+.+     .+++..++..  ..++++|+++|.|++++|+.|.+.
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~  224 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDK  224 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHH
Confidence                       1  13478999999999853     3445555543  458999999999999999987643

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.87  E-value=1.4e-20  Score=120.37  Aligned_cols=156  Identities=25%  Similarity=0.314  Sum_probs=115.8

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc--------ccc----eeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT--------YQA----TIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      .....+.||++.|+.++||||+++++........        +..    +...++..  ... .....+.+++||||+++
T Consensus         5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--~~~-~~~~~v~LfgtPGq~RF   81 (187)
T COG2229           5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--IEL-DEDTGVHLFGTPGQERF   81 (187)
T ss_pred             cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--eEE-cCcceEEEecCCCcHHH
Confidence            3456788999999999999999999998764211        111    11111111  111 23357999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc--CCeEE
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFI  149 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~  149 (170)
                      .-+|..+.+++.++|+++|.+.+..+ .....++.+....  .+|++|++||.|+.+.+  +.+..++.....  ..+.+
T Consensus        82 ~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi  156 (187)
T COG2229          82 KFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSRN--PIPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVI  156 (187)
T ss_pred             HHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhcc--CCCEEEEeeccccCCCC--CHHHHHHHHHhccCCCcee
Confidence            99999999999999999999999888 4444444444433  29999999999997654  455565555544  78999


Q ss_pred             EEecCCCCChHHHhhcCC
Q 030880          150 ETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~  167 (170)
                      +.++.+++|..+.++.+.
T Consensus       157 ~~~a~e~~~~~~~L~~ll  174 (187)
T COG2229         157 EIDATEGEGARDQLDVLL  174 (187)
T ss_pred             eeecccchhHHHHHHHHH
Confidence            999999999998877654

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=1e-20  Score=141.06  Aligned_cols=154  Identities=20%  Similarity=0.164  Sum_probs=102.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-----------c
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-----------I   75 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-----------~   75 (170)
                      ..++|+++|.+++|||||++++++... .....+..+.+.........  +..+.+|||||.......           .
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~--~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD--GQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC--CeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            469999999999999999999997653 22333444444443334333  356789999996432221           1


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHH-HHHhhcCCeEEEEe
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGE-AKSRELNVMFIETS  152 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~-~~~~~~~~~~~~~s  152 (170)
                      ..+++.+|++++|+|++++.+..... ++..+..   .++|+++++||+|+.+.....  ..+.. .+.....++++++|
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~S  325 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFIS  325 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEe
Confidence            24578999999999999876655432 2222222   468999999999986432110  11111 11112246999999


Q ss_pred             cCCCCChHHHhhcCC
Q 030880          153 AKAGFNIKVCLMLHP  167 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~  167 (170)
                      |++|.|++++|+.+.
T Consensus       326 A~~~~gv~~l~~~i~  340 (435)
T PRK00093        326 ALTGQGVDKLLEAID  340 (435)
T ss_pred             CCCCCCHHHHHHHHH
Confidence            999999999998764

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.86  E-value=1.1e-20  Score=143.63  Aligned_cols=152  Identities=19%  Similarity=0.186  Sum_probs=99.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc----eeeeEEEEEEEE------------ECCeEEEEEEEeCCCccccc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA----TIGIDFLSKTMY------------LEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~i~D~~g~~~~~   72 (170)
                      ..-|+++|.+++|||||+++|.+..+......    +.+.........            +......+.+|||||++.|.
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~   83 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT   83 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence            34699999999999999999998765432211    111111111100            00011238899999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc------------CHHH-
Q 030880           73 SLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------------SIEE-  136 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~-  136 (170)
                      .++..+++.+|++++|+|+++   +++++.+..    +.   ..++|+++++||+|+.+....            .... 
T Consensus        84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~---~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        84 NLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR---MYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH---HcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            999999999999999999987   455443322    11   136899999999998642110            0000 


Q ss_pred             -----------HHHHHh------------hc--CCeEEEEecCCCCChHHHhhcCC
Q 030880          137 -----------GEAKSR------------EL--NVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       137 -----------~~~~~~------------~~--~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                                 ..++.+            ..  .++++++||++|+|+++++++|.
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~  212 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLA  212 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHH
Confidence                       001111            11  35899999999999999998764

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG1159 Era GTPase [General function prediction only]

Probab=99.86  E-value=6.2e-21  Score=131.06  Aligned_cols=156  Identities=16%  Similarity=0.209  Sum_probs=103.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSY   78 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~   78 (170)
                      .+.--|+++|.|++|||||+|++++.+..-......++......+. ..+...+.++||||..+-..        .....
T Consensus         4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~-t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s   82 (298)
T COG1159           4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIV-TTDNAQIIFVDTPGIHKPKHALGELMNKAARSA   82 (298)
T ss_pred             ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEE-EcCCceEEEEeCCCCCCcchHHHHHHHHHHHHH
Confidence            4456799999999999999999999876433222222122222222 23366899999999554322        23444


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHH-HHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAG  156 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~  156 (170)
                      ++.+|++++|.|++++..-  -..+ ++.+..   .+.|+++++||+|.................... ..++++||++|
T Consensus        83 l~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          83 LKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             hccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            7799999999999874322  2222 233322   358999999999987665422233333333333 38999999999


Q ss_pred             CChHHHhhcCCC
Q 030880          157 FNIKVCLMLHPN  168 (170)
Q Consensus       157 ~~i~~~~~~l~~  168 (170)
                      .|++.+.+.+.+
T Consensus       158 ~n~~~L~~~i~~  169 (298)
T COG1159         158 DNVDTLLEIIKE  169 (298)
T ss_pred             CCHHHHHHHHHH
Confidence            999999887754

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.3e-22  Score=123.30  Aligned_cols=158  Identities=21%  Similarity=0.295  Sum_probs=119.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ..+.+++++|..|+||||++.++.-+....+ .|+.++....    +..++.++++||.+|+-..+..|+.|+.+.+.+|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvgevvtt-kPtigfnve~----v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGEVVTT-KPTIGFNVET----VPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCccccc-CCCCCcCccc----cccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            3789999999999999999999887765533 5555544332    3457789999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCccc---cCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQ---VSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      +|+|.+|..........+..+.. ..-.+..+++++||.|.....-   +......+..+..-+.++++||.+|+|++..
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            99999999877776555544433 3335677888999999854321   1112222223333478999999999999999


Q ss_pred             hhcCCCC
Q 030880          163 LMLHPNT  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      .+||.+.
T Consensus       171 ~DWL~~~  177 (182)
T KOG0072|consen  171 MDWLQRP  177 (182)
T ss_pred             HHHHHHH
Confidence            9998754

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=2.3e-20  Score=145.91  Aligned_cols=152  Identities=19%  Similarity=0.132  Sum_probs=100.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~~   78 (170)
                      ...+|+++|.+++|||||+|+|++.... ....+..+.+.........+  ..+.+|||||.+.        +......+
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~  351 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA  351 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence            3468999999999999999999986532 12233343343333333333  5788999999763        22233456


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ++.+|++++|+|+++.-+..+ ..|...+..   .++|+++|+||+|+....   ......+....+ ..+++||++|.|
T Consensus       352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~G  423 (712)
T PRK09518        352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGRG  423 (712)
T ss_pred             HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCCC
Confidence            789999999999976422111 133333332   469999999999985431   122222222333 357899999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      ++++|++|.+.
T Consensus       424 I~eLl~~i~~~  434 (712)
T PRK09518        424 VGDLLDEALDS  434 (712)
T ss_pred             chHHHHHHHHh
Confidence            99999988654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.86  E-value=2e-21  Score=143.00  Aligned_cols=167  Identities=23%  Similarity=0.316  Sum_probs=126.4

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |+...-.+.+||+++|+.|+||||||-.|....+++.-.+-...-...  .......+..++.|++..++-+......++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHh
Confidence            666777889999999999999999999999988876644332211112  223344566899999866554445566789


Q ss_pred             CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHH-HHHHHHhhcCC--eEEEEecC
Q 030880           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIE-EGEAKSRELNV--MFIETSAK  154 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~--~~~~~s~~  154 (170)
                      ++|++.++|+++++++++.+ ..|+..+++..+  .++|+|+|+||.|.......+.+ ....++.++.-  ..++|||+
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~  158 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL  158 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence            99999999999999999996 679999988774  68999999999998655443222 24455554442  56999999


Q ss_pred             CCCChHHHhhcCCCC
Q 030880          155 AGFNIKVCLMLHPNT  169 (170)
Q Consensus       155 ~~~~i~~~~~~l~~~  169 (170)
                      +..++.++|....+.
T Consensus       159 ~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  159 TLANVSELFYYAQKA  173 (625)
T ss_pred             hhhhhHhhhhhhhhe
Confidence            999999999876554

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.86  E-value=5.4e-21  Score=140.91  Aligned_cols=160  Identities=21%  Similarity=0.145  Sum_probs=104.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEE--E----------------EEEEECC------eEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFL--S----------------KTMYLED------RTVR   59 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~--~----------------~~~~~~~------~~~~   59 (170)
                      .+.++|+++|..++|||||+++|.+.....   +.....+....  .                ....+++      ....
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            467899999999999999999997532211   11111111110  0                0000011      1467


Q ss_pred             EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHH
Q 030880           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEG  137 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~  137 (170)
                      +++||+||+++|...+......+|++++|+|++++.........+..+...  ...|+++++||+|+.+....  ..+++
T Consensus        82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII--GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc--CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            999999999999888888888999999999998643112223333333221  12468999999999653221  12344


Q ss_pred             HHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          138 EAKSREL---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       138 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..+....   +++++++|+++|.|+++++++|.+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~  193 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEK  193 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHH
Confidence            4444433   578999999999999999998865

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.86  E-value=7.3e-21  Score=128.80  Aligned_cols=147  Identities=22%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc-------------------------------ccceeeeEEEEEEEEECCeEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-------------------------------YQATIGIDFLSKTMYLEDRTVR   59 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~   59 (170)
                      ||+++|.+++|||||+++|+.....-.                               ..+..+.+....  .+...+.+
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~--~~~~~~~~   78 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYR--YFSTPKRK   78 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeeccee--EEecCCce
Confidence            689999999999999999986322100                               001122222222  22234457


Q ss_pred             EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc----CHH
Q 030880           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----SIE  135 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~  135 (170)
                      +.+|||||++++.......++.+|++++|+|++++..-. .......+ ... ...++++++||+|+.+....    ...
T Consensus        79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~-~~~-~~~~iIvviNK~D~~~~~~~~~~~i~~  155 (208)
T cd04166          79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYIL-SLL-GIRHVVVAVNKMDLVDYSEEVFEEIVA  155 (208)
T ss_pred             EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHH-HHc-CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence            899999999887766667789999999999998653211 11111212 222 12457778999998643211    123


Q ss_pred             HHHHHHhhcCC---eEEEEecCCCCChHHH
Q 030880          136 EGEAKSRELNV---MFIETSAKAGFNIKVC  162 (170)
Q Consensus       136 ~~~~~~~~~~~---~~~~~s~~~~~~i~~~  162 (170)
                      +...+.+.++.   +++.+||++|.|+.+.
T Consensus       156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         156 DYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence            45555566663   5899999999999753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.86  E-value=1.3e-20  Score=147.40  Aligned_cols=153  Identities=21%  Similarity=0.233  Sum_probs=104.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------cccc-c
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSL-I   75 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~-~   75 (170)
                      ...+|+++|.+++|||||++++++.... ....+.++.+.....+...+.  .+.+|||||..+          |..+ .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence            4589999999999999999999987642 222344445555555555554  467999999542          1111 1


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH-HHhh----cCCeEEE
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-KSRE----LNVMFIE  150 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~~  150 (170)
                      ..+++.+|++++|+|++++.+.....- +..+..   .++|+++|+||+|+.+...  .+.... +...    ...+++.
T Consensus       527 ~~~i~~advvilViDat~~~s~~~~~i-~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        527 QAAIERSELALFLFDASQPISEQDLKV-MSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            234688999999999998877766543 333322   4689999999999965322  111221 1111    1247799


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +||++|.|++++|+.+.+
T Consensus       601 iSAktg~gv~~L~~~i~~  618 (712)
T PRK09518        601 LSAKTGWHTNRLAPAMQE  618 (712)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            999999999999998754

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.85  E-value=1e-20  Score=144.40  Aligned_cols=156  Identities=16%  Similarity=0.218  Sum_probs=108.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCCCcc------------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD--KFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   75 (170)
                      -||+++|+.++|||||+++|+..  .+....            ....+.+.......+...++++++|||||+..|...+
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev   81 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV   81 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence            37999999999999999999863  221111            1112233333333344456899999999999999889


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHh-------hcCCe
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM  147 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  147 (170)
                      ..+++.+|++++|+|+++. .......|+..+..   .++|+++++||+|+...+.. ..++...+..       +..++
T Consensus        82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~---~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~p  157 (594)
T TIGR01394        82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE---LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFP  157 (594)
T ss_pred             HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH---CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCc
Confidence            9999999999999999864 23334555555543   45899999999998654321 1233333332       33568


Q ss_pred             EEEEecCCCC----------ChHHHhhcCCCC
Q 030880          148 FIETSAKAGF----------NIKVCLMLHPNT  169 (170)
Q Consensus       148 ~~~~s~~~~~----------~i~~~~~~l~~~  169 (170)
                      ++.+|+++|.          |+..+|+.+.+.
T Consensus       158 vl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~  189 (594)
T TIGR01394       158 IVYASGRAGWASLDLDDPSDNMAPLFDAIVRH  189 (594)
T ss_pred             EEechhhcCcccccCcccccCHHHHHHHHHHh
Confidence            9999999995          799998887653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.85  E-value=1.8e-20  Score=117.33  Aligned_cols=136  Identities=21%  Similarity=0.270  Sum_probs=97.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc----cccccchhhhcCCcEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----RFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----~~~~~~~~~~~~~~~~i   86 (170)
                      ||+++|+.|+|||||+++|.+...  .+..+....+            .=.++||||.-    .+.........+||.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY------------YDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe------------cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999988654  2222322221            11358999932    23333344456899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++.|++++.+.     +-..+...+  ..|+|=|+||+|+.. .....+.++++.+..|+ .+|.+|+.+|+|++++.++
T Consensus        69 ll~dat~~~~~-----~pP~fa~~f--~~pvIGVITK~Dl~~-~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~  140 (143)
T PF10662_consen   69 LLQDATEPRSV-----FPPGFASMF--NKPVIGVITKIDLPS-DDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDY  140 (143)
T ss_pred             EEecCCCCCcc-----CCchhhccc--CCCEEEEEECccCcc-chhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHH
Confidence            99999987432     112222222  489999999999962 23456788889999998 7899999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       141 L~~  143 (143)
T PF10662_consen  141 LEE  143 (143)
T ss_pred             HhC
Confidence            853

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.85  E-value=1.7e-20  Score=138.29  Aligned_cols=162  Identities=20%  Similarity=0.155  Sum_probs=101.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEE--EEE----------------EEC------CeE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLS--KTM----------------YLE------DRT   57 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~--~~~----------------~~~------~~~   57 (170)
                      ...+.++|+++|+.++|||||+.+|.+....   .+.....+.....  ...                ..+      ...
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            3456799999999999999999999653111   1111111111110  000                000      013


Q ss_pred             EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHH
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIE  135 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~  135 (170)
                      ..+.+|||||+++|..........+|++++|+|++++.........+..+.. . ...|+++++||+|+.++...  ..+
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~-~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-I-GIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-c-CCCcEEEEEEeeccccchhHHHHHH
Confidence            5799999999988876655556778999999999964211111112222221 1 12468999999999654322  123


Q ss_pred             HHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          136 EGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       136 ~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++..+.+..   +++++++|+++|.|+++++++|.+
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~  198 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEE  198 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence            444444432   578999999999999999998865

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=7.3e-24  Score=135.21  Aligned_cols=159  Identities=36%  Similarity=0.547  Sum_probs=135.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      -++++++|..|+|||+++.+.....+...|..+.+.+..-+....+. ..+++++||..||+++..+...|++.+++.++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            47999999999999999999999988888888888887766665544 45689999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc----CCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCC-eEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER----GSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNV-MFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  161 (170)
                      |||+++.-+|+....|...+....    +..+|+++.+||||....... ......++++++|. .++++|++.+.+++|
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            999999999999999999885543    356788999999998643322 25778899999997 899999999999998


Q ss_pred             HhhcCC
Q 030880          162 CLMLHP  167 (170)
Q Consensus       162 ~~~~l~  167 (170)
                      .-..|.
T Consensus       185 a~r~lV  190 (229)
T KOG4423|consen  185 AQRELV  190 (229)
T ss_pred             HHHHHH
Confidence            766554

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.85  E-value=2.9e-20  Score=121.65  Aligned_cols=151  Identities=23%  Similarity=0.313  Sum_probs=96.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccchhhhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLIPSYIR   80 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~~~~~~   80 (170)
                      .|+++|++|+|||||++.+.++.......++.+.+........++   .+.+||+||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            478999999999999999996544433333333333333332232   899999999433          2333334443


Q ss_pred             ---CCcEEEEEEeCCChhhH--HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHh--hcCCeEEEE
Q 030880           81 ---DSSVAVVVYDVASRQSF--LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSR--ELNVMFIET  151 (170)
Q Consensus        81 ---~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~~  151 (170)
                         +.+.+++++|..+..+.  ..+..|+..      .+.|+++++||+|+.......  ........+  ....+++++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  151 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEE------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILF  151 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHH------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEE
Confidence               46788999998765322  223334332      248999999999985432211  122222232  334589999


Q ss_pred             ecCCCCChHHHhhcCCCCC
Q 030880          152 SAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~~i  170 (170)
                      |++++.|+++++++|.+.+
T Consensus       152 Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         152 SSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             ecCCCCCHHHHHHHHHHhC
Confidence            9999999999999987653

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10218 GTP-binding protein; Provisional

Probab=99.85  E-value=8e-20  Score=139.43  Aligned_cols=156  Identities=17%  Similarity=0.195  Sum_probs=109.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc--CCCCCcc------------cceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY--DKFDNTY------------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      -.||+++|+.++|||||+++|+.  +.+....            ....+.+.......+....+++.+|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999997  3322211            123344455555555566789999999999999999


Q ss_pred             chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHh-------hcCC
Q 030880           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNV  146 (170)
Q Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~  146 (170)
                      +..+++.+|++++|+|+++.... ....++..+..   .++|.++++||+|....... ..+++..+..       ...+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~  160 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF  160 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCC
Confidence            99999999999999999865322 22233333322   46888999999998644321 1233333332       2346


Q ss_pred             eEEEEecCCCC----------ChHHHhhcCCC
Q 030880          147 MFIETSAKAGF----------NIKVCLMLHPN  168 (170)
Q Consensus       147 ~~~~~s~~~~~----------~i~~~~~~l~~  168 (170)
                      +++.+|+++|.          |+..+++.+..
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~  192 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVD  192 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHH
Confidence            79999999998          57888777654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.6e-21  Score=119.32  Aligned_cols=156  Identities=17%  Similarity=0.235  Sum_probs=120.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +.-|++++|..++|||||++.|...+... +.||...+.  ....+  .+.+++.+|.+|+.+.+..|..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlHPTS--E~l~I--g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTS--EELSI--GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccccccc-cCCCcCCCh--HHhee--cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            45689999999999999999998876532 234433222  12222  34789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHH------Hhh--------c---CCeEE
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAK------SRE--------L---NVMFI  149 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~--------~---~~~~~  149 (170)
                      .+|+.+.+.|.+.+..++.+..... ..+|+++.+||+|.+.+.  +.++.+..      .-.        .   .+..+
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evf  171 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVF  171 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEEE
Confidence            9999999999999999988877764 789999999999987654  32332211      111        0   13679


Q ss_pred             EEecCCCCChHHHhhcCCCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      .||...+.|..+.|.|+.+.|
T Consensus       172 mcsi~~~~gy~e~fkwl~qyi  192 (193)
T KOG0077|consen  172 MCSIVRKMGYGEGFKWLSQYI  192 (193)
T ss_pred             EEEEEccCccceeeeehhhhc
Confidence            999999999999999998764

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.84  E-value=7.9e-20  Score=122.17  Aligned_cols=145  Identities=15%  Similarity=0.103  Sum_probs=95.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      .++|+++|..++|||||+++|++...                ..+..+..  +..............+.++||||+..+.
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~--Ti~~~~~~~~~~~~~i~~iDtPG~~~~~   79 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGI--TINTAHVEYETANRHYAHVDCPGHADYI   79 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCc--cEEeeeeEecCCCeEEEEEECcCHHHHH
Confidence            58999999999999999999986411                00011222  2222223334455688999999998887


Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcC---
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN---  145 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  145 (170)
                      ......+..+|++++|+|+...-.- .....+..+..   .++| +++++||+|+......   ...++..+....+   
T Consensus        80 ~~~~~~~~~~D~~ilVvda~~g~~~-~~~~~~~~~~~---~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~  155 (195)
T cd01884          80 KNMITGAAQMDGAILVVSATDGPMP-QTREHLLLARQ---VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG  155 (195)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc
Confidence            7777778999999999998764221 12222233322   3466 7788999998633221   1234555555443   


Q ss_pred             --CeEEEEecCCCCCh
Q 030880          146 --VMFIETSAKAGFNI  159 (170)
Q Consensus       146 --~~~~~~s~~~~~~i  159 (170)
                        ++++.+|+++|.++
T Consensus       156 ~~v~iipiSa~~g~n~  171 (195)
T cd01884         156 DNTPIVRGSALKALEG  171 (195)
T ss_pred             cCCeEEEeeCccccCC
Confidence              68999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.84  E-value=1.1e-19  Score=138.63  Aligned_cols=153  Identities=22%  Similarity=0.251  Sum_probs=98.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc----ceeeeEEEEEEEE--ECCeE-----E-----EEEEEeCCCccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ----ATIGIDFLSKTMY--LEDRT-----V-----RLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~-----~-----~~~i~D~~g~~~   70 (170)
                      ..+..|+++|++++|||||+++|.+........    ++.+.........  ..+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            344579999999999999999998765432221    1222111111100  00111     1     278999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc----C--------HH
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV----S--------IE  135 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~--------~~  135 (170)
                      |..++...++.+|++++|+|+++   +++++.+..    +.   ..++|+++++||+|+......    .        ..
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~---~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~  156 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK---RRKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ  156 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH---HcCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence            99888888999999999999987   555544432    11   146899999999998532110    0        00


Q ss_pred             -----------HHHHHHhh---------------cCCeEEEEecCCCCChHHHhhcC
Q 030880          136 -----------EGEAKSRE---------------LNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus       136 -----------~~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                                 +.......               ..++++++|+++|+|++++++.+
T Consensus       157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i  213 (586)
T PRK04004        157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVL  213 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHH
Confidence                       01111111               12579999999999999988765

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.84  E-value=8.3e-20  Score=140.01  Aligned_cols=153  Identities=16%  Similarity=0.129  Sum_probs=101.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC---CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK---FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      -|.++|..++|||||+++|.+..   +..+.....+.+......... .+..+.+||+||++.|.......+.++|++++
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~-~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP-DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC-CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            47889999999999999998632   222332333333322222222 23458999999999998777788899999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccC--HHHHHHHHhhcC---CeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS--IEEGEAKSRELN---VMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~---~~~~~~s~~~~~~i~~  161 (170)
                      |+|+++.-. ......+..+ ..  .++| ++||+||+|+.++....  .+++..+....+   .+++++|+++|.|+++
T Consensus        81 VVda~eg~~-~qT~ehl~il-~~--lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         81 VVACDDGVM-AQTREHLAIL-QL--TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEECCCCCc-HHHHHHHHHH-HH--cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            999986311 1112222222 22  2355 57899999996543221  244555555444   6899999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +++.|.+
T Consensus       157 L~~~L~~  163 (614)
T PRK10512        157 LREHLLQ  163 (614)
T ss_pred             HHHHHHH
Confidence            9998754

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.83  E-value=7.4e-20  Score=124.79  Aligned_cols=147  Identities=21%  Similarity=0.222  Sum_probs=92.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-------------------------------CcccceeeeEEEEEEEEECCeEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD-------------------------------NTYQATIGIDFLSKTMYLEDRTVR   59 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~   59 (170)
                      +|+++|+.++|||||+.+|+.....                               .+.....+.+.....+  .....+
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~--~~~~~~   78 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKF--ETEKYR   78 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEE--eeCCeE
Confidence            5899999999999999999742110                               0001112222222223  334578


Q ss_pred             EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhh---HH---hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc--cc
Q 030880           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQ  131 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~  131 (170)
                      +.+|||||+..+...+...++.+|++++|+|+++...   +.   .....+... ... ...|+++++||+|+...  ..
T Consensus        79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~iiivvNK~Dl~~~~~~~  156 (219)
T cd01883          79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTL-GVKQLIVAVNKMDDVTVNWSE  156 (219)
T ss_pred             EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHc-CCCeEEEEEEccccccccccH
Confidence            9999999998887767777889999999999987421   11   122222222 221 23688999999998632  11


Q ss_pred             c----CHHHHHHHHhhc-----CCeEEEEecCCCCChHH
Q 030880          132 V----SIEEGEAKSREL-----NVMFIETSAKAGFNIKV  161 (170)
Q Consensus       132 ~----~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~  161 (170)
                      .    ..+++.......     +++++.+||++|.|+++
T Consensus       157 ~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~~  195 (219)
T cd01883         157 ERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLIE  195 (219)
T ss_pred             HHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCCc
Confidence            1    122333333443     36799999999999874

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.83  E-value=1.4e-19  Score=131.14  Aligned_cols=149  Identities=23%  Similarity=0.235  Sum_probs=109.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------hhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~   78 (170)
                      ..++++++|.|++|||||+|.|++... .-+..|.++.+.....+.++|  +.+.+.||+|.++.....        ...
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            358999999999999999999998654 234467777788888887777  778999999977654432        334


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      +++||.+++++|.+.+.+-....-  ..   ....+.|+++|.||.|+..+......     ....+.+++.+|+++|+|
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~--~~---~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~iSa~t~~G  363 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL--IE---LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIISISAKTGEG  363 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH--HH---hcccCCCEEEEEechhcccccccchh-----hccCCCceEEEEecCccC
Confidence            779999999999998622211111  11   22367999999999999765442211     223345789999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++.+.+.|.+
T Consensus       364 l~~L~~~i~~  373 (454)
T COG0486         364 LDALREAIKQ  373 (454)
T ss_pred             HHHHHHHHHH
Confidence            9999887643

>cd04167 Snu114p Snu114p subfamily

Probab=99.83  E-value=1.3e-19  Score=123.16  Aligned_cols=113  Identities=26%  Similarity=0.311  Sum_probs=78.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc-----------------cceeeeEEEE--EEEEE---CCeEEEEEEEeCCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-----------------QATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQ   68 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~   68 (170)
                      +|+++|+.|+|||||+++|+........                 ....+.+...  .....   .+..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            6899999999999999999875432110                 0011111111  11111   345688999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      .++......++..+|++++|+|+++..+... ..++.....   .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccC
Confidence            9998888888999999999999987765432 333333322   358999999999975

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=2.8e-19  Score=129.27  Aligned_cols=149  Identities=20%  Similarity=0.153  Sum_probs=101.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccchhhh
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI   79 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   79 (170)
                      ..|+++|.|++|||||+|+|++.+.. .+..|..+.+.......+.+.  .+.++||+|.+.-.         ......+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai   81 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI   81 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence            57999999999999999999987653 222455555655555555553  49999999966322         1234457


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCC
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (170)
                      ..||+++||+|....-+  .....+..+..  ..++|+++|+||+|-...     ++.....-.+|. .++.+||.+|.|
T Consensus        82 ~eADvilfvVD~~~Git--~~D~~ia~~Lr--~~~kpviLvvNK~D~~~~-----e~~~~efyslG~g~~~~ISA~Hg~G  152 (444)
T COG1160          82 EEADVILFVVDGREGIT--PADEEIAKILR--RSKKPVILVVNKIDNLKA-----EELAYEFYSLGFGEPVPISAEHGRG  152 (444)
T ss_pred             HhCCEEEEEEeCCCCCC--HHHHHHHHHHH--hcCCCEEEEEEcccCchh-----hhhHHHHHhcCCCCceEeehhhccC
Confidence            79999999999875422  22222222222  246999999999997421     222222335565 789999999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      ++++.+.+.+.
T Consensus       153 i~dLld~v~~~  163 (444)
T COG1160         153 IGDLLDAVLEL  163 (444)
T ss_pred             HHHHHHHHHhh
Confidence            99999987653

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.81  E-value=1.1e-18  Score=119.02  Aligned_cols=153  Identities=15%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----------------------eeeeEEEEEE-------------EEEC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKT-------------MYLE   54 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~   54 (170)
                      ||+++|+.++|||||++++..+.+.+....                       ..+++.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999997654321110                       0111110000             0112


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      .....+.++|+||++.|.......+.  .+|++++|+|+..+.. .....++..+..   .++|+++++||+|+.++...
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~---~~ip~ivvvNK~D~~~~~~~  156 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA---LNIPVFVVVTKIDLAPANIL  156 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEECccccCHHHH
Confidence            23457999999999988765555554  7899999999876532 122233333322   35889999999998654322


Q ss_pred             C--HHHHHHHHhh--------------------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880          133 S--IEEGEAKSRE--------------------------LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       133 ~--~~~~~~~~~~--------------------------~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .  ..+...+.+.                          ..++++.+|+.+|.|++++...|.
T Consensus       157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~  219 (224)
T cd04165         157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN  219 (224)
T ss_pred             HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence            1  2223333221                          123899999999999999988764

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12736 elongation factor Tu; Reviewed

Probab=99.80  E-value=7.8e-19  Score=129.07  Aligned_cols=156  Identities=17%  Similarity=0.127  Sum_probs=101.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|+.++|||||+++|++....                .+.....+.+.  ...........+.++||||++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~~~i~~iDtPGh~   86 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEKRHYAHVDCPGHA   86 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCCcEEEEEECCCHH
Confidence            345789999999999999999999863110                01112222222  233344445678999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccC---HHHHHHHHhhcC
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (170)
                      +|.......+..+|++++|+|++....- .....+..+..   .++| +++++||+|+.+..+..   .++...+.+..+
T Consensus        87 ~f~~~~~~~~~~~d~~llVvd~~~g~~~-~t~~~~~~~~~---~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         87 DYVKNMITGAAQMDGAILVVAATDGPMP-QTREHILLARQ---VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            8877677777899999999998864211 12222222222   3577 67889999986432221   234555555554


Q ss_pred             -----CeEEEEecCCCC--------ChHHHhhcCC
Q 030880          146 -----VMFIETSAKAGF--------NIKVCLMLHP  167 (170)
Q Consensus       146 -----~~~~~~s~~~~~--------~i~~~~~~l~  167 (170)
                           ++++.+|+++|.        ++.++++.|.
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~  197 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVD  197 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHH
Confidence                 589999999983        5777777654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.80  E-value=9.9e-19  Score=120.28  Aligned_cols=159  Identities=16%  Similarity=0.152  Sum_probs=102.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc------cc------cc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER------FR------SL   74 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~------~~------~~   74 (170)
                      .+.++|+++|.|++|||||.|.+++.+.........+ +.....-.+......+.|+||||--.      +.      ..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~T-Tr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHT-TRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccc-eeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            4568999999999999999999999988765544443 22233333455566899999999221      11      11


Q ss_pred             chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-------------cCH--HHHHH
Q 030880           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-------------VSI--EEGEA  139 (170)
Q Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~--~~~~~  139 (170)
                      ....+.+||++++++|+++....-. .+.+..+..+.  .+|-++++||.|...+..             ++.  .+..+
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys--~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~  225 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS--KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQE  225 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh--cCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHH
Confidence            2334678999999999996432211 12233333333  588899999999764321             110  11111


Q ss_pred             HHh----------hcCC----eEEEEecCCCCChHHHhhcCCCC
Q 030880          140 KSR----------ELNV----MFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       140 ~~~----------~~~~----~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ...          ..|.    .+|.+|+++|+|++++.++|..+
T Consensus       226 ~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsq  269 (379)
T KOG1423|consen  226 KFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQ  269 (379)
T ss_pred             HhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhc
Confidence            111          1112    48999999999999999988643

>PRK12735 elongation factor Tu; Reviewed

Probab=99.80  E-value=9.2e-19  Score=128.78  Aligned_cols=156  Identities=16%  Similarity=0.105  Sum_probs=100.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|++...                ..+.....+.+  ............+.++||||++
T Consensus         9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCHH
Confidence            35678999999999999999999986210                00111222222  2223333445578999999998


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCcccc---CHHHHHHHHhhcC
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~~  145 (170)
                      +|.......+..+|++++|+|+.....- .....+..+.   ..++|.+ +++||+|+.+..+.   ...++..+.+.++
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~-qt~e~l~~~~---~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~  162 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMP-QTREHILLAR---QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCch-hHHHHHHHHH---HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence            8877667778899999999999864221 1223333222   2357755 57899999643221   1234555555543


Q ss_pred             -----CeEEEEecCCCC----------ChHHHhhcCC
Q 030880          146 -----VMFIETSAKAGF----------NIKVCLMLHP  167 (170)
Q Consensus       146 -----~~~~~~s~~~~~----------~i~~~~~~l~  167 (170)
                           ++++.+|+++|.          ++.++++.|.
T Consensus       163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~  199 (396)
T PRK12735        163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVD  199 (396)
T ss_pred             CCcCceeEEecchhccccCCCCCcccccHHHHHHHHH
Confidence                 689999999984          5666666553

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.80  E-value=1.7e-18  Score=119.03  Aligned_cols=130  Identities=16%  Similarity=0.180  Sum_probs=86.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--------Cc-----c---cceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD--------NT-----Y---QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~--------~~-----~---~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      +|+++|..|+|||||+++|+.....        ..     +   ....+.+.......+.....++.+|||||+.+|...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            6899999999999999999863211        00     0   011112222223333445578999999999999888


Q ss_pred             chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC
Q 030880           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV  146 (170)
Q Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (170)
                      +..+++.+|++++|+|+++.... ....++..+..   .++|+++++||+|+.....  .+...+....++.
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~---~~~P~iivvNK~D~~~a~~--~~~~~~i~~~~~~  146 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK---LNIPTIIFVNKIDRAGADL--EKVYQEIKEKLSS  146 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH---cCCCEEEEEECccccCCCH--HHHHHHHHHHHCC
Confidence            89999999999999999876432 23344444433   3689999999999865431  2333344444543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.80  E-value=1.6e-18  Score=130.60  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=110.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc------ccchhhh--
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYI--   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~--   79 (170)
                      +..+++++|+|++|||||.|+|++....-..-|..+.+......  ...+.++.++|.||.....      ...+.++  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~--~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKL--KYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEE--EecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            45679999999999999999999976654444554444444444  3444569999999944332      2334443  


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      .+.|++|-|.|++|-+.--.+.-.+.      .-+.|++++.|++|..+++.+. -+.+++.+.+|+++++++|++|+|+
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLl------E~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~  152 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLL------ELGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGL  152 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHH------HcCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCH
Confidence            36799999999997754333332222      2468999999999987665543 4577888999999999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++...+.+
T Consensus       153 ~~l~~~i~~  161 (653)
T COG0370         153 EELKRAIIE  161 (653)
T ss_pred             HHHHHHHHH
Confidence            999987753

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.80  E-value=1.4e-18  Score=127.94  Aligned_cols=146  Identities=16%  Similarity=0.119  Sum_probs=96.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC----------------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF----------------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|++...                ..+..+..+.+.  ...........+.+|||||++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~~~~~~liDtpGh~   86 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCCCEEEEEEECCchH
Confidence            45679999999999999999999974210                001112222332  333344456689999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCccccC---HHHHHHHHhhcC
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVS---IEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~~  145 (170)
                      +|..........+|++++|+|+...... ...+.+..+..   .++|.+ +++||+|+.+.....   .++++.+.+..+
T Consensus        87 ~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~  162 (394)
T TIGR00485        87 DYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence            8876666667789999999999864211 11222233322   246655 679999987543221   235666666665


Q ss_pred             -----CeEEEEecCCCC
Q 030880          146 -----VMFIETSAKAGF  157 (170)
Q Consensus       146 -----~~~~~~s~~~~~  157 (170)
                           ++++++|+++|.
T Consensus       163 ~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       163 FPGDDTPIIRGSALKAL  179 (394)
T ss_pred             CCccCccEEECcccccc
Confidence                 689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.80  E-value=2.8e-18  Score=126.00  Aligned_cols=153  Identities=20%  Similarity=0.247  Sum_probs=112.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.=|+++|+...|||||+..+........-.-..+.......+..+. ..-.+.|+|||||+.|..+..+-.+-+|+++
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI   83 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI   83 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence            344589999999999999999998776554333344344444444432 3457999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---------CeEEEEecCCCC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGF  157 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~  157 (170)
                      +|+++++.--    .+....+......++|++|++||+|..+.   +++....-..+.|         ..++++||++|+
T Consensus        84 LVVa~dDGv~----pQTiEAI~hak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~  156 (509)
T COG0532          84 LVVAADDGVM----PQTIEAINHAKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE  156 (509)
T ss_pred             EEEEccCCcc----hhHHHHHHHHHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence            9999997521    12233444444568999999999998633   3344444444443         479999999999


Q ss_pred             ChHHHhhcCC
Q 030880          158 NIKVCLMLHP  167 (170)
Q Consensus       158 ~i~~~~~~l~  167 (170)
                      |++++++.+.
T Consensus       157 Gi~eLL~~il  166 (509)
T COG0532         157 GIDELLELIL  166 (509)
T ss_pred             CHHHHHHHHH
Confidence            9999998763

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.79  E-value=4.2e-18  Score=117.71  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=111.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cchhhhcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~   83 (170)
                      .+-++|.|++|||||++.+...+..-...++++.....-.+..++ ...+++-|.||.-+=..       .....++.++
T Consensus       198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~  276 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIERCK  276 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHHhhc
Confidence            467899999999999999998665333334444444444443333 23499999999433222       2233467899


Q ss_pred             EEEEEEeCCCh---hhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCC
Q 030880           84 VAVVVYDVASR---QSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGF  157 (170)
Q Consensus        84 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~  157 (170)
                      .+++|+|++.+   +.++.++....++..+..  .+.|.++|+||+|+.+..   .....++++.+.- .++++||++++
T Consensus       277 ~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~e  353 (366)
T KOG1489|consen  277 GLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGE  353 (366)
T ss_pred             eEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecccc
Confidence            99999999988   778887777777766654  678999999999985322   2224666666654 49999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |+.++++.|.+.
T Consensus       354 gl~~ll~~lr~~  365 (366)
T KOG1489|consen  354 GLEELLNGLREL  365 (366)
T ss_pred             chHHHHHHHhhc
Confidence            999999887654

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=4.8e-18  Score=122.95  Aligned_cols=155  Identities=25%  Similarity=0.220  Sum_probs=106.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccc-cc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRS-LI   75 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~-~~   75 (170)
                      ..++|+++|.|++|||||+|++++.... ....+.++.+.....+..++  .++.++||+|..+          |.. -.
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~--~~~~liDTAGiRrk~ki~e~~E~~Sv~rt  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG--RKYVLIDTAGIRRKGKITESVEKYSVART  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC--eEEEEEECCCCCcccccccceEEEeehhh
Confidence            4699999999999999999999986542 23345555566665555555  5688999999443          221 12


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHh----hc-CCeEEE
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR----EL-NVMFIE  150 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~-~~~~~~  150 (170)
                      ...+..+|.+++|.|++.+-+-++  ..+..+..  ..+.+++|+.||+|+.++.....++.+....    .. .++.+.
T Consensus       255 ~~aI~~a~vvllviDa~~~~~~qD--~~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~  330 (444)
T COG1160         255 LKAIERADVVLLVIDATEGISEQD--LRIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF  330 (444)
T ss_pred             HhHHhhcCEEEEEEECCCCchHHH--HHHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence            344678999999999987644322  22222222  2468999999999997764444444333222    22 358999


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +||++|.|++++|+.+.+
T Consensus       331 iSA~~~~~i~~l~~~i~~  348 (444)
T COG1160         331 ISALTGQGLDKLFEAIKE  348 (444)
T ss_pred             EEecCCCChHHHHHHHHH
Confidence            999999999999987643

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.79  E-value=3.5e-18  Score=116.11  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=77.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC--C--------------cccceeeeEEEEEEEEEC--------CeEEEEEEEeCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLWDTA   66 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~   66 (170)
                      +|+++|..++|||||+.+|+.....  .              +.....+...........        +..+.+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999999864211  0              000111111111112222        347889999999


Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      |+++|......+++.+|++++|+|+....+.+.. ..+....   ..++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~---~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL---KERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCcc
Confidence            9999999999999999999999999877544332 2222222   2458999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.79  E-value=3.5e-18  Score=111.71  Aligned_cols=157  Identities=19%  Similarity=0.199  Sum_probs=101.9

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------cccccc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRS   73 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~   73 (170)
                      -++.....|+++|.+++|||||||+|++++.......+.+.+.....+.+.+   .+.++|.||          ++....
T Consensus        19 ~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGyAkv~k~~~e~w~~   95 (200)
T COG0218          19 YPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGYAKVPKEVKEKWKK   95 (200)
T ss_pred             CCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC---cEEEEeCCCcccccCCHHHHHHHHH
Confidence            3445667899999999999999999999774333344455555555555555   388999999          223334


Q ss_pred             cchhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH----hhcCC
Q 030880           74 LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNV  146 (170)
Q Consensus        74 ~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~  146 (170)
                      +...|++   +-.++++++|...+-.  ..+...-++...  .++|++|++||+|.....+.. ......+    .....
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~--~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~  170 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPK--DLDREMIEFLLE--LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPD  170 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCc--HHHHHHHHHHHH--cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCc
Confidence            4555554   4567788888775532  222222222222  469999999999997654433 1122222    22233


Q ss_pred             e--EEEEecCCCCChHHHhhcCCC
Q 030880          147 M--FIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       147 ~--~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .  ++..|+.++.|++++...|.+
T Consensus       171 ~~~~~~~ss~~k~Gi~~l~~~i~~  194 (200)
T COG0218         171 DQWVVLFSSLKKKGIDELKAKILE  194 (200)
T ss_pred             cceEEEEecccccCHHHHHHHHHH
Confidence            3  888999999999998877643

>cd04169 RF3 RF3 subfamily

Probab=99.78  E-value=1.3e-17  Score=116.50  Aligned_cols=116  Identities=23%  Similarity=0.264  Sum_probs=78.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-Cc----------------ccc---eeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NT----------------YQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~----------------~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      -+|+++|++|+|||||+++|+..... ..                +.+   ..+.+.......+...++++.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            57999999999999999999853110 00                000   01122223333445566899999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      +|.......++.+|++++|+|+++.... ....++....   ..++|+++++||+|+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR  138 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence            8887777789999999999999865321 1223333222   246899999999998554

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.78  E-value=4.9e-18  Score=115.43  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=94.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCccccccc-----chhhhcCCcE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSL-----IPSYIRDSSV   84 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~-----~~~~~~~~~~   84 (170)
                      ||+++|++++||||..+.+.++..+..... .+.+.......+ ......+.+||+||+..+...     ....++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~-L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLR-LEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS---GGGGGG------SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCCchhccc-cCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999999998765544321 221222222222 244568999999998866443     4666899999


Q ss_pred             EEEEEeCCChhhH---HhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc------CHHHHHHHHhhcC---CeEEEEe
Q 030880           85 AVVVYDVASRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELN---VMFIETS  152 (170)
Q Consensus        85 ~i~v~d~~~~~s~---~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~s  152 (170)
                      +|+|+|+...+-.   ..+...+..+.+.. ++..+-++.+|+|+..+...      ..+++...+...+   +.++.+|
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-p~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TS  158 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYS-PNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTS  158 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHS-TT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhC-CCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEecc
Confidence            9999999854433   33344444444443 78999999999998643211      1233444445555   7889888


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      ..+ ..+-+.|..+.+
T Consensus       159 I~D-~Sly~A~S~Ivq  173 (232)
T PF04670_consen  159 IWD-ESLYEAWSKIVQ  173 (232)
T ss_dssp             TTS-THHHHHHHHHHH
T ss_pred             CcC-cHHHHHHHHHHH
Confidence            886 577666665543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.78  E-value=3.3e-18  Score=127.15  Aligned_cols=152  Identities=17%  Similarity=0.204  Sum_probs=101.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-------------------------Cc--ccceeeeEEEEEEEEECCe
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-------------------------NT--YQATIGIDFLSKTMYLEDR   56 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~-------------------------~~--~~~~~~~~~~~~~~~~~~~   56 (170)
                      ..+.++++++|+.++|||||+.+|+....  .                         +.  .....+.+...........
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            45669999999999999999999985211  0                         00  0001112222222334455


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHH-------hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFL-------NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  128 (170)
                      ...++++|+||+++|.......+..+|++|+|+|+++. .|+       ...+.+..+.   ..++| +++++||+|+.+
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~---~~gi~~iIV~vNKmD~~~  159 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF---TLGVKQMICCCNKMDATT  159 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH---HcCCCcEEEEEEcccCCc
Confidence            67899999999999999889999999999999999863 222       2222222221   23564 688899999752


Q ss_pred             cc------ccCHHHHHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880          129 KR------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKV  161 (170)
Q Consensus       129 ~~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (170)
                      ..      ....+++..+.++.|     ++++++|+++|.|+.+
T Consensus       160 ~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        160 PKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            11      112456677777666     5799999999999853

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.78  E-value=4.2e-18  Score=119.58  Aligned_cols=151  Identities=17%  Similarity=0.171  Sum_probs=95.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccc----c-e-----------eeeEEEEEEEEECCeEEEEEEEeCCCccccccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQ----A-T-----------IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL   74 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~----~-~-----------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~   74 (170)
                      +|+++|.+|+|||||+++++.........    . +           .+..............+.+.+|||||+..+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            68999999999999999998532110000    0 0           011111111222234568999999999888777


Q ss_pred             chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe--EEEEe
Q 030880           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM--FIETS  152 (170)
Q Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~s  152 (170)
                      +..+++.+|++++|+|+++.........| ..+.   ..++|.++++||+|.....  .......+...++..  .+.+.
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~---~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip  154 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFAD---EAGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLP  154 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEec
Confidence            88889999999999999876544332222 2222   2468999999999986542  122333444445543  34555


Q ss_pred             cCCCCChHHHhhcCC
Q 030880          153 AKAGFNIKVCLMLHP  167 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~  167 (170)
                      ..++.++..+.+.+.
T Consensus       155 ~~~~~~~~~~vd~~~  169 (268)
T cd04170         155 IGEGDDFKGVVDLLT  169 (268)
T ss_pred             ccCCCceeEEEEccc
Confidence            677777766665553

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01850 CDC_Septin CDC/Septin

Probab=99.78  E-value=9.4e-18  Score=117.76  Aligned_cols=141  Identities=13%  Similarity=0.180  Sum_probs=91.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----   73 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----   73 (170)
                      .++|+++|.+|+|||||+|+|++......          ..++.........+..++..+++.+|||||......     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999998866433          233444455555555667778999999999443211     


Q ss_pred             ---------------------cchhhhc--CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           74 ---------------------LIPSYIR--DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        74 ---------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                                           .....+.  .+|+++++++.+.. .+... ...+..+.    ..+|+++|+||+|+...
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~----~~v~vi~VinK~D~l~~  158 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS----KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh----ccCCEEEEEECCCcCCH
Confidence                                 1112222  46777777776642 11111 22223332    25899999999998653


Q ss_pred             cc--cCHHHHHHHHhhcCCeEEEEecC
Q 030880          130 RQ--VSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus       130 ~~--~~~~~~~~~~~~~~~~~~~~s~~  154 (170)
                      .+  .......+.+...++.++.....
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            22  33556777778888888876654

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.78  E-value=4.4e-18  Score=127.43  Aligned_cols=153  Identities=21%  Similarity=0.229  Sum_probs=95.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc---------------------------------cceeeeEEEEEEE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY---------------------------------QATIGIDFLSKTM   51 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~   51 (170)
                      .....++|+++|..++|||||+++|+.....-..                                 ....+.+...  .
T Consensus        23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~--~  100 (474)
T PRK05124         23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAY--R  100 (474)
T ss_pred             cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeE--E
Confidence            3466799999999999999999999864221000                                 0011122222  2


Q ss_pred             EECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        52 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      ........+.++||||++.|.......++.+|++++|+|+...-.-. ....+..+ .... ..|+++++||+|+.+...
T Consensus       101 ~~~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~~~l~-~~lg-~~~iIvvvNKiD~~~~~~  177 (474)
T PRK05124        101 YFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRHSFIA-TLLG-IKHLVVAVNKMDLVDYSE  177 (474)
T ss_pred             EeccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHHHHHH-HHhC-CCceEEEEEeeccccchh
Confidence            22334567899999999888766666679999999999987542111 11111111 1111 247888999999864332


Q ss_pred             cCH----HHHHHHHhhc----CCeEEEEecCCCCChHHH
Q 030880          132 VSI----EEGEAKSREL----NVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       132 ~~~----~~~~~~~~~~----~~~~~~~s~~~~~~i~~~  162 (170)
                      ...    ++...+.+..    .++++++|+++|.|+++.
T Consensus       178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            111    2222333333    368999999999998764

>CHL00071 tufA elongation factor Tu

Probab=99.77  E-value=1.2e-17  Score=123.49  Aligned_cols=147  Identities=16%  Similarity=0.133  Sum_probs=96.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|.+++|||||+++|++....                .+..+..+.+.  ...........+.++||||+.
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~--~~~~~~~~~~~~~~iDtPGh~   86 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINT--AHVEYETENRHYAHVDCPGHA   86 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEc--cEEEEccCCeEEEEEECCChH
Confidence            456699999999999999999999974211                11112222222  222333445678899999998


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcC
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN  145 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~  145 (170)
                      .|.......+..+|++++|+|+...-. ......+..+..   .++| +++++||+|+.+..+.   ..+++..+.+..+
T Consensus        87 ~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~  162 (409)
T CHL00071         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD  162 (409)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            887777777889999999999885422 122222332222   3577 6788999999753321   1234555555543


Q ss_pred             -----CeEEEEecCCCCC
Q 030880          146 -----VMFIETSAKAGFN  158 (170)
Q Consensus       146 -----~~~~~~s~~~~~~  158 (170)
                           ++++.+|+.+|.+
T Consensus       163 ~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        163 FPGDDIPIVSGSALLALE  180 (409)
T ss_pred             CCCCcceEEEcchhhccc
Confidence                 6899999999874

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.77  E-value=1.4e-17  Score=115.88  Aligned_cols=153  Identities=20%  Similarity=0.190  Sum_probs=105.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc--ccccc-------chhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--RFRSL-------IPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--~~~~~-------~~~~   78 (170)
                      .-..+++.|.|++|||||++.+...+..-...|+++...+.-.+  ..+..+++++||||.=  -...+       ..+.
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhf--e~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHF--ERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeee--ecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            34679999999999999999999887655555555544444333  2344589999999921  11111       1111


Q ss_pred             hcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCC
Q 030880           79 IRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKA  155 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~  155 (170)
                      -.-.++++|++|.+..  .+.+....++.++.....  .|+++|.||+|..+.....  ++.......+ .....+++..
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~--~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK--APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC--CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeee
Confidence            2246789999999854  578888889999988874  8999999999987555443  3333333333 4577888888


Q ss_pred             CCChHHHhhcC
Q 030880          156 GFNIKVCLMLH  166 (170)
Q Consensus       156 ~~~i~~~~~~l  166 (170)
                      +.+++..-+.+
T Consensus       321 ~~~~d~~~~~v  331 (346)
T COG1084         321 GCGLDKLREEV  331 (346)
T ss_pred             hhhHHHHHHHH
Confidence            88888665443

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.76  E-value=1.2e-17  Score=112.15  Aligned_cols=152  Identities=13%  Similarity=0.140  Sum_probs=89.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeee---EEEEEEEEECCeEEEEEEEeCCCcccccccchhh-----hc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   80 (170)
                      ++||+++|.+|+|||||+|.+++...........+.   +........ .....+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            478999999999999999999986543322222221   100111111 112368999999975433322233     56


Q ss_pred             CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCccc-----------cCHHHHHHHHh----hc
Q 030880           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ-----------VSIEEGEAKSR----EL  144 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~~  144 (170)
                      ++|+++++.+.    ++... ..++..+...   +.|+++|+||+|+..+..           ...++..+.+.    ..
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  152 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEA  152 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHc
Confidence            78988887442    23333 3344444443   578999999999843211           01111222221    22


Q ss_pred             C---CeEEEEecC--CCCChHHHhhcCCC
Q 030880          145 N---VMFIETSAK--AGFNIKVCLMLHPN  168 (170)
Q Consensus       145 ~---~~~~~~s~~--~~~~i~~~~~~l~~  168 (170)
                      +   -++|.+|+.  .+.|+..+.+.+..
T Consensus       153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~  181 (197)
T cd04104         153 GVSEPPVFLVSNFDPSDYDFPKLRETLLK  181 (197)
T ss_pred             CCCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence            2   278999998  57888888887654

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.76  E-value=1.3e-17  Score=124.03  Aligned_cols=151  Identities=21%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--C-----------------------------CcccceeeeEEEEEEEEEC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--D-----------------------------NTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~   54 (170)
                      ..+.++|+++|+.++|||||+.+|+....  .                             .+.....+.+.  ......
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~--~~~~~~   81 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDI--ALWKFE   81 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEe--eeEEEc
Confidence            45669999999999999999999986211  0                             00111122222  223344


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hH---HhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF---LNTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  127 (170)
                      .....+.++|+||+.+|.......+..+|++++|+|++...   .+   ....+.+..+.   ..++| +|+++||+|..
T Consensus        82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~---~~gi~~iiv~vNKmD~~  158 (446)
T PTZ00141         82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF---TLGVKQMIVCINKMDDK  158 (446)
T ss_pred             cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH---HcCCCeEEEEEEccccc
Confidence            55678999999999999888888899999999999998642   11   12222222222   23566 67899999953


Q ss_pred             C--ccc----cCHHHHHHHHhhc-----CCeEEEEecCCCCChHH
Q 030880          128 E--KRQ----VSIEEGEAKSREL-----NVMFIETSAKAGFNIKV  161 (170)
Q Consensus       128 ~--~~~----~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~  161 (170)
                      .  ..+    ...+++..+....     +++++.+|+.+|.|+.+
T Consensus       159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            2  111    1123344444433     36799999999999864

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.76  E-value=6e-18  Score=110.49  Aligned_cols=118  Identities=18%  Similarity=0.360  Sum_probs=74.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh---hhcCCcEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS---YIRDSSVA   85 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~---~~~~~~~~   85 (170)
                      .-.|+++|+.|+|||+|..+|.++...+...+... .. .... .......+.++|+|||++.+.....   +..++.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~-~~~~-~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NI-AYNV-NNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EE-ECCG-SSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-Cc-eEEe-ecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            35689999999999999999999966554433311 11 1111 1233447899999999998765444   47899999


Q ss_pred             EEEEeCCC-hhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCc
Q 030880           86 VVVYDVAS-RQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        86 i~v~d~~~-~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~  129 (170)
                      |+|+|.+. +..+.++.+++..+....   ...+|++|++||.|+..+
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            99999874 445666555555543332   368999999999999754

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG2262 HflX GTPases [General function prediction only]

Probab=99.75  E-value=2.5e-17  Score=117.73  Aligned_cols=155  Identities=19%  Similarity=0.145  Sum_probs=111.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc--cc------chhhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR--SL------IPSYI   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~--~~------~~~~~   79 (170)
                      .-..|.++|-+++|||||+|.|++........-+.+.+...+.+...+ +..+.+-||.|.-+.-  .+      .....
T Consensus       191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            446899999999999999999997655444444555566666666665 4578999999943211  11      12224


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      ..+|.++.|+|+++|...+.+..-...+........|+|+|.||+|+.....    .........+ ..+.+||++|.|+
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~----~~~~~~~~~~-~~v~iSA~~~~gl  344 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE----ILAELERGSP-NPVFISAKTGEGL  344 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh----hhhhhhhcCC-CeEEEEeccCcCH
Confidence            5899999999999997777777777777666556799999999999764432    1111111112 5789999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +.+.+.|.+
T Consensus       345 ~~L~~~i~~  353 (411)
T COG2262         345 DLLRERIIE  353 (411)
T ss_pred             HHHHHHHHH
Confidence            999887654

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=3.2e-17  Score=120.50  Aligned_cols=160  Identities=18%  Similarity=0.157  Sum_probs=114.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCcccceeeeEEEEEEE-EECCeEEEEEEEeCCCccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~   70 (170)
                      .+--|+.++..-..|||||..+|+....               .-+.....+.......+ ..++..+.++++|||||..
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3456899999999999999999985211               11112222322222222 2246779999999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCCeEE
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFI  149 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~  149 (170)
                      |.....+.+.-|+++++++|++..-.-+....++..+.    .+..+|.|+||+|+..++.- -..+..+.....+.+.+
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i  213 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI  213 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceE
Confidence            99999999999999999999997654444555544443    46788999999999765321 12333344444456899


Q ss_pred             EEecCCCCChHHHhhcCCCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      .+||++|.|+.++++.+++.|
T Consensus       214 ~vSAK~G~~v~~lL~AII~rV  234 (650)
T KOG0462|consen  214 YVSAKTGLNVEELLEAIIRRV  234 (650)
T ss_pred             EEEeccCccHHHHHHHHHhhC
Confidence            999999999999999998764

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.75  E-value=6.7e-17  Score=117.21  Aligned_cols=163  Identities=17%  Similarity=0.146  Sum_probs=117.0

Q ss_pred             CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCC---------------CCcccceeeeEEEEEEEEE---CCeEEEEEEE
Q 030880            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF---------------DNTYQATIGIDFLSKTMYL---EDRTVRLQLW   63 (170)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~   63 (170)
                      ..++...--|++++..-..|||||..+++....               .-+.....+.......+.+   ++..+.++++
T Consensus         2 ~~~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlI   81 (603)
T COG0481           2 TFTPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLI   81 (603)
T ss_pred             CccchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEc
Confidence            344445556899999999999999999986211               1112223333333333322   5688999999


Q ss_pred             eCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh
Q 030880           64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus        64 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  143 (170)
                      |||||-.|.-...+.+..|.+.++++|+++.-.-+.+...+..+.    .+.-++-|+||+|++.+..  ..-..+...-
T Consensus        82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle----~~LeIiPViNKIDLP~Adp--ervk~eIe~~  155 (603)
T COG0481          82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE----NNLEIIPVLNKIDLPAADP--ERVKQEIEDI  155 (603)
T ss_pred             CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH----cCcEEEEeeecccCCCCCH--HHHHHHHHHH
Confidence            999999999888999999999999999997754455555555553    4677889999999965531  2223334444


Q ss_pred             cCC---eEEEEecCCCCChHHHhhcCCCCC
Q 030880          144 LNV---MFIETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       144 ~~~---~~~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      .|+   ..+.+||++|.||+++++.|.+.|
T Consensus       156 iGid~~dav~~SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         156 IGIDASDAVLVSAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             hCCCcchheeEecccCCCHHHHHHHHHhhC
Confidence            565   679999999999999999987654

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.74  E-value=2.9e-17  Score=121.25  Aligned_cols=147  Identities=23%  Similarity=0.234  Sum_probs=92.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCc---------------------------------ccceeeeEEEEEEEEECCe
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT---------------------------------YQATIGIDFLSKTMYLEDR   56 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~   56 (170)
                      +||+++|+.++|||||+++|+.....-.                                 .....+.+...  ......
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~--~~~~~~   78 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAY--RYFSTD   78 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeee--EEEccC
Confidence            5899999999999999999975321100                                 00111122222  222234


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC---
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---  133 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---  133 (170)
                      ..++.++||||+++|.......+..+|++++|+|+.....-+ ..+.+..+. .. ...++++++||+|+.+.....   
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~-~~-~~~~iivviNK~D~~~~~~~~~~~  155 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIAS-LL-GIRHVVLAVNKMDLVDYDEEVFEN  155 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHH-Hc-CCCcEEEEEEecccccchHHHHHH
Confidence            458899999999988776667789999999999987552211 111122222 21 124588899999986432211   


Q ss_pred             -HHHHHHHHhhcC---CeEEEEecCCCCChHH
Q 030880          134 -IEEGEAKSRELN---VMFIETSAKAGFNIKV  161 (170)
Q Consensus       134 -~~~~~~~~~~~~---~~~~~~s~~~~~~i~~  161 (170)
                       .++...+.+..+   ++++++|+++|.|+++
T Consensus       156 i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       156 IKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence             122333334443   4799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK00049 elongation factor Tu; Reviewed

Probab=99.74  E-value=8.3e-17  Score=118.45  Aligned_cols=156  Identities=16%  Similarity=0.105  Sum_probs=100.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC----------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD----------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|++....                .+..+..+.+.  ....+......+.++||||+.
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~--~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINT--AHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEee--eEEEEcCCCeEEEEEECCCHH
Confidence            356789999999999999999999873110                01122222232  233333445678999999998


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCcccc---CHHHHHHHHhhc-
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQV---SIEEGEAKSREL-  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~-  144 (170)
                      +|.......+..+|++++|+|+..... ......+..+..   .++|.+ +++||+|+.+....   ...+...+.... 
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~  162 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD  162 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence            887767777889999999999986422 122233333322   357865 57899998643221   122344444443 


Q ss_pred             ----CCeEEEEecCCCC----------ChHHHhhcCC
Q 030880          145 ----NVMFIETSAKAGF----------NIKVCLMLHP  167 (170)
Q Consensus       145 ----~~~~~~~s~~~~~----------~i~~~~~~l~  167 (170)
                          +++++.+|++++.          |+.++++.|.
T Consensus       163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~  199 (396)
T PRK00049        163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVD  199 (396)
T ss_pred             CCccCCcEEEeecccccCCCCcccccccHHHHHHHHH
Confidence                3689999999875          4566666554

>PLN03126 Elongation factor Tu; Provisional

Probab=99.74  E-value=8.2e-17  Score=120.32  Aligned_cols=149  Identities=17%  Similarity=0.133  Sum_probs=96.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC------CC--------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------DN--------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      ..+.++++++|..++|||||+++|++...      ..        ......+.+..............+.++|+||+++|
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            34568999999999999999999996211      00        00111222222222223334558899999999998


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhc---
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSREL---  144 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~---  144 (170)
                      .......+..+|++++|+|+.....- ...+++..+..   .++| +++++||+|+.+....   ..+++..+.+..   
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~---~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQ---VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            87777778899999999998865321 22333333322   3577 7788999998653221   123455555543   


Q ss_pred             --CCeEEEEecCCCCC
Q 030880          145 --NVMFIETSAKAGFN  158 (170)
Q Consensus       145 --~~~~~~~s~~~~~~  158 (170)
                        +++++.+|+.+|.+
T Consensus       234 ~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        234 GDDIPIISGSALLALE  249 (478)
T ss_pred             cCcceEEEEEcccccc
Confidence              46899999998853

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=8.3e-17  Score=115.07  Aligned_cols=154  Identities=23%  Similarity=0.283  Sum_probs=102.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYL   53 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~   53 (170)
                      ...+.++++++|+..+|||||+.+|++..-                               ..+..  .+.+........
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERe--rGvTi~~~~~~f   80 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERE--RGVTIDVAHSKF   80 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHh--cceEEEEEEEEe
Confidence            456679999999999999999999987311                               00111  122222222333


Q ss_pred             CCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           54 EDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ..+.+.++|+|+||++.|-..+.....+||+.|+|+|+.+.+   +|..  ..+....+.+..+ -..+||++||+|..+
T Consensus        81 et~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG-i~~lIVavNKMD~v~  159 (428)
T COG5256          81 ETDKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG-IKQLIVAVNKMDLVS  159 (428)
T ss_pred             ecCCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC-CceEEEEEEcccccc
Confidence            445568999999999999888888899999999999998763   3322  2222222222222 344788889999986


Q ss_pred             ccccCHHH----HHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880          129 KRQVSIEE----GEAKSRELN-----VMFIETSAKAGFNIKV  161 (170)
Q Consensus       129 ~~~~~~~~----~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (170)
                      .++--.++    ...+.+..|     ++|+++|+..|.|+.+
T Consensus       160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            54333333    333444444     4799999999999865

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=1.3e-16  Score=117.33  Aligned_cols=151  Identities=17%  Similarity=0.174  Sum_probs=111.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .+.=|-++|.-..|||||+..|..........-..+.......+..+ .+-.++|.|||||..|..|..+-..-+|++++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL  230 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL  230 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence            34568899999999999999999876654433333333333444445 34689999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---------CeEEEEecCCCCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGFN  158 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~~  158 (170)
                      |+.+.|.-    ..+.++.+......++|++|.+||+|.++.   +.+...+-....|         ++.+++|+++|.|
T Consensus       231 VVAadDGV----mpQT~EaIkhAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  231 VVAADDGV----MPQTLEAIKHAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEccCCc----cHhHHHHHHHHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            99998752    122334444455578999999999997543   3444444444443         5789999999999


Q ss_pred             hHHHhhcC
Q 030880          159 IKVCLMLH  166 (170)
Q Consensus       159 i~~~~~~l  166 (170)
                      ++.+-+.+
T Consensus       304 l~~L~eai  311 (683)
T KOG1145|consen  304 LDLLEEAI  311 (683)
T ss_pred             hHHHHHHH
Confidence            99987764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.73  E-value=5.9e-17  Score=125.63  Aligned_cols=152  Identities=23%  Similarity=0.248  Sum_probs=94.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------------c--c----------------ceeeeEEEEEEE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------------Y--Q----------------ATIGIDFLSKTM   51 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------------~--~----------------~~~~~~~~~~~~   51 (170)
                      +....++|+++|.+++|||||+++|+.....-.               .  .                ...+.+..  ..
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~--~~   97 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVA--YR   97 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceee--ee
Confidence            344568999999999999999999996432100               0  0                00111111  11


Q ss_pred             EECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           52 YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        52 ~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      .......++.++||||++.|.......+..+|++++|+|+.....-+ ....+..+...  ...+++|++||+|+.+...
T Consensus        98 ~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~~~~~~--~~~~iivvvNK~D~~~~~~  174 (632)
T PRK05506         98 YFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSFIASLL--GIRHVVLAVNKMDLVDYDQ  174 (632)
T ss_pred             EEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHHHHHHh--CCCeEEEEEEecccccchh
Confidence            22234457889999999888666666788999999999987542211 11122222221  1257888999999864221


Q ss_pred             cC----HHHHHHHHhhcC---CeEEEEecCCCCChHH
Q 030880          132 VS----IEEGEAKSRELN---VMFIETSAKAGFNIKV  161 (170)
Q Consensus       132 ~~----~~~~~~~~~~~~---~~~~~~s~~~~~~i~~  161 (170)
                      ..    ..+...+.+..+   ++++++|+++|.|+++
T Consensus       175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            11    122333444444   4699999999999874

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=1e-16  Score=112.13  Aligned_cols=113  Identities=20%  Similarity=0.215  Sum_probs=76.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC------------------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD------------------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      +|+++|.+++|||||+++|+.....                  .+.....+.+.....+.  ..+.++.++||||+..+.
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~--~~~~~i~liDTPG~~df~   78 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF--WKDHRINIIDTPGHVDFT   78 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE--ECCEEEEEEECCCcHHHH
Confidence            6899999999999999999752110                  00111122222222222  235789999999999888


Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      ..+..+++.+|++++|+|+.+.-.-. ....+..+..   .++|+++++||+|+.+.
T Consensus        79 ~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~a  131 (270)
T cd01886          79 IEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCCC
Confidence            88889999999999999998653211 1222233322   45899999999998643

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.72  E-value=4.2e-16  Score=108.32  Aligned_cols=151  Identities=20%  Similarity=0.185  Sum_probs=105.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYI   79 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~   79 (170)
                      ...-+++++|.|++|||||+++|++........++++.+...-.+...+  ..+++.|+||.-+-       ........
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~  138 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA  138 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence            3457899999999999999999999876555556666566565555444  78999999983221       12345567


Q ss_pred             cCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcC----------------------------------------------
Q 030880           80 RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERG----------------------------------------------  112 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~----------------------------------------------  112 (170)
                      ++||.+++|.|+..+.+ .+.+.+.+........                                              
T Consensus       139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V  218 (365)
T COG1163         139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV  218 (365)
T ss_pred             ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence            89999999999986544 3333333222211100                                              


Q ss_pred             -------------------CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880          113 -------------------SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus       113 -------------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                                         ..+|.+.|.||+|+..     .++...+.+..  .++.+|+..+.|++++.+.|
T Consensus       219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i  284 (365)
T COG1163         219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERI  284 (365)
T ss_pred             EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHH
Confidence                               1578999999999854     24444444444  78899999999999998765

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.72  E-value=2.5e-16  Score=112.17  Aligned_cols=81  Identities=21%  Similarity=0.275  Sum_probs=53.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEE---------------------ECC-eEEEEEEEeCCCc-
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LED-RTVRLQLWDTAGQ-   68 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~i~D~~g~-   68 (170)
                      |.++|.+++|||||++++++........|+++.+.......                     .++ ..+.+.+||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            57899999999999999998765322223322222111111                     112 3467999999997 


Q ss_pred             ---ccccccchh---hhcCCcEEEEEEeCC
Q 030880           69 ---ERFRSLIPS---YIRDSSVAVVVYDVA   92 (170)
Q Consensus        69 ---~~~~~~~~~---~~~~~~~~i~v~d~~   92 (170)
                         ++...+...   .++++|++++|+|++
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~  110 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDAS  110 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence               334444334   489999999999997

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.71  E-value=2.8e-16  Score=116.84  Aligned_cols=156  Identities=17%  Similarity=0.092  Sum_probs=95.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC------CC----------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYD------KF----------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..+.++|+++|..++|||||+++|.+.      ..          ..+..+..+.+.  ....+......+.++||||++
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~--~~~~~~~~~~~i~~iDtPGh~  135 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIAT--AHVEYETAKRHYAHVDCPGHA  135 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeee--eEEEEcCCCeEEEEEECCCcc
Confidence            346789999999999999999999731      10          011112233333  223344445678999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccC---HHHHHHHHhhc-
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVS---IEEGEAKSREL-  144 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-  144 (170)
                      .|.......+..+|++++|+|+.....- .....+..+..   .++| +++++||+|+.+.....   ..+...+.... 
T Consensus       136 ~f~~~~~~g~~~aD~allVVda~~g~~~-qt~e~l~~~~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~  211 (447)
T PLN03127        136 DYVKNMITGAAQMDGGILVVSAPDGPMP-QTKEHILLARQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYK  211 (447)
T ss_pred             chHHHHHHHHhhCCEEEEEEECCCCCch-hHHHHHHHHHH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhC
Confidence            8876666667789999999998764221 12222222222   3578 46789999997532211   11233333322 


Q ss_pred             ----CCeEEEEecC---CCCC-------hHHHhhcCC
Q 030880          145 ----NVMFIETSAK---AGFN-------IKVCLMLHP  167 (170)
Q Consensus       145 ----~~~~~~~s~~---~~~~-------i~~~~~~l~  167 (170)
                          .++++.+|+.   +|.|       +.++++.|.
T Consensus       212 ~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~  248 (447)
T PLN03127        212 FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVD  248 (447)
T ss_pred             CCCCcceEEEeccceeecCCCcccccchHHHHHHHHH
Confidence                3578888876   4544       566666553

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.1e-16  Score=104.92  Aligned_cols=155  Identities=21%  Similarity=0.281  Sum_probs=102.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc---CCcEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR---DSSVA   85 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~---~~~~~   85 (170)
                      +-.|+++|+.+||||+|.-+|..+...+...+..+   .........  -.++++|.|||++.+.-...+++   ++-++
T Consensus        38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep---n~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~akai  112 (238)
T KOG0090|consen   38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP---NEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAKAI  112 (238)
T ss_pred             CCcEEEEecCCCCceeeeeehhcCCccCeeeeecc---ceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccceeE
Confidence            35799999999999999999999865544322221   111121122  23899999999998887777777   79999


Q ss_pred             EEEEeCC-ChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccc--c----CHHHHH-----------------
Q 030880           86 VVVYDVA-SRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQ--V----SIEEGE-----------------  138 (170)
Q Consensus        86 i~v~d~~-~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~--~----~~~~~~-----------------  138 (170)
                      |||+|.. .+.-..++..++-.+....   ..++|+++++||.|+.-+..  .    ...|+.                 
T Consensus       113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~  192 (238)
T KOG0090|consen  113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI  192 (238)
T ss_pred             EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence            9999965 3334445555554443333   47789999999999863311  0    011111                 


Q ss_pred             -------------HHH--hhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          139 -------------AKS--RELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       139 -------------~~~--~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                                   .|.  ....+.|.++|++++ +++++-+|+.+.
T Consensus       193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                         011  112357899999988 999999998764

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.71  E-value=8.5e-17  Score=112.47  Aligned_cols=156  Identities=15%  Similarity=0.037  Sum_probs=102.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcCCcE
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSSV   84 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~~   84 (170)
                      |-++|.|++|||||++.+.+.+.--...|+++....--.+.. ...-.+.+-|.||.-+=       .......++++.+
T Consensus       162 VGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~-~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v  240 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV-DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV  240 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe-cCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence            567999999999999999986543222333333333333333 34447999999993221       1122344678999


Q ss_pred             EEEEEeCCChh---hHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEE-EecCCCCC
Q 030880           85 AVVVYDVASRQ---SFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE-TSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~~~  158 (170)
                      ++.|+|++..+   ..++......++..+..  .++|.+||+||+|+....+........+.+..+..... +|+.+++|
T Consensus       241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g  320 (369)
T COG0536         241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG  320 (369)
T ss_pred             eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence            99999998543   35555566666655543  68999999999996554433344455555555553222 99999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++...+.+
T Consensus       321 ~~~L~~~~~~  330 (369)
T COG0536         321 LDELLRALAE  330 (369)
T ss_pred             HHHHHHHHHH
Confidence            9998876643

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.71  E-value=1.6e-16  Score=118.15  Aligned_cols=161  Identities=19%  Similarity=0.148  Sum_probs=101.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC---CCccccee----eeEEEEE--------EE---EEC------------C
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF---DNTYQATI----GIDFLSK--------TM---YLE------------D   55 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~----~~~~~~~--------~~---~~~------------~   55 (170)
                      ....++|.++|.-..|||||+..|++...   ..+.....    ++.....        ..   ..+            +
T Consensus        31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            35678999999999999999999996422   11111111    1110000        00   000            0


Q ss_pred             ----eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           56 ----RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        56 ----~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                          ....+.++|+||++.|.......+..+|++++|+|+..+.......+.+..+. .. .-.+++++.||+|+.+...
T Consensus       111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~l-gi~~iIVvlNKiDlv~~~~  188 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IM-KLKHIIILQNKIDLVKEAQ  188 (460)
T ss_pred             ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-Hc-CCCcEEEEEecccccCHHH
Confidence                02368999999999988777777889999999999986411112223332222 21 1246888999999865322


Q ss_pred             c--CHHHHHHHHhh---cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          132 V--SIEEGEAKSRE---LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       132 ~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .  ..+++..+...   .+++++.+|+++|.|++++++.|.+
T Consensus       189 ~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~  230 (460)
T PTZ00327        189 AQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICT  230 (460)
T ss_pred             HHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence            1  12333333322   3579999999999999999988763

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.70  E-value=1.1e-15  Score=94.37  Aligned_cols=106  Identities=20%  Similarity=0.268  Sum_probs=67.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccchhhhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYIR   80 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~   80 (170)
                      +|+++|.+|+|||||+|+|++.... ....+..+...........+.  .+.++||||...-.         ......+.
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~   78 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS   78 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence            6899999999999999999985331 111222222333333344443  45799999954311         11233347


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (170)
                      .+|++++|+|.+++.. +.....+..+.    .+.|+++|+||
T Consensus        79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK  116 (116)
T PF01926_consen   79 KSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK  116 (116)
T ss_dssp             TESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred             HCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence            9999999999877322 22333333342    57999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.68  E-value=8.2e-16  Score=116.34  Aligned_cols=119  Identities=22%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--CC----------c-c-------cceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DN----------T-Y-------QATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~----------~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      ....+|+++|+.++|||||+++|+....  ..          . .       ....+.+.......+....+++++||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3456999999999999999999974111  00          0 0       0011122222223334456789999999


Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      |+..|......+++.+|++++|+|+++.-.. ....++....   ..++|+++++||+|+...
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~a  146 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDGR  146 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCccccc
Confidence            9999888778889999999999999865221 1233333322   246999999999998654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.68  E-value=8.5e-16  Score=103.22  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=93.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccc--ceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cc----h
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ--ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI----P   76 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~----~   76 (170)
                      ++|+++|.+|+|||||+|.+++........  +..+..+.......  .+..+.++||||......       ..    .
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~--~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW--DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE--CCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence            479999999999999999999876543221  12222333333333  335799999999554321       11    1


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCcccc------CHHHHHHHHhhcCCeE
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQV------SIEEGEAKSRELNVMF  148 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~~  148 (170)
                      ....+.|++++|.++.+ -+- .....+..+...++  .-.+++++.|+.|......+      .....+...+..+-.+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~  156 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY  156 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence            12357899999999876 222 22233444444433  12567888899987543211      1244556666666666


Q ss_pred             EEEec-----CCCCChHHHhhcCC
Q 030880          149 IETSA-----KAGFNIKVCLMLHP  167 (170)
Q Consensus       149 ~~~s~-----~~~~~i~~~~~~l~  167 (170)
                      +..+.     ..+.++.++++.+.
T Consensus       157 ~~f~~~~~~~~~~~q~~~Ll~~i~  180 (196)
T cd01852         157 VAFNNKAKGEEQEQQVKELLAKVE  180 (196)
T ss_pred             EEEeCCCCcchhHHHHHHHHHHHH
Confidence            55554     45678888887664

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.68  E-value=3e-15  Score=117.21  Aligned_cols=145  Identities=16%  Similarity=0.134  Sum_probs=91.8

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC----c--------------ccceeeeEEEEEEEEECCeEEEEEEEeC
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN----T--------------YQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~----~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (170)
                      .....-.||+++|.+++|||||+++|++.....    .              .....+.+.....+..  .+.++.+|||
T Consensus         5 ~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDT   82 (689)
T TIGR00484         5 TDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDT   82 (689)
T ss_pred             CccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEEC
Confidence            334445699999999999999999997521110    0              0112222222233333  3468999999


Q ss_pred             CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC
Q 030880           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN  145 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (170)
                      ||+.++...+...++.+|++++|+|+.+....+.. ..+..+..   .++|+++++||+|+.....  ......+...++
T Consensus        83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~~~~--~~~~~~i~~~l~  156 (689)
T TIGR00484        83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTGANF--LRVVNQIKQRLG  156 (689)
T ss_pred             CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCCCCH--HHHHHHHHHHhC
Confidence            99998888888889999999999999876443322 22233322   3589999999999875431  122233333333


Q ss_pred             C----eEEEEecCCC
Q 030880          146 V----MFIETSAKAG  156 (170)
Q Consensus       146 ~----~~~~~s~~~~  156 (170)
                      .    ..+.+|+..+
T Consensus       157 ~~~~~~~ipis~~~~  171 (689)
T TIGR00484       157 ANAVPIQLPIGAEDN  171 (689)
T ss_pred             CCceeEEeccccCCC
Confidence            2    3566666555

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.67  E-value=1.8e-15  Score=114.58  Aligned_cols=118  Identities=22%  Similarity=0.233  Sum_probs=79.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC-CCCc-------------------ccceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNT-------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      ....+|+++|.+++|||||+++|+... ....                   .....+.+...........++.+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            345799999999999999999986421 1000                   00111223333334445556899999999


Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      |+..|......+++.+|++|+|+|+++.-. .....++.....   .++|+++++||+|+..
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~~  146 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECccccC
Confidence            998888777778999999999999986411 112333333222   4689999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK13351 elongation factor G; Reviewed

Probab=99.66  E-value=8.2e-16  Score=120.44  Aligned_cols=120  Identities=21%  Similarity=0.272  Sum_probs=82.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC--------C-----cccc---eeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD--------N-----TYQA---TIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~--------~-----~~~~---~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      .....||+++|..++|||||+++|+.....        .     .+.+   ..+.+..............+.+|||||+.
T Consensus         5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~   84 (687)
T PRK13351          5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI   84 (687)
T ss_pred             cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence            345679999999999999999999853210        0     0000   01111111111222345789999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      ++...+..+++.+|++++|+|+++.........| ..+..   .++|+++++||+|+...
T Consensus        85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~~  140 (687)
T PRK13351         85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVGA  140 (687)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCCC
Confidence            9988889999999999999999887655544333 33322   46899999999998654

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.66  E-value=4e-16  Score=106.34  Aligned_cols=160  Identities=16%  Similarity=0.236  Sum_probs=101.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccchhh
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSY   78 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~   78 (170)
                      ...+++++++|.+|+|||||+|+|+++...+...-..+.+.........+ .-.+.+||+||-++       |+.....+
T Consensus        36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            45789999999999999999999997655433211112222222221122 24799999999554       66677888


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc-------ccCHHHHHHHH--------hh
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR-------QVSIEEGEAKS--------RE  143 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~--------~~  143 (170)
                      +...|.++++.++.++.=--.. .+++.+.... .+.++++++|.+|...+.       ......++++.        +.
T Consensus       115 l~~~DLvL~l~~~~draL~~d~-~f~~dVi~~~-~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~  192 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDE-DFLRDVIILG-LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL  192 (296)
T ss_pred             hhhccEEEEeccCCCccccCCH-HHHHHHHHhc-cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence            8999999999999877321122 2333333222 458999999999986431       11111111111        11


Q ss_pred             cC--CeEEEEecCCCCChHHHhhcCCC
Q 030880          144 LN--VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       144 ~~--~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..  -+++.++...+-|++++...+++
T Consensus       193 ~q~V~pV~~~~~r~~wgl~~l~~ali~  219 (296)
T COG3596         193 FQEVKPVVAVSGRLPWGLKELVRALIT  219 (296)
T ss_pred             HhhcCCeEEeccccCccHHHHHHHHHH
Confidence            11  27788888999999998887754

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=4.5e-16  Score=113.31  Aligned_cols=159  Identities=19%  Similarity=0.194  Sum_probs=102.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-c--------cchh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-S--------LIPS   77 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~--------~~~~   77 (170)
                      ..++|+++|+|++|||||+|.|...... -...+.++.|.....++++|  +++.+.||+|..+-. .        ....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k  344 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK  344 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence            4589999999999999999999987553 23456666677666666555  789999999977611 1        1233


Q ss_pred             hhcCCcEEEEEEeCCC--hhhHHhHHHHHHHHHHh------cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC---C
Q 030880           78 YIRDSSVAVVVYDVAS--RQSFLNTSKWIDEVRTE------RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN---V  146 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---~  146 (170)
                      .++.+|++++|+|+..  -++-..+.+.+.....-      .+.+.|++++.||.|+...-.-.......+....+   .
T Consensus       345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~  424 (531)
T KOG1191|consen  345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF  424 (531)
T ss_pred             HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence            4678999999999943  23322333333333221      12457899999999996551111111111111111   2


Q ss_pred             -eEEEEecCCCCChHHHhhcCCC
Q 030880          147 -MFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       147 -~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                       ...++|+++++|++++.+.|.+
T Consensus       425 ~i~~~vs~~tkeg~~~L~~all~  447 (531)
T KOG1191|consen  425 PIVVEVSCTTKEGCERLSTALLN  447 (531)
T ss_pred             ceEEEeeechhhhHHHHHHHHHH
Confidence             4566999999999998876643

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.64  E-value=1.8e-15  Score=104.65  Aligned_cols=97  Identities=18%  Similarity=0.207  Sum_probs=80.1

Q ss_pred             ccccccchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe
Q 030880           69 ERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (170)
Q Consensus        69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      +++..+.+.+++++|.+++|||+++++ ++..+.+|+..+..   .++|+++|+||+|+.+...+..+.+..+. ..++.
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~   99 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQ   99 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCe
Confidence            667788888999999999999999887 89999999876643   46999999999999765544444454444 57899


Q ss_pred             EEEEecCCCCChHHHhhcCCCC
Q 030880          148 FIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ++++|+++|.|++++|+.+.+.
T Consensus       100 v~~~SAktg~gi~eLf~~l~~~  121 (245)
T TIGR00157       100 VLMTSSKNQDGLKELIEALQNR  121 (245)
T ss_pred             EEEEecCCchhHHHHHhhhcCC
Confidence            9999999999999999998753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.64  E-value=4e-15  Score=103.62  Aligned_cols=158  Identities=18%  Similarity=0.263  Sum_probs=110.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEE--EECCeEEEEEEEeCCCcccccccchhhhcC----
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM--YLEDRTVRLQLWDTAGQERFRSLIPSYIRD----   81 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~----   81 (170)
                      ..-+|+++|+.|+|||||+.+|.+..   .+.+..+..+....+  ..++...++.+|-..|.--+..+....+..    
T Consensus        51 sgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~a  127 (473)
T KOG3905|consen   51 SGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLA  127 (473)
T ss_pred             CCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCcc
Confidence            44689999999999999999998865   223334444433332  234445678888877755444444333332    


Q ss_pred             CcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCC-----------------------------------------------
Q 030880           82 SSVAVVVYDVASRQS-FLNTSKWIDEVRTERGS-----------------------------------------------  113 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~-----------------------------------------------  113 (170)
                      -..+|++.|+++|.+ ++.++.|...+..+...                                               
T Consensus       128 etlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~  207 (473)
T KOG3905|consen  128 ETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEH  207 (473)
T ss_pred             ceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccc
Confidence            246788999999954 44477787666544321                                               


Q ss_pred             --------------CCeEEEEEeCCCCCC----c-------cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          114 --------------DVIIVLVGNKTDLVE----K-------RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       114 --------------~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                                    ++|++||++|+|...    +       .......++.||.++|...+.+|++...|++-+..+|..
T Consensus       208 ~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivh  287 (473)
T KOG3905|consen  208 VLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVH  287 (473)
T ss_pred             cccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHH
Confidence                          679999999999831    1       122345678999999999999999999999999888753

>PRK12739 elongation factor G; Reviewed

Probab=99.64  E-value=6e-15  Score=115.49  Aligned_cols=116  Identities=20%  Similarity=0.217  Sum_probs=79.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--------CC----------cccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--------DN----------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~--------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ....+|+++|..++|||||+++|+....        ..          +..+..+.+.....+..  .+.++.++||||+
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~   83 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGH   83 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCH
Confidence            3457899999999999999999975211        00          01122222333333333  3468999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ..+...+...++.+|++++|+|+......... ..+..+.   ..++|.++++||+|+..
T Consensus        84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~---~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQAD---KYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHH---HcCCCEEEEEECCCCCC
Confidence            88888888889999999999999865332221 2222222   24589999999999864

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.63  E-value=2e-14  Score=105.43  Aligned_cols=83  Identities=20%  Similarity=0.313  Sum_probs=55.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEE---------------------EC-CeEEEEEEEeCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY---------------------LE-DRTVRLQLWDTAG   67 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~i~D~~g   67 (170)
                      ++|.++|.|++|||||+|+|++........++.+.+.......                     .+ .....+++||+||
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG   81 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG   81 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence            6899999999999999999998766432233333222221111                     11 1236789999999


Q ss_pred             c----ccccccchhh---hcCCcEEEEEEeCC
Q 030880           68 Q----ERFRSLIPSY---IRDSSVAVVVYDVA   92 (170)
Q Consensus        68 ~----~~~~~~~~~~---~~~~~~~i~v~d~~   92 (170)
                      .    .+...+...+   ++++|++++|+|+.
T Consensus        82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            4    2233333344   88999999999996

>PRK09866 hypothetical protein; Provisional

Probab=99.63  E-value=1.7e-14  Score=109.23  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=72.0

Q ss_pred             EEEEEEeCCCcccc-----cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           58 VRLQLWDTAGQERF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        58 ~~~~i~D~~g~~~~-----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      ..+.++||||....     .......+..+|++++|+|..+..+..+. ..+..+.. .....|+++|+||+|..+....
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk-~~K~~PVILVVNKIDl~dreed  307 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILA-VGQSVPLYVLVNKFDQQDRNSD  307 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHh-cCCCCCEEEEEEcccCCCcccc
Confidence            35789999996542     22344568999999999999875333321 12233332 2223599999999998643332


Q ss_pred             CHHHHHHHHhh----c---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          133 SIEEGEAKSRE----L---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       133 ~~~~~~~~~~~----~---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..+....+...    .   ...++++||++|.|++++++.|.+
T Consensus       308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            34445444321    1   237999999999999999988754

>PRK00007 elongation factor G; Reviewed

Probab=99.62  E-value=6e-15  Score=115.46  Aligned_cols=143  Identities=17%  Similarity=0.152  Sum_probs=89.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--CC----------------cccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ...-.||+++|.+++|||||+++|+....  ..                +..+..+.+.....+...  +..+.++||||
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG   84 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG   84 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence            33456999999999999999999974211  00                012223333333333333  46899999999


Q ss_pred             cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-
Q 030880           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-  146 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-  146 (170)
                      +..+.......++.+|++++|+|+...-..+... .+..+..   .++|.++++||+|+.++.  ......++.+.++. 
T Consensus        85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~-~~~~~~~---~~~p~iv~vNK~D~~~~~--~~~~~~~i~~~l~~~  158 (693)
T PRK00007         85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET-VWRQADK---YKVPRIAFVNKMDRTGAD--FYRVVEQIKDRLGAN  158 (693)
T ss_pred             cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH-HHHHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHhCCC
Confidence            9888776777789999999999987653322222 2222222   458889999999987543  12223333333333 


Q ss_pred             ---eEEEEecCCC
Q 030880          147 ---MFIETSAKAG  156 (170)
Q Consensus       147 ---~~~~~s~~~~  156 (170)
                         ..+++|+..+
T Consensus       159 ~~~~~ipisa~~~  171 (693)
T PRK00007        159 PVPIQLPIGAEDD  171 (693)
T ss_pred             eeeEEecCccCCc
Confidence               4466676665

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.62  E-value=1.2e-14  Score=102.15  Aligned_cols=151  Identities=23%  Similarity=0.317  Sum_probs=105.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---------------------------------CcccceeeeEEEEEEEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---------------------------------NTYQATIGIDFLSKTMY   52 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---------------------------------~~~~~~~~~~~~~~~~~   52 (170)
                      ....+|++-+|...-||||||.+|++....                                 .+.....+++...  ..
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAY--Ry   80 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAY--RY   80 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEe--ee
Confidence            345689999999999999999999874110                                 0111122333333  33


Q ss_pred             ECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           53 LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        53 ~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      ..-...+|.+-|||||++|...+..-..-||..|+++|+  +....+..+...-+....+ -..+++..||+|+.+..+.
T Consensus        81 FsT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDA--R~Gvl~QTrRHs~I~sLLG-IrhvvvAVNKmDLvdy~e~  157 (431)
T COG2895          81 FSTEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDA--RKGVLEQTRRHSFIASLLG-IRHVVVAVNKMDLVDYSEE  157 (431)
T ss_pred             cccccceEEEecCCcHHHHhhhhhcccccccEEEEEEec--chhhHHHhHHHHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence            344556899999999999999888888999999999998  4444444444444444432 2446777899999876554


Q ss_pred             CH----HHHHHHHhhcCC---eEEEEecCCCCChHH
Q 030880          133 SI----EEGEAKSRELNV---MFIETSAKAGFNIKV  161 (170)
Q Consensus       133 ~~----~~~~~~~~~~~~---~~~~~s~~~~~~i~~  161 (170)
                      ..    .+-..++.+++.   .++++||+.|.|+-.
T Consensus       158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~  193 (431)
T COG2895         158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS  193 (431)
T ss_pred             HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence            33    334567777775   799999999999754

>TIGR00101 ureG urease accessory protein UreG

Probab=99.60  E-value=3.6e-14  Score=95.24  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (170)
                      ....++++.|......... .  -++.+|.|+|+.+.++...  .....+.      ..-++++||+|+.+......+..
T Consensus        92 ~D~iiIEt~G~~l~~~~~~-~--l~~~~i~vvD~~~~~~~~~--~~~~qi~------~ad~~~~~k~d~~~~~~~~~~~~  160 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFSP-E--LADLTIFVIDVAAGDKIPR--KGGPGIT------RSDLLVINKIDLAPMVGADLGVM  160 (199)
T ss_pred             CCEEEEECCCCCcccccch-h--hhCcEEEEEEcchhhhhhh--hhHhHhh------hccEEEEEhhhccccccccHHHH
Confidence            4567888888432222221 1  2678999999987655321  1112221      12278889999975322333444


Q ss_pred             HHHHhh--cCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          138 EAKSRE--LNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       138 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .+..+.  .+.+++++|+++|+|++++|++|.+.
T Consensus       161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~  194 (199)
T TIGR00101       161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHY  194 (199)
T ss_pred             HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            444444  45799999999999999999998764

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.60  E-value=1.2e-15  Score=103.87  Aligned_cols=111  Identities=19%  Similarity=0.144  Sum_probs=66.1

Q ss_pred             EEEEEEEeCCCcccc------cccchhhhcCCcE--EEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           57 TVRLQLWDTAGQERF------RSLIPSYIRDSSV--AVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~------~~~~~~~~~~~~~--~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ...+.++|||||-+-      .+.....+.....  +++++|..... .---+..++-.....+..++|.|++.||+|+.
T Consensus       115 ~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~  194 (366)
T KOG1532|consen  115 EFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVS  194 (366)
T ss_pred             ccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEeccccc
Confidence            457899999996542      2233333444444  44455533221 12224556666666666789999999999997


Q ss_pred             Ccccc--------CHHHHHHH---------Hh---------hcCCeEEEEecCCCCChHHHhhcCC
Q 030880          128 EKRQV--------SIEEGEAK---------SR---------ELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       128 ~~~~~--------~~~~~~~~---------~~---------~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      +....        ..+++.+-         ..         -.++..+.||+.+|.|.+++|..+-
T Consensus       195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~  260 (366)
T KOG1532|consen  195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVD  260 (366)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHH
Confidence            54110        01111110         00         1146789999999999999998753

>cd00066 G-alpha G protein alpha subunit

Probab=99.60  E-value=8e-15  Score=105.02  Aligned_cols=113  Identities=19%  Similarity=0.240  Sum_probs=83.9

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  124 (170)
                      ..+.+.+||++|++..+..|..++.+++++++|+|+++-          +.+.+....+..+..... .++|+++++||.
T Consensus       159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~  238 (317)
T cd00066         159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK  238 (317)
T ss_pred             cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence            356899999999999999999999999999999999863          456666666666655443 689999999999


Q ss_pred             CCCCc----------------cccCHHHHHHHHhh----------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          125 DLVEK----------------RQVSIEEGEAKSRE----------LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       125 D~~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |+..+                ..-+.+++..+...          ..+..+.++|.+..++..+|+.+..
T Consensus       239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~  308 (317)
T cd00066         239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKD  308 (317)
T ss_pred             HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHH
Confidence            96421                02234455444432          2345677899999999999877643

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.60  E-value=2.3e-14  Score=114.67  Aligned_cols=141  Identities=24%  Similarity=0.260  Sum_probs=90.0

Q ss_pred             CCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC----------------eEEEEEEEeCCCcccccccchhhhcCCc
Q 030880           20 VGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus        20 ~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      ++||||+.++.+......-....+.......+..+.                ..-.+.||||||++.|..+....+..+|
T Consensus       472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD  551 (1049)
T PRK14845        472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD  551 (1049)
T ss_pred             cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence            359999999998766443322222222222222211                0013899999999999888877888999


Q ss_pred             EEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC----------------HHHHH----HH
Q 030880           84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS----------------IEEGE----AK  140 (170)
Q Consensus        84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------~~~~~----~~  140 (170)
                      ++++|+|+++   +++++.+.    .+..   .++|+++++||+|+.+.....                .++..    ..
T Consensus       552 ivlLVVDa~~Gi~~qT~e~I~----~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v  624 (1049)
T PRK14845        552 LAVLVVDINEGFKPQTIEAIN----ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL  624 (1049)
T ss_pred             EEEEEEECcccCCHhHHHHHH----HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            9999999986   44444332    2222   358999999999986432210                01110    00


Q ss_pred             ---Hhh---------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880          141 ---SRE---------------LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       141 ---~~~---------------~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                         ..+               ..++++++||++|+|+++++++|.
T Consensus       625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~  669 (1049)
T PRK14845        625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA  669 (1049)
T ss_pred             hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence               011               135899999999999999998764

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.60  E-value=5.1e-14  Score=99.03  Aligned_cols=123  Identities=13%  Similarity=0.126  Sum_probs=73.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccch---hhhc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP---SYIR   80 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~---~~~~   80 (170)
                      ++...++|+++|.+|+||||++|++++...... .....+..........  .+.++.++||||.........   ..++
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik  111 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIK  111 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHH
Confidence            345789999999999999999999998764221 1111122222222222  356899999999664322111   1122


Q ss_pred             ------CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCc
Q 030880           81 ------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        81 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~  129 (170)
                            ..|++++|..++....-+.-...+..+...++  .-.+++|+.|+.|..++
T Consensus       112 ~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~p  168 (313)
T TIGR00991       112 RFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPP  168 (313)
T ss_pred             HHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCC
Confidence                  68999999665533211122233344444332  22468999999997644

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.60  E-value=3.2e-15  Score=89.99  Aligned_cols=136  Identities=21%  Similarity=0.237  Sum_probs=94.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc----ccccccchhhhcCCcEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ----ERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~----~~~~~~~~~~~~~~~~~i   86 (170)
                      |++++|..|+|||||.+.|.+.....  ..+...++       ...    -.+||||.    +.+.+........+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAve~-------~d~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAVEF-------NDK----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhh--cccceeec-------cCc----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            78999999999999999998765421  22222111       111    15799983    233333344467899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++-.++++++--     -..+...  -..|+|=+++|.|+.+..  ..+..++|..+-|. ++|++|+.+..|+++++++
T Consensus        70 ~v~~and~~s~f-----~p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          70 YVHAANDPESRF-----PPGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeecccCccccC-----Ccccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            999999886521     1111111  235588888999997533  45678889989898 8999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |..
T Consensus       141 L~~  143 (148)
T COG4917         141 LAS  143 (148)
T ss_pred             HHh
Confidence            753

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.58  E-value=6.5e-14  Score=96.86  Aligned_cols=121  Identities=16%  Similarity=0.174  Sum_probs=72.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---c-------
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L-------   74 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~-------   74 (170)
                      ...+++|+++|.+|+|||||+|.+++....... ....+..........  .+.++.+|||||......   .       
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~--~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV--DGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--CCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            356799999999999999999999987653221 111222222222222  346789999999654311   1       


Q ss_pred             chhhhc--CCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCc
Q 030880           75 IPSYIR--DSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK  129 (170)
Q Consensus        75 ~~~~~~--~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  129 (170)
                      ...+++  ..|+++++..++... ... ....+..+...++.  -.++++|.||+|...+
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p  164 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP  164 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence            122333  578888887665432 222 12333444433321  2568999999998644

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=3.2e-14  Score=105.59  Aligned_cols=155  Identities=25%  Similarity=0.285  Sum_probs=104.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--------------------C---------CcccceeeeEEEEEEEEECCe
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--------------------D---------NTYQATIGIDFLSKTMYLEDR   56 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------------~---------~~~~~~~~~~~~~~~~~~~~~   56 (170)
                      +...++++++|...+|||||+.++++...                    .         ....+..+++.......++..
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            34568999999999999999999986311                    0         011122333444444445566


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHH--HHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWI--DEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~--~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      ...++++|+||+..|-..+......+|..++|+|++..   .+|+...+..  ..+.+..+ -..++|++||+|+.+..+
T Consensus       254 ~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq  332 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQ  332 (603)
T ss_pred             ceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccH
Confidence            67899999999999988888889999999999999854   2444322222  22222222 345788889999987655


Q ss_pred             cCHHHHH----HHH-hhcC-----CeEEEEecCCCCChHH
Q 030880          132 VSIEEGE----AKS-RELN-----VMFIETSAKAGFNIKV  161 (170)
Q Consensus       132 ~~~~~~~----~~~-~~~~-----~~~~~~s~~~~~~i~~  161 (170)
                      --.+++.    .+. +..|     +.|++||+.+|+|+-.
T Consensus       333 ~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  333 DRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            4444443    333 3333     4899999999999753

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.58  E-value=1.6e-14  Score=113.41  Aligned_cols=117  Identities=21%  Similarity=0.169  Sum_probs=78.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC---------------CCCc---ccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDK---------------FDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ...||+++|+.++|||||+++|+...               +...   ...+.............+..+.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            34699999999999999999998531               1000   01122112222223345667899999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      +|.......++.+|++++|+|+...-..+.. ..+....   ..+.|.++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~~~~---~~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLRQAL---KENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHHHHH---HcCCCEEEEEEChhccc
Confidence            9888888889999999999998764222111 1112221   24578889999999853

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>smart00275 G_alpha G protein alpha subunit

Probab=99.56  E-value=7.1e-14  Score=100.92  Aligned_cols=111  Identities=16%  Similarity=0.195  Sum_probs=81.6

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  125 (170)
                      ...+.+||.+|+...+..|..++.+++++++|+|+++          ...+.+....+..+.+... .++|++|++||.|
T Consensus       183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D  262 (342)
T smart00275      183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID  262 (342)
T ss_pred             CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence            3578999999999999999999999999999999996          2456666666666655433 6799999999999


Q ss_pred             CCCc---------------cccCHHHHHHHHhh-----------cCCeEEEEecCCCCChHHHhhcCC
Q 030880          126 LVEK---------------RQVSIEEGEAKSRE-----------LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       126 ~~~~---------------~~~~~~~~~~~~~~-----------~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      +..+               ..-+.+.+..+...           ..+..+.++|.+..++..+|+.+.
T Consensus       263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~  330 (342)
T smart00275      263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVK  330 (342)
T ss_pred             hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHH
Confidence            8521               00133444443321           224567888999999999987654

Subunit of G proteins that contains the guanine nucleotide binding site

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.55  E-value=1.3e-13  Score=85.78  Aligned_cols=114  Identities=36%  Similarity=0.405  Sum_probs=81.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +|++++|..|+|||+|+.++....+...+. ++.+                           +......+.+.++.+++|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999997776653332 2221                           223334457788999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      |+.+.+++++.+  |...+......++|.++++||.|+.....+..++..        .++++|++++.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence            999999998766  777766555567889999999998543334333333        34567788888764

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=2.1e-14  Score=99.84  Aligned_cols=162  Identities=18%  Similarity=0.142  Sum_probs=110.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC---Ccccceeee------------------EEEEEEEEEC------CeEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGI------------------DFLSKTMYLE------DRTVR   59 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~------------------~~~~~~~~~~------~~~~~   59 (170)
                      ...+||-++|.-..|||||..+|.+--..   .+.....+.                  +.+...-.+.      .-..+
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~   87 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR   87 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence            56899999999999999999999862111   110000000                  0000000011      12347


Q ss_pred             EEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHH
Q 030880           60 LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEG  137 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~  137 (170)
                      +.|+|.|||+-....+..-..-.|+.++|++++.+..-...+..+-.+...-  -..++++-||+|+..+.+  .+.+++
T Consensus        88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig--ik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG--IKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc--cceEEEEecccceecHHHHHHHHHHH
Confidence            8999999999877766666677899999999997655444555554443332  256889999999975432  346777


Q ss_pred             HHHHhhc---CCeEEEEecCCCCChHHHhhcCCCCC
Q 030880          138 EAKSREL---NVMFIETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       138 ~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      ++|.+.-   +++++++||..+.|+|.+++.|.+.|
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            7777643   67999999999999999999987654

>PRK13768 GTPase; Provisional

Probab=99.53  E-value=5.3e-14  Score=97.84  Aligned_cols=109  Identities=22%  Similarity=0.170  Sum_probs=68.5

Q ss_pred             EEEEEeCCCcccc---cccchhhhc---C--CcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           59 RLQLWDTAGQERF---RSLIPSYIR---D--SSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        59 ~~~i~D~~g~~~~---~~~~~~~~~---~--~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      .+.+||+||+.+.   +..+..+++   .  ++++++++|+........ ...++.........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            6899999997664   333333332   2  899999999975433222 122222211111247999999999998654


Q ss_pred             cccCHHHHHH----------------------------HHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880          130 RQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       130 ~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .+.  ++...                            ..+..+  .+++.+|++++.|++++.++|.+.
T Consensus       178 ~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~  245 (253)
T PRK13768        178 EEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEV  245 (253)
T ss_pred             hhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHH
Confidence            322  11111                            122333  588999999999999999988653

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.52  E-value=5.9e-13  Score=99.14  Aligned_cols=158  Identities=20%  Similarity=0.300  Sum_probs=107.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE--CCeEEEEEEEeCCCcccccccchhhhc----
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--EDRTVRLQLWDTAGQERFRSLIPSYIR----   80 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~g~~~~~~~~~~~~~----   80 (170)
                      ...-+|+|+|..++|||||+.+|.+..   .+.++.+.++....+.-  .....++.+|-..|...+..+....+.    
T Consensus        23 ~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l   99 (472)
T PF05783_consen   23 PSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENL   99 (472)
T ss_pred             CCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccc
Confidence            445789999999999999999987643   23344444444433322  223457899999886666665555444    


Q ss_pred             CCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcC-----------------------------------------------
Q 030880           81 DSSVAVVVYDVASRQSFL-NTSKWIDEVRTERG-----------------------------------------------  112 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~-----------------------------------------------  112 (170)
                      .--.+|+|.|.+.|..+- .+..|+..+..+..                                               
T Consensus       100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~  179 (472)
T PF05783_consen  100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD  179 (472)
T ss_pred             cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence            235688899999985543 35555433322110                                               


Q ss_pred             ---------------CCCeEEEEEeCCCCCCc-----------cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880          113 ---------------SDVIIVLVGNKTDLVEK-----------RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus       113 ---------------~~~p~ivv~nK~D~~~~-----------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                                     .++|++||++|+|....           ..+..+.++.+|..+|+.++.+|++...+++.++.+|
T Consensus       180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi  259 (472)
T PF05783_consen  180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI  259 (472)
T ss_pred             ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence                           04799999999997421           1122455788889999999999999999999888775


Q ss_pred             C
Q 030880          167 P  167 (170)
Q Consensus       167 ~  167 (170)
                      .
T Consensus       260 ~  260 (472)
T PF05783_consen  260 L  260 (472)
T ss_pred             H
Confidence            3

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.51  E-value=6.6e-14  Score=95.07  Aligned_cols=153  Identities=12%  Similarity=0.077  Sum_probs=85.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--eeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------ch----
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP----   76 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~----   76 (170)
                      ++|+++|.+|+||||++|.+++.........  ..+..+........+  ..+.++||||.......       ..    
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence            5899999999999999999999876544321  122233333334445  57899999994322111       11    


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCccccC-------HHHHHHHHhhcCCe
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS-------IEEGEAKSRELNVM  147 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~  147 (170)
                      ....+.|++++|+.++ +-+- .....+..+...++.  -..++|+.|..|......+.       ......+.+..+-.
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~-~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R  156 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTE-EDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR  156 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SH-HHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             hccCCCeEEEEEEecC-cchH-HHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence            1234689999999988 3221 122233333333331  24578888888865543311       12345666667777


Q ss_pred             EEEEecC------CCCChHHHhhcC
Q 030880          148 FIETSAK------AGFNIKVCLMLH  166 (170)
Q Consensus       148 ~~~~s~~------~~~~i~~~~~~l  166 (170)
                      |+..+.+      ....+.++++.+
T Consensus       157 ~~~f~n~~~~~~~~~~qv~~Ll~~i  181 (212)
T PF04548_consen  157 YHVFNNKTKDKEKDESQVSELLEKI  181 (212)
T ss_dssp             EEECCTTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccccchhhhHHHHHHHHHHH
Confidence            7777766      223455555543

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK12740 elongation factor G; Reviewed

Probab=99.51  E-value=2.3e-13  Score=106.57  Aligned_cols=138  Identities=17%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             EcCCCCCHHHHHHHHhcCCCC--C----------------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccch
Q 030880           15 LGDQSVGKTSIITRFMYDKFD--N----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP   76 (170)
Q Consensus        15 ~G~~~~GKstli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~   76 (170)
                      +|+.++|||||+++|+.....  .                +..+..+.......+.  ..++.+.+|||||+..+...+.
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~--~~~~~i~liDtPG~~~~~~~~~   78 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE--WKGHKINLIDTPGHVDFTGEVE   78 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE--ECCEEEEEEECCCcHHHHHHHH
Confidence            599999999999999653211  0                0011122222222222  2457899999999988877788


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC--eEEEEecC
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--MFIETSAK  154 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~  154 (170)
                      .+++.+|++++++|++..........| ..+..   .++|+++++||+|.....  ......++...++.  ....+...
T Consensus        79 ~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~~~--~~~~~~~l~~~l~~~~~~~~~p~~  152 (668)
T PRK12740         79 RALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAGAD--FFRVLAQLQEKLGAPVVPLQLPIG  152 (668)
T ss_pred             HHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCCCC--HHHHHHHHHHHHCCCceeEEeccc
Confidence            889999999999999876554433322 33222   468999999999986432  22333444444443  22334444


Q ss_pred             CCCChH
Q 030880          155 AGFNIK  160 (170)
Q Consensus       155 ~~~~i~  160 (170)
                      .+.++.
T Consensus       153 ~~~~~~  158 (668)
T PRK12740        153 EGDDFT  158 (668)
T ss_pred             CCCCce
Confidence            444443

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.51  E-value=4.4e-13  Score=99.63  Aligned_cols=157  Identities=17%  Similarity=0.189  Sum_probs=114.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ..+-+++.++|+.++|||.|++.++++.+...+..+....+....+...+....+.+-|.+-. ....+...- ..||++
T Consensus       422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~  499 (625)
T KOG1707|consen  422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA  499 (625)
T ss_pred             cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence            345689999999999999999999998887766566655666666666676667888887753 222222222 789999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  164 (170)
                      +++||.+++.+|+.....++.....  ...|+++|++|+|+.+..+...-+-.++++++++ +.+..|.++... .++|.
T Consensus       500 ~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  500 CLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI  576 (625)
T ss_pred             EEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence            9999999999998887766554333  5799999999999976554333333888999998 456667765323 67777


Q ss_pred             cCC
Q 030880          165 LHP  167 (170)
Q Consensus       165 ~l~  167 (170)
                      .|+
T Consensus       577 kL~  579 (625)
T KOG1707|consen  577 KLA  579 (625)
T ss_pred             HHH
Confidence            664

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.48  E-value=2.5e-13  Score=108.28  Aligned_cols=117  Identities=18%  Similarity=0.207  Sum_probs=78.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC------------C----cccceeeeEEEEEEEEE--------------CCe
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD------------N----TYQATIGIDFLSKTMYL--------------EDR   56 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~------------~----~~~~~~~~~~~~~~~~~--------------~~~   56 (170)
                      ..-.||+++|+.++|||||+++|+.....            +    +.....+..........              .+.
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN   96 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence            34569999999999999999999864311            0    00111111211111211              223


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      .+.++++||||+.+|.......++.+|++|+|+|+...-.......| ..+.   ..++|+++++||+|..
T Consensus        97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~  163 (843)
T PLN00116         97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC  163 (843)
T ss_pred             ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence            67899999999999988888889999999999999865332222222 2222   2468999999999986

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.48  E-value=4.8e-13  Score=90.60  Aligned_cols=151  Identities=20%  Similarity=0.246  Sum_probs=83.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC------------cccc----eeeeEEEEEEE---E-------------ECC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN------------TYQA----TIGIDFLSKTM---Y-------------LED   55 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~------------~~~~----~~~~~~~~~~~---~-------------~~~   55 (170)
                      ....+.++|..|+|||||+++++......            ..+.    ..+........   .             ...
T Consensus        21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~  100 (207)
T TIGR00073        21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL  100 (207)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence            45789999999999999999987541100            0000    00000000000   0             000


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (170)
                      ....+.++++.|.-. ..  ..+....+..+.++|+.+.....  ... ...     ...|.++++||+|+.+.......
T Consensus       101 ~~~d~IiIEt~G~l~-~~--~~~~~~~~~~i~Vvd~~~~d~~~--~~~-~~~-----~~~a~iiv~NK~Dl~~~~~~~~~  169 (207)
T TIGR00073       101 DDIDLLFIENVGNLV-CP--ADFDLGEHMRVVLLSVTEGDDKP--LKY-PGM-----FKEADLIVINKADLAEAVGFDVE  169 (207)
T ss_pred             CCCCEEEEecCCCcC-CC--cccccccCeEEEEEecCcccchh--hhh-HhH-----HhhCCEEEEEHHHccccchhhHH
Confidence            123667777777210 00  11112345556777776543211  111 111     23567999999999654333334


Q ss_pred             HHHHHHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880          136 EGEAKSRELN--VMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       136 ~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      +..+..++.+  .+++.+|+++|.|++++|+++.+.
T Consensus       170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            4444444443  789999999999999999998754

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.47  E-value=2.3e-13  Score=99.65  Aligned_cols=157  Identities=18%  Similarity=0.123  Sum_probs=107.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-----cc----ch
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-----SL----IP   76 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~----~~   76 (170)
                      +...-.++++|-|++|||||++.+........+.++++...+..  ..+-.-..++++||||.-..-     ..    ..
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vG--H~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVG--HLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhh--hhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            45567899999999999999999987766544444443222221  223344579999999932211     10    01


Q ss_pred             hhhcCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHH---HHHHHhhcCCeEEEE
Q 030880           77 SYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE---GEAKSRELNVMFIET  151 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~  151 (170)
                      ...+--.+++++.|++..  .|.++....+..+...+ .+.|.|+|+||+|+.....++.+.   .......-+++++++
T Consensus       243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF-aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh-cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence            111223457888898854  67888888888888887 689999999999998776665433   333444455899999


Q ss_pred             ecCCCCChHHHhhc
Q 030880          152 SAKAGFNIKVCLML  165 (170)
Q Consensus       152 s~~~~~~i~~~~~~  165 (170)
                      |+.+.+|+.++...
T Consensus       322 S~~~eegVm~Vrt~  335 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTT  335 (620)
T ss_pred             cccchhceeeHHHH
Confidence            99999998876543

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.47  E-value=8e-15  Score=100.76  Aligned_cols=108  Identities=23%  Similarity=0.119  Sum_probs=59.0

Q ss_pred             EEEEEeCCCcccccccchhhh--------cCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           59 RLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      .+.++|||||.++...+....        ...-++++++|.....+ ...+..++..+......+.|.+.|.||+|+.++
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            789999999998766554433        34567888888764332 222344444444333356999999999999762


Q ss_pred             c----------------------ccCHHHHHHHHhhcC-C-eEEEEecCCCCChHHHhhcC
Q 030880          130 R----------------------QVSIEEGEAKSRELN-V-MFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus       130 ~----------------------~~~~~~~~~~~~~~~-~-~~~~~s~~~~~~i~~~~~~l  166 (170)
                      .                      .....+..+....++ . .++.+|+.+++|+.+++..+
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~i  232 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAI  232 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHH
Confidence            1                      000112222223334 3 79999999999999998765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00416 elongation factor 2; Provisional

Probab=99.46  E-value=5.1e-13  Score=106.41  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=77.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC--C--------------cccceeeeEEEEEEEEEC--------CeEEEEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--N--------------TYQATIGIDFLSKTMYLE--------DRTVRLQLW   63 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~~--------~~~~~~~i~   63 (170)
                      ...||+++|+.++|||||+++|+.....  .              +.....+.........+.        +..+.+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            3459999999999999999999863211  0              000111111111122222        235789999


Q ss_pred             eCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           64 DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        64 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ||||+.+|.......++.+|++++|+|+...-.... ...+..+..   .++|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence            999999988888888999999999999886532222 222233322   358999999999985

>PTZ00258 GTP-binding protein; Provisional

Probab=99.46  E-value=1.8e-12  Score=94.38  Aligned_cols=86  Identities=19%  Similarity=0.135  Sum_probs=58.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCcccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERF   71 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~   71 (170)
                      ...++|.++|.|++|||||+|+|.+........|.++.+.....+.+.+.               ...+.++|+||...-
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g   98 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG   98 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence            34579999999999999999999887654444455554544444443322               235899999994421


Q ss_pred             c-------ccchhhhcCCcEEEEEEeCC
Q 030880           72 R-------SLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        72 ~-------~~~~~~~~~~~~~i~v~d~~   92 (170)
                      .       ......++++|++++|+|+.
T Consensus        99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            1       12233467899999999973

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.46  E-value=2.6e-13  Score=88.48  Aligned_cols=148  Identities=23%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEE-------------EE------E----------------C
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT-------------MY------L----------------E   54 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~-------------~~------~----------------~   54 (170)
                      ++|-+.|++|||||+|+.+++............+.+.++..             ..      +                .
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~~   93 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVLD   93 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhhc
Confidence            78999999999999999998764322211222222222210             00      0                0


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhc-CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIR-DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (170)
                      .....+.|++.+|  ....  ..... ..+.-|+|+|++..+-..  .+-.+.+.      ..=++|+||.|+.+....+
T Consensus        94 ~~~~Dll~iEs~G--NL~~--~~sp~L~d~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~d  161 (202)
T COG0378          94 FPDLDLLFIESVG--NLVC--PFSPDLGDHLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGAD  161 (202)
T ss_pred             CCcCCEEEEecCc--ceec--ccCcchhhceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCcc
Confidence            0113455555555  1111  11111 223667777877542110  00001111      1238889999998888777


Q ss_pred             HHHHHHHHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880          134 IEEGEAKSRELN--VMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       134 ~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .+...+-+++.+  .+++++|.++|+|++++++|+...
T Consensus       162 levm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~  199 (202)
T COG0378         162 LEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ  199 (202)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence            777777777665  799999999999999999998653

>cd01882 BMS1 Bms1

Probab=99.44  E-value=4.1e-12  Score=87.01  Aligned_cols=139  Identities=12%  Similarity=0.128  Sum_probs=81.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .++..|+++|++|+|||||++.+.............+ ..   .+ ......++.++||||.-   .......+.+|+++
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl  108 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-PI---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL  108 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-cE---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence            4557799999999999999999986532211111111 01   11 12245678999999853   22234468899999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCcccc-C--HHHHHH-HHhh--cCCeEEEEecCCCC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEKRQV-S--IEEGEA-KSRE--LNVMFIETSAKAGF  157 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~~-~--~~~~~~-~~~~--~~~~~~~~s~~~~~  157 (170)
                      +++|.+....... ...+..+..   .+.|. ++++||+|+.+.... .  ..+++. +..+  .+.+++.+|+++.-
T Consensus       109 lviDa~~~~~~~~-~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~  182 (225)
T cd01882         109 LLIDASFGFEMET-FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG  182 (225)
T ss_pred             EEEecCcCCCHHH-HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence            9999875433222 122222222   34664 458999998643211 1  122222 2221  24689999988763

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.44  E-value=1.5e-12  Score=94.80  Aligned_cols=155  Identities=15%  Similarity=0.186  Sum_probs=104.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC--CC------------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF--DN------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~   75 (170)
                      -||+++.....|||||+..|+.+..  ..            ....-.+++...+...+.-.+++++|+|||||-.|....
T Consensus         6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV   85 (603)
T COG1217           6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV   85 (603)
T ss_pred             ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence            5899999999999999999987422  11            111223444555555455556899999999999999999


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHh-------hcCCe
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSR-------ELNVM  147 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~~~~  147 (170)
                      .+.++=+|++++++|+....-- ..+-.+..   ....+.+.|||+||+|...++.. -.++...+..       +++.+
T Consensus        86 ERvl~MVDgvlLlVDA~EGpMP-QTrFVlkK---Al~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          86 ERVLSMVDGVLLLVDASEGPMP-QTRFVLKK---ALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhcceEEEEEEcccCCCC-chhhhHHH---HHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            9999999999999999864211 11111222   22245777888999998765421 1233333333       34568


Q ss_pred             EEEEecCCCC----------ChHHHhhcCCC
Q 030880          148 FIETSAKAGF----------NIKVCLMLHPN  168 (170)
Q Consensus       148 ~~~~s~~~~~----------~i~~~~~~l~~  168 (170)
                      ++..|++.|.          ++.-+|+.|.+
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~  192 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILD  192 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHH
Confidence            9999999874          46667766543

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.43  E-value=2.6e-12  Score=91.94  Aligned_cols=101  Identities=15%  Similarity=0.044  Sum_probs=63.4

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CH
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SI  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~  134 (170)
                      ++.+.|+||+|..+-..   .....+|.++++.+......+...+.   .+...     .-++|+||+|+......  ..
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E~-----aDIiVVNKaDl~~~~~a~~~~  216 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIKK---GIMEL-----ADLIVINKADGDNKTAARRAA  216 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHHh---hhhhh-----hheEEeehhcccchhHHHHHH
Confidence            47899999999763322   24668999999977544444433332   12111     12788999998654321  11


Q ss_pred             HHHHHHHhh-------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          135 EEGEAKSRE-------LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       135 ~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .+.......       ...+++.+|++++.|++++++.|.+
T Consensus       217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~  257 (332)
T PRK09435        217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIED  257 (332)
T ss_pred             HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            222222221       1257999999999999999988753

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.43  E-value=7.6e-12  Score=90.28  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=56.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeE---------------EEEEEEeCCCcccccc-
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS-   73 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~-   73 (170)
                      ++|.++|.|++|||||+|+|++........|.++.+.....+.+.+..               ..+.++|+||...-.+ 
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~   82 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   82 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence            789999999999999999999877533333444444443333333321               2589999999432111 


Q ss_pred             ------cchhhhcCCcEEEEEEeCC
Q 030880           74 ------LIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        74 ------~~~~~~~~~~~~i~v~d~~   92 (170)
                            .....++++|++++|+|+.
T Consensus        83 g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         83 GEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence                  1222367999999999984

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.41  E-value=5.8e-12  Score=88.65  Aligned_cols=138  Identities=13%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----------cceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc---c
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTY----------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---I   75 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~   75 (170)
                      .++|+++|.+|+|||||+|.|++.......          ..+...........-.+..+.++++||||.......   |
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999999986543321          122223333344455677889999999993321000   0


Q ss_pred             ---hhh---------------------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           76 ---PSY---------------------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        76 ---~~~---------------------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                         ..|                     =...|++++.++++...--+.-...+..+    ...+++|-|+.|.|.....+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L----s~~vNvIPvIaKaD~lt~~e  159 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL----SKRVNVIPVIAKADTLTPEE  159 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH----TTTSEEEEEESTGGGS-HHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh----cccccEEeEEecccccCHHH
Confidence               000                     12578999999987532111111222333    24588999999999865432


Q ss_pred             cC--HHHHHHHHhhcCCeEEE
Q 030880          132 VS--IEEGEAKSRELNVMFIE  150 (170)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~  150 (170)
                      ..  ...+..-.+..++.+|.
T Consensus       160 l~~~k~~i~~~l~~~~I~~f~  180 (281)
T PF00735_consen  160 LQAFKQRIREDLEENNIKIFD  180 (281)
T ss_dssp             HHHHHHHHHHHHHHTT--S--
T ss_pred             HHHHHHHHHHHHHHcCceeec
Confidence            21  23344444555665444

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.41  E-value=1.1e-12  Score=103.48  Aligned_cols=116  Identities=21%  Similarity=0.153  Sum_probs=76.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------------ccceeeeEEE--EEEEEECCeEEEEEEEeCCCcc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------------YQATIGIDFL--SKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------------~~~~~~~~~~--~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ...+|+++|+.++|||||+++|+.....-.                .....+....  .......+..+.+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            345899999999999999999986321100                0000111111  1111224456789999999999


Q ss_pred             cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           70 RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        70 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      +|.......++.+|++++|+|+...-... ....+.....   .+.|.++++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~---~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALR---ERVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHH---cCCCeEEEEECchhh
Confidence            99888888899999999999987653222 2222222222   246778999999975

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5.6e-12  Score=88.88  Aligned_cols=161  Identities=20%  Similarity=0.166  Sum_probs=94.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC-------CCCCcccceeeeEEEEEEEE-------ECCeEEEEEEEeCCCccc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYD-------KFDNTYQATIGIDFLSKTMY-------LEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~D~~g~~~   70 (170)
                      .+...+|+-++|.-.||||||.+++..-       +.+.......+.+..-..+.       ..++...++++|+||+..
T Consensus         3 ~~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas   82 (522)
T KOG0461|consen    3 SPPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS   82 (522)
T ss_pred             CCCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence            3445599999999999999999998752       11222222222222211111       235567889999999764


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC---HHHHHHHHhhc---
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSREL---  144 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~---  144 (170)
                      .-........-.|..++|+|+.....-+...  -..+.+..  -...+||+||+|..++.+..   ........+.+   
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAE--cLiig~~~--c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t  158 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAE--CLIIGELL--CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST  158 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccch--hhhhhhhh--ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence            3333333334457889999987542111111  11122222  24467788999987653322   12222222222   


Q ss_pred             ----CCeEEEEecCCC----CChHHHhhcCCCC
Q 030880          145 ----NVMFIETSAKAG----FNIKVCLMLHPNT  169 (170)
Q Consensus       145 ----~~~~~~~s~~~~----~~i~~~~~~l~~~  169 (170)
                          +.+++++|+..|    +++.++.+.|.++
T Consensus       159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~  191 (522)
T KOG0461|consen  159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESR  191 (522)
T ss_pred             CcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence                369999999999    8888888776544

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.38  E-value=7.2e-12  Score=89.41  Aligned_cols=110  Identities=17%  Similarity=0.246  Sum_probs=79.5

Q ss_pred             EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCC
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL  126 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~  126 (170)
                      ..+.++|++||...+..|..++.+++++++|.++++-          ..+.+....++.+-+..+ .+.++|++.||.|+
T Consensus       195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL  274 (354)
T KOG0082|consen  195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL  274 (354)
T ss_pred             CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence            6889999999999999999999999999999999842          233344445555555444 68999999999998


Q ss_pred             CCc--------------c-ccCHHHHHHHHhhc----------CCeEEEEecCCCCChHHHhhcCC
Q 030880          127 VEK--------------R-QVSIEEGEAKSREL----------NVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       127 ~~~--------------~-~~~~~~~~~~~~~~----------~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .++              . .-..+++..+.+..          .+-...+.|.+..+|+.+|..+.
T Consensus       275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~  340 (354)
T KOG0082|consen  275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVT  340 (354)
T ss_pred             HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHH
Confidence            632              1 12344454444321          24566778999999999988754

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.35  E-value=5.4e-12  Score=91.12  Aligned_cols=142  Identities=15%  Similarity=0.174  Sum_probs=68.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeee---EEEEEEEEECCeEEEEEEEeCCCcccccccchhh-----h
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGI---DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----I   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~   79 (170)
                      .+++|+|+|.+|+|||||||.|.+-...+.....++.   +........+. .-.+.+||.||.....-....|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            5789999999999999999999863332221111110   11111111111 1258999999965433333333     4


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCC-------CccccC----HHHHHHHHh----h
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV-------EKRQVS----IEEGEAKSR----E  143 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~~----~~~~~~~~~----~  143 (170)
                      ...|.+|++.+    +.|.....++ .++.+   .++|+.+|-+|+|..       .++...    .+++++.+.    +
T Consensus       113 ~~yD~fiii~s----~rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  113 YRYDFFIIISS----ERFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             GG-SEEEEEES----SS--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccCEEEEEeC----CCCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence            57898888776    2343433333 33433   358999999999961       111222    223333332    2


Q ss_pred             cCC---eEEEEecCCCC
Q 030880          144 LNV---MFIETSAKAGF  157 (170)
Q Consensus       144 ~~~---~~~~~s~~~~~  157 (170)
                      .|+   ++|.+|+.+-.
T Consensus       186 ~gv~~P~VFLVS~~dl~  202 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLS  202 (376)
T ss_dssp             TT-SS--EEEB-TTTTT
T ss_pred             cCCCcCceEEEeCCCcc
Confidence            343   78999998744

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.35  E-value=7.5e-12  Score=82.02  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=42.9

Q ss_pred             EEEEEeCCCccc----ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030880           59 RLQLWDTAGQER----FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        59 ~~~i~D~~g~~~----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (170)
                      .+.++|+||...    ....+..++..+|++++|.++++.-+-.+...+.......   ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~---~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD---KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---CCeEEEEEcCC
Confidence            578999999532    3456788889999999999999865544444444444332   23478888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=3.1e-11  Score=93.74  Aligned_cols=120  Identities=21%  Similarity=0.226  Sum_probs=83.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--------------CC----cccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--------------DN----TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ...-.||.++|+..+|||||..+++....              .+    +.....++......+.+.+ .+.++++||||
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPG   85 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPG   85 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCC
Confidence            44557899999999999999999986311              00    1111222333333333333 58999999999


Q ss_pred             cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      |-.|.......++-+|++++|+|+...-..+.-.-|....    ..++|.+++.||+|.....
T Consensus        86 HVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~----~~~vp~i~fiNKmDR~~a~  144 (697)
T COG0480          86 HVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQAD----KYGVPRILFVNKMDRLGAD  144 (697)
T ss_pred             ccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHh----hcCCCeEEEEECccccccC
Confidence            9999999999999999999999998653333333332222    2469999999999986543

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.34  E-value=6.9e-12  Score=89.44  Aligned_cols=101  Identities=18%  Similarity=0.022  Sum_probs=62.3

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--  134 (170)
                      ++.+.|+||+|-...   .......+|.++++-..   .+-+++......+     .++|.++++||+|+.+......  
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~---~~~~el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~  194 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIP---GTGDDLQGIKAGL-----MEIADIYVVNKADGEGATNVTIAR  194 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecC---CccHHHHHHHHHH-----hhhccEEEEEcccccchhHHHHHH
Confidence            578899999985422   22346678888887543   3334444433333     2466799999999865432110  


Q ss_pred             H----HHHHHHhh---cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          135 E----EGEAKSRE---LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       135 ~----~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .    ....+...   .+.+++.+|++++.|+++++++|.+
T Consensus       195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~  235 (300)
T TIGR00750       195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEE  235 (300)
T ss_pred             HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHH
Confidence            0    00111111   2236899999999999999998754

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01900 YchF YchF subfamily

Probab=99.33  E-value=2.2e-11  Score=85.14  Aligned_cols=81  Identities=16%  Similarity=0.144  Sum_probs=54.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc----
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR----   72 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~----   72 (170)
                      +.++|.|++|||||+|+|++........|.++.+.....+.+.+.               ...+.++|+||...-.    
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~   80 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE   80 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence            478999999999999999997764444455554544444444332               1358999999944211    


Q ss_pred             c---cchhhhcCCcEEEEEEeCC
Q 030880           73 S---LIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        73 ~---~~~~~~~~~~~~i~v~d~~   92 (170)
                      .   .....++++|+++.|+|+.
T Consensus        81 glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          81 GLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             HHHHHHHHHHHhCCEEEEEEeCc
Confidence            1   1222367899999999873

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=4.7e-12  Score=96.69  Aligned_cols=153  Identities=20%  Similarity=0.218  Sum_probs=98.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceee----eEEEEEE--------EEECC----eEEEEEEEeCCCccccc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG----IDFLSKT--------MYLED----RTVRLQLWDTAGQERFR   72 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~----~~~~~~~--------~~~~~----~~~~~~i~D~~g~~~~~   72 (170)
                      ..=||++|...+|||-|+..+.+...........+    .++....        +.-++    .---+.++||||++.|.
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFt  554 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFT  554 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhh
Confidence            34589999999999999999987554332222211    1111111        00001    11247899999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC----------------
Q 030880           73 SLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS----------------  133 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----------------  133 (170)
                      .+..+....||.+|+|+|+-+.   ++.       ..+......+.|+||..||+|..-.+...                
T Consensus       555 nlRsrgsslC~~aIlvvdImhGlepqti-------ESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v  627 (1064)
T KOG1144|consen  555 NLRSRGSSLCDLAILVVDIMHGLEPQTI-------ESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDV  627 (1064)
T ss_pred             hhhhccccccceEEEEeehhccCCcchh-------HHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHH
Confidence            9999999999999999998754   222       22222233679999999999974221100                


Q ss_pred             --------HHHHHHHHhh-cC-------------CeEEEEecCCCCChHHHhhcCCC
Q 030880          134 --------IEEGEAKSRE-LN-------------VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       134 --------~~~~~~~~~~-~~-------------~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                              ..-+.+|+.+ ++             +.++++||.+|+||.+++.+|.+
T Consensus       628 ~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~  684 (1064)
T KOG1144|consen  628 QNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQ  684 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHH
Confidence                    0111122211 11             36799999999999999988865

>smart00053 DYNc Dynamin, GTPase

Probab=99.29  E-value=6.1e-11  Score=81.42  Aligned_cols=93  Identities=17%  Similarity=0.188  Sum_probs=52.8

Q ss_pred             EEEEEEeCCCcccc-------------cccchhhhcC-CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880           58 VRLQLWDTAGQERF-------------RSLIPSYIRD-SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        58 ~~~~i~D~~g~~~~-------------~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (170)
                      ..++++|+||....             ..+...|+++ .+.+++|.|+...-.-.........+   .....++++|+||
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~l---d~~~~rti~ViTK  201 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEV---DPQGERTIGVITK  201 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHH---HHcCCcEEEEEEC
Confidence            47899999996321             1245566774 45888899876432211212222222   2246899999999


Q ss_pred             CCCCCccccCHHHHHHHHhh----cCCeEEEEecCCCC
Q 030880          124 TDLVEKRQVSIEEGEAKSRE----LNVMFIETSAKAGF  157 (170)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~  157 (170)
                      .|..++..-    .....+.    ++..|+-+-.....
T Consensus       202 ~D~~~~~~~----~~~~~~~~~~~l~~g~~~v~nr~~~  235 (240)
T smart00053      202 LDLMDEGTD----ARDILENKLLPLRRGYIGVVNRSQK  235 (240)
T ss_pred             CCCCCccHH----HHHHHhCCccccCCCEEEEECCChH
Confidence            998654311    3333332    34456666555443

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=9.6e-12  Score=83.05  Aligned_cols=145  Identities=25%  Similarity=0.336  Sum_probs=88.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-----ccchhhhcCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-----SLIPSYIRDS   82 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-----~~~~~~~~~~   82 (170)
                      .-||+++|.+|+|||++-..+..+... +...++.+++..-..... -++..+.+||++|++.+.     ......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~Rf-lGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRF-LGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhh-hhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            458999999999999987766644321 122222222221111111 134679999999988542     2345568899


Q ss_pred             cEEEEEEeCCChhhHHhHHHH---HHHHHHhcCCCCeEEEEEeCCCCCCccc--cCH----HHHHHHHhhcCCeEEEEec
Q 030880           83 SVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSI----EEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~s~  153 (170)
                      ++++++||++..+--.+...+   ++.+.++. +...+.....|+|+.....  ...    +....+....++.++.+|.
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNS-PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            999999999977554444443   34444433 6677888889999975432  222    2233333444566777776


Q ss_pred             CC
Q 030880          154 KA  155 (170)
Q Consensus       154 ~~  155 (170)
                      .+
T Consensus       162 wD  163 (295)
T KOG3886|consen  162 WD  163 (295)
T ss_pred             hh
Confidence            54

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.28  E-value=3.1e-10  Score=82.59  Aligned_cols=153  Identities=18%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC----CCCCc------------ccce---eeeE--E---EEEEEE-ECCeEEEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD----KFDNT------------YQAT---IGID--F---LSKTMY-LEDRTVRLQL   62 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~----~~~~~------------~~~~---~~~~--~---~~~~~~-~~~~~~~~~i   62 (170)
                      ..+.|.++|+.++|||||+++|.+.    ...+.            ..+.   ++.+  +   ....+. .++-..++.+
T Consensus        16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl   95 (492)
T TIGR02836        16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL   95 (492)
T ss_pred             CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence            4688999999999999999999987    22210            0111   1111  1   111222 2344568999


Q ss_pred             EeCCCccc--------ccc------c---------------chhhhc-CCcEEEEEE-eCC----ChhhHHh-HHHHHHH
Q 030880           63 WDTAGQER--------FRS------L---------------IPSYIR-DSSVAVVVY-DVA----SRQSFLN-TSKWIDE  106 (170)
Q Consensus        63 ~D~~g~~~--------~~~------~---------------~~~~~~-~~~~~i~v~-d~~----~~~s~~~-~~~~~~~  106 (170)
                      +||+|...        -..      -               ....+. +++..++|. |.+    .++.+.+ -.+++.+
T Consensus        96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e  175 (492)
T TIGR02836        96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE  175 (492)
T ss_pred             EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence            99998221        011      0               222344 789988888 654    1123333 3455555


Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC--CCChHHHhhc
Q 030880          107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKVCLML  165 (170)
Q Consensus       107 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~  165 (170)
                      +..   .++|++++.||.|...+.  ..+....+...++++++.+|+..  ...+..+++.
T Consensus       176 Lk~---~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~  231 (492)
T TIGR02836       176 LKE---LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEE  231 (492)
T ss_pred             HHh---cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence            544   469999999999943222  33445566677888877777654  4455555544

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.26  E-value=1e-10  Score=89.40  Aligned_cols=119  Identities=13%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------c----ch
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------L----IP   76 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~----~~   76 (170)
                      ..++|+++|.+|+||||++|.+++........ ...+...........  +..+.++||||......      .    ..
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~Ik  194 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSVK  194 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHHH
Confidence            35789999999999999999999876432221 111222222222233  35799999999654311      1    12


Q ss_pred             hhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC--CeEEEEEeCCCCCC
Q 030880           77 SYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD--VIIVLVGNKTDLVE  128 (170)
Q Consensus        77 ~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~  128 (170)
                      .+++  ..|++++|..++......+-..++..+...++.+  ..+||+.|+.|..+
T Consensus       195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            2333  4899999988764433223335556665555422  34788889999875

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.24  E-value=2.3e-11  Score=85.15  Aligned_cols=54  Identities=24%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             CeEEEEEeCCCCCCccccCHHHHHHHHhhc--CCeEEEEecCCCCChHHHhhcCCC
Q 030880          115 VIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       115 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .+-++++||+|+.+......+...+..+..  +++++.+|+++|+|++++.+||.+
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445888999999754333334444444443  479999999999999999999865

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.24  E-value=1.7e-10  Score=82.06  Aligned_cols=138  Identities=14%  Similarity=0.237  Sum_probs=84.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc----------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---c
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---L   74 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~   74 (170)
                      ..++|+++|+.|+|||||+|.|++....+.          ..++.........+..++-...++++||||....-.   .
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            468999999999999999999998743322          223444555555566677788999999999333111   1


Q ss_pred             c-----------hhhh--------------cCCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           75 I-----------PSYI--------------RDSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        75 ~-----------~~~~--------------~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      |           ..|+              ..+|++++...++.. ++..+. ..+..+.    ..+.+|-|+.|.|...
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls----~~vNlIPVI~KaD~lT  176 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLDIEAMKRLS----KRVNLIPVIAKADTLT  176 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHHHHHHHHHh----cccCeeeeeeccccCC
Confidence            1           1111              147888888876643 222221 1122222    4577888889999865


Q ss_pred             ccccC--HHHHHHHHhhcCCeEEE
Q 030880          129 KRQVS--IEEGEAKSRELNVMFIE  150 (170)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~  150 (170)
                      ..+..  .+.+.+.....++++|.
T Consensus       177 ~~El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         177 DDELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeC
Confidence            43322  34455555666776663

>PRK12289 GTPase RsgA; Reviewed

Probab=99.22  E-value=1.2e-10  Score=84.43  Aligned_cols=93  Identities=17%  Similarity=0.226  Sum_probs=68.7

Q ss_pred             cccchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEE
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE  150 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  150 (170)
                      ..+....++++|.+++|+|+.++. ....+.+|+..+..   .++|+++|+||+|+......  ..........++.++.
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~---~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~  154 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES---TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLF  154 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEE
Confidence            344555688999999999998775 44456777765532   46899999999999643221  2223333567889999


Q ss_pred             EecCCCCChHHHhhcCCCC
Q 030880          151 TSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~~  169 (170)
                      +|++++.|++++++.|...
T Consensus       155 iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        155 ISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEcCCCCCHHHHhhhhccc
Confidence            9999999999999988753

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=8.8e-11  Score=85.23  Aligned_cols=152  Identities=17%  Similarity=0.082  Sum_probs=99.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC---CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF---DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      -|...|.--.|||||+..+.+...   +......++.+......  +.....+.|+|.||++++-+.....+...|.+++
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~--~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL   79 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYR--KLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL   79 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEec--cCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence            467789999999999999987543   22233334444333333  3334489999999999988777777889999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc---CCeEEEEecCCCCChHHHhh
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL---NVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |+++++.-.. ...+.+..+ ... .....++|+||+|..++..+ .+..++.....   +.+++.+|+++|+||+++.+
T Consensus        80 vV~~deGl~~-qtgEhL~iL-dll-gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~  155 (447)
T COG3276          80 VVAADEGLMA-QTGEHLLIL-DLL-GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELKN  155 (447)
T ss_pred             EEeCccCcch-hhHHHHHHH-Hhc-CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHHH
Confidence            9999643111 111222222 222 12345888999999765422 12233333322   45889999999999999998


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      .|.+
T Consensus       156 ~l~~  159 (447)
T COG3276         156 ELID  159 (447)
T ss_pred             HHHH
Confidence            8765

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=1.4e-10  Score=87.91  Aligned_cols=117  Identities=21%  Similarity=0.226  Sum_probs=83.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----------------eeeeEEEEEEEE---ECCeEEEEEEEeCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------TIGIDFLSKTMY---LEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~~---~~~~~~~~~i~D~~   66 (170)
                      ....+|.++|+-++|||+|+.-|..+..++...+                 ..++.....++.   ..+..+-+++.|||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP  205 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP  205 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence            3457899999999999999999987654332111                 111122222221   24567789999999


Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ||..|.......++.+|++++++|+...-++.. .+.+....   ....|+++|+||+|..
T Consensus       206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai---q~~~~i~vviNKiDRL  262 (971)
T KOG0468|consen  206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI---QNRLPIVVVINKVDRL  262 (971)
T ss_pred             CcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH---hccCcEEEEEehhHHH
Confidence            999999999999999999999999987655433 22223322   2469999999999963

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=1.5e-09  Score=77.79  Aligned_cols=84  Identities=18%  Similarity=0.220  Sum_probs=58.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC----------------eEEEEEEEeCCCcc---
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED----------------RTVRLQLWDTAGQE---   69 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~i~D~~g~~---   69 (170)
                      .+++-++|.|++|||||.|.++.........|+.+++...-...++.                ....+.++|.+|--   
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA   81 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA   81 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence            47899999999999999999998876545566665554333332211                12468899998822   


Q ss_pred             ----cccccchhhhcCCcEEEEEEeCC
Q 030880           70 ----RFRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        70 ----~~~~~~~~~~~~~~~~i~v~d~~   92 (170)
                          .....-..-++++|+++-|+++.
T Consensus        82 s~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          82 SKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence                22223344478999999999986

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=5e-10  Score=80.19  Aligned_cols=139  Identities=15%  Similarity=0.223  Sum_probs=80.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-----
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-----   73 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-----   73 (170)
                      ..++++++|++|.|||||+|.|+.......         ...+............++-..+++++||||....-.     
T Consensus        20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w   99 (366)
T KOG2655|consen   20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW   99 (366)
T ss_pred             CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence            358999999999999999999988644322         112333334444444567778899999999332110     


Q ss_pred             --------------------cchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           74 --------------------LIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        74 --------------------~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                                          ..+..+.  .+|++++-+.++.. ++..+.-  ..+... ...+++|-|+.|.|.....+
T Consensus       100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di--~~Mk~l-~~~vNiIPVI~KaD~lT~~E  175 (366)
T KOG2655|consen  100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDI--EFMKKL-SKKVNLIPVIAKADTLTKDE  175 (366)
T ss_pred             hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhH--HHHHHH-hccccccceeeccccCCHHH
Confidence                                1111122  57888888887643 2222211  111111 24678888889999865433


Q ss_pred             cC--HHHHHHHHhhcCCeEEE
Q 030880          132 VS--IEEGEAKSRELNVMFIE  150 (170)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~~  150 (170)
                      +.  ...+.+.+...++.+|.
T Consensus       176 l~~~K~~I~~~i~~~nI~vf~  196 (366)
T KOG2655|consen  176 LNQFKKRIRQDIEEHNIKVFD  196 (366)
T ss_pred             HHHHHHHHHHHHHHcCcceec
Confidence            21  23344444455554443

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.17  E-value=2e-10  Score=81.44  Aligned_cols=87  Identities=15%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             hhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           77 SYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      ..+.++|.+++|+|+.++. ++..+.+|+..+..   .++|+++|+||+|+.+...  ......+....+.+++.+|+++
T Consensus        74 ~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~---~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~  148 (287)
T cd01854          74 VIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA---AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT  148 (287)
T ss_pred             eEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH---cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence            3478999999999999987 88888888876654   3589999999999965421  1222333455788999999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      +.|+++++..|..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999999998864

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=99.16  E-value=2.2e-10  Score=81.66  Aligned_cols=87  Identities=20%  Similarity=0.194  Sum_probs=65.9

Q ss_pred             hcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                      ..++|.+++|+|+.++.+... +.+|+..+..   .++|+++|+||+|+.+... ...+.....+..+++++.+|++++.
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~  153 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE  153 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            589999999999988866544 4677666543   4689999999999963321 1233445556678899999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |++++++.+...
T Consensus       154 gi~~L~~~l~gk  165 (298)
T PRK00098        154 GLDELKPLLAGK  165 (298)
T ss_pred             cHHHHHhhccCc
Confidence            999999988653

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=4e-10  Score=81.84  Aligned_cols=134  Identities=22%  Similarity=0.264  Sum_probs=88.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc-C-----------CCCCc--------ccceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY-D-----------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~-~-----------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      .+.-..+|+..|.+|||||-.+|+- +           +....        -....++.+.+..+..+..+..+++.|||
T Consensus        10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP   89 (528)
T COG4108          10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP   89 (528)
T ss_pred             hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence            3456789999999999999998873 1           00000        00112233333334445556789999999


Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN  145 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (170)
                      ||+.|..-.-+.+..+|.+++|+|+...  .+. ..++++.++   .++.||+-++||.|.....  +.+...+..+.++
T Consensus        90 GHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfeVcr---lR~iPI~TFiNKlDR~~rd--P~ELLdEiE~~L~  162 (528)
T COG4108          90 GHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFEVCR---LRDIPIFTFINKLDREGRD--PLELLDEIEEELG  162 (528)
T ss_pred             CccccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHHHHh---hcCCceEEEeeccccccCC--hHHHHHHHHHHhC
Confidence            9999998888889999999999998743  222 223333332   2579999999999974332  3455555666665


Q ss_pred             Ce
Q 030880          146 VM  147 (170)
Q Consensus       146 ~~  147 (170)
                      +.
T Consensus       163 i~  164 (528)
T COG4108         163 IQ  164 (528)
T ss_pred             cc
Confidence            53

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.15  E-value=3.8e-11  Score=89.13  Aligned_cols=156  Identities=21%  Similarity=0.369  Sum_probs=119.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ..+++|+-|+|..++|||+|+.+++.+.+.....+ .+ ..+.+++..++....+-+.|-+|..     ...|...+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~-~~~kkE~vv~gqs~lLlirdeg~~~-----~aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EG-GRFKKEVVVDGQSHLLLIRDEGGHP-----DAQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCC-cC-ccceeeEEeeccceEeeeecccCCc-----hhhhhhhccce
Confidence            35789999999999999999999998877655333 32 3445666677878888888888733     35667789999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CccccCHHHHHHHHhhc-CCeEEEEecCCCCChHH
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKV  161 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~  161 (170)
                      |+||.+.+.++|+.+..+...+..+.. ..+|.++++++.-..  .++.+...++.+++..+ .+.+|++++.+|.++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            999999999999999888887765543 567888887765443  23445556666655544 57999999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      .|..+++
T Consensus       180 vf~~~~~  186 (749)
T KOG0705|consen  180 VFQEVAQ  186 (749)
T ss_pred             HHHHHHH
Confidence            9988764

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.13  E-value=4.2e-11  Score=81.87  Aligned_cols=148  Identities=15%  Similarity=0.096  Sum_probs=82.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC----------CCcccce----------------eeeEEEEEEEEECC------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------DNTYQAT----------------IGIDFLSKTMYLED------   55 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~----------~~~~~~~----------------~~~~~~~~~~~~~~------   55 (170)
                      +.+.|-+.|+||+|||||++.|.....          .+...|.                .....+.+...-.+      
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls  107 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS  107 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence            457899999999999999998864200          0000010                01122222222211      


Q ss_pred             ------------eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880           56 ------------RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        56 ------------~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (170)
                                  .++.+.+++|.|-.+-.   .....-+|.+++|..+.-.+..+.++.=+-++.        =++|+||
T Consensus       108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK  176 (266)
T PF03308_consen  108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK  176 (266)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred             HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence                        24688899998743322   223557999999999887666555554333331        2788899


Q ss_pred             CCCCCccccCHHHHHHHH---hhc----CCeEEEEecCCCCChHHHhhcCC
Q 030880          124 TDLVEKRQVSIEEGEAKS---REL----NVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~---~~~----~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .|....... ..+.+...   ...    ..+++.+|+.++.|++++++.|.
T Consensus       177 aD~~gA~~~-~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~  226 (266)
T PF03308_consen  177 ADRPGADRT-VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAID  226 (266)
T ss_dssp             -SHHHHHHH-HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHH
T ss_pred             CChHHHHHH-HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHH
Confidence            996433221 22222222   111    24899999999999999998764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=4.9e-10  Score=79.92  Aligned_cols=122  Identities=20%  Similarity=0.266  Sum_probs=79.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccee-eeEEEEEEEEE------CCeE----------------------
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDFLSKTMYL------EDRT----------------------   57 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~~~------~~~~----------------------   57 (170)
                      ..+.-|+++|+-+.||||||+.|+.+.++....-.. +.+.....+..      ++..                      
T Consensus        56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR  135 (532)
T KOG1954|consen   56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR  135 (532)
T ss_pred             ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence            345669999999999999999999987764322111 11222221111      1111                      


Q ss_pred             -----------EEEEEEeCCCc---------c--cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC
Q 030880           58 -----------VRLQLWDTAGQ---------E--RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV  115 (170)
Q Consensus        58 -----------~~~~i~D~~g~---------~--~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  115 (170)
                                 -.++++||||.         +  .|......+...+|.++++||+..-+--++.++.+..+.   +..-
T Consensus       136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~Ed  212 (532)
T KOG1954|consen  136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHED  212 (532)
T ss_pred             HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCcc
Confidence                       26889999991         1  133456777889999999999865544444555444444   4456


Q ss_pred             eEEEEEeCCCCCCccc
Q 030880          116 IIVLVGNKTDLVEKRQ  131 (170)
Q Consensus       116 p~ivv~nK~D~~~~~~  131 (170)
                      .+-||.||.|..+.++
T Consensus       213 kiRVVLNKADqVdtqq  228 (532)
T KOG1954|consen  213 KIRVVLNKADQVDTQQ  228 (532)
T ss_pred             eeEEEeccccccCHHH
Confidence            7788899999876544

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.12  E-value=7e-11  Score=82.72  Aligned_cols=148  Identities=16%  Similarity=0.103  Sum_probs=91.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc--ccc------chhhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF--RSL------IPSYI   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~--~~~------~~~~~   79 (170)
                      +..-|.++|-.++|||||+++|+.....+...-+.+.+........+... .+.+.||-|.-.-  ..+      .....
T Consensus       177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~ATLeeV  255 (410)
T KOG0410|consen  177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQATLEEV  255 (410)
T ss_pred             CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence            34568999999999999999999665544434344445444444444433 6788999983211  111      12225


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe----EEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI----IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      ..+|.++-|.|+++|+.-+.-...+..+...--+..|    ++=|-||+|..+.. ..       .+.++  .+.+|+++
T Consensus       256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~isalt  325 (410)
T KOG0410|consen  256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGISALT  325 (410)
T ss_pred             hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc-Cc-------cccCC--cccccccc
Confidence            6899999999999996544433444444333212233    35556888863321 11       22233  57799999


Q ss_pred             CCChHHHhhcC
Q 030880          156 GFNIKVCLMLH  166 (170)
Q Consensus       156 ~~~i~~~~~~l  166 (170)
                      |.|++++.+.+
T Consensus       326 gdgl~el~~a~  336 (410)
T KOG0410|consen  326 GDGLEELLKAE  336 (410)
T ss_pred             CccHHHHHHHH
Confidence            99999988754

>PRK12288 GTPase RsgA; Reviewed

Probab=99.12  E-value=4.7e-10  Score=81.24  Aligned_cols=88  Identities=16%  Similarity=0.141  Sum_probs=67.6

Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                      ..|+|.+++|++++...++..+.+|+..+..   .++|+++|+||+|+.+.... ...+.....+..+++++.+|++++.
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            4679999999999888899999999875532   46899999999999654321 1222333345678899999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |++++++.|...
T Consensus       195 GideL~~~L~~k  206 (347)
T PRK12288        195 GLEELEAALTGR  206 (347)
T ss_pred             CHHHHHHHHhhC
Confidence            999999988653

>cd01855 YqeH YqeH

Probab=99.12  E-value=1.6e-10  Score=77.25  Aligned_cols=91  Identities=24%  Similarity=0.264  Sum_probs=63.0

Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcC
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELN  145 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~  145 (170)
                      +..++..+++++|++++|+|++++..-     |...+... ..+.|+++|+||+|+.+.. ........+.     +..+
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~-~~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLF-GGNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHh-cCCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcC
Confidence            466778889999999999999876421     22222222 2468999999999986533 2233344443     2233


Q ss_pred             C---eEEEEecCCCCChHHHhhcCCC
Q 030880          146 V---MFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       146 ~---~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .   .++.+|+++|.|+++++++|.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~  122 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKK  122 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHH
Confidence            3   6899999999999999998764

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=1.1e-09  Score=73.96  Aligned_cols=142  Identities=13%  Similarity=0.205  Sum_probs=78.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---cccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---RSLI   75 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---~~~~   75 (170)
                      -+++|+++|.+|.|||||+|.+......+.         ...+.........+.-.+-..+++++||||...+   ...|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            368999999999999999999987544321         1112222233333334566778999999994331   1111


Q ss_pred             -----------hhhh------------c--CCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCC-
Q 030880           76 -----------PSYI------------R--DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE-  128 (170)
Q Consensus        76 -----------~~~~------------~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~-  128 (170)
                                 ..|+            .  .++++++-+..+.. ++..+. ..+..+.    .-+.++-|+.|.|-.. 
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt----~vvNvvPVIakaDtlTl  199 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLT----EVVNVVPVIAKADTLTL  199 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHh----hhheeeeeEeecccccH
Confidence                       1111            1  46777777776643 332221 2222222    2356777779999642 


Q ss_pred             -ccccCHHHHHHHHhhcCCeEEEEecC
Q 030880          129 -KRQVSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (170)
                       ++..-.+.+++-....++.++.-.+.
T Consensus       200 eEr~~FkqrI~~el~~~~i~vYPq~~f  226 (336)
T KOG1547|consen  200 EERSAFKQRIRKELEKHGIDVYPQDSF  226 (336)
T ss_pred             HHHHHHHHHHHHHHHhcCccccccccc
Confidence             22222344444455566666555444

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.06  E-value=1.1e-09  Score=75.98  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=92.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC---C-------CCCc----ccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD---K-------FDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~---~-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      .+.+||..+|.-..|||||...+..-   .       +...    .....+++.....+.+.-....+..+|+||+..|-
T Consensus        10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv   89 (394)
T COG0050          10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence            45689999999999999998876531   0       0000    01123334444444444455678899999999998


Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcCC--
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELNV--  146 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~--  146 (170)
                      ..+..-..+.|+.|+|+++++..-- ..+.   .+.-...-++| ++++.||+|+.+..+.   -..+.+.+..+++.  
T Consensus        90 KNMItgAaqmDgAILVVsA~dGpmP-qTrE---HiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g  165 (394)
T COG0050          90 KNMITGAAQMDGAILVVAATDGPMP-QTRE---HILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG  165 (394)
T ss_pred             HHHhhhHHhcCccEEEEEcCCCCCC-cchh---hhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence            8887778899999999999875221 1111   11111123576 5666799999864332   24556777777764  


Q ss_pred             ---eEEEEecCC
Q 030880          147 ---MFIETSAKA  155 (170)
Q Consensus       147 ---~~~~~s~~~  155 (170)
                         +++.-|++.
T Consensus       166 d~~Pii~gSal~  177 (394)
T COG0050         166 DDTPIIRGSALK  177 (394)
T ss_pred             CCcceeechhhh
Confidence               566666553

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.04  E-value=1.1e-09  Score=76.08  Aligned_cols=101  Identities=17%  Similarity=0.056  Sum_probs=63.0

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH-
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI-  134 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-  134 (170)
                      -++.+.|++|.|-.+-.   .....-+|.++++--..-.+..+..+.=+-++.        =++|+||.|.......-. 
T Consensus       142 aG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vINKaD~~~A~~a~r~  210 (323)
T COG1703         142 AGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVINKADRKGAEKAARE  210 (323)
T ss_pred             cCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEeccChhhHHHHHHH
Confidence            34688899998854322   233456888888887766666655555333332        278889999643321111 


Q ss_pred             -HHHHHHH----hhcC--CeEEEEecCCCCChHHHhhcCC
Q 030880          135 -EEGEAKS----RELN--VMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       135 -~~~~~~~----~~~~--~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                       ..+....    .+.+  -+++.+|+.+|+|++++++.+.
T Consensus       211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~  250 (323)
T COG1703         211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIE  250 (323)
T ss_pred             HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHH
Confidence             1111111    1223  3899999999999999998764

>cd01859 MJ1464 MJ1464

Probab=99.04  E-value=2.5e-10  Score=73.95  Aligned_cols=90  Identities=22%  Similarity=0.196  Sum_probs=60.4

Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                      .+....++++|++++|+|++++...... .+...+ .  ..+.|+++++||+|+.+....  .....+....+.+++.+|
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~-~--~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS   77 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYV-L--ELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS   77 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHH-H--hCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence            4556677889999999999876432221 111111 1  236899999999998543211  112233344567899999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      ++++.|++++++.+.+
T Consensus        78 a~~~~gi~~L~~~l~~   93 (156)
T cd01859          78 AKERLGTKILRRTIKE   93 (156)
T ss_pred             ccccccHHHHHHHHHH
Confidence            9999999999988754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.04  E-value=2.5e-08  Score=67.99  Aligned_cols=109  Identities=13%  Similarity=0.185  Sum_probs=75.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIR   80 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~   80 (170)
                      ..-||+++|-|++|||||+..+...........+++.++.+-.+...+  ..+++.|.||.-+-       ........+
T Consensus        61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr  138 (364)
T KOG1486|consen   61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR  138 (364)
T ss_pred             CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence            467999999999999999999987665444445555666666665555  56899999983221       123344467


Q ss_pred             CCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEE
Q 030880           81 DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIV  118 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~i  118 (170)
                      .+|.+++|.|++..+.-.. +...+..+........|-|
T Consensus       139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pni  177 (364)
T KOG1486|consen  139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNI  177 (364)
T ss_pred             cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCe
Confidence            8999999999997765543 5666666654443344433

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.6e-09  Score=77.54  Aligned_cols=158  Identities=16%  Similarity=0.290  Sum_probs=97.3

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-----------------------eeeeEEEEEEEEEC-----
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------------------TIGIDFLSKTMYLE-----   54 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~-----   54 (170)
                      +.+...++|++++|...+|||||+..|..+...+..-.                       ..+++...+.+++.     
T Consensus       161 d~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta  240 (591)
T KOG1143|consen  161 DSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA  240 (591)
T ss_pred             CcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence            34456689999999999999999998887543221110                       11222222222211     


Q ss_pred             -----CeEEEEEEEeCCCcccccccchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           55 -----DRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        55 -----~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                           ...-.++++|.+|+.+|.......+.  ..|..+++++++..-.+ ..+..+..+.   ..++|++++.+|+|+.
T Consensus       241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~-tTrEHLgl~~---AL~iPfFvlvtK~Dl~  316 (591)
T KOG1143|consen  241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITW-TTREHLGLIA---ALNIPFFVLVTKMDLV  316 (591)
T ss_pred             HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcc-ccHHHHHHHH---HhCCCeEEEEEeeccc
Confidence                 12235789999999999876655554  36778888887755332 1222222222   3579999999999997


Q ss_pred             Cccc------------------------cCHHHHHHHHhhc---C-CeEEEEecCCCCChHHHhh
Q 030880          128 EKRQ------------------------VSIEEGEAKSREL---N-VMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus       128 ~~~~------------------------~~~~~~~~~~~~~---~-~~~~~~s~~~~~~i~~~~~  164 (170)
                      ++..                        -+.+++..-+++.   + .++|.+|+.+|+|++-+-.
T Consensus       317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~  381 (591)
T KOG1143|consen  317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT  381 (591)
T ss_pred             cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence            5411                        1122222222221   2 4899999999999876543

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=99.01  E-value=3.5e-09  Score=78.34  Aligned_cols=113  Identities=16%  Similarity=0.179  Sum_probs=80.2

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  124 (170)
                      ....+.++|++|+...+..|..++.+++++|+|+++++-          ..+.+.-..+..+-.... .+.|++|+.||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            446789999999999999999999999999999998731          334554555555544433 689999999999


Q ss_pred             CCCCc----------------cc--cCHHHHHHHHhh------------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          125 DLVEK----------------RQ--VSIEEGEAKSRE------------LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       125 D~~~~----------------~~--~~~~~~~~~~~~------------~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |+..+                ..  -..+.+..+...            ..+.+..++|.+...+..+|+.+.+
T Consensus       314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~  387 (389)
T PF00503_consen  314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD  387 (389)
T ss_dssp             HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence            97421                11  234555555432            2235678999999999999987654

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]

Probab=98.97  E-value=2.7e-10  Score=76.47  Aligned_cols=113  Identities=14%  Similarity=0.164  Sum_probs=82.8

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  124 (170)
                      ....+.+.|.+|+..-+..|..++++...++++..++          +.+.+++.+..+..+..+.+ .+.++|+..||.
T Consensus       197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKk  276 (359)
T KOG0085|consen  197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  276 (359)
T ss_pred             hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechh
Confidence            3456789999999988899999999988887776554          45677778888888877776 788999999999


Q ss_pred             CCCCc----------------cccCHHHHHHHHhhc----C------CeEEEEecCCCCChHHHhhcCCC
Q 030880          125 DLVEK----------------RQVSIEEGEAKSREL----N------VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       125 D~~~~----------------~~~~~~~~~~~~~~~----~------~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |+.++                .+.+.+.++++....    +      +--..+.|.+.+||.-+|..+..
T Consensus       277 DlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkD  346 (359)
T KOG0085|consen  277 DLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKD  346 (359)
T ss_pred             hhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHH
Confidence            98632                223445556665433    1      12345778888999999876543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.96  E-value=2.1e-09  Score=68.46  Aligned_cols=54  Identities=28%  Similarity=0.349  Sum_probs=37.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      +++++|.+|+|||||+|++.+....... ...+.+........++   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999999987654221 1122233333344433   5799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.94  E-value=2.3e-09  Score=78.32  Aligned_cols=93  Identities=28%  Similarity=0.335  Sum_probs=68.1

Q ss_pred             cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH----HHhh
Q 030880           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA----KSRE  143 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~~  143 (170)
                      .+.|..+...+.+.++++++|+|+.+..     ..|..++.+.. .+.|+++|+||+|+.+.. ...+++.+    ++++
T Consensus        50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~  122 (360)
T TIGR03597        50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE  122 (360)
T ss_pred             HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence            4567777888888999999999987653     22444544443 367999999999996532 33344443    3556


Q ss_pred             cCC---eEEEEecCCCCChHHHhhcCC
Q 030880          144 LNV---MFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       144 ~~~---~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .++   .++.+||++|.|++++|+.|.
T Consensus       123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~  149 (360)
T TIGR03597       123 LGLKPVDIILVSAKKGNGIDELLDKIK  149 (360)
T ss_pred             cCCCcCcEEEecCCCCCCHHHHHHHHH
Confidence            676   489999999999999999875

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.93  E-value=3.4e-09  Score=71.65  Aligned_cols=156  Identities=17%  Similarity=0.148  Sum_probs=90.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc---chhhhcCCcEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL---IPSYIRDSSVA   85 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~---~~~~~~~~~~~   85 (170)
                      +.+|+++|...+|||++-....++..+.+.-.... +.....-.+.+.-+.+.+||.|||..+-.-   ....++++.+.
T Consensus        27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflES-Tski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLES-TSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhheeeeccCCCceeEeec-cCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            35699999999999998877776654433211111 111111223345578999999998765432   24557899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCcc-ccC----------HHHHHHHHhhcCCeEEEEe
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKR-QVS----------IEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~-~~~----------~~~~~~~~~~~~~~~~~~s  152 (170)
                      ++|+|+.+. -.+.+.++...+.+..  .+++.+=|.+.|.|-.... .+.          .+.+........+.|+.+|
T Consensus       106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            999997644 2222333333333322  2677888889999965321 111          1111222223345777777


Q ss_pred             cCCCCChHHHhhcCC
Q 030880          153 AKAGFNIKVCLMLHP  167 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~  167 (170)
                      .. .-.+-|.|..+.
T Consensus       185 Iy-DHSIfEAFSkvV  198 (347)
T KOG3887|consen  185 IY-DHSIFEAFSKVV  198 (347)
T ss_pred             ec-chHHHHHHHHHH
Confidence            65 445556555443

>cd01858 NGP_1 NGP-1

Probab=98.89  E-value=8.3e-09  Score=66.93  Aligned_cols=55  Identities=25%  Similarity=0.278  Sum_probs=36.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ..++++++|.+|+|||||+|+|.+...... ..+..+  .....+..+.   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence            467899999999999999999998654322 122222  2222222222   378999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.89  E-value=2.3e-08  Score=71.96  Aligned_cols=158  Identities=18%  Similarity=0.216  Sum_probs=93.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccce--------------eeeEEEEEEEEECC----------------
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT--------------IGIDFLSKTMYLED----------------   55 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----------------   55 (170)
                      ....+.+...|.-..|||||+..|..+...+..-.+              .+.+..-.....++                
T Consensus       114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~  193 (527)
T COG5258         114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA  193 (527)
T ss_pred             CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence            455688999999999999999988766443321110              01111111111111                


Q ss_pred             -----eEEEEEEEeCCCcccccccchhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           56 -----RTVRLQLWDTAGQERFRSLIPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        56 -----~~~~~~i~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                           ..--+.++|+.|++.|-+....-+  .+.|..++++.+++.-+- ..+..+-.   ....+.|++++.+|+|+.+
T Consensus       194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi---~~a~~lPviVvvTK~D~~~  269 (527)
T COG5258         194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGI---ALAMELPVIVVVTKIDMVP  269 (527)
T ss_pred             HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhh---hhhhcCCEEEEEEecccCc
Confidence                 113578999999998865443332  578999999998865331 12222222   2234699999999999975


Q ss_pred             ccccC--HHHHHHHH----------------------hhcC---CeEEEEecCCCCChH---HHhhcCC
Q 030880          129 KRQVS--IEEGEAKS----------------------RELN---VMFIETSAKAGFNIK---VCLMLHP  167 (170)
Q Consensus       129 ~~~~~--~~~~~~~~----------------------~~~~---~~~~~~s~~~~~~i~---~~~~~l~  167 (170)
                      ...+.  .+++....                      -..+   ++++.+|+.+|+|++   ++|..|.
T Consensus       270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~Lp  338 (527)
T COG5258         270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLLP  338 (527)
T ss_pred             HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhCC
Confidence            42111  11111111                      1111   489999999999976   4555544

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.89  E-value=3.5e-09  Score=72.86  Aligned_cols=153  Identities=16%  Similarity=0.152  Sum_probs=89.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc-eeeeEEEEEEEEECCeEEEEEEEeCCCc----------ccccccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAGQ----------ERFRSLI   75 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~g~----------~~~~~~~   75 (170)
                      ....+++++|.+++|||+|++-+...+....... ..+.+   ..+...+-+-.+.++|.||-          ..+..+.
T Consensus       134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~T---q~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t  210 (320)
T KOG2486|consen  134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKT---QAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFT  210 (320)
T ss_pred             CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccc---eeeeeeeccceEEEEecCCcccccCCccCcchHhHhH
Confidence            4568999999999999999999887654332222 22222   22223334457899999991          1233344


Q ss_pred             hhhhcC---CcEEEEEEeCCCh-hhHH-hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc------c-----CHHHHHH
Q 030880           76 PSYIRD---SSVAVVVYDVASR-QSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------V-----SIEEGEA  139 (170)
Q Consensus        76 ~~~~~~---~~~~i~v~d~~~~-~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~-----~~~~~~~  139 (170)
                      ..|+.+   ---+.++.|++-+ +..+ ....|+.+      .++|..+|.||||......      .     .....-+
T Consensus       211 ~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~  284 (320)
T KOG2486|consen  211 KSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR  284 (320)
T ss_pred             HHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh------cCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence            555433   2234455565533 1111 12333333      4799999999999742211      1     1111222


Q ss_pred             HHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          140 KSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       140 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .......+++.+|+.++.|++++.-.+++
T Consensus       285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             cceeccCCceeeecccccCceeeeeehhh
Confidence            22223347889999999999998776654

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=1.4e-08  Score=78.25  Aligned_cols=118  Identities=24%  Similarity=0.215  Sum_probs=81.4

Q ss_pred             CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCC------------CCc--ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DNT--YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .++....--+++++..-..|||||+..|+....            .+.  ...+.+++.....+..-...+.++++|+||
T Consensus         2 ~~~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspg   81 (887)
T KOG0467|consen    2 LQKGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPG   81 (887)
T ss_pred             CCCCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCC
Confidence            345556667899999999999999999986422            111  112223333333333445678999999999


Q ss_pred             cccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           68 QERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      |-.|.+......+-+|++++++|+...   +++.-+++-       -..+...++|+||+|.
T Consensus        82 hvdf~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~-------~~~~~~~~lvinkidr  136 (887)
T KOG0467|consen   82 HVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQA-------WIEGLKPILVINKIDR  136 (887)
T ss_pred             ccchhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHH-------HHccCceEEEEehhhh
Confidence            999999999999999999999998754   343333221       1134556888999993

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=1.2e-07  Score=72.50  Aligned_cols=145  Identities=22%  Similarity=0.280  Sum_probs=84.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEE---------------------------------------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLS---------------------------------------   48 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------   48 (170)
                      ...||++.|..+.||||++|+++..+..+...-.++..+..                                       
T Consensus       108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~  187 (749)
T KOG0448|consen  108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG  187 (749)
T ss_pred             cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence            45799999999999999999998765433322111100000                                       


Q ss_pred             ----EEEEECCe-----EEEEEEEeCCCcc---cccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe
Q 030880           49 ----KTMYLEDR-----TVRLQLWDTAGQE---RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI  116 (170)
Q Consensus        49 ----~~~~~~~~-----~~~~~i~D~~g~~---~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  116 (170)
                          ..+.++.+     .-.+.++|.||-+   +..+-...+...+|++|+|.++.+.-+..+. .++.....   .+..
T Consensus       188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs~---~Kpn  263 (749)
T KOG0448|consen  188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVSE---EKPN  263 (749)
T ss_pred             cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhhc---cCCc
Confidence                00011111     0146688999844   3444556667899999999998766544332 23333322   2345


Q ss_pred             EEEEEeCCCCCCccccCHHHHHHHHhhcCC--------eEEEEecCCC
Q 030880          117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNV--------MFIETSAKAG  156 (170)
Q Consensus       117 ~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~  156 (170)
                      +.|+.||.|.......-.+++....+++..        .++.||++.-
T Consensus       264 iFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~  311 (749)
T KOG0448|consen  264 IFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV  311 (749)
T ss_pred             EEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence            677778999865433333444444444432        4688886644

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.82  E-value=1.6e-08  Score=66.49  Aligned_cols=54  Identities=20%  Similarity=0.336  Sum_probs=37.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .++++++|.+++|||||+|++.+...... ..|..+...  ......   ..+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~--~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSM--QEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcce--EEEEeC---CCEEEEECcC
Confidence            47999999999999999999998655322 223333222  222222   2588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]

Probab=98.80  E-value=1.5e-08  Score=69.33  Aligned_cols=71  Identities=20%  Similarity=0.304  Sum_probs=54.3

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  125 (170)
                      .++++.+|.+|+...+..|.+++....++|+|..++.-          +.+.+.-.++..+.+..+ ....+|+..||.|
T Consensus       201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD  280 (379)
T KOG0099|consen  201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  280 (379)
T ss_pred             ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence            35799999999999999999999999999999988731          233443344444444443 5678999999999


Q ss_pred             CC
Q 030880          126 LV  127 (170)
Q Consensus       126 ~~  127 (170)
                      +.
T Consensus       281 ll  282 (379)
T KOG0099|consen  281 LL  282 (379)
T ss_pred             HH
Confidence            85

>cd01858 NGP_1 NGP-1

Probab=98.79  E-value=2.9e-08  Score=64.39  Aligned_cols=85  Identities=19%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             hhcCCcEEEEEEeCCChhh--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           78 YIRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      .++++|.+++|.|+.++..  ...+.+++.    ....++|+++|+||+|+.++... ......+.+.+....+.+|++.
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~----~~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~   79 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLK----KEKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINN   79 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHHHH----hccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccc
Confidence            3779999999999988732  222333322    22345899999999999644321 1222333333333457899999


Q ss_pred             CCChHHHhhcCC
Q 030880          156 GFNIKVCLMLHP  167 (170)
Q Consensus       156 ~~~i~~~~~~l~  167 (170)
                      +.|++++.+.+.
T Consensus        80 ~~~~~~L~~~l~   91 (157)
T cd01858          80 PFGKGSLIQLLR   91 (157)
T ss_pred             cccHHHHHHHHH
Confidence            999999888774

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG4273 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=1e-07  Score=65.02  Aligned_cols=152  Identities=15%  Similarity=0.157  Sum_probs=96.5

Q ss_pred             eeEEEEcCCCC--CHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC--eEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880           10 YKLVFLGDQSV--GKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED--RTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus        10 ~~i~v~G~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ..++++|.+|+  ||.+|+.+|....+.+...+.....++.+++...-  ..+.+.+.-..  +++.-.......-..++
T Consensus         5 p~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwtid~kyysadi~lcishic--de~~lpn~~~a~pl~a~   82 (418)
T KOG4273|consen    5 PCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTIDNKYYSADINLCISHIC--DEKFLPNAEIAEPLQAF   82 (418)
T ss_pred             ceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEecceeeecceeEEeeccc--chhccCCcccccceeeE
Confidence            46789999998  99999999998888766665555566666543221  12233332221  11211122223445678


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCCCCc-----------------------------------
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDLVEK-----------------------------------  129 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~-----------------------------------  129 (170)
                      +++||.+...++..++.|+.......   .-+ +-++||.|..+.                                   
T Consensus        83 vmvfdlse~s~l~alqdwl~htdins---fdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiseteg  159 (418)
T KOG4273|consen   83 VMVFDLSEKSGLDALQDWLPHTDINS---FDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISETEG  159 (418)
T ss_pred             EEEEeccchhhhHHHHhhcccccccc---chhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccccc
Confidence            99999999999999999987653322   222 344799986421                                   


Q ss_pred             ---------cccCHHHHHHHHhhcCCeEEEEecCCC------------CChHHHhhcC
Q 030880          130 ---------RQVSIEEGEAKSRELNVMFIETSAKAG------------FNIKVCLMLH  166 (170)
Q Consensus       130 ---------~~~~~~~~~~~~~~~~~~~~~~s~~~~------------~~i~~~~~~l  166 (170)
                               .-.....+.+|+.+.|+.+++.++.+-            +|+..+|..|
T Consensus       160 ssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal  217 (418)
T KOG4273|consen  160 SSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGAL  217 (418)
T ss_pred             ccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHh
Confidence                     002234567888999999999888432            3676766554

>cd01856 YlqF YlqF

Probab=98.77  E-value=3.2e-08  Score=65.11  Aligned_cols=57  Identities=21%  Similarity=0.274  Sum_probs=37.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..++++++|.+++|||||++++.+...... .+..+.+........+   ..+.++||||.
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            347899999999999999999998765322 1111222222223332   35789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=1.1e-07  Score=71.71  Aligned_cols=139  Identities=10%  Similarity=0.134  Sum_probs=83.1

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ..++++=++++||||+||||||+.|........    .. +.........+...++++..+|.  .... .....+-+|.
T Consensus        65 d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~t----i~-~i~GPiTvvsgK~RRiTflEcp~--Dl~~-miDvaKIaDL  136 (1077)
T COG5192          65 DLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQT----ID-EIRGPITVVSGKTRRITFLECPS--DLHQ-MIDVAKIADL  136 (1077)
T ss_pred             cCCCCeEEEeecCCCCChhHHHHHHHHHHHHhh----hh-ccCCceEEeecceeEEEEEeChH--HHHH-HHhHHHhhhe
Confidence            345678889999999999999998875432111    10 11122223456777999999993  2222 3344677999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccCHHHHHH-----HHhh-cCCeEEEEecCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEEGEA-----KSRE-LNVMFIETSAKA  155 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~-----~~~~-~~~~~~~~s~~~  155 (170)
                      +++++|.+-.--++ ...+++.+..+   +.| ++-|++..|+.....-....-++     |-.- .|+++|.+|...
T Consensus       137 VlLlIdgnfGfEME-TmEFLnil~~H---GmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         137 VLLLIDGNFGFEME-TMEFLNILISH---GMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             eEEEeccccCceeh-HHHHHHHHhhc---CCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            99999987542221 33445555444   345 55567999996543222222222     2221 267888888764

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.76  E-value=2e-07  Score=66.98  Aligned_cols=142  Identities=18%  Similarity=0.195  Sum_probs=78.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC----------ccc-----------ceeeeEEEEEEEE-------------EC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN----------TYQ-----------ATIGIDFLSKTMY-------------LE   54 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~----------~~~-----------~~~~~~~~~~~~~-------------~~   54 (170)
                      .--++++|++|+||||++..+.......          .+.           .-.+.........             ..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~  193 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAK  193 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999886521110          000           0001111110000             01


Q ss_pred             CeEEEEEEEeCCCccccccc----chhh--------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEe
Q 030880           55 DRTVRLQLWDTAGQERFRSL----IPSY--------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN  122 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~----~~~~--------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~n  122 (170)
                      ...+.+.++||||.......    ....        -...+..++|.|++...  +.+.+ ...+....   .+.-++.|
T Consensus       194 ~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~---~~~giIlT  267 (318)
T PRK10416        194 ARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV---GLTGIILT  267 (318)
T ss_pred             hCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC---CCCEEEEE
Confidence            23468999999996532221    1111        12467789999988542  22222 12222211   23367779


Q ss_pred             CCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880          123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      |.|.....    ..+...+...+.++..++  +|++++++
T Consensus       268 KlD~t~~~----G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl  301 (318)
T PRK10416        268 KLDGTAKG----GVVFAIADELGIPIKFIG--VGEGIDDL  301 (318)
T ss_pred             CCCCCCCc----cHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence            99964332    345555667788888887  78888654

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.76  E-value=3.7e-08  Score=63.74  Aligned_cols=82  Identities=20%  Similarity=0.094  Sum_probs=53.5

Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      |.+++|+|+.++.+....  ++.. ......++|+++|+||+|+.+...+ ......+....+..++.+|++++.|++++
T Consensus         1 Dvvl~VvD~~~p~~~~~~--~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~L   76 (155)
T cd01849           1 DVILEVLDARDPLGTRSP--DIER-VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEKK   76 (155)
T ss_pred             CEEEEEEeccCCccccCH--HHHH-HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhhH
Confidence            689999999887654432  2221 1122256899999999998543211 11112233334567899999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      ++.+.+
T Consensus        77 ~~~i~~   82 (155)
T cd01849          77 ESAFTK   82 (155)
T ss_pred             HHHHHH
Confidence            987643

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01855 YqeH YqeH

Probab=98.75  E-value=2e-08  Score=67.20  Aligned_cols=54  Identities=19%  Similarity=0.264  Sum_probs=35.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC---------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ..+++++|.+|+|||||+|.|.+...         .....|.++  ..........   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTT--LDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCee--eeeEEEecCC---CCEEEeCcC
Confidence            46899999999999999999997542         112223322  2223333332   578999998

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd01859 MJ1464 MJ1464

Probab=98.74  E-value=5.3e-08  Score=63.05  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ...+++++|.+++|||||++++.++... ...++.+.+........+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4578999999999999999999976532 2233333332222222222   689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=98.74  E-value=1.8e-08  Score=66.26  Aligned_cols=88  Identities=17%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                      ......++++|.+++|+|++++...... .....    . .+.|+++++||+|+.++...  ....++.+..+..++.+|
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~-~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iS   82 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----L-GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVN   82 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----h-cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEE
Confidence            3445668899999999999876432221 11111    1 34789999999998543211  112122233345789999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      ++++.|++++.+.+.+
T Consensus        83 a~~~~gi~~L~~~l~~   98 (171)
T cd01856          83 AKSGKGVKKLLKAAKK   98 (171)
T ss_pred             CCCcccHHHHHHHHHH
Confidence            9999999999887653

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.73  E-value=7.1e-08  Score=61.44  Aligned_cols=77  Identities=18%  Similarity=0.184  Sum_probs=53.7

Q ss_pred             hhhhcCCcEEEEEEeCCChhhHH--hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFL--NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (170)
                      ...++++|++++|+|+.++.+..  .+..++...    ..++|+++++||+|+.++..  ..+..+..+..+..++.+|+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa   79 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSA   79 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEe
Confidence            34578999999999998876543  234444332    14689999999999864432  23344555566788999999


Q ss_pred             CCCCC
Q 030880          154 KAGFN  158 (170)
Q Consensus       154 ~~~~~  158 (170)
                      +++.+
T Consensus        80 ~~~~~   84 (141)
T cd01857          80 LKENA   84 (141)
T ss_pred             cCCCc
Confidence            98864

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00092 GTP-binding protein YchF

Probab=98.71  E-value=7.8e-08  Score=69.86  Aligned_cols=83  Identities=14%  Similarity=0.079  Sum_probs=57.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER---   70 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   70 (170)
                      +++.++|.|++|||||++.|+.... .....|+++.+.....+.+++.               ...+.+.|.||-..   
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs   82 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS   82 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence            7899999999999999999998876 4443455544444444444332               23678999999433   


Q ss_pred             ----ccccchhhhcCCcEEEEEEeCC
Q 030880           71 ----FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ----~~~~~~~~~~~~~~~i~v~d~~   92 (170)
                          ........++++|+++.|+++.
T Consensus        83 ~g~Glgn~fL~~ir~~d~l~hVvr~f  108 (368)
T TIGR00092        83 KGEGLGNQFLANIREVDIIQHVVRCF  108 (368)
T ss_pred             cccCcchHHHHHHHhCCEEEEEEeCC
Confidence                1223344578999999999984

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.71  E-value=2.1e-07  Score=67.23  Aligned_cols=96  Identities=13%  Similarity=0.087  Sum_probs=55.4

Q ss_pred             EEEEEEEeCCCccccccc-c---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           57 TVRLQLWDTAGQERFRSL-I---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      ++.+.++||+|....... .   ...  ..+.|.+++|.|+...+...+   ....+....  +. --++.||.|.....
T Consensus       222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~---~a~~f~~~~--~~-~giIlTKlD~~~~~  295 (336)
T PRK14974        222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVE---QAREFNEAV--GI-DGVILTKVDADAKG  295 (336)
T ss_pred             CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHH---HHHHHHhcC--CC-CEEEEeeecCCCCc
Confidence            356999999996542221 1   111  225788999999876532211   112222111  12 35667999985433


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880          131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                          -.+...+...+.++..++  +|++++++..
T Consensus       296 ----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        296 ----GAALSIAYVIGKPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             ----cHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence                234445556678777776  7999876543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.70  E-value=6.5e-08  Score=68.41  Aligned_cols=56  Identities=25%  Similarity=0.384  Sum_probs=38.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..++++++|.+|+|||||+|+|.+...... ..|..+..  ...+....   .+.++||||.
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence            458999999999999999999997654322 22322222  22333322   5789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.70  E-value=2.1e-08  Score=64.66  Aligned_cols=59  Identities=25%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      -.++++|++|+|||||+|.|.........      ......+.....+..+..   -.++||||...+
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g---~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDG---GYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTS---EEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCC---cEEEECCCCCcc
Confidence            45789999999999999999986332111      111111222223333332   368999996654

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.70  E-value=2.5e-07  Score=65.18  Aligned_cols=95  Identities=17%  Similarity=0.113  Sum_probs=56.4

Q ss_pred             eEEEEEEEeCCCcccccccchh-------hh-----cCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEe
Q 030880           56 RTVRLQLWDTAGQERFRSLIPS-------YI-----RDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGN  122 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~-------~~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~n  122 (170)
                      .++.+.++||||..........       ..     ..+|..++|.|++.. +.+...    ..+.+..   -+.-++.|
T Consensus       153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~----~~f~~~~---~~~g~IlT  225 (272)
T TIGR00064       153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA----KVFNEAV---GLTGIILT  225 (272)
T ss_pred             CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH----HHHHhhC---CCCEEEEE
Confidence            3468999999996543322111       11     138999999999754 223222    2322222   13466779


Q ss_pred             CCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880          123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus       123 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      |.|.....    ..+.......+.++..++  +|++++++-
T Consensus       226 KlDe~~~~----G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~  260 (272)
T TIGR00064       226 KLDGTAKG----GIILSIAYELKLPIKFIG--VGEKIDDLA  260 (272)
T ss_pred             ccCCCCCc----cHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence            99975433    334455556678777777  788876653

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.70  E-value=8.8e-08  Score=68.11  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=39.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..++++++|.+++|||||+|+|.+..... ...|..+...  ..+..+.   .+.++||||--
T Consensus       120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC---cEEEEECCCcC
Confidence            45899999999999999999999876422 2233333232  2233332   57899999953

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.69  E-value=6e-08  Score=68.66  Aligned_cols=86  Identities=20%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC---------------eEEEEEEEeCCCccc-
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED---------------RTVRLQLWDTAGQER-   70 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~i~D~~g~~~-   70 (170)
                      ...+++-++|.|++|||||+|.|+.........|+.+++.....+.+..               ....++++|++|--. 
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG   97 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG   97 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence            3567999999999999999999999888777788888777666665543               234789999988221 


Q ss_pred             ------ccccchhhhcCCcEEEEEEeCC
Q 030880           71 ------FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ------~~~~~~~~~~~~~~~i~v~d~~   92 (170)
                            ....-..-++.+|+++-|+++.
T Consensus        98 As~G~GLGN~FLs~iR~vDaifhVVr~f  125 (391)
T KOG1491|consen   98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF  125 (391)
T ss_pred             cccCcCchHHHHHhhhhccceeEEEEec
Confidence                  2222334478899998888765

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=4e-09  Score=73.63  Aligned_cols=110  Identities=17%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHH
Q 030880           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEE  136 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~  136 (170)
                      .+.+.|+||++-....+..-..-.|++++++..+.+..-....+.+..+....  =..++++-||+|+..+.+.  ..++
T Consensus       126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiDli~e~~A~eq~e~  203 (466)
T KOG0466|consen  126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLIKESQALEQHEQ  203 (466)
T ss_pred             EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhhhhhHHHHHHHHHH
Confidence            57899999999877666666666788888887764322222223333332221  1557888999999765432  2455


Q ss_pred             HHHHHhhc---CCeEEEEecCCCCChHHHhhcCCCCC
Q 030880          137 GEAKSREL---NVMFIETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       137 ~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      +..|.+.-   +++++++||.-+.|++-+.++|.+.|
T Consensus       204 I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkI  240 (466)
T KOG0466|consen  204 IQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKI  240 (466)
T ss_pred             HHHHHhccccCCCceeeehhhhccChHHHHHHHHhcC
Confidence            66666544   56999999999999999999987654

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=4.4e-08  Score=71.33  Aligned_cols=118  Identities=21%  Similarity=0.279  Sum_probs=87.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC--------CCCCc--------ccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD--------KFDNT--------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~--------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      --+|-++..-.+||||.-.++++-        ...+.        ...-.+++....-++.+=+++++.++||||+..|+
T Consensus        37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~  116 (753)
T KOG0464|consen   37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR  116 (753)
T ss_pred             hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence            357899999999999999998752        11111        01123455666666667777899999999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      -...++++-.|+++.|||.+..-.-+.+..|..    ....++|-..++||+|...+.
T Consensus       117 leverclrvldgavav~dasagve~qtltvwrq----adk~~ip~~~finkmdk~~an  170 (753)
T KOG0464|consen  117 LEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ----ADKFKIPAHCFINKMDKLAAN  170 (753)
T ss_pred             EEHHHHHHHhcCeEEEEeccCCcccceeeeehh----ccccCCchhhhhhhhhhhhhh
Confidence            999999999999999999986644445555633    333568888889999986543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.63  E-value=1.1e-07  Score=61.48  Aligned_cols=56  Identities=20%  Similarity=0.239  Sum_probs=37.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      ....+++++|.+++|||||+|.+.+..... ...+.++.....  ....   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence            346789999999999999999999865322 222333323222  2222   3588999998

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.62  E-value=1.2e-07  Score=68.87  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=35.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcc-cce-----eeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTY-QAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      ++++|.+|+|||||+|+|++....... .+.     ..++.....+..++..   .++||||..++.
T Consensus       208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            789999999999999999976432211 110     0112222223333322   499999976643

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.59  E-value=1.5e-06  Score=59.59  Aligned_cols=86  Identities=16%  Similarity=0.091  Sum_probs=51.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC--CCCCccc-ceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccc------cchhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQ-ATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRS------LIPSY   78 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~------~~~~~   78 (170)
                      ..-|.++|++++|||+|+|+|++.  .+..... ...+.....+..... +....+.++||+|......      .....
T Consensus         7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~   86 (224)
T cd01851           7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA   86 (224)
T ss_pred             EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence            356889999999999999999987  4432211 122223333222221 2346899999999554322      12222


Q ss_pred             hcC--CcEEEEEEeCCCh
Q 030880           79 IRD--SSVAVVVYDVASR   94 (170)
Q Consensus        79 ~~~--~~~~i~v~d~~~~   94 (170)
                      +..  ++.+|+..+....
T Consensus        87 l~~llss~~i~n~~~~~~  104 (224)
T cd01851          87 LATLLSSVLIYNSWETIL  104 (224)
T ss_pred             HHHHHhCEEEEeccCccc
Confidence            333  7777777665543

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.57  E-value=1.3e-06  Score=65.96  Aligned_cols=81  Identities=19%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             EEEEEeCCC-------------cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHH-HhcCCCCeEEEEEeCC
Q 030880           59 RLQLWDTAG-------------QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR-TERGSDVIIVLVGNKT  124 (170)
Q Consensus        59 ~~~i~D~~g-------------~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~p~ivv~nK~  124 (170)
                      +..++|.||             .+..-.+...|+.+.+++|+|+--.   |.+.-+.....+- +..+.+...|+|.+|.
T Consensus       413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKV  489 (980)
T KOG0447|consen  413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKV  489 (980)
T ss_pred             eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence            678999999             1222346678899999999998422   2222222333332 3334677889999999


Q ss_pred             CCCCccccCHHHHHHHHh
Q 030880          125 DLVEKRQVSIEEGEAKSR  142 (170)
Q Consensus       125 D~~~~~~~~~~~~~~~~~  142 (170)
                      |+.+....+++.+++...
T Consensus       490 DlAEknlA~PdRI~kIle  507 (980)
T KOG0447|consen  490 DLAEKNVASPSRIQQIIE  507 (980)
T ss_pred             chhhhccCCHHHHHHHHh
Confidence            999888888888887765

>PRK01889 GTPase RsgA; Reviewed

Probab=98.56  E-value=4e-07  Score=66.61  Aligned_cols=84  Identities=20%  Similarity=0.185  Sum_probs=58.5

Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ..++|.+++|.++..+-....+.+++..+..   .+++.+||+||+|+.+......+....+  ..+++++.+|++++.|
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~---~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE---SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH---cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            5789999999999744444455565555443   3577788999999965411011122222  4578999999999999


Q ss_pred             hHHHhhcCC
Q 030880          159 IKVCLMLHP  167 (170)
Q Consensus       159 i~~~~~~l~  167 (170)
                      ++++..+|.
T Consensus       185 l~~L~~~L~  193 (356)
T PRK01889        185 LDVLAAWLS  193 (356)
T ss_pred             HHHHHHHhh
Confidence            999998875

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.56  E-value=2.1e-07  Score=67.06  Aligned_cols=57  Identities=28%  Similarity=0.377  Sum_probs=39.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ...++.++|-|++|||||||+|.+...... .+..+.+.....+....   .+.++||||-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~-s~~PG~Tk~~q~i~~~~---~i~LlDtPGi  187 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKT-SNRPGTTKGIQWIKLDD---GIYLLDTPGI  187 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHhcccceee-CCCCceecceEEEEcCC---CeEEecCCCc
Confidence            457899999999999999999999776322 22223343333344444   3889999993

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.55  E-value=1.6e-07  Score=66.00  Aligned_cols=59  Identities=19%  Similarity=0.207  Sum_probs=36.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      -.+++|++|+|||||+|+|.....      .........++.....+..++.+   .++||||..++.
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            578899999999999999987322      11111222223334444454333   389999976543

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.55  E-value=5.2e-07  Score=75.12  Aligned_cols=112  Identities=22%  Similarity=0.236  Sum_probs=69.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcc----cce--eeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccchh
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTY----QAT--IGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPS   77 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~   77 (170)
                      .+++|++|+||||++..- +-.++-..    ..+  .+.+.. ......+   +-.++||+|.-        .....|..
T Consensus       114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence            689999999999999876 22222110    000  000000 0011122   35599999922        12234554


Q ss_pred             hhc---------CCcEEEEEEeCCCh-----h----hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           78 YIR---------DSSVAVVVYDVASR-----Q----SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        78 ~~~---------~~~~~i~v~d~~~~-----~----s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ++.         -.|++|+++|+.+-     +    .-..++..+.++....+...|+-|+.||+|+..
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~  257 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA  257 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence            432         48999999998732     1    123467777888888888999999999999864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.54  E-value=4e-07  Score=63.05  Aligned_cols=59  Identities=15%  Similarity=0.409  Sum_probs=43.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccce----eeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT----IGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .++|+-+|..|.|||||+..|.+-.+.....+.    ...........-.+-..++++.||.|
T Consensus        42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG  104 (406)
T KOG3859|consen   42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG  104 (406)
T ss_pred             eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence            589999999999999999999998775543332    22233333334456778999999998

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.53  E-value=2e-07  Score=65.98  Aligned_cols=86  Identities=23%  Similarity=0.198  Sum_probs=57.0

Q ss_pred             cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (170)
                      .....++++|++++|.|+..+.+.+..  ++....    .+.|+++|.||+|+.++...  ....+..+..+..++.+|+
T Consensus        14 ~~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa   85 (276)
T TIGR03596        14 EIKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINA   85 (276)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEEC
Confidence            345568899999999999876443221  111111    25799999999998543211  1122222334668899999


Q ss_pred             CCCCChHHHhhcCC
Q 030880          154 KAGFNIKVCLMLHP  167 (170)
Q Consensus       154 ~~~~~i~~~~~~l~  167 (170)
                      +++.|++++.+.+.
T Consensus        86 ~~~~gi~~L~~~i~   99 (276)
T TIGR03596        86 KKGKGVKKIIKAAK   99 (276)
T ss_pred             CCcccHHHHHHHHH
Confidence            99999999877664

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.51  E-value=8.6e-07  Score=57.55  Aligned_cols=64  Identities=14%  Similarity=0.094  Sum_probs=37.0

Q ss_pred             EEEEEEEeCCCcccccccchh--------hhcCCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPS--------YIRDSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~--------~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      .....++|++|-.+.......        ..-..+.++.++|+.+-.... ....+..++....      +|+.||+|+
T Consensus        86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad------~ivlnk~dl  158 (158)
T cd03112          86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD------RILLNKTDL  158 (158)
T ss_pred             CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC------EEEEecccC
Confidence            356789999996543322221        233588899999976543321 2223333443222      778899995

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.51  E-value=6.5e-07  Score=63.69  Aligned_cols=146  Identities=19%  Similarity=0.173  Sum_probs=91.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc---C-------CCCCc----ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMY---D-------KFDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~---~-------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      +.+.+||--+|.-..|||||-.++..   .       ++...    .....+++.....+.+......+.=.|+||+..|
T Consensus        51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADY  130 (449)
T KOG0460|consen   51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADY  130 (449)
T ss_pred             CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHH
Confidence            34568999999999999999876653   1       11000    0112333343444444444456677899999998


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC--
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN--  145 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  145 (170)
                      -..+..-..+.|+.|+|+.+++..-- ..++.+.-.++   -+++ +++.+||.|+.+..+   +-.-+++++..++|  
T Consensus       131 IKNMItGaaqMDGaILVVaatDG~MP-QTrEHlLLArQ---VGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~  206 (449)
T KOG0460|consen  131 IKNMITGAAQMDGAILVVAATDGPMP-QTREHLLLARQ---VGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFD  206 (449)
T ss_pred             HHHhhcCccccCceEEEEEcCCCCCc-chHHHHHHHHH---cCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence            88777778899999999999986322 22222222222   2344 677789999984432   22345667777776  


Q ss_pred             ---CeEEEEecCC
Q 030880          146 ---VMFIETSAKA  155 (170)
Q Consensus       146 ---~~~~~~s~~~  155 (170)
                         ++++.-||+.
T Consensus       207 Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  207 GDNTPVIRGSALC  219 (449)
T ss_pred             CCCCCeeecchhh
Confidence               3677666543

>PRK12289 GTPase RsgA; Reviewed

Probab=98.50  E-value=2.9e-07  Score=66.99  Aligned_cols=57  Identities=25%  Similarity=0.179  Sum_probs=34.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcc-cce-----eeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTY-QAT-----IGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      .++++|++|+|||||+|.|+........ .+.     ..++.....+..++..   .++||||...
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~  236 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ  236 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence            3799999999999999999975432211 111     0012222333333332   6999999554

>PRK13796 GTPase YqeH; Provisional

Probab=98.50  E-value=4.6e-07  Score=66.53  Aligned_cols=83  Identities=29%  Similarity=0.367  Sum_probs=57.0

Q ss_pred             hcCCc-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH----HhhcCC---eEEE
Q 030880           79 IRDSS-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SRELNV---MFIE  150 (170)
Q Consensus        79 ~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~---~~~~  150 (170)
                      +...+ .+++|+|+.+..     ..|...+.+.. .+.|+++|+||+|+.+. ....+++..+    ++..++   .++.
T Consensus        66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~  138 (365)
T PRK13796         66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVL  138 (365)
T ss_pred             hcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEE
Confidence            44455 889999987643     22444554443 36789999999999643 2333344333    455565   6899


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +|++++.|++++++.|.+
T Consensus       139 vSAk~g~gI~eL~~~I~~  156 (365)
T PRK13796        139 ISAQKGHGIDELLEAIEK  156 (365)
T ss_pred             EECCCCCCHHHHHHHHHH
Confidence            999999999999998743

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.47  E-value=7.3e-07  Score=64.36  Aligned_cols=157  Identities=15%  Similarity=0.199  Sum_probs=89.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------ccce-----eeeEEEEE------------
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQAT-----IGIDFLSK------------   49 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~-----~~~~~~~~------------   49 (170)
                      .+..+.+|+++|...+|||||+..|..+...+.                  ..+.     .+++....            
T Consensus       129 ~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~L  208 (641)
T KOG0463|consen  129 KDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNL  208 (641)
T ss_pred             ccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcc
Confidence            455689999999999999999988876533211                  0111     11111111            


Q ss_pred             --EEEECCeEEEEEEEeCCCcccccccchhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880           50 --TMYLEDRTVRLQLWDTAGQERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        50 --~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  125 (170)
                        .-.+.+..--++|+|.+|+++|......-+.  -.|...+++-++-. ..-..++.+-...   ...+|+.+|.+|+|
T Consensus       209 dWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaG-IiGmTKEHLgLAL---aL~VPVfvVVTKID  284 (641)
T KOG0463|consen  209 DWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAG-IIGMTKEHLGLAL---ALHVPVFVVVTKID  284 (641)
T ss_pred             cceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEeccccc-ceeccHHhhhhhh---hhcCcEEEEEEeec
Confidence              1112233346789999999998765443332  34666666655422 1111222222211   24689999999999


Q ss_pred             CCCccccC--HHHHHHHH--------------------------hhcCCeEEEEecCCCCChHHHhhc
Q 030880          126 LVEKRQVS--IEEGEAKS--------------------------RELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus       126 ~~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +.+++...  ...+.++.                          .+.=|++|++|..+|.|++-+...
T Consensus       285 MCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF  352 (641)
T KOG0463|consen  285 MCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF  352 (641)
T ss_pred             cCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence            87654221  11111111                          122357899999999998866543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.46  E-value=2.4e-06  Score=60.25  Aligned_cols=93  Identities=17%  Similarity=0.210  Sum_probs=68.8

Q ss_pred             cchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880           74 LIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                      +.+.-..+.|-.++++.+.+|+ +...+.+++-....   .++..+||.||+|+.+.......+........|++.+.+|
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s  148 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVS  148 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEec
Confidence            3344455788888899888885 45556665555433   3566788899999986654433456677788999999999


Q ss_pred             cCCCCChHHHhhcCCCC
Q 030880          153 AKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~~  169 (170)
                      ++++.|++++.+.+...
T Consensus       149 ~~~~~~~~~l~~~l~~~  165 (301)
T COG1162         149 AKNGDGLEELAELLAGK  165 (301)
T ss_pred             CcCcccHHHHHHHhcCC
Confidence            99999999999988654

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.45  E-value=1.8e-05  Score=50.67  Aligned_cols=112  Identities=15%  Similarity=0.266  Sum_probs=63.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCC-Cccc--------------cc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA-GQER--------------FR   72 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-g~~~--------------~~   72 (170)
                      ..+||.+.|+||+||||++.++........+ . . -.+....+.-.+...-|.+.|.. |...              |.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~-k-v-gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~   80 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY-K-V-GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG   80 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCc-e-e-eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence            4689999999999999999988754322211 1 1 13444555556677777888876 3111              10


Q ss_pred             -----------ccchhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           73 -----------SLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        73 -----------~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                                 ......++.+|++|  +|=-.+  ++. ...+...+......+.|++....+.+.
T Consensus        81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGp--MElks~~f~~~ve~vl~~~kpliatlHrrsr  142 (179)
T COG1618          81 VNVEGLEEIAIPALRRALEEADVII--IDEIGP--MELKSKKFREAVEEVLKSGKPLIATLHRRSR  142 (179)
T ss_pred             eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccc--hhhccHHHHHHHHHHhcCCCcEEEEEecccC
Confidence                       01122234556554  342222  222 334445555555567887777776653

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.44  E-value=5.5e-07  Score=62.60  Aligned_cols=24  Identities=33%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|++|+|||||+|+|.+..
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~  144 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV  144 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh
Confidence            468899999999999999999754

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=98.39  E-value=2.4e-05  Score=57.70  Aligned_cols=153  Identities=20%  Similarity=0.249  Sum_probs=87.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-----------------CCc----ccceeeeEEEE---EEEEE-CCeEEEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-----------------DNT----YQATIGIDFLS---KTMYL-EDRTVRLQL   62 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~-----------------~~~----~~~~~~~~~~~---~~~~~-~~~~~~~~i   62 (170)
                      ..+-+-++||..+||||||.+|..-..                 +.+    ...|+...+..   ..+.. ++-.+++.+
T Consensus        16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL   95 (492)
T PF09547_consen   16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL   95 (492)
T ss_pred             CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence            357789999999999999999975211                 111    11112111211   12233 466789999


Q ss_pred             EeCCCc--------c-----cc-cccchhh---------------h--cCCcEEEEEEeCC----ChhhHHhH-HHHHHH
Q 030880           63 WDTAGQ--------E-----RF-RSLIPSY---------------I--RDSSVAVVVYDVA----SRQSFLNT-SKWIDE  106 (170)
Q Consensus        63 ~D~~g~--------~-----~~-~~~~~~~---------------~--~~~~~~i~v~d~~----~~~s~~~~-~~~~~~  106 (170)
                      +|+.|.        .     ++ .+-|-.+               +  +..=++++.-|-+    .++.|.+. .+...+
T Consensus        96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E  175 (492)
T PF09547_consen   96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE  175 (492)
T ss_pred             EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence            999871        1     00 0011000               1  1234566666644    23455444 333344


Q ss_pred             HHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC--CCChHHHhhc
Q 030880          107 VRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA--GFNIKVCLML  165 (170)
Q Consensus       107 ~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~  165 (170)
                      +.   ..++|++++.|-.+-.  .....+.+.++...++++++.+++..  ...+..+++.
T Consensus       176 Lk---~igKPFvillNs~~P~--s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~  231 (492)
T PF09547_consen  176 LK---EIGKPFVILLNSTKPY--SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEE  231 (492)
T ss_pred             HH---HhCCCEEEEEeCCCCC--CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHH
Confidence            43   3569999999998853  33355677888889999888777654  3455555443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.37  E-value=8e-06  Score=59.84  Aligned_cols=140  Identities=12%  Similarity=0.090  Sum_probs=69.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEEE---------------EEE-EE-----------CCeEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLS---------------KTM-YL-----------EDRTV   58 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~---------------~~~-~~-----------~~~~~   58 (170)
                      .-.++++|++|+||||++.+|.......   ......+.+.+.               ..+ ..           .-...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~  216 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK  216 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence            3468899999999999999987532110   011111111110               000 00           01235


Q ss_pred             EEEEEeCCCcccccccchh---hhc---CCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCc
Q 030880           59 RLQLWDTAGQERFRSLIPS---YIR---DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEK  129 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~---~~~---~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~  129 (170)
                      .+.++||+|....+.....   .+.   ...-.++|.+++.. +...+....+.........  .-+-=++.||.|....
T Consensus       217 DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~  296 (374)
T PRK14722        217 HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN  296 (374)
T ss_pred             CEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence            7899999996544332211   122   23456888888754 3444433323332211100  0122455699997543


Q ss_pred             cccCHHHHHHHHhhcCCeEEEEe
Q 030880          130 RQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                          .-.+..++...+.++..++
T Consensus       297 ----~G~~l~~~~~~~lPi~yvt  315 (374)
T PRK14722        297 ----LGGVLDTVIRYKLPVHYVS  315 (374)
T ss_pred             ----ccHHHHHHHHHCcCeEEEe
Confidence                2345555555565544443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.36  E-value=4.9e-06  Score=61.90  Aligned_cols=141  Identities=18%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC------CC----CCcccc-----------eeeeEEEEEEEEE-------------C
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD------KF----DNTYQA-----------TIGIDFLSKTMYL-------------E   54 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~-------------~   54 (170)
                      +.-|+++|++|+||||++.+|...      +.    .+.+.+           -...+++......             .
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~  179 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK  179 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence            456899999999999999988631      10    011100           0111111110000             0


Q ss_pred             CeEEEEEEEeCCCcccccccchhh------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ...+.+.|+||+|...........      ..+.+-+++|.|+...+.-.+   ....+....   .+.-++.||.|...
T Consensus       180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~~---~~~g~IlTKlD~~a  253 (429)
T TIGR01425       180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDSV---DVGSVIITKLDGHA  253 (429)
T ss_pred             hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhcc---CCcEEEEECccCCC
Confidence            125689999999955433211111      225678999999875532222   222222211   34567789999743


Q ss_pred             ccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      ..    -.+.......+.++..++  +|+.+++
T Consensus       254 rg----G~aLs~~~~t~~PI~fig--~Ge~v~D  280 (429)
T TIGR01425       254 KG----GGALSAVAATKSPIIFIG--TGEHIDD  280 (429)
T ss_pred             Cc----cHHhhhHHHHCCCeEEEc--CCCChhh
Confidence            22    223444445555544443  3444444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.34  E-value=1.3e-06  Score=62.17  Aligned_cols=95  Identities=22%  Similarity=0.176  Sum_probs=60.6

Q ss_pred             CCCcccc-cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh
Q 030880           65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE  143 (170)
Q Consensus        65 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  143 (170)
                      .|||..- .......++.+|++++|+|+..+.+.+.  .++....    .+.|+++|.||+|+.+...  ......+.++
T Consensus         7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~   78 (287)
T PRK09563          7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE   78 (287)
T ss_pred             cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence            4565421 2234555789999999999987644322  1122221    2588999999999854311  1122222234


Q ss_pred             cCCeEEEEecCCCCChHHHhhcCC
Q 030880          144 LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       144 ~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .+..++.+|++++.|++++.+.+.
T Consensus        79 ~~~~vi~vSa~~~~gi~~L~~~l~  102 (287)
T PRK09563         79 QGIKALAINAKKGQGVKKILKAAK  102 (287)
T ss_pred             cCCeEEEEECCCcccHHHHHHHHH
Confidence            467889999999999999887654

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.34  E-value=4e-06  Score=57.71  Aligned_cols=84  Identities=17%  Similarity=0.227  Sum_probs=52.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-------ccccchhhhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-------FRSLIPSYIRD   81 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-------~~~~~~~~~~~   81 (170)
                      .-+|-++|-|++||||++..+.+...+.....+++.....-  ...-.+-++++.|.||.-+       .........+-
T Consensus        59 ~a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG--~~~y~gaKiqlldlpgiiegakdgkgrg~qviavart  136 (358)
T KOG1487|consen   59 DARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPG--VIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVART  136 (358)
T ss_pred             ceeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecc--eEeccccceeeecCcchhcccccCCCCccEEEEEeec
Confidence            34889999999999999999987654322111111111111  1122345899999998322       11233444678


Q ss_pred             CcEEEEEEeCCCh
Q 030880           82 SSVAVVVYDVASR   94 (170)
Q Consensus        82 ~~~~i~v~d~~~~   94 (170)
                      |+.+++|.|+..|
T Consensus       137 cnli~~vld~~kp  149 (358)
T KOG1487|consen  137 CNLIFIVLDVLKP  149 (358)
T ss_pred             ccEEEEEeeccCc
Confidence            9999999998754

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.33  E-value=3.5e-06  Score=55.17  Aligned_cols=134  Identities=17%  Similarity=0.247  Sum_probs=67.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeC-CCccc-------------------
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT-AGQER-------------------   70 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~g~~~-------------------   70 (170)
                      ||++.|++|+|||||+.+++...... ..+..  .+++......+...-+.+.|. .|.+.                   
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l~~~-~~~v~--Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~   77 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEELKKK-GLPVG--GFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVD   77 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHHHHT-CGGEE--EEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-
T ss_pred             CEEEECcCCCCHHHHHHHHHHHhhcc-CCccc--eEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEc
Confidence            68999999999999999988543211 11222  233333334455555666666 33110                   


Q ss_pred             ---cccc----chhhhcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCC-CCCCccccCHHHHHHHH
Q 030880           71 ---FRSL----IPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT-DLVEKRQVSIEEGEAKS  141 (170)
Q Consensus        71 ---~~~~----~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~-D~~~~~~~~~~~~~~~~  141 (170)
                         +...    ....+..++  ++++|=-.+  ++. ...|.+.+......++|++.+.-+. +.        ...+.+.
T Consensus        78 ~e~fe~~~~~~L~~~~~~~~--liviDEIG~--mEl~~~~F~~~v~~~l~s~~~vi~vv~~~~~~--------~~l~~i~  145 (168)
T PF03266_consen   78 LESFEEIGLPALRNALSSSD--LIVIDEIGK--MELKSPGFREAVEKLLDSNKPVIGVVHKRSDN--------PFLEEIK  145 (168)
T ss_dssp             HHHHHCCCCCCCHHHHHCCH--EEEE---ST--TCCC-CHHHHHHHHHHCTTSEEEEE--SS--S--------CCHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCC--EEEEeccch--hhhcCHHHHHHHHHHHcCCCcEEEEEecCCCc--------HHHHHHH
Confidence               1111    111123445  566662222  111 2344555555555678888777666 32        2356667


Q ss_pred             hhcCCeEEEEecCCCCCh
Q 030880          142 RELNVMFIETSAKAGFNI  159 (170)
Q Consensus       142 ~~~~~~~~~~s~~~~~~i  159 (170)
                      ...++.++.++..+...+
T Consensus       146 ~~~~~~i~~vt~~NRd~l  163 (168)
T PF03266_consen  146 RRPDVKIFEVTEENRDAL  163 (168)
T ss_dssp             TTTTSEEEE--TTTCCCH
T ss_pred             hCCCcEEEEeChhHHhhH
Confidence            777888898887766554

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.32  E-value=1.8e-06  Score=63.41  Aligned_cols=55  Identities=24%  Similarity=0.369  Sum_probs=35.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      .++.++|.+|+|||||+|+++....      .....|.++...  ......+   .+.++||||..
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~--~~~~~~~---~~~l~DtPG~~  215 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDL--IEIPLDD---GHSLYDTPGII  215 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeE--EEEEeCC---CCEEEECCCCC
Confidence            4899999999999999999997432      111223333222  2222222   35799999954

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.32  E-value=2e-06  Score=61.52  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -.++++|++|+|||||+|.|.+...
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCcC
Confidence            4588999999999999999997654

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.32  E-value=1e-06  Score=64.02  Aligned_cols=157  Identities=17%  Similarity=0.206  Sum_probs=94.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------CC------------cccceeeeEEEEEEEEEC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------DN------------TYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------~~------------~~~~~~~~~~~~~~~~~~   54 (170)
                      +...++++++|.-..||||+-..++....                   ..            +....-+......  ...
T Consensus        76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA--~FE  153 (501)
T KOG0459|consen   76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRA--YFE  153 (501)
T ss_pred             CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeE--EEE
Confidence            45578999999999999998776653100                   00            0000011111111  112


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCc-
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEK-  129 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~-  129 (170)
                      -...++++.|+||+..|-.....-..++|.-++|.++-..   ..|+.-.+......-.. ..-...|+++||+|-..- 
T Consensus       154 te~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvn  233 (501)
T KOG0459|consen  154 TENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  233 (501)
T ss_pred             ecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccC
Confidence            2335799999999999988888888899999999987432   34555322222222222 233457888899996421 


Q ss_pred             -cccC----HHHHHHHHhhcC------CeEEEEecCCCCChHHHhh
Q 030880          130 -RQVS----IEEGEAKSRELN------VMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus       130 -~~~~----~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~  164 (170)
                       ..--    .+....+.+.+|      ..|+.+|..+|.++++..+
T Consensus       234 Ws~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~  279 (501)
T KOG0459|consen  234 WSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD  279 (501)
T ss_pred             cchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence             1111    233334444333      4799999999999987543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.31  E-value=2e-06  Score=61.26  Aligned_cols=59  Identities=24%  Similarity=0.218  Sum_probs=36.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccce------eeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQAT------IGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      -.++++|++|+|||||+|.|.+..........      ...+.........+.   ..++||||..++
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~  226 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF  226 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence            56899999999999999999976443221110      011222222333322   258999997654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13796 GTPase YqeH; Provisional

Probab=98.30  E-value=1.5e-06  Score=63.93  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=34.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC------CcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD------NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      .++.++|.+|+|||||+|+|+.....      ....|.++.+.  ..+..++.   ..++||||.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~--~~~~l~~~---~~l~DTPGi  220 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK--IEIPLDDG---SFLYDTPGI  220 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee--EEEEcCCC---cEEEECCCc
Confidence            47999999999999999999864311      11222222222  22223222   479999995

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.28  E-value=3.4e-05  Score=55.62  Aligned_cols=97  Identities=29%  Similarity=0.291  Sum_probs=53.7

Q ss_pred             EEEEEEeCCCcccccccchhhh--------cCCcEEEEEEeCCChhhHHh-HHHH-HHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           58 VRLQLWDTAGQERFRSLIPSYI--------RDSSVAVVVYDVASRQSFLN-TSKW-IDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~--------~~~~~~i~v~d~~~~~s~~~-~~~~-~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ....++.+.|.-.-......+.        -..|++|-|+|+.+-..... .... ..++. ..     =+|++||+|+.
T Consensus        85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia-~A-----D~ivlNK~Dlv  158 (323)
T COG0523          85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA-FA-----DVIVLNKTDLV  158 (323)
T ss_pred             CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH-hC-----cEEEEecccCC
Confidence            4566788887443322222221        24688999999875432221 2222 22222 22     17888999998


Q ss_pred             CccccCHHHHHHHHhhcC--CeEEEEecCCCCChHHHh
Q 030880          128 EKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~  163 (170)
                      ++..  .+..+...+.++  ++++.++. .+.+..+++
T Consensus       159 ~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll  193 (323)
T COG0523         159 DAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELL  193 (323)
T ss_pred             CHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhh
Confidence            7764  344555555554  57777776 444444444

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=3.3e-06  Score=64.28  Aligned_cols=118  Identities=21%  Similarity=0.269  Sum_probs=77.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-------c---------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-------T---------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      -+|-+.-.-.+||||+-++.+......       .         .....+++....-....-..++++++|||||-.|.-
T Consensus        40 RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT~  119 (721)
T KOG0465|consen   40 RNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFTF  119 (721)
T ss_pred             cccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEEE
Confidence            467778888999999999887531100       0         001112222222222222367899999999999988


Q ss_pred             cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      ...+.++-.|++|++.|....-.-+....| .++.+   .++|.+..+||+|...+..
T Consensus       120 EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~r---y~vP~i~FiNKmDRmGa~~  173 (721)
T KOG0465|consen  120 EVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKR---YNVPRICFINKMDRMGASP  173 (721)
T ss_pred             EehhhhhhccCeEEEEEcccceehhhHHHH-HHHHh---cCCCeEEEEehhhhcCCCh
Confidence            888899999999999997755222223333 22222   4699999999999876643

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.26  E-value=9.1e-06  Score=53.53  Aligned_cols=82  Identities=13%  Similarity=0.102  Sum_probs=44.6

Q ss_pred             EEEEEEEeCCCcccccccc----hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           57 TVRLQLWDTAGQERFRSLI----PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      ...+.++|++|...+....    ..+  ....+.+++|+|......   ...+...+.+...   ..-++.||.|.....
T Consensus        82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~  155 (173)
T cd03115          82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG  155 (173)
T ss_pred             CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc
Confidence            4568899999964322111    111  134899999999865432   2233344433322   245666999975432


Q ss_pred             ccCHHHHHHHHhhcCCeE
Q 030880          131 QVSIEEGEAKSRELNVMF  148 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~  148 (170)
                          ..+...+...++++
T Consensus       156 ----g~~~~~~~~~~~p~  169 (173)
T cd03115         156 ----GAALSIRAVTGKPI  169 (173)
T ss_pred             ----chhhhhHHHHCcCe
Confidence                22233555555544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.24  E-value=3.8e-05  Score=55.43  Aligned_cols=95  Identities=9%  Similarity=0.119  Sum_probs=49.9

Q ss_pred             EEEEEEeCCCcccccccchhhhc--------CCcEEEEEEeCCChhhHH-hHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIR--------DSSVAVVVYDVASRQSFL-NTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~--------~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ....++++.|-.........++.        ..++++.|+|+.+-.... .......++....      +|++||+|+.+
T Consensus        91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD------~IvlnK~Dl~~  164 (318)
T PRK11537         91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD------RILLTKTDVAG  164 (318)
T ss_pred             CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCC------EEEEeccccCC
Confidence            45678888885544333333221        357899999987542221 1111122232222      77889999876


Q ss_pred             ccccCHHHHHHHHhhcC--CeEEEEecCCCCChHHHh
Q 030880          129 KRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~  163 (170)
                      +.    +......+..+  ++++.++ ........+|
T Consensus       165 ~~----~~~~~~l~~lnp~a~i~~~~-~~~v~~~~l~  196 (318)
T PRK11537        165 EA----EKLRERLARINARAPVYTVV-HGDIDLSLLF  196 (318)
T ss_pred             HH----HHHHHHHHHhCCCCEEEEec-cCCCCHHHHh
Confidence            42    44555555443  4555443 2233444443

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=98.24  E-value=7.7e-06  Score=42.97  Aligned_cols=45  Identities=16%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             cCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880           80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  125 (170)
                      .-.+++++++|++..  .+.++....+.+++..+ .+.|+++|.||+|
T Consensus        12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D   58 (58)
T PF06858_consen   12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID   58 (58)
T ss_dssp             GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred             hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence            346789999999965  56777888888888887 5899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=98.24  E-value=9.8e-06  Score=51.46  Aligned_cols=106  Identities=15%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC
Q 030880           14 FLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        14 v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~   93 (170)
                      .-|.+|+|||++.-.+...... ......-.+...   ....-.+.+.++|+|+..  .......+..+|.++++.+.+ 
T Consensus         5 ~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~---~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~-   77 (139)
T cd02038           5 TSGKGGVGKTNISANLALALAK-LGKRVLLLDADL---GLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPE-   77 (139)
T ss_pred             EcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCC---CCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCC-
Confidence            4478999999997765432111 111111111110   001111689999999743  344456789999999999976 


Q ss_pred             hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           94 RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        94 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ..++..+...++.+.... ...++.++.|+.+..
T Consensus        78 ~~s~~~~~~~l~~l~~~~-~~~~~~lVvN~~~~~  110 (139)
T cd02038          78 PTSITDAYALIKKLAKQL-RVLNFRVVVNRAESP  110 (139)
T ss_pred             hhHHHHHHHHHHHHHHhc-CCCCEEEEEeCCCCH
Confidence            455555555555554432 345677889999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.23  E-value=1.9e-05  Score=53.07  Aligned_cols=89  Identities=15%  Similarity=0.084  Sum_probs=49.3

Q ss_pred             EEEEEEeCCCcccccccc----hhh--hcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           58 VRLQLWDTAGQERFRSLI----PSY--IRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      +.+.++||+|........    ..+  ....+-+++|.+++.... .+.....    ....  +.. =++.||.|.... 
T Consensus        84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~----~~~~--~~~-~lIlTKlDet~~-  155 (196)
T PF00448_consen   84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAF----YEAF--GID-GLILTKLDETAR-  155 (196)
T ss_dssp             SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHH----HHHS--STC-EEEEESTTSSST-
T ss_pred             CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHH----hhcc--cCc-eEEEEeecCCCC-
Confidence            569999999955443221    111  125778899999876532 3222222    2222  122 345799997543 


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880          131 QVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                         .-.+..++...+.++-.++  +|+++
T Consensus       156 ---~G~~l~~~~~~~~Pi~~it--~Gq~V  179 (196)
T PF00448_consen  156 ---LGALLSLAYESGLPISYIT--TGQRV  179 (196)
T ss_dssp             ---THHHHHHHHHHTSEEEEEE--SSSST
T ss_pred             ---cccceeHHHHhCCCeEEEE--CCCCh
Confidence               2446666777777665554  35554

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.23  E-value=2.2e-06  Score=64.07  Aligned_cols=142  Identities=17%  Similarity=0.150  Sum_probs=74.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC----------CCcccce-----------eeeEEEEEEEEE-----------CC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF----------DNTYQAT-----------IGIDFLSKTMYL-----------ED   55 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~----------~~~~~~~-----------~~~~~~~~~~~~-----------~~   55 (170)
                      .+..++++|++|+||||++..|.....          .+.+.+.           .+..........           ..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~  173 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF  173 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence            457899999999999999987753110          0111110           011111100000           00


Q ss_pred             eEEEEEEEeCCCcccccccc------hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           56 RTVRLQLWDTAGQERFRSLI------PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      ....+.++||+|........      ......+|.+++|.|++...   +.......+....  + ..-+|.||.|....
T Consensus       174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a~  247 (437)
T PRK00771        174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTAK  247 (437)
T ss_pred             hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCCc
Confidence            12378999999965433211      11133688999999987652   2222222222211  1 23566799996432


Q ss_pred             cccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .    -.+.......+.++..++.  |+.+++
T Consensus       248 ~----G~~ls~~~~~~~Pi~fig~--Ge~v~D  273 (437)
T PRK00771        248 G----GGALSAVAETGAPIKFIGT--GEKIDD  273 (437)
T ss_pred             c----cHHHHHHHHHCcCEEEEec--CCCccc
Confidence            2    3455556666766555543  555543

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.21  E-value=8.1e-06  Score=52.39  Aligned_cols=58  Identities=16%  Similarity=0.109  Sum_probs=36.7

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  125 (170)
                      .+.+.++||+|...   ....++..+|-++++....-.+.+.-.+.  ..+ ..+     =++++||.|
T Consensus        91 ~~D~iiIDtaG~~~---~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~-~~~-----~~~~~~k~~  148 (148)
T cd03114          91 GFDVIIVETVGVGQ---SEVDIASMADTTVVVMAPGAGDDIQAIKA--GIM-EIA-----DIVVVNKAD  148 (148)
T ss_pred             CCCEEEEECCccCh---hhhhHHHhCCEEEEEECCCchhHHHHhhh--hHh-hhc-----CEEEEeCCC
Confidence            46889999988542   23457889999999988763333322222  222 222     277789987

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00959 ffh signal recognition particle protein

Probab=98.21  E-value=1.4e-05  Score=59.75  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=52.3

Q ss_pred             EEEEEEEeCCCcccccccchhh------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           57 TVRLQLWDTAGQERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      .+.+.++||+|...........      .-+.+.+++|.|+...   ++.......+....  ++ .-++.||.|.....
T Consensus       182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v--~i-~giIlTKlD~~~~~  255 (428)
T TIGR00959       182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL--GL-TGVVLTKLDGDARG  255 (428)
T ss_pred             CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC--CC-CEEEEeCccCcccc
Confidence            4579999999954332211111      2357889999998754   23333334443222  12 35557999964322


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                          -.+...+...++++..++.  |+.+++
T Consensus       256 ----G~~lsi~~~~~~PI~fi~~--Ge~i~d  280 (428)
T TIGR00959       256 ----GAALSVRSVTGKPIKFIGV--GEKIDD  280 (428)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC--CCChhh
Confidence                2366666677776655544  454544

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.18  E-value=1.1e-05  Score=53.39  Aligned_cols=83  Identities=24%  Similarity=0.172  Sum_probs=43.1

Q ss_pred             EEEEEEEeCCCccccccc--chhh---hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           57 TVRLQLWDTAGQERFRSL--IPSY---IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~--~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      .....++.+.|-.....+  ....   .-..+.+|.++|+.+-.........+..-.....     +++.||+|+.+.. 
T Consensus        84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD-----vIvlnK~D~~~~~-  157 (178)
T PF02492_consen   84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD-----VIVLNKIDLVSDE-  157 (178)
T ss_dssp             C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S-----EEEEE-GGGHHHH-
T ss_pred             CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchhcC-----EEEEeccccCChh-
Confidence            356778888884443333  0000   2256889999998765333344333332222222     7888999997654 


Q ss_pred             cCHHHHHHHHhhcC
Q 030880          132 VSIEEGEAKSRELN  145 (170)
Q Consensus       132 ~~~~~~~~~~~~~~  145 (170)
                      ...+..++..++.+
T Consensus       158 ~~i~~~~~~ir~ln  171 (178)
T PF02492_consen  158 QKIERVREMIRELN  171 (178)
T ss_dssp             --HHHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHC
Confidence            12244555555443

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK13695 putative NTPase; Provisional

Probab=98.17  E-value=6.7e-05  Score=49.48  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +++.+.|++|+|||||+..+.+
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~   22 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAE   22 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998654

>PRK10867 signal recognition particle protein; Provisional

Probab=98.14  E-value=2.3e-05  Score=58.62  Aligned_cols=93  Identities=11%  Similarity=0.035  Sum_probs=50.2

Q ss_pred             EEEEEEEeCCCccccccc-c---hhh--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           57 TVRLQLWDTAGQERFRSL-I---PSY--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~-~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      .+.+.++||+|....... .   ...  .-..+.+++|.|....+   +.......+....  ++ .-++.||.|.....
T Consensus       183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq---~av~~a~~F~~~~--~i-~giIlTKlD~~~rg  256 (433)
T PRK10867        183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GL-TGVILTKLDGDARG  256 (433)
T ss_pred             CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHH---HHHHHHHHHHhhC--CC-CEEEEeCccCcccc
Confidence            467999999995432211 1   111  12577889999986542   2323333333221  12 24566999964322


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                          -.+.......++++..++.  |+.+++
T Consensus       257 ----G~alsi~~~~~~PI~fig~--Ge~v~D  281 (433)
T PRK10867        257 ----GAALSIRAVTGKPIKFIGT--GEKLDD  281 (433)
T ss_pred             ----cHHHHHHHHHCcCEEEEeC--CCcccc
Confidence                2255566666776655544  455443

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=5.9e-06  Score=68.01  Aligned_cols=116  Identities=19%  Similarity=0.129  Sum_probs=65.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCccc--------ccccchhh----
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQER--------FRSLIPSY----   78 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~--------~~~~~~~~----   78 (170)
                      -+|+|++|+||||++..--.+-.........+..... +..++ .-.-.-.++||.|...        -...|..+    
T Consensus       128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL  206 (1188)
T COG3523         128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL  206 (1188)
T ss_pred             eEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence            4799999999999986432211100000000000000 11110 1112466889988221        12234332    


Q ss_pred             -----hcCCcEEEEEEeCCCh------h--h-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           79 -----IRDSSVAVVVYDVASR------Q--S-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        79 -----~~~~~~~i~v~d~~~~------~--s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                           .+-.|++|++.|+.+-      +  . ...+...+.++........|+.|++||.|+.+
T Consensus       207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~  270 (1188)
T COG3523         207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP  270 (1188)
T ss_pred             HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence                 2358999999998742      1  1 22356667777777778899999999999965

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.12  E-value=7.1e-05  Score=57.12  Aligned_cols=139  Identities=15%  Similarity=0.147  Sum_probs=70.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEEE---------------EEEEE------------CCeEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLS---------------KTMYL------------EDRTV   58 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~---------------~~~~~------------~~~~~   58 (170)
                      .-.++++|++|+||||++..|.......   ........+.+.               ..+..            ....+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~  429 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY  429 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence            3478899999999999998886521110   000001111100               00000            01346


Q ss_pred             EEEEEeCCCcccccccchh---hhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC
Q 030880           59 RLQLWDTAGQERFRSLIPS---YIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~---~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (170)
                      .+.|+||+|..........   .+.  .....++|++.+.  +...+...+..+...    .+.-+|+||.|....    
T Consensus       430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~~----~~~gvILTKlDEt~~----  499 (559)
T PRK12727        430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAHA----KPQGVVLTKLDETGR----  499 (559)
T ss_pred             CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHhh----CCeEEEEecCcCccc----
Confidence            8999999995533221110   011  1223566666653  233333333333321    345678899997432    


Q ss_pred             HHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880          134 IEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      ...+.......+.++..++  +|+.|
T Consensus       500 lG~aLsv~~~~~LPI~yvt--~GQ~V  523 (559)
T PRK12727        500 FGSALSVVVDHQMPITWVT--DGQRV  523 (559)
T ss_pred             hhHHHHHHHHhCCCEEEEe--CCCCc
Confidence            3556666666676655444  34444

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=1.8e-05  Score=59.44  Aligned_cols=127  Identities=20%  Similarity=0.216  Sum_probs=76.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC------------CCC----cccceeeeEEEEEEE--------------EECCe
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDK------------FDN----TYQATIGIDFLSKTM--------------YLEDR   56 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~------------~~~----~~~~~~~~~~~~~~~--------------~~~~~   56 (170)
                      ..--++.++.....|||||-..|....            +.+    +.....++.......              ..++.
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~   96 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN   96 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence            344578889999999999999887531            111    111111111111100              11345


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC-CccccCHH
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-EKRQVSIE  135 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~  135 (170)
                      .+.++++|.||+-.|.+.....++-.|+.++|+|+-+.--.+.-..+...+..    .+.-++++||+|.. -+-+++.+
T Consensus        97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E----RIkPvlv~NK~DRAlLELq~~~E  172 (842)
T KOG0469|consen   97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE----RIKPVLVMNKMDRALLELQLSQE  172 (842)
T ss_pred             ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh----hccceEEeehhhHHHHhhcCCHH
Confidence            68899999999999999999999999999999998755222111112222222    23336678999963 12334444


Q ss_pred             HH
Q 030880          136 EG  137 (170)
Q Consensus       136 ~~  137 (170)
                      +.
T Consensus       173 eL  174 (842)
T KOG0469|consen  173 EL  174 (842)
T ss_pred             HH
Confidence            43

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=98.10  E-value=3.5e-05  Score=46.30  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=51.2

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           12 LVFLG-DQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        12 i~v~G-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      +.+.| ..|+||||+...+...... ...+..-.+..        ..+.+.++|+|+...  ......+..+|.++++.+
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d--------~~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~   70 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLD--------PQYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQ   70 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCC--------CCCCEEEEeCcCCCC--HHHHHHHHHCCEEEEecc
Confidence            45666 6689999998776543221 11122222211        116799999998543  233466788999999998


Q ss_pred             CCChhhHHhHHHHHH
Q 030880           91 VASRQSFLNTSKWID  105 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~  105 (170)
                      .+ ..++..+.++++
T Consensus        71 ~~-~~s~~~~~~~~~   84 (104)
T cd02042          71 PS-PLDLDGLEKLLE   84 (104)
T ss_pred             CC-HHHHHHHHHHHH
Confidence            75 556666666655

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=98.06  E-value=0.00014  Score=49.56  Aligned_cols=77  Identities=30%  Similarity=0.289  Sum_probs=44.4

Q ss_pred             EEEEEeC-CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880           59 RLQLWDT-AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        59 ~~~i~D~-~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (170)
                      .+.++|| +|.+.+   -+...+++|.+|+|.|++. +|+...++ +.++.+..+ -.++.+|+||.|-.      ....
T Consensus       135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~taer-i~~L~~elg-~k~i~~V~NKv~e~------e~~~  202 (255)
T COG3640         135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTAER-IKELAEELG-IKRIFVVLNKVDEE------EELL  202 (255)
T ss_pred             cEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHHHH-HHHHHHHhC-CceEEEEEeeccch------hHHH
Confidence            4556665 333322   2344668999999999873 44444333 233333321 27889999999953      2334


Q ss_pred             HHHHhhcCCe
Q 030880          138 EAKSRELNVM  147 (170)
Q Consensus       138 ~~~~~~~~~~  147 (170)
                      ...+...+..
T Consensus       203 ~~~~~~~~~~  212 (255)
T COG3640         203 RELAEELGLE  212 (255)
T ss_pred             HhhhhccCCe
Confidence            4445555543

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.05  E-value=3.5e-05  Score=57.42  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.++++|++|+||||++..|.+
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~  213 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAA  213 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=3.8e-05  Score=56.56  Aligned_cols=134  Identities=16%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC----------CCccc-----------ceeeeEEEEEEE------EE---C-CeE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF----------DNTYQ-----------ATIGIDFLSKTM------YL---E-DRT   57 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~----------~~~~~-----------~~~~~~~~~~~~------~~---~-~~~   57 (170)
                      +..|+++|++|+||||++..|.....          .+.+.           ...+........      .+   . ...
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            46799999999999999998864211          00000           000111110000      00   0 113


Q ss_pred             EEEEEEeCCCccccccc----chhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           58 VRLQLWDTAGQERFRSL----IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      +.+.++||+|.......    ....+  ...+-+++|.|++...  ..+...+..+..   .++ -=+++||.|....  
T Consensus       321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~---~~i-dglI~TKLDET~k--  392 (436)
T PRK11889        321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD---IHI-DGIVFTKFDETAS--  392 (436)
T ss_pred             CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC---CCC-CEEEEEcccCCCC--
Confidence            57899999996432221    12222  2356778888875331  222333333322   112 2455699997543  


Q ss_pred             cCHHHHHHHHhhcCCeEEEEe
Q 030880          132 VSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s  152 (170)
                        .-.+...+...+.++..++
T Consensus       393 --~G~iLni~~~~~lPIsyit  411 (436)
T PRK11889        393 --SGELLKIPAVSSAPIVLMT  411 (436)
T ss_pred             --ccHHHHHHHHHCcCEEEEe
Confidence              2445566666666554443

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.97  E-value=5.9e-05  Score=56.02  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..-++++|++|+||||++.+|..
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~  245 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAA  245 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34588999999999999998874

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=7.9e-05  Score=54.68  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             EEEEEEEeCCCcccccccc----hhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           57 TVRLQLWDTAGQERFRSLI----PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~----~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      .+.+.++||+|........    ..+..  ..+.+++|.+++  ....++...+..+.   .. .+--++.||.|.... 
T Consensus       285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~f~---~l-~i~glI~TKLDET~~-  357 (407)
T PRK12726        285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPKLA---EI-PIDGFIITKMDETTR-  357 (407)
T ss_pred             CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHhcC---cC-CCCEEEEEcccCCCC-
Confidence            4689999999975433221    22222  345556666653  22333333333221   11 223556799997433 


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                         .-.+...+...+.++..++  +|++|.+
T Consensus       358 ---~G~~Lsv~~~tglPIsylt--~GQ~Vpd  383 (407)
T PRK12726        358 ---IGDLYTVMQETNLPVLYMT--DGQNITE  383 (407)
T ss_pred             ---ccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence               3446666677777655444  3444443

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.96  E-value=9.3e-05  Score=44.70  Aligned_cols=102  Identities=15%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             EEE-cCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeC
Q 030880           13 VFL-GDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDV   91 (170)
Q Consensus        13 ~v~-G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   91 (170)
                      +++ +..|+||||+...|-............-.+....     . ...+.++|+|+...  ......+..+|.++++.+.
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~-----~-~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~   74 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQ-----F-GDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQ   74 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCC-----C-CCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecC
Confidence            444 5678999998776654322110111111111111     1 11789999997543  3344567899999999886


Q ss_pred             CChhhHHhHHHHHHHHHHhcCC-CCeEEEEEeC
Q 030880           92 ASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNK  123 (170)
Q Consensus        92 ~~~~s~~~~~~~~~~~~~~~~~-~~p~ivv~nK  123 (170)
                      + ..++..+..+++.+.....+ ...+.+|+|+
T Consensus        75 ~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          75 D-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             C-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            5 55666777777766655433 4456677775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.95  E-value=9.6e-05  Score=55.46  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=48.9

Q ss_pred             EEEEEEEeCCCcccccc----cchhhhc---CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           57 TVRLQLWDTAGQERFRS----LIPSYIR---DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~----~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      .+.+.++||+|......    ....++.   ...-+.+|.+++..  ...+...+..+..   .+. --++.||.|....
T Consensus       299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~~~-~~vI~TKlDet~~  372 (424)
T PRK05703        299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---LPL-DGLIFTKLDETSS  372 (424)
T ss_pred             CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---CCC-CEEEEeccccccc
Confidence            36899999999654321    1222333   23456777887643  1222222222221   111 2466799997433


Q ss_pred             cccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880          130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                          ...+.......+.++..++  +|++|
T Consensus       373 ----~G~i~~~~~~~~lPv~yit--~Gq~V  396 (424)
T PRK05703        373 ----LGSILSLLIESGLPISYLT--NGQRV  396 (424)
T ss_pred             ----ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence                2356677777777655554  34554

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=4e-05  Score=55.74  Aligned_cols=98  Identities=18%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc---------------------ceeeeEEEEEEEEE-------------C
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ---------------------ATIGIDFLSKTMYL-------------E   54 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~---------------------~~~~~~~~~~~~~~-------------~   54 (170)
                      +--|+++|..|+||||.+.+|........+.                     .-...+++......             .
T Consensus       101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fK  180 (483)
T KOG0780|consen  101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFK  180 (483)
T ss_pred             CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHH
Confidence            3458899999999999988776421100000                     00112222221111             2


Q ss_pred             CeEEEEEEEeCCCcccccc-cchhh-----hcCCcEEEEEEeCCChhhHHhHHHHHHH
Q 030880           55 DRTVRLQLWDTAGQERFRS-LIPSY-----IRDSSVAVVVYDVASRQSFLNTSKWIDE  106 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~-~~~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~  106 (170)
                      .+++.+.|.||+|.+.... +....     .-+.|-+|+|.|++-.+.-+...+-+++
T Consensus       181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~  238 (483)
T KOG0780|consen  181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKE  238 (483)
T ss_pred             hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHH
Confidence            4568999999999554322 21111     2368999999999977665554443333

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.89  E-value=0.00023  Score=41.75  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-chhhhcCCcEEEEEEe
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYD   90 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d   90 (170)
                      +++.|..|+||||+...+........ ....-.+             .+.++|+++....... .......+|.++++.+
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~v~~~~-------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~   67 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALAKRG-KRVLLID-------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT   67 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEC-------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence            57889999999999987765432211 1111111             7889999975432211 1455678999999998


Q ss_pred             CCCh
Q 030880           91 VASR   94 (170)
Q Consensus        91 ~~~~   94 (170)
                      .+..
T Consensus        68 ~~~~   71 (99)
T cd01983          68 PEAL   71 (99)
T ss_pred             Cchh
Confidence            7633

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=97.88  E-value=0.00011  Score=54.04  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=69.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEE-----------------EEE----------CCeEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT-----------------MYL----------EDRTV   58 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~-----------------~~~----------~~~~~   58 (170)
                      .-.++++||+|+||||-+-+|-.....   .......+.|.+..-                 +..          .-..+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            456899999999999999888765431   111222222332210                 000          01345


Q ss_pred             EEEEEeCCCcccccccc----hhhhcC--CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           59 RLQLWDTAGQERFRSLI----PSYIRD--SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~----~~~~~~--~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      .+.++||.|...++...    ..++..  ..-+.+|++++..  .+.++..+..++..   +.. -++.||.|....   
T Consensus       283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~---~i~-~~I~TKlDET~s---  353 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF---PID-GLIFTKLDETTS---  353 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC---Ccc-eeEEEcccccCc---
Confidence            89999999977655432    233332  3334566676644  33444444444321   222 344599996432   


Q ss_pred             CHHHHHHHHhhcCCeE
Q 030880          133 SIEEGEAKSRELNVMF  148 (170)
Q Consensus       133 ~~~~~~~~~~~~~~~~  148 (170)
                       .-.....+.+.+.++
T Consensus       354 -~G~~~s~~~e~~~PV  368 (407)
T COG1419         354 -LGNLFSLMYETRLPV  368 (407)
T ss_pred             -hhHHHHHHHHhCCCe
Confidence             344555555555543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.85  E-value=7.1e-05  Score=46.95  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      --+++.|+.|+|||||++.+.....
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3588999999999999999987643

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK08118 topology modulation protein; Reviewed

Probab=97.85  E-value=1.5e-05  Score=52.27  Aligned_cols=23  Identities=17%  Similarity=0.431  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+|+|+|++|||||||.+.|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999998864

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.84  E-value=1.6e-05  Score=49.02  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .|+|.|++||||||+.+.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999764

...

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.84  E-value=1.5e-05  Score=52.65  Aligned_cols=23  Identities=17%  Similarity=0.517  Sum_probs=21.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .||+++|+||+||||+..+|...
T Consensus         1 ~riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           1 MRILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999876

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=0.0002  Score=57.10  Aligned_cols=140  Identities=16%  Similarity=0.126  Sum_probs=70.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccceeeeEEEEE---------------EE-EE-----------CCeEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFLSK---------------TM-YL-----------EDRTVR   59 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~---------------~~-~~-----------~~~~~~   59 (170)
                      --++++|+.|+||||++.+|........   .....+.+.+..               .+ ..           ....+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D  265 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH  265 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence            3578999999999999998875321100   000111111100               00 00           012347


Q ss_pred             EEEEeCCCccccccc----chhh--hcCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           60 LQLWDTAGQERFRSL----IPSY--IRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        60 ~~i~D~~g~~~~~~~----~~~~--~~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      +.++||+|.......    ....  ....+-.++|.|++.. +.+.++...+..   ....+ +-=+|+||.|....   
T Consensus       266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~---~~~~~-i~glIlTKLDEt~~---  338 (767)
T PRK14723        266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRH---GAGED-VDGCIITKLDEATH---  338 (767)
T ss_pred             EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhh---cccCC-CCEEEEeccCCCCC---
Confidence            899999994322211    1111  1235567888888743 334433332222   11111 22455799997543   


Q ss_pred             CHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880          133 SIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                       .-.+..+....++++..++  +|++|
T Consensus       339 -~G~iL~i~~~~~lPI~yit--~GQ~V  362 (767)
T PRK14723        339 -LGPALDTVIRHRLPVHYVS--TGQKV  362 (767)
T ss_pred             -ccHHHHHHHHHCCCeEEEe--cCCCC
Confidence             2345555666666555444  35555

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.82  E-value=2.5e-05  Score=42.07  Aligned_cols=21  Identities=14%  Similarity=0.325  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..++.|+.|+|||||+..+..
T Consensus        25 ~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999998764

>PRK07261 topology modulation protein; Provisional

Probab=97.81  E-value=1.8e-05  Score=52.02  Aligned_cols=23  Identities=17%  Similarity=0.431  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+|+++|++|+|||||.+.+...
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999998754

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.79  E-value=0.00021  Score=45.07  Aligned_cols=26  Identities=23%  Similarity=0.431  Sum_probs=22.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      .-.+++.|++|+|||+|++.+.....
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            45689999999999999999987543

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.79  E-value=2.1e-05  Score=50.02  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |+++|++|||||||++.+..
T Consensus         2 ii~~G~pgsGKSt~a~~l~~   21 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAK   21 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68899999999999999974

...

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=97.79  E-value=3.4e-05  Score=51.68  Aligned_cols=24  Identities=17%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+-.+++||.||||||+.+.+..
T Consensus         2 m~ya~lV~GpAgSGKSTyC~~~~~   25 (273)
T KOG1534|consen    2 MRYAQLVMGPAGSGKSTYCSSMYE   25 (273)
T ss_pred             CceeEEEEccCCCCcchHHHHHHH
Confidence            356789999999999999998864

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=97.79  E-value=0.00036  Score=51.01  Aligned_cols=21  Identities=24%  Similarity=0.444  Sum_probs=18.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++.|--|+|||||+++++..
T Consensus         7 ~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         7 TIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             EEEEECCCCCHHHHHHHHHhc
Confidence            566799999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=97.78  E-value=7e-05  Score=52.96  Aligned_cols=60  Identities=20%  Similarity=0.321  Sum_probs=37.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ..+++++|+|-|++|||||+|.+.....      .....|..+...... +.+.+.. .+.++||||-
T Consensus       141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp-~vy~iDTPGi  206 (335)
T KOG2485|consen  141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRP-PVYLIDTPGI  206 (335)
T ss_pred             CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCC-ceEEecCCCc
Confidence            4678999999999999999998875322      111223333222221 2333333 5889999993

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.76  E-value=0.00018  Score=54.57  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      --++++|++|+||||++.+|..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~  278 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAA  278 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHH
Confidence            3588999999999999998875

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=97.74  E-value=0.0012  Score=43.08  Aligned_cols=137  Identities=7%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      .++......|+++|..+.++..|.+.+......        ........  ..  ..     .|.  +    ....=...
T Consensus         9 klp~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l~Vh~a--~s--LP-----Lp~--e----~~~lRprI   65 (176)
T PF11111_consen    9 KLPELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKLKVHLA--KS--LP-----LPS--E----NNNLRPRI   65 (176)
T ss_pred             cCCCcceeEEEEecccHHHHHHHHHHHHhhccc--------eeEEEEEe--cc--CC-----Ccc--c----ccCCCcee
Confidence            345556778999999999999999999852211        01101000  00  00     010  0    11112368


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      |.++|++|.+...|+..++.-+..+...+-. -.++++++.....+...+...+..+++..++++++.+.-.+.++...+
T Consensus        66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl-GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~l  144 (176)
T PF11111_consen   66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL-GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSL  144 (176)
T ss_pred             EEEEEEEecCCcccHHHHHHHHhhCChhhhc-cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHH
Confidence            9999999999999999998888777554433 335666677766666778899999999999999999888887776544


Q ss_pred             h
Q 030880          163 L  163 (170)
Q Consensus       163 ~  163 (170)
                      -
T Consensus       145 A  145 (176)
T PF11111_consen  145 A  145 (176)
T ss_pred             H
Confidence            3

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.74  E-value=0.00014  Score=46.15  Aligned_cols=61  Identities=11%  Similarity=0.083  Sum_probs=35.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      --|++-|+-|+|||||.+.+..+-.........+++...........-+.+.++-....++
T Consensus        26 ~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~ee   86 (149)
T COG0802          26 DVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPEE   86 (149)
T ss_pred             CEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeeeehhhcCCCCcEEEEeeeccCChHH
Confidence            3467789999999999999987655433333333333222211233445666666554443

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.74  E-value=4.3e-05  Score=57.36  Aligned_cols=54  Identities=24%  Similarity=0.311  Sum_probs=38.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .+.|-++|-|++||||+||.|.+++.... ..|.-+..+++  +.+..   .+.+.|+||
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~ls~---~v~LCDCPG  368 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFLSP---SVCLCDCPG  368 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEE--EEcCC---CceecCCCC
Confidence            48899999999999999999999876433 22333323333  33333   577999999

>PRK10646 ADP-binding protein; Provisional

Probab=97.73  E-value=0.00023  Score=45.70  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -|++-|+-|+|||||++.+...-.
T Consensus        30 vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         30 VIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            377889999999999999987544

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=0.0012  Score=49.05  Aligned_cols=139  Identities=13%  Similarity=0.082  Sum_probs=70.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-----Ccccce--------------------eeeEEEEEEEE-------ECCe
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-----NTYQAT--------------------IGIDFLSKTMY-------LEDR   56 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~-----~~~~~~--------------------~~~~~~~~~~~-------~~~~   56 (170)
                      +-.++++|++|+||||.+.++......     ......                    .+.+.......       ....
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            457899999999999999887642110     000000                    01111000000       0113


Q ss_pred             EEEEEEEeCCCcccccc----cchhhhcCC--c-EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           57 TVRLQLWDTAGQERFRS----LIPSYIRDS--S-VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~----~~~~~~~~~--~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      .+.+.++||+|......    ....++...  + -.++|.|++..  ...+...+..+..   . -+-=++.||.|....
T Consensus       254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~---~-~~~~~I~TKlDet~~  327 (388)
T PRK12723        254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP---F-SYKTVIFTKLDETTC  327 (388)
T ss_pred             CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC---C-CCCEEEEEeccCCCc
Confidence            46899999999553322    112222322  2 57889998865  2233333333321   1 123455699997543


Q ss_pred             cccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880          130 RQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      .    -.+..++...+.++..++  +|+++
T Consensus       328 ~----G~~l~~~~~~~~Pi~yit--~Gq~v  351 (388)
T PRK12723        328 V----GNLISLIYEMRKEVSYVT--DGQIV  351 (388)
T ss_pred             c----hHHHHHHHHHCCCEEEEe--CCCCC
Confidence            2    345555666666554433  35555

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.70  E-value=0.00017  Score=50.90  Aligned_cols=139  Identities=18%  Similarity=0.210  Sum_probs=71.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC----------Cc-----------ccceeeeEEEEEEEE---------E-CCeEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD----------NT-----------YQATIGIDFLSKTMY---------L-EDRTV   58 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~----------~~-----------~~~~~~~~~~~~~~~---------~-~~~~~   58 (170)
                      -+++++|++|+||||++..+......          +.           +....+++.....-.         . ....+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~  155 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV  155 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence            58999999999999999877542110          00           000011111110000         0 11246


Q ss_pred             EEEEEeCCCccccccc----chhhh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           59 RLQLWDTAGQERFRSL----IPSYI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~----~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      .+.++||+|.......    +..++  .+.+-+++|.|++..  .+++..++..+..   . .+-=++.||.|....   
T Consensus       156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~---~-~~~~~I~TKlDet~~---  226 (270)
T PRK06731        156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD---I-HIDGIVFTKFDETAS---  226 (270)
T ss_pred             CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC---C-CCCEEEEEeecCCCC---
Confidence            8999999996543221    11222  245668889997633  1223333333322   1 223455699997543   


Q ss_pred             CHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880          133 SIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                       .-.+...+...+.++..++  +|+++.
T Consensus       227 -~G~~l~~~~~~~~Pi~~it--~Gq~vp  251 (270)
T PRK06731        227 -SGELLKIPAVSSAPIVLMT--DGQDVK  251 (270)
T ss_pred             -ccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence             2345566666666654443  344443

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.69  E-value=2.5e-05  Score=50.89  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ||+|.|.+|+|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999864

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.68  E-value=3.7e-05  Score=52.77  Aligned_cols=21  Identities=19%  Similarity=0.346  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+++|++|||||||++-+.+-
T Consensus        32 vsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          32 VAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999988763

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.67  E-value=3.9e-05  Score=51.65  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++||+|||||||++.+-.-.
T Consensus        30 vv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126          30 VVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCc
Confidence            58899999999999999886533

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.66  E-value=0.00031  Score=47.37  Aligned_cols=22  Identities=14%  Similarity=0.291  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030880           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~   33 (170)
                      ++++|++||||||+++.+....
T Consensus         4 ilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           4 VLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999887654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=97.65  E-value=0.00019  Score=50.99  Aligned_cols=106  Identities=17%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------------
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------------   70 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------------   70 (170)
                      +.....+++++|+++.|||++++++........ ...             ...+.+..+.+|....              
T Consensus        57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~-------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga  122 (302)
T PF05621_consen   57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED-------------AERIPVVYVQMPPEPDERRFYSAILEALGA  122 (302)
T ss_pred             cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC-------------CccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence            344456899999999999999999987543221 111             1122444444443111              


Q ss_pred             ----------ccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880           71 ----------FRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        71 ----------~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  124 (170)
                                ........++....=++++|=-+.   -+..+....++.++.... ..+|++.+|++-
T Consensus       123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~  190 (302)
T PF05621_consen  123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE  190 (302)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence                      111233456678888888884322   345555666666655543 678999888754

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.65  E-value=4.4e-05  Score=52.08  Aligned_cols=23  Identities=13%  Similarity=0.213  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|||||||++-+-.-.
T Consensus        33 ~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999886543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.64  E-value=5.8e-05  Score=41.85  Aligned_cols=22  Identities=14%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030880           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~   33 (170)
                      +.+.|++|+||||+.+.+...-
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999988653

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.63  E-value=0.0036  Score=41.17  Aligned_cols=84  Identities=12%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH
Q 030880           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE  138 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  138 (170)
                      .+.++|+|+...  ......+..+|.++++.+.+ ..++..+...+..+....  .....++.|+.+.....  ..+...
T Consensus        64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~  136 (179)
T cd02036          64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPE-ISSLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE  136 (179)
T ss_pred             CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCC-cchHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence            689999997543  23445578999999999876 345555555555554421  23466788999864322  122234


Q ss_pred             HHHhhcCCeEE
Q 030880          139 AKSRELNVMFI  149 (170)
Q Consensus       139 ~~~~~~~~~~~  149 (170)
                      .+.+.++.+++
T Consensus       137 ~~~~~~~~~v~  147 (179)
T cd02036         137 DIEEILGVPLL  147 (179)
T ss_pred             HHHHHhCCCEE
Confidence            44445565543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>TIGR00235 udk uridine kinase

Probab=97.62  E-value=7.5e-05  Score=50.69  Aligned_cols=26  Identities=15%  Similarity=0.157  Sum_probs=22.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +.+..-|.+.|++|||||||++.+.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~   28 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYE   28 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHH
Confidence            34456789999999999999999875

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.59  E-value=6.3e-05  Score=49.46  Aligned_cols=24  Identities=25%  Similarity=0.548  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .=+++.||+|+|||||++.|+...
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            457888999999999999999876

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=97.59  E-value=0.001  Score=44.00  Aligned_cols=86  Identities=17%  Similarity=0.163  Sum_probs=59.6

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (170)
                      ..+.+.++|+|+...  ......+..+|.++++...+ ..+...+.+.+..+...   +.|+.++.||.|....   ...
T Consensus        91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~-~~~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~  161 (179)
T cd03110          91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPT-PSGLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAE  161 (179)
T ss_pred             cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCC-cccHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHH
Confidence            457899999996532  23345578999999999987 44555666666655433   4677899999996432   345


Q ss_pred             HHHHHHhhcCCeEEE
Q 030880          136 EGEAKSRELNVMFIE  150 (170)
Q Consensus       136 ~~~~~~~~~~~~~~~  150 (170)
                      ++.++.++.+++++.
T Consensus       162 ~~~~~~~~~~~~vl~  176 (179)
T cd03110         162 EIEDYCEEEGIPILG  176 (179)
T ss_pred             HHHHHHHHcCCCeEE
Confidence            677788888877653

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.59  E-value=5.4e-05  Score=51.51  Aligned_cols=68  Identities=19%  Similarity=0.177  Sum_probs=37.3

Q ss_pred             EEEEEEeCCCccccccc----c--hhhhcCCcEEEEEEeCC------ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880           58 VRLQLWDTAGQERFRSL----I--PSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~--~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  125 (170)
                      -...++|+|||-++-..    +  ...+++.+.-+.++.+.      +|..|-  ...+-.+.....-..|-+=|..|+|
T Consensus        97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~i--S~lL~sl~tMl~melphVNvlSK~D  174 (290)
T KOG1533|consen   97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFI--SSLLVSLATMLHMELPHVNVLSKAD  174 (290)
T ss_pred             CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHH--HHHHHHHHHHHhhcccchhhhhHhH
Confidence            46889999998775322    1  22344566555555443      454443  2333333332223466666679999


Q ss_pred             CC
Q 030880          126 LV  127 (170)
Q Consensus       126 ~~  127 (170)
                      +.
T Consensus       175 l~  176 (290)
T KOG1533|consen  175 LL  176 (290)
T ss_pred             HH
Confidence            75

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.58  E-value=0.0001  Score=45.56  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -|++-|+-|+|||||++.+....
T Consensus        17 vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   17 VILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            47778999999999999888754

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.58  E-value=7.1e-05  Score=47.20  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =.++|+|+.|+|||||++.+.+..
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEccCCCccccceeeecccc
Confidence            368999999999999999887644

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.55  E-value=0.00078  Score=49.23  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      ...+|++.|++|||||||++.++..-.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            357899999999999999999987543

>PRK14530 adenylate kinase; Provisional

Probab=97.55  E-value=8.5e-05  Score=50.72  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+|+++|++||||||+.+.|..
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~   25 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAE   25 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998864

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.55  E-value=9.8e-05  Score=50.85  Aligned_cols=26  Identities=23%  Similarity=0.360  Sum_probs=22.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..+++|+++|+|||||||+...|...
T Consensus         4 ~~~mrIvl~G~PGsGK~T~a~~La~~   29 (229)
T PTZ00088          4 KGPLKIVLFGAPGVGKGTFAEILSKK   29 (229)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999988653

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.54  E-value=9e-05  Score=46.39  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=22.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDN   36 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~   36 (170)
                      -.++++|++|+||||++..+.......
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            478999999999999999998765543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06217 hypothetical protein; Validated

Probab=97.54  E-value=8.6e-05  Score=49.40  Aligned_cols=23  Identities=13%  Similarity=0.237  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+|+|+|.+|||||||.++|...
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>KOG2484 consensus GTPase [General function prediction only]

Probab=97.53  E-value=8.5e-05  Score=54.17  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .+.+++-|+|-|++||||+||+|..+..-.. .+..+.+.....+..+.   .+.+.|.||
T Consensus       250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ldk---~i~llDsPg  306 (435)
T KOG2484|consen  250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNV-GNVPGVTRSMQEVKLDK---KIRLLDSPG  306 (435)
T ss_pred             CcceEeeeecCCCCChhHHHHHHHHhccccC-CCCccchhhhhheeccC---CceeccCCc
Confidence            4568999999999999999999998776332 22223333333343333   788999999

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.52  E-value=9.2e-05  Score=46.18  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Q 030880           12 LVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~   33 (170)
                      |++.|++|+|||++++.+....
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6899999999999999998653

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.51  E-value=0.0013  Score=43.50  Aligned_cols=25  Identities=16%  Similarity=0.213  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -.+.++|+.|+|||||++.+.+-..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCC
Confidence            3688999999999999999887543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.51  E-value=9.6e-05  Score=46.81  Aligned_cols=21  Identities=29%  Similarity=0.699  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++|++|+|||||++.|...
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            688999999999999999864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.51  E-value=9.4e-05  Score=45.94  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+|.|.+||||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            689999999999999988754

...

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.50  E-value=0.0001  Score=49.16  Aligned_cols=22  Identities=18%  Similarity=0.369  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|+|||||++.|...
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6889999999999999999664

>PRK03839 putative kinase; Provisional

Probab=97.50  E-value=9.8e-05  Score=48.94  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +|+++|++|+||||+.++|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999988754

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.49  E-value=0.00068  Score=49.34  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      ...+|+++|++|||||||++.|+..-.
T Consensus       159 ~~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        159 SKKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            357899999999999999999986543

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.49  E-value=0.00011  Score=44.23  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030880           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~   30 (170)
                      -.++++|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            458999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.48  E-value=0.0001  Score=48.78  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.47  E-value=0.00016  Score=49.11  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=22.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +....-++++|++|+|||||++.|...
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            344566888999999999999999754

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.46  E-value=0.00012  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .|+++|++|+|||+|++.+...
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~   22 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAAL   22 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988753

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.46  E-value=0.00013  Score=50.38  Aligned_cols=25  Identities=28%  Similarity=0.719  Sum_probs=22.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++|++++|++|||||+|+..++..
T Consensus        12 ~~fr~viIG~sGSGKT~li~~lL~~   36 (241)
T PF04665_consen   12 DPFRMVIIGKSGSGKTTLIKSLLYY   36 (241)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHh
Confidence            4689999999999999999988864

This is thought to be an ATPase involved in viral DNA packaging [].

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.00049  Score=51.04  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC----CC------CCcccce-----------eeeEEEEEEEE-----E-------
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD----KF------DNTYQAT-----------IGIDFLSKTMY-----L-------   53 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~----~~------~~~~~~~-----------~~~~~~~~~~~-----~-------   53 (170)
                      .++..|+++|..|+||||..-+|...    ..      .+.+.|.           .+.+++.....     +       
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            34678999999999999998876531    00      1111110           11122221100     0       


Q ss_pred             -CCeEEEEEEEeCCCcccccccchh------hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           54 -EDRTVRLQLWDTAGQERFRSLIPS------YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        54 -~~~~~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                       ....+.+.|+||+|....+...-.      -.-+.|=+++|.|+.-.+.-.+...-+++-..     + .=|+.||.|-
T Consensus       178 ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~-----i-tGvIlTKlDG  251 (451)
T COG0541         178 AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALG-----I-TGVILTKLDG  251 (451)
T ss_pred             HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcC-----C-ceEEEEcccC
Confidence             123458999999995544332111      13378899999998866544443333232211     1 1344588875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.45  E-value=0.00011  Score=53.09  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++||+|||||||++.+.+=
T Consensus        32 ~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          32 VVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            788999999999999988763

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.43  E-value=0.00014  Score=48.45  Aligned_cols=25  Identities=16%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .-.++++|++|+|||||++.+.+-.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i   49 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFI   49 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4579999999999999999988654

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00013  Score=49.19  Aligned_cols=20  Identities=15%  Similarity=0.404  Sum_probs=17.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 030880           11 KLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~   30 (170)
                      =.+++||+|||||||++.+-
T Consensus        35 VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117          35 VTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             eEEEECCCCcCHHHHHHHHH
Confidence            36889999999999998763

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=97.42  E-value=0.00013  Score=50.74  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++||.|||||||++.+.+
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g   50 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG   50 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            368899999999999999886

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.42  E-value=0.00015  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~   30 (170)
                      .-.++++|+.|+|||||++.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3468999999999999999886

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.42  E-value=0.00014  Score=48.11  Aligned_cols=22  Identities=23%  Similarity=0.545  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|+|||||++.|...
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            4789999999999999999874

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.42  E-value=0.00014  Score=48.47  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .=|+++|++|+|||||+++|+...
T Consensus         5 ~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          5 KLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            348889999999999999998753

>PRK14532 adenylate kinase; Provisional

Probab=97.42  E-value=0.00014  Score=48.54  Aligned_cols=22  Identities=23%  Similarity=0.527  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +|+++|+|||||||+..+|...
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~   23 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEE   23 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999753

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.42  E-value=0.00021  Score=47.17  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...-|++.|.+|+||||+.+.+...
T Consensus         6 ~~~~I~i~G~~GsGKst~a~~l~~~   30 (176)
T PRK05541          6 NGYVIWITGLAGSGKTTIAKALYER   30 (176)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            3468999999999999999988653

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.41  E-value=0.00016  Score=45.99  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .|+++|+.++|||||++.|++..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998653

>PRK01889 GTPase RsgA; Reviewed

Probab=97.41  E-value=0.00024  Score=52.19  Aligned_cols=25  Identities=20%  Similarity=0.539  Sum_probs=21.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -+++++|.+|+|||||++.+.+...
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~~  220 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEEV  220 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhcc
Confidence            4789999999999999999997543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.41  E-value=0.00021  Score=46.92  Aligned_cols=23  Identities=17%  Similarity=0.261  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-+.++|.+|||||||++++...
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHH
Confidence            35889999999999999999864

>PRK08233 hypothetical protein; Provisional

Probab=97.41  E-value=0.00019  Score=47.51  Aligned_cols=24  Identities=17%  Similarity=0.192  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..-|.+.|++|||||||.++|...
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhh
Confidence            356788899999999999999764

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.40  E-value=0.0008  Score=51.81  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      +++.||+|+||||.++.|...
T Consensus        48 LlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   48 LLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            455699999999999988764

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.39  E-value=0.00015  Score=48.20  Aligned_cols=21  Identities=14%  Similarity=0.306  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -|+++|++||||||+++.+..
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999999873

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.38  E-value=0.001  Score=48.11  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=22.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      ..++++.|++|||||||++.|+...
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4589999999999999999998743

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.38  E-value=0.0014  Score=46.27  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+++.|++|+||||+++.++...
T Consensus        82 lilisG~tGSGKTT~l~all~~i  104 (264)
T cd01129          82 IILVTGPTGSGKTTTLYSALSEL  104 (264)
T ss_pred             EEEEECCCCCcHHHHHHHHHhhh
Confidence            48999999999999999987654

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.37  E-value=0.0002  Score=48.60  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=22.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +...|.+.|++|||||||++.|...
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            5678999999999999999988764

>PRK13949 shikimate kinase; Provisional

Probab=97.36  E-value=0.00019  Score=47.17  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +|+++|++|+||||+.+.|...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~   24 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARE   24 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999987653

>PRK14531 adenylate kinase; Provisional

Probab=97.36  E-value=0.00019  Score=47.75  Aligned_cols=24  Identities=33%  Similarity=0.537  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +.+|+++|+|||||||+...+...
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~   25 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAA   25 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999988654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.35  E-value=0.00018  Score=48.41  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |.+.|++|||||||++.|...
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999988653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.34  E-value=0.0014  Score=47.14  Aligned_cols=143  Identities=20%  Similarity=0.221  Sum_probs=74.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc---------------------eeeeEEEEEEEE-------------
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA---------------------TIGIDFLSKTMY-------------   52 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~-------------   52 (170)
                      ..++-++++|-.|+||||-|-+|..........-                     -.+.+.......             
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            3467899999999999999988765211110000                     011111111000             


Q ss_pred             ECCeEEEEEEEeCCCcccccc-c------chhhhcCC-----cEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEE
Q 030880           53 LEDRTVRLQLWDTAGQERFRS-L------IPSYIRDS-----SVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVL  119 (170)
Q Consensus        53 ~~~~~~~~~i~D~~g~~~~~~-~------~~~~~~~~-----~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~iv  119 (170)
                      -...++.+.++||+|.-.-.. +      ..+.++..     +-++++.|++..+ ++...+.+ ++.-.     + --+
T Consensus       217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F-~eav~-----l-~Gi  289 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIF-NEAVG-----L-DGI  289 (340)
T ss_pred             HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHH-HHhcC-----C-ceE
Confidence            012457899999999332111 1      11112233     3388888988664 44444433 33322     1 245


Q ss_pred             EEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880          120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       120 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++||.|-...-.+    +...+..+++|+..+-.  |++++++
T Consensus       290 IlTKlDgtAKGG~----il~I~~~l~~PI~fiGv--GE~~~DL  326 (340)
T COG0552         290 ILTKLDGTAKGGI----ILSIAYELGIPIKFIGV--GEGYDDL  326 (340)
T ss_pred             EEEecccCCCcce----eeeHHHHhCCCEEEEeC--CCChhhc
Confidence            6799996443322    33445666776555432  4555543

>PLN02200 adenylate kinase family protein

Probab=97.34  E-value=0.00029  Score=48.72  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+..|+++|+|||||||+..+|..
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346789999999999999998875

>PRK02496 adk adenylate kinase; Provisional

Probab=97.32  E-value=0.00023  Score=47.31  Aligned_cols=23  Identities=26%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+++++|++|+||||+.+.|...
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~   24 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEH   24 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.32  E-value=0.0002  Score=47.95  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +|+++|++||||||+.+.|...
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~   22 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKK   22 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988754

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK00625 shikimate kinase; Provisional

Probab=97.32  E-value=0.00023  Score=46.93  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      +|+++|.+|+||||+.+.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~   22 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAK   22 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		1e-67
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-67
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		5e-67
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-66
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		3e-66
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-66
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		1e-65
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-56
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-31
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-31
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-31
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-31
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		5e-31
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		5e-31
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		8e-31
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		9e-31
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		9e-31
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-30
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		2e-30
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-30
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-30
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-30
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-30
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		2e-30
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-30
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-30
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-30
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		6e-29
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		6e-29
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		3e-28
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		3e-28
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		3e-28
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		6e-28
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-28
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		8e-28
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		1e-27
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		2e-27
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-27
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-27
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-27
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-27
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-27
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		3e-27
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-27
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-27
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		6e-27
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-27
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-26
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		1e-26
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		1e-26
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-26
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-26
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-26
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-26
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		4e-26
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		4e-26
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		5e-26
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-26
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		9e-26
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-25
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-25
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-25
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-25
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-25
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-25
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-25
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-25
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		4e-25
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-25
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		5e-25
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		6e-25
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		6e-25
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		6e-25
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		7e-25
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-24
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-24
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-24
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-24
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-24
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		9e-24
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		1e-23
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-23
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		2e-23
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		2e-23
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		3e-23
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		7e-23
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-22
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-22
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		9e-22
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-21
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-21
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		3e-21
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		3e-21
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-21
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		6e-21
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		8e-21
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-20
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-20
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-20
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-20
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-19
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-19
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		4e-19
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-18
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-15
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-14
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-14
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-14
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-14
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-14
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		2e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		2e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-14
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-14
1byu_A	216	Canine Gdp-Ran Length = 216		4e-14
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-14
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		5e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-14
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		6e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-14
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		8e-14
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		8e-14
3icq_B	171	Karyopherin Nuclear State Length = 171		9e-14
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		9e-14
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-13
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-13
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		1e-13
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		1e-13
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-13
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		1e-13
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-13
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-13
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-13
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		2e-13
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-13
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-13
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-13
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		7e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-12
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		1e-12
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		6e-12
1mh1_A	186	Small G-Protein Length = 186		6e-12
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		7e-12
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		7e-12
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		8e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		8e-12
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-11
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-11
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-11
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		1e-11
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-11
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-11
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-11
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-11
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-11
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		2e-11
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		2e-11
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		2e-11
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		2e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		2e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		2e-11
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-11
1s1c_A	183	Crystal Structure Of The Complex Between The Human		3e-11
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		3e-11
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		3e-11
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		3e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-11
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		3e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-11
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-11
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		4e-11
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		6e-11
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		8e-11
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		8e-11
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		9e-11
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		1e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		1e-10
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-10
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-10
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-10
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-10
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		3e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		4e-10
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		4e-10
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-10
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-10
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-10
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-10
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-10
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		4e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		4e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		5e-10
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		5e-10
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-10
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		5e-10
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		5e-10
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		5e-10
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-10
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-10
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		6e-10
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		6e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		6e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		7e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		8e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		8e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		9e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		9e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		9e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		1e-09
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-09
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-09
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-09
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-09
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		1e-09
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		1e-09
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		1e-09
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-09
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		1e-09
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-09
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-09
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-09
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-09
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		2e-09
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-09
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		3e-09
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		3e-09
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		3e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		4e-09
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-09
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-09
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		4e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		4e-09
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-09
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-09
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		5e-09
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		5e-09
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		5e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-09
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		6e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-09
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		6e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		6e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		6e-09
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		7e-09
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		7e-09
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		7e-09
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		7e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		7e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		1e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-08
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-08
2kb0_A	178	Cdc42(T35a) Length = 178		2e-08
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		2e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-08
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		4e-08
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-08
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		6e-08
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		7e-08
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-08
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-07
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-06
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-06
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		2e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		3e-05
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-05
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		7e-05
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		8e-05
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		2e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-04
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		6e-04
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		8e-04

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  251 bits (642), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 134/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 2   SPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62  TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  249 bits (637), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 121/152 (79%), Positives = 132/152 (86%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ
Sbjct: 1   KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKTDL +
Sbjct: 61  ERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLAD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 121 KRQVSIEEGERKAKELNVMFIETSAKAGYNVK 152

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  249 bits (636), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/156 (78%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 10  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 69
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRSLIPSYIR               SF  TSKWID+VRTERGSDVII+LVGNKT
Sbjct: 70  TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKT 129
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 130 DLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  247 bits (631), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 2   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 62  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 122 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 157

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  246 bits (629), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 121/156 (77%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  246 bits (629), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 120/156 (76%), Positives = 133/156 (85%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWD
Sbjct: 9   NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWD 68
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIR               SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 69  TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 128
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 129 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 164

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  244 bits (624), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/153 (76%), Positives = 131/153 (85%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG
Sbjct: 1   GKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 60
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QERFRSLIPSYIR               SF  TSKWID+VRTERGSDVII+LVGNKTDL 
Sbjct: 61  QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +KRQ++IEEGE +++EL+VMFIETSAK G+N+K
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVK 153

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 119/155 (76%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KYKLVFLG+Q+VGKTSIITRF YD FDN YQ+TIGIDFLSKT+YL++  VRLQLWDTAGQ
Sbjct: 1   KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ 60
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRSLIPSYIR             RQSF NT+KWI ++  ERG DVII LVGNKTDL +
Sbjct: 61  ERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
            R+V+ EEG  K++E N  F ETSAKAG NIKV  
Sbjct: 121 LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  131 bits (330), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             R SFL+   WI++VR   GS+++ +L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 130 RQVSIEEGEAKSRELNVMF-IETSAKAGFNIKVCLM 164
           R+VS+ E ++ +   +++  IETSAK   N++   +
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFL 185

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  131 bits (329), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 58/156 (37%), Positives = 96/156 (61%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
            S + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++++ L+D TV+ ++W
Sbjct: 3   ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
           DTAGQER+ SL P Y R             +++F     W+ E++ +    ++I L GNK
Sbjct: 63  DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 122
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            DL  KR V  EE +A + + +++F+ETSAK   N+
Sbjct: 123 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNV 158

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  130 bits (328), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 65/151 (43%), Positives = 95/151 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D + ++Y +TIG+DF  +T+ LE++TV+LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             R SF N  +WI E+      +V  +LVGNK DLV K
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ +EG   +    + FIETSAK  +N++
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVE 160

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  130 bits (327), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 1   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 60
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R               +F     W+ E++ +   +++I L GNK DL
Sbjct: 61  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 120
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E +A + + +++F+ETSAK   N+    M
Sbjct: 121 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFM 158

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 96/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  130 bits (326), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 96/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 162

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+  VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/152 (41%), Positives = 92/152 (60%), Gaps = 3/152 (1%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-- 128
           F SL P Y R              QSF+    W+ E+  +   D+II LVGNK D ++  
Sbjct: 65  FASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEG 124
Query: 129 -KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +R+V+ EEGE  + E  ++F ETSAK G N+
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 94/153 (61%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 5   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 64
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 65  GQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 124
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
             KR V  +E ++ + + +++F ETSAK   N+
Sbjct: 125 ANKRAVDFQEAQSYADDNSLLFXETSAKTSXNV 157

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 95/151 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS E GE  + +  + F+ETSAKA  N++
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVE 159

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 93/150 (62%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQER
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           + SL P Y R             + SF    KW+ E++ +   ++++ L GNK+DL++ R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +V+ E+ +  ++E  + F+ETSAK   N+K
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVK 163

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  127 bits (320), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 95/151 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS E GE  + +  + F+ETSAKA  N++
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVE 157

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  127 bits (319), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 95/159 (59%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG ER+ SL P Y R               +F     W+ E++ +   +++I L GNK D
Sbjct: 62  AGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           L  KR V  +E +A + + +++F+ETSAK   N+    M
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFM 160

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/159 (35%), Positives = 95/159 (59%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ ++KLV LG+ +VGK+S++ RF+  +F    ++TI   FL++T+ L+D TV+ ++WDT
Sbjct: 2   SICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQER+ SL P Y R               +F     W+ E++ +   +++I L GNK D
Sbjct: 62  AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKAD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           L  KR V  +E +A + + +++F+ETSAK   N+    M
Sbjct: 122 LASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFM 160

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  127 bits (318), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 95/158 (60%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 3   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 62
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           G ER+ SL P Y R              +SF     W+ E++ +   +++I L GNK DL
Sbjct: 63  GLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 122
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
             KR V  +E ++ + + +++F+ETSAK   N+    M
Sbjct: 123 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 160

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R             R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  123 bits (308), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 97/155 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R             R +F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           R+V  EEGEA +RE  ++F+ETSAK   N++   +
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFI 165

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 9   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 69  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 127
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            V+ ++GEA ++EL + FIE+SAK   N+
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNV 156

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 22  KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 81
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 82  FRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 140
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            V+ ++GEA ++EL + FIE+SAK   N+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNV 169

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  120 bits (301), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/156 (35%), Positives = 88/156 (56%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   +  +WD
Sbjct: 19  SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWD 78
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERF SL P Y R             + SF    KW+ E++     ++++ + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V +++ +  +  +  + +ETSAK   NI+
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  119 bits (299), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 92/160 (57%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +   +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++L
Sbjct: 14  LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKL 73
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           Q+WDTAGQER+R++  +Y R             ++SF     W  +++T    +  ++LV
Sbjct: 74  QIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILV 133
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNK DL ++R V  E+G   + +L   F E SAK   N+K
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVK 173

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  119 bits (298), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/149 (39%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D+ E R
Sbjct: 65  FRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            V+ ++GEA ++EL + FIE+SAK   N+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNV 152

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  119 bits (298), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            V+ ++GEA ++EL + FIE+SAK   N+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNV 152

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  118 bits (296), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R              +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y R             + SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           +R V  E+GE  ++E  + F+ETSAK G N+ +  
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 92/157 (58%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAG
Sbjct: 5   ALFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAG 64
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QERFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL 
Sbjct: 65  QERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 124
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
            K+ V     +  +  L + F+ETSAK   N++   M
Sbjct: 125 TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 161

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQER
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  +Y R              ++F N  +W   V      +  ++LVGNK+D  E R
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XETR 123
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            V+ ++GEA ++EL + FIE+SAK   N+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNV 152

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 91/155 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 91/155 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 180

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 91/155 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 161

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 92/155 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++S+ N  +W+ E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFM 164

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 92/155 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++S+ N  +W+ E+      +V  +LVGNK+DL  K
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFM 164

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 90/155 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK  ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  116 bits (291), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 90/154 (58%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQER
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           FR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K+
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
            V     +  +  L + F+ETSAK   N++   M
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 154

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 96/151 (63%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 156

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 90/151 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 184

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 90/144 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 130 RQVSIEEGEAKSRELNVMFIETSA 153
           R V  EE +  ++E  ++F ETSA
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSA 157

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 96/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R V  +E  A + +  + FIETSA    N++   
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 96/154 (62%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R V  +E  A + +  + FIETSA    N++   
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  114 bits (286), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQ 68
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F +K++ L++ + ++ Q+WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+R++  +Y R             + SF N  KW+ E+R    S+++I+LVGNK+DL  
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV 170
            R ++  +    +++  + FIETSA    N+++      N +
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  114 bits (285), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 85/154 (55%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +L + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 2   SLRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L P Y R              ++F     W+ E+R      +++ + GNK D
Sbjct: 62  AGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 121
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L + R+V   + +  +  ++ +F+ETSAK   NI
Sbjct: 122 LTDVREVMERDAKDYADSIHAIFVETSAKNAINI 155

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 84/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 85/155 (54%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R              ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL + R+V   + +  +  ++ +F+ETSAK   NI
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAINI 156

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  113 bits (283), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/155 (36%), Positives = 90/155 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF N  +W+ E+      +V  +LVG K DL  K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
           + V     +  +  L + F+ETSAK   N++   M
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 163

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  E+G+  + +L   F E SAK   +++
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVR 174

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/151 (37%), Positives = 87/151 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   +  L   F E SAK   N+K
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVK 156

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  112 bits (280), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R              +SF+N  +W+ E+  +   DV  +LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-NQNCDDVCRILVGNKNDDPER 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V  E+    + ++ +   ETSAK   N++
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVE 159

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 95/154 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R V  +E  A + +  + FIETSA    N++   
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 94/161 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNTV 170
           R+V+  E    ++E  +MF+ETSA  G N++   +    T+
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  112 bits (279), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/168 (38%), Positives = 90/168 (53%), Gaps = 7/168 (4%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+   YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWD
Sbjct: 24  SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWD 83
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQERFRS+  SY R              +SFLN  +W+D +       V I+LVGNK 
Sbjct: 84  TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKA 143
Query: 125 DLVE------KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH 166
           D+ +      ++ V    GE  +     +F ETSAK G NI V  +LH
Sbjct: 144 DIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNI-VEAVLH 190

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 95/154 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R V  +E  A + +  + FIETSA    N++   
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  111 bits (277), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 94/154 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I LVGNK+DL   
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R V  +E  A + +  + FIETSA    N++   
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  111 bits (277), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 94/154 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               ++ N  +W+ E+R    S+++I LVGNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R V  +E  A + +  + FIETSA    N++   
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 91/159 (57%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 8   APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 67
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQERFR++  SY R             R ++ + S W+ + R     + +I+L+G
Sbjct: 68  IWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 127
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           NK DL  +R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 128 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 166

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 21  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 80
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 81  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAK 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/159 (35%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           +P  A  K +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ
Sbjct: 19  SPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQ 78
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQERF S+  +Y R             +++F +  KW+  +      D  ++LVG
Sbjct: 79  IWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVG 138
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
           NK D    R+++ ++GE  ++++  M F E SAK  FN+
Sbjct: 139 NKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 83/145 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+   FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y R               SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 130 RQVSIEEGEAKSRELNVMFIETSAK 154
           R VSI+E E+ +  +      TSAK
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAK 151

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  110 bits (274), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVE 159

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 89/144 (61%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  D+F+   ++TIG++F ++T+ +E++ ++ Q+WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R               S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSA 153
           R V  +E +  + E  ++F ETSA
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSA 154

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 87/149 (58%), Gaps = 2/149 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTD 125
           GQERFR+L PSY R             R +F+    W++E+ T    +D++  LVGNK D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
             E R+V   EG   +R+ + +FIE SAK
Sbjct: 133 -KENREVDRNEGLKFARKHSXLFIEASAK 160

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  109 bits (273), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVE 159

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  109 bits (273), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R             ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVE 172

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 57/151 (37%), Positives = 87/151 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              +SF     W  +++T    +  ++LVGNK D  ++
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   +  L   F E SAK   N+K
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVK 159

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 90/159 (56%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP +    +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ
Sbjct: 23  APYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQ 82
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVG 121
           +WDTAGQ RFR++  SY R             R ++ + S W+ + R     + +I+L+G
Sbjct: 83  IWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIG 142
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           NK DL  +R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 143 NKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVE 181

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/151 (34%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVE 161

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 91/154 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R+V  EE    +    ++F+ETSA    N+++  
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 179

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 91/154 (59%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R              Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           R+V  EE    +    ++F+ETSA    N+++  
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 164

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  105 bits (263), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIK 160
            E RQV+ +  +A    + N+ + ETSAK   N++
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIK 160
            E RQV+ +  +A    + N+ + ETSAK   N++
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 93/170 (54%), Gaps = 9/170 (5%)
Query: 2   APVSALAK---YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
            P+ +  K   +K++ LGD  VGK+S++ R++ +KFD+    TIG++FL+K + ++   V
Sbjct: 1   GPLGSAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFV 60
Query: 59  RLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSD 114
            +Q+WDTAGQERFRSL   + R              QSF N S W  E       +    
Sbjct: 61  TMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES 120
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKVCL 163
              V++GNKTD+ E RQVS EE +A  ++  +  + ETSAK   N+    
Sbjct: 121 FPFVILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAF 169

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 88/151 (58%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G +++
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVE 162

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 3   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 60
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R              QSF N S W  E       +      
Sbjct: 61  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 120
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKVCL 163
            V++GNK D+ E RQVS EE +A  R+  +  + ETSAK   N+    
Sbjct: 121 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 167

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 8/168 (4%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVI 116
           Q+WDTAGQERFRSL   + R              QSF N S W  E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118
Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKVCL 163
            V++GNK D+ E RQVS EE +A  R+  +  + ETSAK   N+    
Sbjct: 119 FVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 165

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  104 bits (260), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK D 
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIK 160
            E RQV+ +  +A    + N+ + ETSAK   N++
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  103 bits (258), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 7   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  +Y R             R+SF   S W ++V  E G D+   LV NK DL++  
Sbjct: 67  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 125
Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +  EE E  ++ L + F  TS K   N+
Sbjct: 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNV 154

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 6/155 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAG ER
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLER 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTDL 126
           F+SL  ++ R               +F     W DE   +       +   V++GNK DL
Sbjct: 70  FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL 129
Query: 127 VEKRQVSIEEGEAKS-RELNVMFIETSAKAGFNIK 160
            E RQV+ +  +A    + N+ + ETSAK   N++
Sbjct: 130 -ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 87/151 (57%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R             R+++   + W+ + R     +++I+L GNK DL   
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G +++
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVE 159

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/161 (35%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V L
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAGQERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 187

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 99.4 bits (246), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W+ +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 84/160 (52%), Gaps = 11/160 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRL 60
           K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + L
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QLWDTAG ERFRSL  ++ R              QSFLN   WI +++    S+   IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            GNK+DL ++R V  EE    + +  + + ETSA  G NI
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNI 172

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 87/158 (55%), Gaps = 6/158 (3%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K++ LGD  VGK+S++ R++ +KFD+    TIG++FL++ + ++ R V LQ+WDTAGQER
Sbjct: 9   KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQER 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDL 126
           F+SL   + R             RQSF N   W  E       +       V++GNK D 
Sbjct: 69  FKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD- 127
Query: 127 VEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKVCL 163
            E RQV+ EE +    E  +  ++ETSAK   N+ V  
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAF 165

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 88/161 (54%), Gaps = 11/161 (6%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRL 60
           KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +  + +           V L
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVL 119
           QLWDTAG ERFRSL  ++ R             +QSFLN   W  +++      +  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVE 173

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 71/115 (61%)
Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           L+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQERF
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 72  RSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           R++  SY R             ++SF N  +W+ E+      +V  +LVGNK DL
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 96.7 bits (239), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70  RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
              QV  +  +  +   +    ETSAK
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 96.3 bits (238), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70  RFR-SLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R               SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
              QV  +  +  +   ++   ETSAK
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAK 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 10  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 68
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 69  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 128
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 129 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 164

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 14  NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 72
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 168

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 61  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           ++LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 2   NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAG E + ++  +Y R              +SF  T+ + +++ R +   +V  +LVGNK
Sbjct: 61  TAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 120
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 121 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANV 156

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 9/157 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQE 69
           K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQE
Sbjct: 10  KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTD 125
           RF+SL  ++ R               SF N   W DE               V++GNK D
Sbjct: 70  RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 129
Query: 126 LVEKRQVSIEEGE---AKSRELNVMFIETSAKAGFNI 159
             E +++  E+     AKS     +F+ TSAK   N+
Sbjct: 130 AEESKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINV 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 90.5 bits (223), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S+LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + D
Sbjct: 3   SSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILD 61
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGN 122
           TAG E + ++  +Y R              +SF  T+++ +++ R +   D I +++VGN
Sbjct: 62  TAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGN 121
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K+DL E+RQV +EE  +K+ E  V ++ETSAK   N+
Sbjct: 122 KSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 158

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 88.6 bits (218), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DTA
Sbjct: 1   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVI-IVLVGNKT 124
           G E + ++  +Y R              +SF  T+++ +++ R +   D I +++VGNK+
Sbjct: 60  GLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL E+RQV +EE  +K+ E  V ++ETSAK   N+
Sbjct: 120 DLEERRQVPVEEARSKAEEWGVQYVETSAKTRANV 154

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 40/190 (21%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------- 56
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D            
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 57  --------------------------TVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXX 90
                                      ++  +WDTAGQER+ S++P Y R          
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91  XXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
                +      W+++++    S+ II+LV NK D   K QV I E +  +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKI--SSNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182
Query: 151 TSAKAGFNIK 160
           TSAK G NIK
Sbjct: 183 TSAKTGTNIK 192

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 2/156 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S   KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + D
Sbjct: 1   SMQEKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE F ++   Y+R             R SF    K+  ++ R +   +  ++L+GNK
Sbjct: 60  TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            DL  +RQV+ EEG+  +R+L V ++E SAK   N+
Sbjct: 120 ADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNV 155

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 120
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 121 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 151

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 4/163 (2%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLW 63
           S + + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L  +  V LQ+W
Sbjct: 2   SHMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIW 61
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKW---IDEVRTERGSDVIIVLV 120
           D  GQ     ++  YI               QSF N   W   + +V  E  +  ++ LV
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
           GNK DL   R +  E+     +E        SAK G ++ +C 
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCF 164

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E++  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 74.3 bits (181), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 14/162 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N + KWI E+R      V I+LVG K DL + 
Sbjct: 67  YNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR-HYAPGVPIILVGTKLDLRDD 125
Query: 130 RQVSIEEGEA------KSREL-----NVMFIETSAKAGFNIK 160
           +Q  I+   A      +  EL     + ++IE S+K   N+K
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVK 167

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + +   TV L LWDTAGQE 
Sbjct: 10  KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQED 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N S KWI E++      V IVLVG K DL + 
Sbjct: 69  YNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTKLDLRDD 127
Query: 130 RQVSIEEGEA------KSRELNVM-----FIETSAKAGFNIK 160
           +Q  I+   A      +  EL  +     +IE S+K+  N+K
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVK 169

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F + Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 73.6 bits (179), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 72
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D V+
Sbjct: 73  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD-VK 129
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +R+V     +AK+    R+ N+ + + SAK+ +N +
Sbjct: 130 ERKV-----KAKTITFHRKKNLQYYDISAKSNYNFE 160

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y  T+G++      +     ++  +WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 127
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 128 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 3/147 (2%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTAGQ
Sbjct: 4   EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQ 62
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK DL 
Sbjct: 63  EEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL- 121
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
             R V  ++ +  +R   + FIETSAK
Sbjct: 122 PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 6   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E
Sbjct: 66  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 123
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           ++       +AK+    R+ N+ + + SAK+ +N +
Sbjct: 124 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 153

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y ATIG++    + Y     ++  +WDTAG E
Sbjct: 5   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGLE 64
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVE 128
           +F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ E
Sbjct: 65  KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKE 122
Query: 129 KRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           ++       +AK+    R+ N+ + + SAK+ +N +
Sbjct: 123 RKV------KAKTITFHRKKNLQYYDISAKSNYNFE 152

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 72.8 bits (177), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQL DTAGQ+ 
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           F  L P                   SF N S KW+ E+R        I+LVG ++DL E 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRC-HCPKAPIILVGTQSDLRED 139
Query: 130 RQVSIEEGEAKSREL 144
            +V IE  + K + +
Sbjct: 140 VKVLIELDKCKEKPV 154

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G + VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 126
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 127 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 158

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  + +  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D +
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVD-I 131
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           + R+V     +AKS    R+ N+ + + SAK+ +N +
Sbjct: 132 KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFE 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 12  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 71
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 72  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 129
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 130 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 160

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ D
Sbjct: 1   GSMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAG E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK
Sbjct: 60  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNK 119
Query: 124 TDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
            DL ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 CDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 156

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F ++   Y++             + +F +     +++ R +   DV ++LVGNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNI 159
           L ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINV 154

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 13/157 (8%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLV 127
           E+F  L   Y               R ++ N   W  D VR     ++ IVL GNK D+ 
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 123
Query: 128 EKRQVSIEEGEAKS----RELNVMFIETSAKAGFNIK 160
           +++       +AKS    R+ N+ + + SAK+ +N +
Sbjct: 124 DRKV------KAKSIVFHRKKNLQYYDISAKSNYNFE 154

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-GRTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
               L +W+  G+  +  L    ++             R SF   S+   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVK 160

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 60
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++             R SF   S+   ++R  R + D+ I+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 160

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 3/157 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAG 67
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G        +L+D+   ++  +WDTAG
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA-VNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           QE+   L   Y               R +  N ++W+ E +   G++  IV+  NK D+ 
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM 164
            ++++S +      +  N  + E SAK   N  +  +
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 83/162 (51%), Gaps = 19/162 (11%)
Query: 10  YKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLEDRTVR 59
           Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L      
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIIL------ 91
Query: 60  LQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-DVIIV 118
           L +W+  G+  +  L    ++             R SF   S+   ++R  R + D+ I+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 19/166 (11%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRF--MYDKFD--------NTYQATIGIDFLSKTMYLED 55
            +  Y++V +G+Q VGK+++   F  ++D  D        +TY+ T+ +D  S T+ L  
Sbjct: 3   GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL-- 60
Query: 56  RTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS-D 114
               L +W+  G+  +  L    ++             R SF   S+   ++R  R + D
Sbjct: 61  ----LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 114
Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVK 160

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +  +   ++D  V +++ DTAG
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQAT-IDDEVVSMEILDTAG 85
Query: 68  QERFRSLIPSYIRXXXXXXXXXXXXXRQSF---LNTSKWIDEVRTERGSDVIIVLVGNKT 124
           QE        ++R             R SF   L     +DE++  +  +V ++LVGNK 
Sbjct: 86  QEDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK--NVTLILVGNKA 142
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAG 156
           DL   RQVS EEGE  + EL   F E SA  G
Sbjct: 143 DLDHSRQVSTEEGEKLATELACAFYECSACTG 174

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 78/160 (48%), Gaps = 12/160 (7%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N   KW+ E+R     +V IVLVG K DL + 
Sbjct: 70  YSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR-RFAPNVPIVLVGTKLDLRDD 128
Query: 130 RQ--------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +         ++  +GE   +++    +IE S+K   N+K
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 77/163 (47%), Gaps = 14/163 (8%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++  TV L LWDTAGQE 
Sbjct: 8   KCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P   R             + S+ N   KW+ E++      + IVLVG K DL + 
Sbjct: 67  YNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK-HYAPGIPIVLVGTKLDLRDD 125
Query: 130 RQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIKV 161
           +Q          ++  +GE   + +  V ++E S+K   N+K 
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKA 168

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 4/157 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   K +      +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDT 59
Query: 66  AGQERFRSLIP--SYIRXXXXXXXXXXXXXRQSFLNTSKW-IDEVRTERGSDVIIVLVGN 122
              E+        S ++             R SF + S+  I   RT +   V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K DL   R+VS+EEG A +   +  FIETSA    N+
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/151 (33%), Positives = 74/151 (49%), Gaps = 2/151 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL + DTAGQE
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQE 68
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R             RQSF    K   ++ R +   D  +VLVGNK DL  
Sbjct: 69  EFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES 128
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +RQV   E  A     +V + E SAK   N+
Sbjct: 129 QRQVPRSEASAFGASHHVAYFEASAKLRLNV 159

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 68  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 126
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 127 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 66.2 bits (160), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 76/164 (46%), Gaps = 16/164 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWD
Sbjct: 5   SAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWD 63
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   S  N   KW  EV+     +V I+LVGNK
Sbjct: 64  TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNK 122
Query: 124 TDL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
            DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 123 KDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 166

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 24  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 82
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 83  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 141
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 142 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 74  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 132
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 133 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           GNK DL   R V   + +  +R   + +IETSAK
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 152

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           GNK DL   R V   + +  +R   + +IETSAK
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 152

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 122
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 123 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 159

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 72/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   SF N  +KW  EVR        I+LVG K DL + 
Sbjct: 65  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDD 123
Query: 130 R------------QVSIEEGEAKSREL-NVMFIETSA 153
           +             ++  +G A +RE+ +V ++E SA
Sbjct: 124 KDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSA 160

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  + F   Y  T+  D  S  + ++ + V L LWD
Sbjct: 6   SGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N  +KW  EVR     +  I+LVG K
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTK 123
Query: 124 TDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 124 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 3/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+  D   + +  +     LQ+ DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I              RQS        +++   +G    + I+LVGNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+V   E EA +R     F+ETSAK   N+K
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 11  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 69
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 70  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 128
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 129 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 165

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 123 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 159

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 3   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 62  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 118
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 119 HMERVISYEEGKALAESWNAAFLESSAK 146

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/148 (33%), Positives = 77/148 (52%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 8   KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 67  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 123
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 12  KCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQED 70
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S+ N  +KW  EVR    S  II LVG K DL   
Sbjct: 71  YDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPII-LVGTKLDLRDD 129
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E++ V ++E SA
Sbjct: 130 KDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSA 166

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 5   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 63
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 64  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 122
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 123 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 3/150 (2%)
Query: 7   LAKY-KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           L +Y K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L DT
Sbjct: 21  LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDT 79
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT 124
           AGQ+ +  L  S+I                SF        ++    G + V +VLVGNK 
Sbjct: 80  AGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKA 139
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL  +R+V   EG+  +      F+E+SA+
Sbjct: 140 DLSPEREVQAVEGKKLAESWGATFMESSAR 169

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 3   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 62  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 120
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 121 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 163

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFXPNVPIILVGNKK 139
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 140 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 4   AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 62
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 63  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 121
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 122 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 164

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +     Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 64  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 122
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 123 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 8   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 66
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 67  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 125
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 126 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 90
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N  +KW  EVR     +  I+LVG K DL   
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 186

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 1   GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 59
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK+
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKS 119
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 148

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P+ ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L 
Sbjct: 1   GPLGSMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLD 59
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLV 120
           + DTAG E + ++   Y+R              +SF +  ++ +++ R +   DV +VLV
Sbjct: 60  ILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLV 119
Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           GNK DL   R V   + +  +R   + +IETSAK
Sbjct: 120 GNKCDLA-ARTVESRQAQDLARSYGIPYIETSAK 152

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 3/131 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 22  SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDT 80
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW+ EV+     +V I+LV NK 
Sbjct: 81  AGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANKK 139
Query: 125 DLVEKRQVSIE 135
           DL     V  E
Sbjct: 140 DLRSDEHVRTE 150

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + D
Sbjct: 6   GSMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK
Sbjct: 65  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 124
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
            DL   R V   + +  +R   + +IETSAK
Sbjct: 125 CDLA-ARTVESRQAQDLARSYGIPYIETSAK 154

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E+F S+   YI+             +QSF +     D++ R +R   V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKA 155
           L  +R+VS  EG A + E    F+ETSAK+
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKS 149

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%), Gaps = 8/148 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+  LG +SVGK+S+  +F+  +F ++   TI   F +K + +  +   LQL DTAGQ+ 
Sbjct: 6   KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           +     +Y                +SF    +   K +D V   +   + I+LVGNK DL
Sbjct: 65  YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ---IPIMLVGNKKDL 121
Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAK 154
             +R +S EEG+A +   N  F+E+SAK
Sbjct: 122 HMERVISYEEGKALAESWNAAFLESSAK 149

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  +    ++E SAK
Sbjct: 120 DLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 162

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%), Gaps = 3/151 (1%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + D
Sbjct: 5   SDMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILD 63
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNK 123
           TAGQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK
Sbjct: 64  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNK 123
Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
            DL   R V   + +  +R   + +IETSAK
Sbjct: 124 CDLA-ARTVESRQAQDLARSYGIPYIETSAK 153

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AGQE + ++   Y+R              +SF + + + +++ R +   DV +VLVGNK 
Sbjct: 77  AGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++    ++   + FIETSAK
Sbjct: 137 DL-PTRTVDTKQAHELAKSYGIPFIETSAK 165

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 16/163 (9%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +  L P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL------------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
           DL            +++  V  EEG   +  ++   ++E SAK
Sbjct: 120 DLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 162

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG   +  +    ++E SAK
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 77/150 (51%), Gaps = 3/150 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT
Sbjct: 18  GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDT 76
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKT 124
           AG E + ++   Y+R              +SF +   + +++ R +   DV +VLVGNK 
Sbjct: 77  AGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 136
Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           DL   R V  ++ +  +R   + FIETSAK
Sbjct: 137 DL-PSRTVDTKQAQDLARSYGIPFIETSAK 165

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 122
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG   +  +    ++E SAK
Sbjct: 123 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 160

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L L+DTAGQE 
Sbjct: 20  KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQED 78
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   +W+ E++ E   +V  +L+G + DL   
Sbjct: 79  YDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLLIGTQIDLRDD 137
Query: 127 ---------VEKRQVSIEEGEAKSRELN-VMFIETSA 153
                    ++++ + +E+G+  ++E+    ++E SA
Sbjct: 138 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           A  + KLV +GD + GKT ++  F  D+F   Y  T+  ++++  + ++ + V L LWDT
Sbjct: 2   AAIRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVAD-IEVDGKQVELALWDT 60
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKT 124
           AGQE +    P                   S  N   KW  EV+     +V I+LVGNK 
Sbjct: 61  AGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKK 119
Query: 125 DL 126
           DL
Sbjct: 120 DL 121

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK ++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 16/164 (9%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           +SA+   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+
Sbjct: 5   ISAMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLF 63
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGN 122
           DTAGQE +  L P                   SF N   KW+ E+ T        +LVG 
Sbjct: 64  DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGT 122
Query: 123 KTDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
           + DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 QIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F   Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTE-IDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F   Y  TI   +L  T  ++++   L +
Sbjct: 7   PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTE-IDNQWAILDV 65
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 66  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 125
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 126 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 158

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 3/158 (1%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
           VS  + YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++
Sbjct: 2   VSDESVYKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVY 59
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
           D   Q+  R L    +              + SF   S+   ++R  R +D V I+LVGN
Sbjct: 60  DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGN 119
Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           K+DLV  R+VS++EG A +   +  FIETSA    N++
Sbjct: 120 KSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQ 157

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P                 R SF N S KW  E++    +    VLVG K DL + 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 142
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
               V+ +EG+   ++L  V +IE S  AK G N
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 60
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
             R L    +              + SF   S+   ++R  R +D V I+LVGNK+DLV 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N++
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQ 152

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGN+ D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++    ++   ++  +A        +++ ++     L ++D   Q+
Sbjct: 8   YKVLLLGAPGVGKSALAR--IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD 65
Query: 70  RFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
             R L    +              + SF   S+   ++R  R +D V I+LVGNK+DLV 
Sbjct: 66  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 125
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N++
Sbjct: 126 SREVSVDEGRACAVVFDCKFIETSAALHHNVQ 157

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  +I  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 8/154 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 24  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 82
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P                 R SF N S KW  E++    +    VLVG K DL + 
Sbjct: 83  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDT-AKTVLVGLKVDLRKD 141
Query: 129 -KRQVSIEEGEAKSRELN-VMFIETS--AKAGFN 158
               V+ +EG+   ++L  V +IE S  AK G N
Sbjct: 142 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 175

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 3   PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQL 62
           P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L +
Sbjct: 12  PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIE-DSYRKHTEIDNQWAILDV 70
Query: 63  WDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVG 121
            DTAGQE F ++   Y+R             + SF +  ++   + R +      ++LV 
Sbjct: 71  LDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVA 130
Query: 122 NKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 131 NKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTG 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + +  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++      +F   Y  T+  ++++  + ++ R V L LWDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVAD-VEVDGRRVELALWDTAGQED 70
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P                   S  N   KWI EV       V I+LVG K DL   
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKVDLRND 129
Query: 130 RQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
            Q            V+ +EG++ + ++    + E SAK G+ ++
Sbjct: 130 PQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVR 173

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 16/164 (9%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   ++   + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMV-NLQVKGKPVHLHIWDTAGQDD 94
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P +                 SF N  ++W  EV       V I++VG KTDL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-NHFCKKVPIIVVGCKTDLRKD 153
Query: 130 RQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +             V+   G+  +R +  V ++E SA+   N+ 
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E 
Sbjct: 157 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLED 215
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF +  +KW  EVR     +  I+LVG K DL   
Sbjct: 216 YDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 274
Query: 127 ---VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G+E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DT 
Sbjct: 1   MTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTT 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE   ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++     L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           GQE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
            QE + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  AQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 35/176 (19%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65
Query: 71  FRSLIP-SYIRXXXXXXXXXXXXXRQ------------------SFLNT-SKWIDEVRTE 110
           +  L P SY +              +                  SF N  +KW  EVR  
Sbjct: 66  YDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-H 124
Query: 111 RGSDVIIVLVGNKTDL------VEKRQ------VSIEEGEAKSRELN-VMFIETSA 153
              +  I+LVG K DL      +EK +      ++  +G A ++E+  V ++E SA
Sbjct: 125 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 180

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV +GD + GKT ++     D+F   Y  T+  ++++  + ++ + V L LWDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   S  N   KW  EV+     +V I+LVGNK DL   
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLRND 127
Query: 127 ---------VEKRQVSIEEGEAKSRELNVM-FIETSAK 154
                    +++  V  EEG   +  +    ++E SAK
Sbjct: 128 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAK 165

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 1   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 59
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 60  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 118
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 119 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 2   SHMQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 60
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 61  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 119
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 120 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 162

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 6   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 64
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 65  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 123
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 124 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 160

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTA 59
Query: 67  GQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTD 125
           G E + ++   Y+R              +SF +  ++ +++ R +   DV +VLVGNK D
Sbjct: 60  GGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L   R V   + +  +R   + +IETSAK
Sbjct: 120 LA-ARTVESRQAQDLARSYGIPYIETSAK 147

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 15  KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 73
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 74  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 132
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 133 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 169

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 65
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 66  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 124
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 125 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 161

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 71/157 (45%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           S +   K V +GD +VGK  ++  +  +KF + Y  T+  D  + T+ +      L L+D
Sbjct: 6   SGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 64
Query: 65  TAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P                   SF N   KW+ E+ T        +LVG +
Sbjct: 65  TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQ 123
Query: 124 TDL------VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
            DL      +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 124 IDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 166

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 22  KTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRX 81
           K+S++ RF+   F +TY  TI  D   + +  +     LQ+ DT G  +F ++    I  
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82  XXXXXXXXXXXXRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVSIEEGEA 139
                       +QS          +   +GS  D+ ++LVGNK D  + R+V   E +A
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQA 138
Query: 140 KSRELNVMFIETSAKAGFNIK 160
            ++E    F+ETSAK  +N+K
Sbjct: 139 VAQEWKCAFMETSAKMNYNVK 159

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 8/158 (5%)
Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           ++A  + K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D TV ++
Sbjct: 15  ITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVE 74
Query: 62  LW--DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWID---EVRTERGSDVI 116
           L+  DTAG + ++  I  Y                +SF +   W +     R +R   + 
Sbjct: 75  LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 117 IVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSA 153
            VLV NKTDL  +R QV ++  +  +    + F + SA
Sbjct: 135 AVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSA 172

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y   +  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LG+  VGK+++   F   + DN ++     D   + + ++   V L ++D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 132
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 133 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 165

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +K  + Y  T+  D  + T+ +      L L+DTAGQE 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 9   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 67
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 68  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 126
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 127 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 163

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 16/157 (10%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAG E 
Sbjct: 5   KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGLED 63
Query: 71  FRSLIPSYIRXXXXXXXXXXXXXRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDL--- 126
           +  L P                   SF N   KW+ E+ T        +LVG + DL   
Sbjct: 64  YDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEI-THHCPKTPFLLVGTQIDLRDD 122
Query: 127 ---VEK------RQVSIEEGEAKSRELN-VMFIETSA 153
              +EK      + ++ E  E  +R+L  V ++E SA
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA 159

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 4   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 62
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 63  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 120
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 121 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 3   APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 61
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 62  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 119
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 120 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78
Query: 62  LWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTS--KWIDEVRTERGSDVIIVL 119
           LWDT+G   + ++ P                 R   ++++  KW  E+  +      ++L
Sbjct: 79  LWDTSGSPYYDNVRP-LCYSDSDAVLLCFDISRPETVDSALKKWRTEI-LDYCPSTRVLL 136
Query: 120 VGNKTDL------------VEKRQVSIEEGEAKSRELNV-MFIETSA 153
           +G KTDL             ++  +S E+G A +++L   +++E SA
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 2/153 (1%)
Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70  RFRSLIPSY-IRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
                +  + ++             R+SF    + +  +R  R   D+ ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143
Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 86
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 87  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 143
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 144 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 184

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 66  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 122
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 123 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 163

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 23  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 81
Query: 69  ERFRSLIP-SYIRXXXXXXXXXXXXXRQSFLNT--SKWIDEVRTERGSDVIIVLVGNKTD 125
             + ++ P SY               R   L++   KW  E++ E   +  ++LVG K+D
Sbjct: 82  PYYDNVRPLSY--PDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSD 138
Query: 126 -------LVE---KRQ--VSIEEGEAKSRELNVM-FIETSA 153
                  LVE    RQ  VS ++G   ++++    +IE SA
Sbjct: 139 LRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA 179

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLWDT 65
           KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +WD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66  AGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGNKT 124
           AG+E F S  P +                Q+ ++  K W+  ++  R S   ++LVG   
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGTHL 120
Query: 125 DLVEKRQ 131
           D+ +++Q
Sbjct: 121 DVSDEKQ 127

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN--TYQATIGIDFLSKTMYLEDRTVR---LQLW 63
           + KL  +G+   GKT+++ +    K  +     AT+GID     + + D+  R   L +W
Sbjct: 2   RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 64  DTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
           D AG+E F S  P +                Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKA-RASSSPVILVGT 120
Query: 123 KTDLVEKRQ 131
             D+ +++Q
Sbjct: 121 HLDVSDEKQ 129

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 16  ELRLLMLGLDNAGKTTILKKFNGEDID-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 70
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 71  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 129

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 6/119 (5%)
Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D T   T+G +   KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI--KT--LEHRGFKLNIWDVGGQ 72
Query: 69  ERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDL 126
           +  RS   +Y               RQ   +  + +  +   ER +   +++  NK DL
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 1  MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
          + P  +  + +L  +G Q  GKT+ +      +F+     T+G +    T       V +
Sbjct: 14 LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTI 69
Query: 61 QLWDTAGQERFRSLIPSYIR 80
          +LWD  GQ RFRS+   Y R
Sbjct: 70 KLWDIGGQPRFRSMWERYCR 89

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 5/127 (3%)
Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           + P  +  + +L  +G Q  GKT+ +      +F      T+G +    T       V +
Sbjct: 14  LVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTI 69
Query: 61  QLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLV 120
           ++WD  GQ RFRS+   Y R             R+    +   +  +  +     I VLV
Sbjct: 70  KIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLV 129
Query: 121 -GNKTDL 126
            GNK DL
Sbjct: 130 LGNKRDL 136

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF 71
           L  LG +  GK+++  +F+  +F + Y   +  D  S    ++ + V L++ DTA  +  
Sbjct: 24  LAILGRRGAGKSALTVKFLTKRFISEYDPNLE-DTYSSEETVDHQPVHLRVMDTADLDTP 82
Query: 72  RSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVR---TERGSDVIIVLVGNKTDLVE 128
           R+    Y+              RQSF ++S +++ +     E    +  +L+GNK D+ +
Sbjct: 83  RN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141
Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGF 157
            RQV+  EG A +     +F E SA   F
Sbjct: 142 YRQVTKAEGVALAGRFGCLFFEVSACLDF 170

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
          +L  +G Q  GKT+ +      +F+     T+G +    T       V ++LWD  GQ R
Sbjct: 33 ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPR 88
Query: 71 FRSLIPSYIR 80
          FRS+   Y R
Sbjct: 89 FRSMWERYCR 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	3e-96
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-91
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	3e-90
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	6e-90
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	6e-86
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-84
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-84
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	9e-77
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	6e-75
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	9e-75
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-73
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-72
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-72
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	5e-71
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-71
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-70
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-70
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	7e-70
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	7e-70
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-70
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-69
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	2e-69
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-69
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-69
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	4e-69
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-69
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-69
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	6e-69
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-69
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	9e-69
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-68
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-68
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-68
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	6e-68
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	8e-68
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-67
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-67
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-67
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-67
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	7e-67
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	9e-67
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-66
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-65
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-65
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	4e-65
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	2e-64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-64
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	8e-64
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	2e-63
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-63
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-62
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-62
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-61
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-60
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-59
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	7e-59
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-58
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	5e-58
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-57
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-57
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-57
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-56
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	9e-56
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-55
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-50
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-48
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	5e-47
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	3e-42
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	2e-41
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-41
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	4e-41
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	6e-41
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-40
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-39
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-39
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-38
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	5e-38
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-37
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-36
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-24
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-24
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	7e-17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-14
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-13
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	4e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	4e-12
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	5e-12
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	6e-12
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	8e-12
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-11
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	4e-11
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-11
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	7e-11
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	8e-11
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-10
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	2e-10
2ged_A	193	SR-beta, signal recognition particle receptor beta	7e-10
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-10
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-07
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	6e-07
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	6e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	6e-04
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	9e-04

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  276 bits (709), Expect = 2e-96
 Identities = 130/156 (83%), Positives = 145/156 (92%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWD
Sbjct: 12  NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 71

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFRSLIPSYIRDS+VAVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKT
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVK 167

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  275 bits (705), Expect = 3e-96
 Identities = 131/154 (85%), Positives = 144/154 (93%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           L K+KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQERFRSLIPSYIRDS+VAVVVYD+ +  SF  TSKWID+VRTERGSDVII+LVGNKTDL
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +KRQVS EEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVK 165

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  263 bits (674), Expect = 2e-91
 Identities = 61/160 (38%), Positives = 98/160 (61%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           +   SA+ + K+  LGD  VGK+SI+ RF+ D FD+    TIG  F++KT+   +   + 
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKF 74

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
            +WDTAGQERF SL P Y R S+ AV+VYD+  + SF    KW+ E++     ++++ + 
Sbjct: 75  LIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIA 134

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           GNK DL + R+V +++ +  +  +  + +ETSAK   NI+
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIE 174

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  262 bits (671), Expect = 4e-91
 Identities = 62/152 (40%), Positives = 103/152 (67%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLV LGD   GK+S++ RF+ D+F    ++TIG  F S+T+ + D TV+ ++WDTAGQ
Sbjct: 12  NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ER+ SL P Y R ++ A++V+DV ++ SF    KW+ E++ +   ++++ L GNK+DL++
Sbjct: 72  ERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLD 131

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+V+ E+ +  ++E  + F+ETSAK   N+K
Sbjct: 132 ARKVTAEDAQTYAQENGLFFMETSAKTATNVK 163

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  259 bits (665), Expect = 3e-90
 Identities = 60/156 (38%), Positives = 94/156 (60%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SAL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WD
Sbjct: 2   SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAG ERFR+L P Y R S+ A++VYD+   ++F     W+ E+R      +++ + GNK 
Sbjct: 62  TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKC 121

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 122 DLTDVREVMERDAKDYADSIHAIFVETSAKNAININ 157

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  258 bits (662), Expect = 6e-90
 Identities = 62/156 (39%), Positives = 105/156 (67%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           + + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WD
Sbjct: 2   NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT 124
           TAGQER+ SL P Y R +  A+VVYD+ + +SF     W+ E++ +   +++I L GNK 
Sbjct: 62  TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL  KR V  +E ++ + + +++F+ETSAK   N+ 
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  248 bits (636), Expect = 6e-86
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y RDS+ A++VYD+    SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VSI+E E+ +  +      TSAK    I+
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIE 157

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  243 bits (624), Expect = 4e-84
 Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            F ++  +Y R +   V+V+    R+SF   S W ++V  E   D+   LV NK DL++ 
Sbjct: 66  EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDD 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +  EE E  ++ L + F  TS K   N+ 
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 155

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  244 bits (625), Expect = 4e-84
 Identities = 53/158 (33%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAG 67
           + K+V LGD + GKTS+ T F  + F   Y+ TIG+DF  + + L     V LQ+WD  G
Sbjct: 6   QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKT 124
           Q     ++  YI  +   ++VYD+ + QSF N   W   + +V  E  +  ++ LVGNK 
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC 162
           DL   R +  E+     +E        SAK G ++ +C
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  226 bits (579), Expect = 9e-77
 Identities = 58/155 (37%), Positives = 91/155 (58%), Gaps = 4/155 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W DE           +   V++GNK D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  ++  +         + N+ + ETSAK   N++
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  222 bits (567), Expect = 6e-75
 Identities = 64/157 (40%), Positives = 90/157 (57%), Gaps = 6/157 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK+V  GD +VGK+S + R   ++F     AT+G+DF  KT+ ++     LQLWDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV-- 127
           RFRS+  SY R +   +++YDV   +SFLN  +W+D +       V I+LVGNK D+   
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148

Query: 128 ----EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
                ++ V    GE  +     +F ETSAK G NI 
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV 185

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  221 bits (565), Expect = 9e-75
 Identities = 67/152 (44%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD SVGKT ++ RF    F     +TIG+DF  KT+ ++ + V+LQ+WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++ YD+  R SFL+   WI++VR   GS+++ +L+GNK+DL E 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 130 RQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           R+VS+ E ++ +   +++  IETSAK   N++
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVE 181

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  216 bits (553), Expect = 2e-73
 Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 3/157 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           +   KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQERF SL P Y R++  A+VVYDV   QSF+    W+ E+  +   D+II LVGNK D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 127 VE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++   +R+V+ EEGE  + E  ++F ETSAK G N+ 
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  216 bits (553), Expect = 1e-72
 Identities = 44/151 (29%), Positives = 82/151 (54%), Gaps = 3/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +F  L   Y   +  A++++DV SR ++ N   W  ++      ++ IVL GNK D+ ++
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 134

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +     +     R+ N+ + + SAK+ +N +
Sbjct: 135 KVK--AKSIVFHRKKNLQYYDISAKSNYNFE 163

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  215 bits (549), Expect = 4e-72
 Identities = 48/171 (28%), Positives = 88/171 (51%), Gaps = 11/171 (6%)

Query: 1   MAPVSALAKY--KLVFLGDQSVGKTSIITRFMY--DKFDNTYQATIGIDFLSKTMYLEDR 56
           + P+   A    K+  +G+ +VGK+++I+ F     KF   Y  T G++ +   + + D 
Sbjct: 10  VKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDT 69

Query: 57  TVRLQLW--DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-- 112
           TV ++L+  DTAG + ++  I  Y      A++V+DV+S +SF +   W + +++ R   
Sbjct: 70  TVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDR 129

Query: 113 -SDVIIVLVGNKTDLVEKR-QVSIEEGEAKSRELNVMFIETSAKA-GFNIK 160
              +  VLV NKTDL  +R QV ++  +  +    + F + SA   G +  
Sbjct: 130 ERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDAD 180

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  211 bits (540), Expect = 5e-71
 Identities = 60/151 (39%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+A+++SF     W  +++T    +  ++LVGNK DL ++
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  E+G   + +L   F E SAK   N+K
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVK 173

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  212 bits (542), Expect = 6e-71
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG-IDFLSKTMYLEDRTVRLQLWDTAGQ 68
           YK+  +GD  VGKT+ I R +  +F+  Y AT+G ++     +  +   ++  +WDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E+   L   Y   +S A++ +DV SR +  N ++W+ E +   G++  IV+  NK D+  
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++++S +      +  N  + E SAK   N  
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFG 163

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  210 bits (536), Expect = 1e-70
 Identities = 39/155 (25%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
             +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   
Sbjct: 1   GVFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWE 60

Query: 68  QERFRSLIPS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           Q      +    ++     ++V+ V  R+SF    + +  +R  R    + ++LVGNK+D
Sbjct: 61  QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L   R+VS+EEG   +  L+   IETSA    N +
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  209 bits (535), Expect = 5e-70
 Identities = 63/151 (41%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R S   ++VYDV  ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVE 159

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  209 bits (533), Expect = 7e-70
 Identities = 62/151 (41%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   +VVYDV  ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 184

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  208 bits (532), Expect = 7e-70
 Identities = 55/151 (36%), Positives = 104/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + +  + FIETSA    N++
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVE 180

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  208 bits (532), Expect = 8e-70
 Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 7/158 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++ D+   +Q+WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W DE               V++GNK 
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128

Query: 125 DLVE-KRQVSIEEGEAKSRELNVM-FIETSAKAGFNIK 160
           D  E K+ VS +  +  ++ L  +    TSAK   N+ 
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 166

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  207 bits (530), Expect = 1e-69
 Identities = 55/151 (36%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVE 166

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  207 bits (529), Expect = 2e-69
 Identities = 57/151 (37%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++   + W+ + R     +++I+L GNK DL   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVE 161

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  207 bits (530), Expect = 2e-69
 Identities = 63/151 (41%), Positives = 95/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 177

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  207 bits (529), Expect = 2e-69
 Identities = 51/151 (33%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT++++RF  ++F +  + TIG++F ++T+ L    V+ Q+WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++V+D+   Q++    +W+ E+     + ++++LVGNK+DL + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V  EE    +    ++F+ETSA    N++
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVE 176

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  207 bits (529), Expect = 3e-69
 Identities = 57/151 (37%), Positives = 101/151 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G    GK+ ++ +F+ +KF      TIG++F S+ + +  +TV+LQ+WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++ + + W+ + RT    +++++L GNK DL  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVE 176

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  208 bits (530), Expect = 4e-69
 Identities = 55/151 (36%), Positives = 101/151 (66%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++T+ +E + ++ Q+WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +  A++VYD++   S+ N + W+ E+R     +V + L+GNK+DL   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EE +  ++E  ++F ETSA    N+ 
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVD 164

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  207 bits (528), Expect = 5e-69
 Identities = 62/151 (41%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+ ++ RF  D +  +Y +TIG+DF  +T+ L+ +T++LQ+WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R +   +VVYDV  ++SF N  +W+ E+      +V  +LVGNK DL  K
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V     +  +  L + F+ETSAK   N++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVE 167

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  206 bits (527), Expect = 5e-69
 Identities = 57/151 (37%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 156

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  206 bits (526), Expect = 6e-69
 Identities = 65/151 (43%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+ + +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS E GE  + +  + F+ETSAKA  N++
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVE 159

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  206 bits (527), Expect = 6e-69
 Identities = 57/151 (37%), Positives = 94/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   +  L   F E SAK   N+K
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVK 159

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  205 bits (525), Expect = 9e-69
 Identities = 59/151 (39%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVE 172

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  205 bits (524), Expect = 1e-68
 Identities = 57/151 (37%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  ++ V+LQ+WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ E+
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  E+G+  + +L   F E SAK   +++
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVR 174

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  205 bits (523), Expect = 2e-68
 Identities = 61/190 (32%), Positives = 95/190 (50%), Gaps = 40/190 (21%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTV--------- 58
           + YK V LG+ SVGK+SI+ R   D F      TIG  F +  + L D  +         
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65

Query: 59  ----------------------------RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD 90
                                       +  +WDTAGQER+ S++P Y R ++ A+VV+D
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125

Query: 91  VASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIE 150
           +++  +      W+++++    S+ II+LV NK D   K QV I E +  +++ N++FI+
Sbjct: 126 ISNSNTLDRAKTWVNQLKIS--SNYIIILVANKIDK-NKFQVDILEVQKYAQDNNLLFIQ 182

Query: 151 TSAKAGFNIK 160
           TSAK G NIK
Sbjct: 183 TSAKTGTNIK 192

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  204 bits (521), Expect = 3e-68
 Identities = 61/151 (40%), Positives = 96/151 (63%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGK+S++ RF  + F  +Y  TIG+DF  +T+ +    V+LQ+WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   +VVYDV S +SF+N  +W+ E+  +   DV  +LVGNK D  E+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEIN-QNCDDVCRILVGNKNDDPER 128

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + V  E+    + ++ +   ETSAK   N++
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVE 159

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  203 bits (518), Expect = 6e-68
 Identities = 62/151 (41%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 122

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ ++GEA ++EL + FIE+SAK   N+ 
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVN 153

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  203 bits (518), Expect = 8e-68
 Identities = 63/151 (41%), Positives = 98/151 (64%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           +R V  E+GE  ++E  + F+ETSAK G N+
Sbjct: 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNV 161

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  202 bits (517), Expect = 2e-67
 Identities = 55/152 (36%), Positives = 95/152 (62%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ +G + VGKTS++ RF  D F    ++T+G+DF  KT+ L  + +RLQ+WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF S+  +Y R +   ++VYD+  +++F +  KW+  +      D  ++LVGNK D    
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 130 RQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           R+++ ++GE  ++++  + F E SAK  FN+ 
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVD 178

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  203 bits (519), Expect = 2e-67
 Identities = 64/151 (42%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQLWDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYDV   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 139

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ ++GEA ++EL + FIE+SAK   N+ 
Sbjct: 140 RVVTADQGEALAKELGIPFIESSAKNDDNVN 170

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  202 bits (516), Expect = 2e-67
 Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+  VGK+++   F   + D+ ++     D   + + ++   V L ++D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  RFRSLIPS-YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
                +    ++     ++V+ V  R+SF    + +  +R  R    + ++LVGNK+DL 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+VS+EEG   +  L+   IETSA    N +
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  201 bits (514), Expect = 3e-67
 Identities = 65/164 (39%), Positives = 96/164 (58%), Gaps = 8/164 (4%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA  S+L  +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +
Sbjct: 1   MAGKSSL--FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM 58

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT----ERGSDVI 116
           Q+WDTAGQERFRSL   + R S   ++ + V   QSF N S W  E       +      
Sbjct: 59  QIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFP 118

Query: 117 IVLVGNKTDLVEKRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
            V++GNK D+  +RQVS EE +A  R+     + ETSAK   N+
Sbjct: 119 FVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  201 bits (513), Expect = 7e-67
 Identities = 63/152 (41%), Positives = 97/152 (63%), Gaps = 2/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE 128
           RFR+L PSY R +   ++VYDV  R +F+    W++E+ T    +D++ +LVGNK D  E
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-E 134

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+V   EG   +R+ +++FIE SAK    ++
Sbjct: 135 NREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 166

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  200 bits (512), Expect = 9e-67
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 2/151 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80

Query: 70  RFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
           RFR S++  Y R+    V VYD+ +  SF +   WI+E +     +D+  +LVGNK DL 
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFN 158
              QV  +  +  +   ++   ETSAK   +
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPND 171

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  201 bits (512), Expect = 2e-66
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 11/162 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++      +  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L+GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 187

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  197 bits (504), Expect = 2e-65
 Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 11/162 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVR 59
            K + LGD  VGKTS++ ++   KF++ +  T+GIDF  K +              + + 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIV 118
           LQLWDTAG ERFRSL  ++ RD+   ++++D+ + QSFLN   WI +++    S +  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L GNK+DL ++R V  EE    + +  + + ETSA  G NI 
Sbjct: 132 LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNIS 173

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  196 bits (501), Expect = 2e-65
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 3/154 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G 
Sbjct: 3   DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGS 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDL 126
            +F ++    I      ++VY + SRQS        +++   +G    + I+LVGNK D 
Sbjct: 62  HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
              R+V   E EA +R     F+ETSAK   N+K
Sbjct: 122 SPSREVQSSEAEALARTWKCAFMETSAKLNHNVK 155

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  195 bits (499), Expect = 4e-65
 Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           + YK++ LG   VGK+++   F     D       G  +  +++ ++     L ++D   
Sbjct: 1   SVYKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWE 58

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDL 126
           Q+  R L    +      V+VY V  + SF   S+   ++R  R +D V I+LVGNK+DL
Sbjct: 59  QDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDL 118

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           V  R+VS++EG A +   +  FIETSA    N++
Sbjct: 119 VRSREVSVDEGRACAVVFDCKFIETSAALHHNVQ 152

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  194 bits (496), Expect = 2e-64
 Identities = 38/166 (22%), Positives = 78/166 (46%), Gaps = 15/166 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNT--YQATIGIDFLSKTMYLED---RTVRLQLW 63
           + KL+ +G+   GKT+++ + M  K  +     AT+GID     + + D   R + L +W
Sbjct: 2   RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61

Query: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-WIDEVRTERGSDVIIVLVGN 122
           D AG+E F S  P ++   ++ + VYD++  Q+ ++  K W+  ++  R S   ++LVG 
Sbjct: 62  DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIK-ARASSSPVILVGT 120

Query: 123 KTDLVEKRQ---VSIEEGEAKSRELNVMFI-----ETSAKAGFNIK 160
             D+ +++Q      +  +    +     I       + +    + 
Sbjct: 121 HLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALA 166

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  193 bits (494), Expect = 6e-64
 Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 2/157 (1%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
             +   K+V LG + VGKTS+  +F+  +F   Y  T+   + SK + L      L L D
Sbjct: 20  PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVD 78

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNK 123
           TAGQ+ +  L  S+I      V+VY V S  SF        ++    G   V +VLVGNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            DL  +R+V   EG+  +      F+E+SA+     +
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQ 175

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  193 bits (492), Expect = 8e-64
 Identities = 50/153 (32%), Positives = 92/153 (60%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQ
Sbjct: 18  LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+DL 
Sbjct: 77  EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +KRQVS+EE + ++ + NV ++ETSAK   N+ 
Sbjct: 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 169

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  191 bits (488), Expect = 2e-63
 Identities = 52/155 (33%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANV 154

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  191 bits (488), Expect = 6e-63
 Identities = 48/166 (28%), Positives = 88/166 (53%), Gaps = 9/166 (5%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRF--MYDKFDNTYQATIGIDFLSKTMYLEDRTV 58
           ++  S    Y++V +G+Q VGK+++   F  ++D  D+  +     D   +T+ ++  + 
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG-EDTYERTLMVDGESA 87

Query: 59  R---LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD- 114
               L +W+  G+  +  L    ++     ++VY +  R SF   S+   ++R  R ++ 
Sbjct: 88  TIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTED 145

Query: 115 VIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + I+LVGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  189 bits (482), Expect = 2e-62
 Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           G E+F S+   YI++    ++VY + ++QSF +     D++   +  + V ++LVGNK D
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  +R+VS  EG A + E    F+ETSAK+   + 
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  188 bits (481), Expect = 4e-62
 Identities = 53/161 (32%), Positives = 83/161 (51%), Gaps = 5/161 (3%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M         K+  LG +SVGK+S+  +F+  +F ++Y  TI   F +K + +  +   L
Sbjct: 1   MPQSK---SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHL 56

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
           QL DTAGQ+ +     +Y  D +  ++VY V S +SF        ++    G   + I+L
Sbjct: 57  QLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 116

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           VGNK DL  +R +S EEG+A +   N  F+E+SAK      
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAV 157

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  188 bits (480), Expect = 4e-62
 Identities = 54/158 (34%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++A Y++V LGD  VGKTS+ + F   +  + +   +G D   +T+ ++     L + DT
Sbjct: 1   SMALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDT 59

Query: 66  AGQERFRSLIP--SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
              E+        S ++  S  V+VY +A R SF + S+   ++R    +D V I+LVGN
Sbjct: 60  WEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGN 119

Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           K DL   R+VS+EEG A +   +  FIETSA    N+ 
Sbjct: 120 KADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVA 157

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  187 bits (477), Expect = 3e-61
 Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 2/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G   VGK+++  +FMYD+F   Y+ T    +  K + L+   V++ + DTAGQE
Sbjct: 15  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQE 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVE 128
            + ++  +Y R     + V+ +   +SF  T+ + +++   +  + V  +LVGNK+DL +
Sbjct: 74  DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           KRQVS+EE + ++ + NV ++ETSAK   N+ 
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVD 165

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  184 bits (469), Expect = 2e-60
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 3/160 (1%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P      +KLV +G   VGK+++  +F+   F + Y  TI  D  +K   ++    RL
Sbjct: 2   MDP-PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
            + DTAGQE F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VL
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           VGNK DL  +RQV   E  A     +V + E SAK   N+
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNV 159

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  181 bits (461), Expect = 5e-59
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
            P   L  YKLV +GD  VGK+++  +F    F + Y  TI  D   K   ++++   L 
Sbjct: 11  VPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE-DSYLKHTEIDNQWAILD 69

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLV 120
           + DTAGQE F ++   Y+R     ++VY V  + SF +  ++   +   +  +   ++LV
Sbjct: 70  VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILV 129

Query: 121 GNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
            NK DL+  R+V+ ++G+  + + N+ +IETSAK
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAK 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  181 bits (461), Expect = 7e-59
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 4/153 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++V  G   VGK+S++ RF+   F +TY  TI   +  + +  +     LQ+ DT G  
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSH 67

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR--TERGSDVIIVLVGNKTDLV 127
           +F ++    I      ++V+ V S+QS          +        D+ ++LVGNK D  
Sbjct: 68  QFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET 127

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           + R+V   E +A ++E    F+ETSAK  +N+K
Sbjct: 128 Q-REVDTREAQAVAQEWKCAFMETSAKMNYNVK 159

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  180 bits (458), Expect = 2e-58
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 7/161 (4%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRT---VRL 60
             +  Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +   + L
Sbjct: 2   FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVL 119
            +W+  G+  +  L    ++     ++VY +  R SF   S+   ++R  R ++ + I+L
Sbjct: 62  DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           VGNK+DLV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVK 160

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  177 bits (452), Expect = 5e-58
 Identities = 45/154 (29%), Positives = 85/154 (55%), Gaps = 3/154 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F +    TI   +  K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ ++++  + SD V +VLVGNK+D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           L   R V   + +  +R   + +IETSAK    +
Sbjct: 120 L-AARTVESRQAQDLARSYGIPYIETSAKTRQGV 152

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  187 bits (476), Expect = 1e-57
 Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 12/162 (7%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL--------EDRTV 58
           L + K+  +GD   GKTS++ + + + FD     T G++ ++K            E +  
Sbjct: 39  LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98

Query: 59  RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV 118
               WD  GQE   +    ++  SSV +++ D    ++  N   W+  +  + G    ++
Sbjct: 99  LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDS---RTDSNKHYWLRHIE-KYGGKSPVI 154

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +V NK D      +  ++   +   +   F   S K G  ++
Sbjct: 155 VVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVE 196

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  176 bits (448), Expect = 5e-57
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 4   VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 63
              + +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + 
Sbjct: 16  FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDIL 74

Query: 64  DTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGN 122
           DTAGQE + ++   Y+R     + V+ + + +SF + + + ++++  + SD V +VLVGN
Sbjct: 75  DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGN 134

Query: 123 KTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           K DL   R V  ++    ++   + FIETSAK    +
Sbjct: 135 KCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGV 170

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  175 bits (447), Expect = 7e-57
 Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
              +YKLV +G   VGK+++  + + + F + Y  TI   +  K + ++  T  L + DT
Sbjct: 1   GSTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKT 124
           AGQE + ++   Y+R     + V+ + + +SF +   + ++++  + S+ V +VLVGNK 
Sbjct: 60  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKC 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
           DL   R V  ++ +  +R   + FIETSAK    +
Sbjct: 120 DL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGV 153

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  173 bits (440), Expect = 5e-56
 Identities = 46/153 (30%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI   +  K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     +++   + ++ V ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI 159
           ++R V  E+G+  +R+  N  F+E+SAK+  N+
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINV 154

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  173 bits (440), Expect = 9e-56
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 3/147 (2%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAGQ
Sbjct: 28  EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQ 86

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E        ++R     V+VYD+  R SF       + +   +    V ++LVGNK DL 
Sbjct: 87  EDTIQR-EGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD 145

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAK 154
             RQVS EEGE  + EL   F E SA 
Sbjct: 146 HSRQVSTEEGEKLATELACAFYECSAC 172

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  171 bits (435), Expect = 3e-55
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 5/149 (3%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  L  LG +  GK+++  +F+  +F + Y   +   + S    ++ + V L++ DTA  
Sbjct: 21  EVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADL 79

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW---IDEVRTERGSDVIIVLVGNKTD 125
           +  R+    Y+  +   +VVY V SRQSF ++S +   +     E    +  +L+GNK D
Sbjct: 80  DTPRN-CERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           + + RQV+  EG A +     +F E SA 
Sbjct: 139 MAQYRQVTKAEGVALAGRFGCLFFEVSAC 167

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  159 bits (404), Expect = 2e-50
 Identities = 29/155 (18%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + K+  +G+ S GK++++ R++   +     +  G  F  K + ++ ++  L + D  G 
Sbjct: 20  ELKVGIVGNLSSGKSALVHRYLTGTYVQEE-SPEGGRF-KKEIVVDGQSYLLLIRDEGGP 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLV 127
              +     +       V V+ +    SF     +   + + R +  + +VLVG +  + 
Sbjct: 78  PELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAIS 132

Query: 128 E--KRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
               R +        S +L    + ET A  G N+
Sbjct: 133 AANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  153 bits (390), Expect = 2e-48
 Identities = 31/161 (19%), Positives = 64/161 (39%), Gaps = 13/161 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + +L  LGD   GK+S+I RF+   +    + T   +   K M ++ +T  + + +
Sbjct: 3   RSIPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES-EQYKKEMLVDGQTHLVLIRE 60

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-----VIIVL 119
            AG    +     +   +   + V+ +    SF   S+   ++ + RG       + +V 
Sbjct: 61  EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115

Query: 120 VGNKTDLVEKRQVSIEEGEA-KSRELNVMFIETSAKAGFNI 159
             ++      R V      A  +      + ET A  G N+
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  150 bits (382), Expect = 5e-47
 Identities = 52/154 (33%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD +VGKT ++  F   +    Y  T+  +F S  M  ++    L LWDTAGQE 
Sbjct: 25  KIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEE 83

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P    DS V ++ + V +R SF N ++KW  E++         VLVG K DL + 
Sbjct: 84  YDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIK-HYIDTAKTVLVGLKVDLRKD 142

Query: 130 RQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
               V+ +EG+   ++L  V +IE S+ A   + 
Sbjct: 143 GSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  138 bits (349), Expect = 3e-42
 Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 14/168 (8%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
           SA    K V +GD +VGKT ++  +  + F   Y  T+  +F S  + +   TV L LWD
Sbjct: 4   SASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWD 62

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P   R + V ++ + + S+ S+ N + KWI E++      V IVLVG K
Sbjct: 63  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK-HYAPGVPIVLVGTK 121

Query: 124 TDLVEKRQ----------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
            DL + +Q          ++  +GE   + +    +IE S+K+  N+K
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVK 169

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  137 bits (346), Expect = 2e-41
 Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           + +S     K V +GD +VGKT ++  +  +KF   Y  T+  D  S  + ++ + V L 
Sbjct: 2   SHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLG 60

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLV 120
           LWDTAGQE +  L P   R + + V+ + + S+ S+ N   KW+ E+R     +V IVLV
Sbjct: 61  LWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLV 119

Query: 121 GNKTDLVE--------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           G K DL +           ++  +GE   +++    +IE S+K   N+K
Sbjct: 120 GTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  136 bits (344), Expect = 3e-41
 Identities = 50/164 (30%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 32  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQED 90

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P     + V ++ + + S  SF N  +KW  EVR     +  I+LVG K DL + 
Sbjct: 91  YDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 149

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                         ++  +G A ++E+  V ++E SA     +K
Sbjct: 150 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 193

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  136 bits (343), Expect = 4e-41
 Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 16/166 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++  F  D+F   Y  T+  +     + ++ + V L LWDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
           E +  L P    D+ V ++ + + S  S  N   KW  EV+     +V I+LVGNK DL 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK-HFCPNVPIILVGNKKDLR 142

Query: 128 E------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +            +  V  EEG   +  ++   ++E SAK    ++
Sbjct: 143 QDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVR 188

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  136 bits (343), Expect = 6e-41
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +GD   GKTS++  F    F  +Y  T+   +    + ++ + V L +WDTAGQ+ 
Sbjct: 36  KVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDD 94

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           +  L P +  D+SV ++ +DV S  SF N  ++W  EV       V I++VG KTDL + 
Sbjct: 95  YDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN-HFCKKVPIIVVGCKTDLRKD 153

Query: 130 RQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           +             V+   G+  +R +  V ++E SA+   N+ 
Sbjct: 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVH 197

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  133 bits (336), Expect = 5e-40
 Identities = 53/173 (30%), Positives = 82/173 (47%), Gaps = 16/173 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           A  +     K V +GD +VGKTS++  +  + +   Y  T   D  S  + ++ R VRLQ
Sbjct: 13  AGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQ 71

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLV 120
           L DTAGQ+ F  L P    ++ + ++ + V S  SF N   KW+ E+R        I+LV
Sbjct: 72  LCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR-CHCPKAPIILV 130

Query: 121 GNKTDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
           G ++DL E  +            V  E  +  + E+    +IE SA    N+K
Sbjct: 131 GTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLK 183

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  131 bits (332), Expect = 1e-39
 Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L LWDT+G 
Sbjct: 7   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 65

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLV 127
             + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++LVG K+DL 
Sbjct: 66  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLLVGCKSDLR 124

Query: 128 E------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158
                        +  VS ++G   ++++    +IE SA    N
Sbjct: 125 TDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  132 bits (334), Expect = 1e-39
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 16/170 (9%)

Query: 5   SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWD 64
            ++ + KLV +GD + GKT ++  F  D+F   Y  T+  ++    + ++ + V L LWD
Sbjct: 21  QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY-VADIEVDGKQVELALWD 79

Query: 65  TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNK 123
           TAGQE +  L P    D+ V ++ + V S  S  N   KW+ EV+     +V I+LV NK
Sbjct: 80  TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK-HFCPNVPIILVANK 138

Query: 124 TDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
            DL                 V  ++G A +  +    ++E SAK    ++
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVR 188

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  127 bits (321), Expect = 5e-38
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 16/164 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE 
Sbjct: 7   KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQED 65

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVE- 128
           +  L P     + V+++ + + S  SF N  +KW  EVR     +  I+LVG K DL + 
Sbjct: 66  YDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDD 124

Query: 129 -----------KRQVSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                         ++  +G A ++E+  V ++E SA     +K
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  127 bits (322), Expect = 5e-38
 Identities = 47/187 (25%), Positives = 87/187 (46%), Gaps = 22/187 (11%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVL 119
            L+DTAGQE +  L P     + V ++ + V +  SF N   +W+ E++ E   +V  +L
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK-EYAPNVPFLL 127

Query: 120 VGNKTDLVEKRQ------------VSIEEGEAKSRELN-VMFIETSAKAGFNIK------ 160
           +G + DL +  +            + +E+G+  ++E+    ++E SA     +K      
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEA 187

Query: 161 VCLMLHP 167
           +  +L P
Sbjct: 188 IIAILTP 194

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  126 bits (317), Expect = 4e-37
 Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           M P   + K K+V +GD   GKT+++  F  D F   Y  T+  ++ + +  ++ + + L
Sbjct: 21  MDPNQNV-KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIEL 78

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVL 119
            LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E++ E   +  ++L
Sbjct: 79  SLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ-EFCPNTKMLL 137

Query: 120 VGNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAKAGFN 158
           VG K+DL              +  VS ++G   ++++    +IE SA    N
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  124 bits (313), Expect = 2e-36
 Identities = 45/174 (25%), Positives = 86/174 (49%), Gaps = 17/174 (9%)

Query: 2   APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQ 61
           AP   +A+ KLV +GD   GKT+++     D +  TY  T+  ++ +  +  E++ V L 
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELS 78

Query: 62  LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLV 120
           LWDT+G   + ++ P    DS   ++ +D++  ++  +   KW  E+  +      ++L+
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPSTRVLLI 137

Query: 121 GNKTDLVE------------KRQVSIEEGEAKSRELN-VMFIETSAKAG-FNIK 160
           G KTDL              +  +S E+G A +++L   +++E SA     +I 
Sbjct: 138 GCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIH 191

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 94.7 bits (235), Expect = 2e-24
 Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 66/209 (31%)

Query: 16  GDQSVGKTSIITRFMYDKFDNTYQATI----GIDFLSKTM--------------YLEDRT 57
           G   +GK+ +  RF+    D  +          DF  + +                +   
Sbjct: 35  GQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94

Query: 58  VRLQLW-------DTAGQERFRSLIPSYIRDSSV-------------------------- 84
            ++ +        D   Q    + +  YI+ ++                           
Sbjct: 95  CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQK 154

Query: 85  -----------AVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR 130
                       ++  DV+    ++F +  K++  +  +       IV+V  K D   +R
Sbjct: 155 QMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER 214

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNI 159
            +      A S++ N+  +ETSA++  N+
Sbjct: 215 YIRDAHTFALSKK-NLQVVETSARSNVNV 242

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 95.8 bits (238), Expect = 2e-24
 Identities = 50/165 (30%), Positives = 81/165 (49%), Gaps = 16/165 (9%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDL-- 126
            +  L P     + V ++ + + S  SF +  +KW  EVR     +  I+LVG K DL  
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRD 273

Query: 127 --------VEKRQ--VSIEEGEAKSRELN-VMFIETSAKAGFNIK 160
                    EK+   ++  +G A ++E+  V ++E SA     +K
Sbjct: 274 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 318

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 73.2 bits (180), Expect = 7e-17
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 23/171 (13%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-----------TIGIDFLSKTM-YLEDR 56
            +K+V+ G    GKT+ + +++Y K     +            T+  DFL   +  ++  
Sbjct: 14  NFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGF 72

Query: 57  TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD------VASRQSFLNTSKWIDEVRTE 110
             R  L+   GQ  + +     +R     V V D       A+ +S  N  + + E    
Sbjct: 73  KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT 132

Query: 111 RGSDVIIVLVGNKTDLVEKRQVSIEE-GEAKSRELNVMFIETSAKAGFNIK 160
                I++ V NK DL     + +E        E     +E  A  G  + 
Sbjct: 133 LDDVPIVIQV-NKRDL--PDALPVEMVRAVVDPEGKFPVLEAVATEGKGVF 180

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 65.0 bits (158), Expect = 8e-14
 Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 14/145 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           K +++ +G +  GK+SI     +    N     ++T  I    K        V  Q+WD 
Sbjct: 20  KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIY---KDDISNSSFVNFQIWDF 76

Query: 66  AGQERFRSL---IPSYIRDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLV 120
            GQ  F           R +   + V D      ++       + +           V +
Sbjct: 77  PGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFI 136

Query: 121 GNKTDLV--EKRQVSIEEGEAKSRE 143
            +K D +  + +  +  +   ++ +
Sbjct: 137 -HKVDGLSDDHKIETQRDIHQRAND 160

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 65.0 bits (158), Expect = 3e-13
 Identities = 31/148 (20%), Positives = 55/148 (37%), Gaps = 15/148 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
             KL+ +G    GK+S+ +    +          ATI ++            + L LWD 
Sbjct: 3   GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRF---LGNMTLNLWDC 59

Query: 66  AGQERF-----RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIV 118
            GQ+ F             +   V + V+DV S +   +   +   ++  R    D  I 
Sbjct: 60  GGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIF 119

Query: 119 LVGNKTDLV--EKRQVSIEEGEAKSREL 144
           ++ +K DLV  +KR+   +       E 
Sbjct: 120 VLLHKMDLVQLDKREELFQIMMKNLSET 147

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 36/167 (21%), Positives = 65/167 (38%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG  F  +T  +  + ++ Q+WD  G 
Sbjct: 7   EMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIG--FNVET--VTYKNLKFQVWDLGGL 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
              R     Y  ++   + V D   R         I   ++E             I+V+ 
Sbjct: 62  TSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSELVAMLEEEELRKAILVVF 114

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK D+  ++ ++  E          K R+  +   +TSA  G  + 
Sbjct: 115 ANKQDM--EQAMTSSEMANSLGLPALKDRKWQIF--KTSATKGTGLD 157

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.3 bits (147), Expect = 4e-12
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 26/165 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G  F  +   +    V ++LWD  GQ
Sbjct: 22  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRK--ITKGNVTIKLWDIGGQ 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
            RFRS+   Y R  S  V + D A ++        I+  + E        +   + ++++
Sbjct: 78  PRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNELHNLLDKPQLQGIPVLVL 130

Query: 121 GNKTDLVEKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
           GNK DL        + E       + RE+       S K   NI 
Sbjct: 131 GNKRDLPGALDEKELIEKMNLSAIQDREICCY--SISCKEKDNID 173

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 35/167 (20%), Positives = 62/167 (37%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K +++ LG  + GKTSI+ R        T   T+G     +T  L+ + +  ++WD  GQ
Sbjct: 22  KIRVLMLGLDNAGKTSILYRLHLGDVVTT-VPTVG--VNLET--LQYKNISFEVWDLGGQ 76

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
              R     Y  D+   + V D   R         +   + E             ++++ 
Sbjct: 77  TGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHELYALLDEDELRKSLLLIF 129

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK DL      S  E           +R   ++  ++S+K G  + 
Sbjct: 130 ANKQDL--PDAASEAEIAEQLGVSSIMNRTWTIV--KSSSKTGDGLV 172

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 59.9 bits (146), Expect = 6e-12
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     T+G  F  KT  LE R  +L +WD  GQ
Sbjct: 18  ELRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLG--FNIKT--LEHRGFKLNIWDVGGQ 72

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  + +  +   ER +   +++  NK DL 
Sbjct: 73  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 132

Query: 128 EKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
                + I+E       +S    +     SA  G ++ 
Sbjct: 133 GALSCNAIQEALELDSIRSHHWRI--QGCSAVTGEDLL 168

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 59.6 bits (145), Expect = 8e-12
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 29  QMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNICFTVWDVGGQ 83

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV 127
           ++ R L   Y +++   + V D   R+    ++  + ++  E    D ++++  NK D+ 
Sbjct: 84  DKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM- 142

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
               + + E          +SR   V    T A  G  + 
Sbjct: 143 -PNAMPVSELTDKLGLQHLRSRTWYVQ--ATCATQGTGLY 179

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 39/158 (24%), Positives = 74/158 (46%), Gaps = 13/158 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G  F  K+  ++ +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQG--FNIKS--VQSQGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+   E+ S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 EKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
                S I EG      + R   +     SA  G  ++
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQ--SCSALTGEGVQ 166

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 58.0 bits (141), Expect = 2e-11
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 13/157 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            +++ LG    GKT+I+ R    +   T + TIG  F  +T  L  + ++L +WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVET--LSYKNLKLNVWDLGGQT 73

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVE 128
             R     Y  D++  + V D   +      SK +  +  E    D  +++  NK D   
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ-- 131

Query: 129 KRQVSIEE-----GEAKSRELNVMFIETSAKAGFNIK 160
              +S  E        + ++ +   + +SA  G  I 
Sbjct: 132 PGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 57.2 bits (139), Expect = 4e-11
 Identities = 35/165 (21%), Positives = 68/165 (41%), Gaps = 31/165 (18%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLVGN 122
            R L   Y +++   + V D   R+        ++E R E           D ++++  N
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRER-------VNEAREELMRMLAEDELRDAVLLVFAN 109

Query: 123 KTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
           K DL     ++  E          + R   +    T A +G  + 
Sbjct: 110 KQDL--PNAMNAAEITDKLGLHSLRHRNWYIQ--ATCATSGDGLY 150

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 21  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 75

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  RS   +Y  ++   +VV D   R+    T + + ++   E      +++  NK D+ 
Sbjct: 76  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV- 134

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            K  +++ E          K  + ++      A  G  + 
Sbjct: 135 -KECMTVAEISQFLKLTSIKDHQWHIQ--ACCALTGEGLC 171

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 15/161 (9%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA-TIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           +  ++ LG  + GKT+II +       +     TIG  F  +    +  ++   ++D +G
Sbjct: 21  EVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEK--FKSSSLSFTVFDMSG 76

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE---RGSDVIIVLVGNKT 124
           Q R+R+L   Y ++    + V D + R   +   + +D +      +   + I+   NK 
Sbjct: 77  QGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKM 136

Query: 125 DLVEKRQVS-IEEG----EAKSRELNVMFIETSAKAGFNIK 160
           DL +      + +       K +  ++    + A  G  ++
Sbjct: 137 DLRDAVTSVKVSQLLCLENIKDKPWHIC--ASDAIKGEGLQ 175

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 57.3 bits (139), Expect = 7e-11
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 6/119 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+       T+     S+   L    +    +D  G 
Sbjct: 25  TGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLH--PTSEE--LTIAGMTFTTFDLGGH 79

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDL 126
            + R +  +Y+   +  V + D A  +  L + + +D +   E  ++V I+++GNK D 
Sbjct: 80  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDR 138

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.9 bits (138), Expect = 8e-11
 Identities = 34/160 (21%), Positives = 69/160 (43%), Gaps = 17/160 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T   TIG     +   +     R  +WD  GQ
Sbjct: 16  EHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIG--SNVEE--IVINNTRFLMWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLV 127
           E  RS   +Y  ++   +VV D   R+    T + + ++   E      +++  NK D+ 
Sbjct: 71  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV- 129

Query: 128 EKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            K  +++ E          K  + ++      A  G  + 
Sbjct: 130 -KECMTVAEISQFLKLTSIKDHQWHIQ--ACCALTGEGLC 166

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 13/126 (10%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM-YLEDRTVRLQLWDTAG 67
           +  ++F+G    GKT +  R +  ++ +T Q +I     S       +R   L L D  G
Sbjct: 7   QRAVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT--DSSAIYKVNNNRGNSLTLIDLPG 63

Query: 68  QERFR-SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-----VRTERGSDVIIVLV- 120
            E  R  L+  +   +   V V D A+ Q  +      +      + +    +   +L+ 
Sbjct: 64  HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVA--EFLYQVLIDSMALKNSPSLLIA 121

Query: 121 GNKTDL 126
            NK D+
Sbjct: 122 CNKQDI 127

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 32/126 (25%), Positives = 49/126 (38%), Gaps = 20/126 (15%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KL+FLG  + GKT+++     D+     Q T      S+   L    ++   +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLATL-QPTWH--PTSEE--LAIGNIKFTTFDLGGH 77

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
            + R L   Y  + +  V + D A  +         DE R E           DV  V++
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADPE-------RFDEARVELDALFNIAELKDVPFVIL 130

Query: 121 GNKTDL 126
           GNK D 
Sbjct: 131 GNKIDA 136

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 54.4 bits (131), Expect = 7e-10
 Identities = 26/130 (20%), Positives = 47/130 (36%), Gaps = 23/130 (17%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G  +
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPGHVK 103

Query: 71  FRSLIPSYIRDSSVAV--VVYDVASRQSFLNTSKWIDEVRTE----------RGSDVIIV 118
            R  +  Y++  +  V  +++ V S        K +                   + I +
Sbjct: 104 LRYKLSDYLKTRAKFVKGLIFMVDS----TVDPKKLTTTAEFLVDILSITESSCENGIDI 159

Query: 119 LV-GNKTDLV 127
           L+  NK++L 
Sbjct: 160 LIACNKSELF 169

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 54.8 bits (132), Expect = 7e-10
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 19/131 (14%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            +  ++  G Q+ GKTS++T    D    T   +     LS   Y       + L D  G
Sbjct: 11  YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQE--PLSAADY---DGSGVTLVDFPG 64

Query: 68  QERFRSLIPSYIRDSSVAV--VVY--DVASRQSFLNTSK-------WIDEVRTERGSDVI 116
             + R  +  Y++  +  V  +++  D       L T+         I E   E G D++
Sbjct: 65  HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDIL 124

Query: 117 IVLVGNKTDLV 127
           I    NK++L 
Sbjct: 125 I--ACNKSELF 133

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 36/167 (21%), Positives = 69/167 (41%), Gaps = 31/167 (18%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ +G  + GKT+I+ +    +   T   TIG  F  +T  +E + +   +WD  GQ
Sbjct: 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIG--FNVET--VEYKNISFTVWDVGGQ 219

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE--------RGSDVIIVLV 120
           ++ R L   Y +++   + V D   R+        ++E R E           D ++++ 
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRE-------RVNEAREELMRMLAEDELRDAVLLVF 272

Query: 121 GNKTDLVEKRQVSIEE-------GEAKSRELNVMFIETSAKAGFNIK 160
            NK DL     ++  E          + R  N     T A +G  + 
Sbjct: 273 ANKQDL--PNAMNAAEITDKLGLHSLRHR--NWYIQATCATSGDGLY 315

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 47.0 bits (111), Expect = 6e-07
 Identities = 23/161 (14%), Positives = 50/161 (31%), Gaps = 25/161 (15%)

Query: 12  LVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           ++ +G +  GK+SI  + ++           ++T        +       + L + +  G
Sbjct: 2   VLLMGVRRCGKSSIC-KVVFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 68  QERFRSL---IPSYIRDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNK 123
           Q  +           +     V V D      + +     I E   +    + I ++ +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 124 TDLVE-----------KRQVSIEEGEAKSRELNVMFIETSA 153
            D +             ++   E  E     + V F  TS 
Sbjct: 116 VDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSI 156

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 37.5 bits (88), Expect = 6e-04
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 20/112 (17%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV 107
           + L + DTAG        ER    R+     I  +   + + D  +    ++ ++   E 
Sbjct: 52  MPLHIIDTAGLREASDEVERIGIERAW--QEIEQADRVLFMVD-GTTTDAVDPAEIWPEF 108

Query: 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
                + + I +V NK D+  +     E             I  SA+ G  +
Sbjct: 109 IARLPAKLPITVVRNKADITGETLGMSEVNGHA-------LIRLSARTGEGV 153

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 38.3 bits (90), Expect = 6e-04
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 17/112 (15%)

Query: 58  VRLQLWDTAGQ-------ERF---RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV 107
              +L DTAG        E     RS     + ++ + + + D+ + +     ++  +  
Sbjct: 281 TMFRLTDTAGLREAGEEIEHEGIRRSR--MKMAEADLILYLLDLGTERLDDELTEIRELK 338

Query: 108 RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
                +  + V   NK D             A +       I  SA  G  I
Sbjct: 339 AAHPAAKFLTVA--NKLDRAANAD---ALIRAIADGTGTEVIGISALNGDGI 385

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 37.5 bits (87), Expect = 9e-04
 Identities = 22/160 (13%), Positives = 55/160 (34%), Gaps = 16/160 (10%)

Query: 11  KLVFLGDQSVGKTSII-TRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-- 67
            ++ LG   VGK+S + +         +     G+  +  +  +   T+ +   DT G  
Sbjct: 38  TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINI--IDTPGLV 95

Query: 68  -----QERFRSLIPSYIRDSSVAVVVY-DVASRQSF----LNTSKWIDEVRTERGSDVII 117
                  +   LI  ++ + ++ V++Y D     +           I +   +      +
Sbjct: 96  EAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTL 155

Query: 118 VLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF 157
           +++          ++S E   +K  +  +  I   +K   
Sbjct: 156 LVL-THAQFSPPDELSYETFSSKRSDSLLKTIRAGSKMRK 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	100.0
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	100.0
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	100.0
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	100.0
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	100.0
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	100.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	100.0
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	100.0
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	100.0
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	100.0
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	100.0
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	100.0
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	100.0
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	100.0
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	100.0
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	100.0
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	100.0
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	100.0
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	100.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	100.0
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	100.0
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	100.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	100.0
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	100.0
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	100.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	100.0
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	100.0
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	100.0
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	100.0
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	100.0
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	100.0
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	100.0
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	100.0
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	100.0
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	100.0
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	100.0
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	100.0
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	100.0
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	100.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	100.0
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	100.0
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	100.0
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	100.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	100.0
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	100.0
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	100.0
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	100.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	100.0
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	100.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	100.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	100.0
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	100.0
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	100.0
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	100.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	100.0
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	100.0
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	100.0
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	100.0
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	100.0
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	100.0
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	100.0
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	100.0
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	100.0
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	100.0
3llu_A	196	RAS-related GTP-binding protein C; structural geno	100.0
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	100.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	100.0
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	100.0
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	100.0
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	100.0
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	100.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.98
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.97
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.97
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.97
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.97
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.97
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.97
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.97
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.97
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.96
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.96
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.96
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.96
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.96
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.96
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.96
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.96
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.95
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.95
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.95
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.95
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.95
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.95
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.94
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.94
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.94
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.93
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.92
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.92
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.92
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.92
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.92
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.92
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.91
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.91
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.91
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.91
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.91
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.91
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.91
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.91
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.91
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.91
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.91
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.91
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.9
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.9
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.9
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.9
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.9
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.9
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.9
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.89
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.89
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.89
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.88
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.88
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.88
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.88
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.88
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.88
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.87
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.86
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.86
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.86
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.86
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.85
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.85
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.84
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.83
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.83
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.83
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.83
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.83
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.82
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.81
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.81
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.81
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.8
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.75
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.74
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.74
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.73
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.72
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.72
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.72
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.7
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.67
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.67
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.64
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.61
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.6
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.6
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.58
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.58
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.56
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.55
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.52
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.47
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.4
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.39
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.2
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.17
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.15
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.15
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.1
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.07
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.94
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.89
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.82
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.81
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.71
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.66
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.65
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.65
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.6
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.44
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.42
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.34
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.33
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.33
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.28
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.05
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.88
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.84
2xxa_A	433	Signal recognition particle protein; protein trans	97.82
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.77
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.76
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.71
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.69
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.64
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.64
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.63
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.62
1via_A	175	Shikimate kinase; structural genomics, transferase	97.61
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.6
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.59
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.59
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.59
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.58
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.57
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.57
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.56
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.55
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.55
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.54
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.53
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.49
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.49
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.49
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.47
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.47
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.47
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.46
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.44
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.43
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.43
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.43
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.42
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.42
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.42
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.41
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.41
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.41
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.4
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.4
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.39
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.39
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.39
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.39
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.38
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.38
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.38
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.37
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.36
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.36
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.36
1g6h_A	257	High-affinity branched-chain amino acid transport	97.36
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.35
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.35
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.34
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.34
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.34
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.34
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.34
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.34
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.33
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.33
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.33
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.32
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.32
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.32
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.31
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.31
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.31
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.3
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.3
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.29
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.29
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.29
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.29
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.28
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.28
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.28
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.28
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.28
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.28
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.27
3co5_A	143	Putative two-component system transcriptional RES	97.27
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.27
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.27
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.26
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.25
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.25
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.25
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.25
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.24
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.24
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.23
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.23
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.23
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.22
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.21
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.2
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.2
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.19
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.19
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.18
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.18
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.17
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.16
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.15
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.15
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.14
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.14
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.14
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.14
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.13
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.13
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.12
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.12
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.12
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.12
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.12
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.12
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.11
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.11
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.1
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.1
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.1
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.09
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.09
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.08
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.08
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.08
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.07
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.07
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.06
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.06
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.06
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.04
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.03
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.03
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.03
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.02
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.02
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.02
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.02
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.02
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.01
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.01
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.0
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.99
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.98
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.98
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.97
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.97
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.96
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.95
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.95
3bos_A	242	Putative DNA replication factor; P-loop containing	96.93
2og2_A	359	Putative signal recognition particle receptor; nuc	96.93
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.9
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.89
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.89
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.88
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.88
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.88
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.88
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.87
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.87
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.86
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.85
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.84
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.82
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.81
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.81
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.81
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.81
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.81
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.76
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.75
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.71
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.71
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.71
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.7
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.69
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.68
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.67
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.66
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.66
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.65
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.65
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.64
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.63
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.63
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.62
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.61
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.6
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.6
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.6
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.6
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.59
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.59
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.58
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.58
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.58
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.54
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.52
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.51
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.51
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.5
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.48
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.48
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.47
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.47
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.46
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.44
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	96.43
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.43
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.42
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.41
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.41
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	96.4
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.4
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.39
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.39
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.39
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.38
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	96.37
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.35
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	96.34
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	96.31
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.31
3uc9_A	233	Increased recombination centers protein 6; rossman	96.31
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.31
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.3
2qgz_A	308	Helicase loader, putative primosome component; str	96.28
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.28
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.28
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.27
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.27
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.27
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.26
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.25
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.24
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.24
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.23
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.23
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.23
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.23
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.21
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.19
2fna_A	357	Conserved hypothetical protein; structural genomic	96.16
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.16
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.15

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=6.7e-45  Score=246.16  Aligned_cols=165  Identities=78%  Similarity=1.161  Sum_probs=145.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +|++++||+++|++|+|||||++++..+.+...+.|+.+.++..+.....+..+++.+|||+|+++|..++..+++++++
T Consensus         9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~   88 (216)
T 4dkx_A            9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA   88 (216)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred             CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence            45678999999999999999999999999999999999989888888889999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +++|||+++++||+.+..|+..+.....+++|++||+||+|+.+.+.++.+++.++++++++.|++|||++|.||+++|+
T Consensus        89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~  168 (216)
T 4dkx_A           89 AVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFR  168 (216)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHH
Confidence            99999999999999999999999888888999999999999998899999999999999999999999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .|++.
T Consensus       169 ~i~~~  173 (216)
T 4dkx_A          169 RVAAA  173 (216)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=7.1e-38  Score=204.46  Aligned_cols=163  Identities=42%  Similarity=0.760  Sum_probs=148.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +.+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            56899999999999999999999998877777888877777777888889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc---cccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---RQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |||++++.+++.+..|+..+......+.|+++++||+|+.+.   ..+..+++..+++..++.++++||++|.|++++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887778999999999999765   66788889999999999999999999999999999


Q ss_pred             cCCCCC
Q 030880          165 LHPNTV  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      +|.+.+
T Consensus       162 ~l~~~i  167 (170)
T 1ek0_A          162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHH
Confidence            987754

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=3.1e-38  Score=210.33  Aligned_cols=164  Identities=36%  Similarity=0.706  Sum_probs=145.8

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      .....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            34567999999999999999999999998877777777777777777788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +++|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|+
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  176 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI  176 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999987777888999999999999999999999999999999


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|.+
T Consensus       177 ~l~~  180 (191)
T 2a5j_A          177 NTAK  180 (191)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.9e-38  Score=212.96  Aligned_cols=162  Identities=39%  Similarity=0.645  Sum_probs=149.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            45689999999999999999999999888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|++|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777888899999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       184 ~~  185 (201)
T 2ew1_A          184 AC  185 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=5.8e-38  Score=204.88  Aligned_cols=163  Identities=39%  Similarity=0.764  Sum_probs=149.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI   83 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence            45799999999999999999999998887777777777777777778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.....++.|+++|+||+|+.++..+..+++..++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i  163 (170)
T 1r2q_A           84 VVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777788889999999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       164 ~~~  166 (170)
T 1r2q_A          164 AKK  166 (170)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=100.00  E-value=1.2e-37  Score=205.52  Aligned_cols=164  Identities=38%  Similarity=0.696  Sum_probs=149.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988777777777777777777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||++++.+++.+..|+..+.....++.|+++|+||+|+.+...+..+++..+++..+++++++|+++|.|++++|++
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999998887678999999999999877788889999999999999999999999999999999


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       169 l~~~  172 (181)
T 2efe_B          169 IARR  172 (181)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=5e-38  Score=206.85  Aligned_cols=163  Identities=34%  Similarity=0.647  Sum_probs=149.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||++++.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            44579999999999999999999999988777777777777777777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..++.++++||++|.|++++|++
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  171 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998887778999999999999877778889999999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       172 l~~  174 (179)
T 1z0f_A          172 AAK  174 (179)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=100.00  E-value=8.7e-38  Score=205.72  Aligned_cols=164  Identities=80%  Similarity=1.176  Sum_probs=150.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ++..+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|++
T Consensus        11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   90 (179)
T 2y8e_A           11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA   90 (179)
T ss_dssp             -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999999888877788888788888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++|+++|.|++++|++
T Consensus        91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  170 (179)
T 2y8e_A           91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR  170 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999999877788889999999999999999999999999999999


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       171 l~~~  174 (179)
T 2y8e_A          171 VAAA  174 (179)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.8e-38  Score=212.17  Aligned_cols=162  Identities=41%  Similarity=0.725  Sum_probs=140.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            44689999999999999999999999887777777777777777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..++ .++++||++|.|++++|++
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  186 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR  186 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999999999999999887767899999999999987777888999999999999 9999999999999999999


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       187 l~~  189 (201)
T 2hup_A          187 VAT  189 (201)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=100.00  E-value=1.3e-38  Score=210.62  Aligned_cols=162  Identities=40%  Similarity=0.705  Sum_probs=120.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            45699999999999999999999998887777788887777777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777788899999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       166 ~~  167 (183)
T 2fu5_C          166 AR  167 (183)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=100.00  E-value=1.3e-37  Score=206.92  Aligned_cols=162  Identities=37%  Similarity=0.673  Sum_probs=147.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            45689999999999999999999999887777777777777777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..++.++++|+++|.|++++|++|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  179 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL  179 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777788889999999999999999999999999999998


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       180 ~~  181 (189)
T 2gf9_A          180 VD  181 (189)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=100.00  E-value=1.2e-37  Score=208.04  Aligned_cols=162  Identities=39%  Similarity=0.684  Sum_probs=151.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   93 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   93 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence            34689999999999999999999999988888888888888888888898899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+++..++...+++++++||++|.|++++|++|
T Consensus        94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  173 (196)
T 3tkl_A           94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  173 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988877789999999999998888888899999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       174 ~~  175 (196)
T 3tkl_A          174 AA  175 (196)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=100.00  E-value=1.1e-37  Score=209.83  Aligned_cols=163  Identities=39%  Similarity=0.644  Sum_probs=149.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v   84 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI   84 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence            34579999999999999999999999988877788888777777788888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  164 (206)
T 2bcg_Y           85 IIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLT  164 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999998877678999999999999887778888999999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       165 l~~  167 (206)
T 2bcg_Y          165 MAR  167 (206)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-37  Score=207.54  Aligned_cols=163  Identities=36%  Similarity=0.678  Sum_probs=149.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+....+.+||+||++++...+..+++++|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999999887777788877777777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++.++++..+++++++|+++|.|++++|++|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777788899999999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       181 ~~~  183 (192)
T 2fg5_A          181 SRQ  183 (192)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=100.00  E-value=9.4e-38  Score=206.95  Aligned_cols=162  Identities=35%  Similarity=0.647  Sum_probs=148.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++.+...+..+++++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45699999999999999999999999888777788877777777888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..++.++++||++|.|++++|++|
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999888776789999999999998777788889999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       168 ~~  169 (186)
T 2bme_A          168 AR  169 (186)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=100.00  E-value=2.5e-37  Score=201.98  Aligned_cols=163  Identities=36%  Similarity=0.674  Sum_probs=149.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.+.+.........+....+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45699999999999999999999999887777788877777777788888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+.....+..|+++|+||+|+.+.+++..+++..+++..+++++++|+++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            99999999999999999999988767889999999999998877888889999999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       164 ~~~  166 (170)
T 1z0j_A          164 SRR  166 (170)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=4.9e-38  Score=205.41  Aligned_cols=162  Identities=38%  Similarity=0.657  Sum_probs=141.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            45789999999999999999999999887777788877777777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+++.+..+++..+++..+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999999877766679999999999998877888899999999999999999999999999999998


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       164 ~~  165 (170)
T 1z08_A          164 CK  165 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=100.00  E-value=7.7e-38  Score=206.60  Aligned_cols=163  Identities=32%  Similarity=0.414  Sum_probs=145.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +..+.+||+++|++|+|||||+++|.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+
T Consensus         2 ~~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (181)
T 3t5g_A            2 PQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING   80 (181)
T ss_dssp             CCEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSE
T ss_pred             CCCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCE
Confidence            445679999999999999999999998888777777777555 6667788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      +++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  160 (181)
T 3t5g_A           81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVF  160 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHH
Confidence            9999999999999999999999877653 689999999999998888899999999999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       161 ~~l~~  165 (181)
T 3t5g_A          161 RRIIL  165 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=2.2e-37  Score=204.73  Aligned_cols=164  Identities=29%  Similarity=0.489  Sum_probs=147.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +..+.+||+++|++|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   92 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG   92 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345689999999999999999999999988877777776555 6667788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecC-CCCChHHH
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK-AGFNIKVC  162 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i~~~  162 (170)
                      +++|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..+++..+++++++|++ +|.|++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l  172 (183)
T 3kkq_A           93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT  172 (183)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence            999999999999999999999987654 4789999999999998888889999999999999999999999 99999999


Q ss_pred             hhcCCCC
Q 030880          163 LMLHPNT  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|.+.
T Consensus       173 ~~~l~~~  179 (183)
T 3kkq_A          173 FHDLVRV  179 (183)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=100.00  E-value=3.4e-37  Score=204.94  Aligned_cols=165  Identities=34%  Similarity=0.595  Sum_probs=147.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccchhhhcCCcE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~   84 (170)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++. .++..+++++|+
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~   96 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA   96 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence            3567999999999999999999999998887777887777777778888888999999999999988 888999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC---CChH
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG---FNIK  160 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~~i~  160 (170)
                      +++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++..++.++++|++++   .|++
T Consensus        97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~  176 (189)
T 1z06_A           97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVE  176 (189)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHH
Confidence            999999999999999999999998775 478999999999999877788889999999999999999999999   9999


Q ss_pred             HHhhcCCCCC
Q 030880          161 VCLMLHPNTV  170 (170)
Q Consensus       161 ~~~~~l~~~i  170 (170)
                      ++|++|++.+
T Consensus       177 ~l~~~l~~~i  186 (189)
T 1z06_A          177 AIFMTLAHKL  186 (189)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=203.80  Aligned_cols=162  Identities=38%  Similarity=0.662  Sum_probs=146.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..+++++|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            34669999999999999999999999988877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||++++++++.+..|+..+.... .+.|+++|+||+|+.+...+...++..++...+++++++|+++|.|++++|++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNC  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHC-TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999987765 58999999999999888888889999999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       165 l~~  167 (181)
T 3tw8_B          165 ITE  167 (181)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=206.06  Aligned_cols=163  Identities=31%  Similarity=0.624  Sum_probs=148.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++++...+..+++++|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34569999999999999999999999988777777777777777777888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...++.++++||++|.|++++|++
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999988776678999999999999877778889999999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       182 l~~  184 (193)
T 2oil_A          182 VLK  184 (193)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=100.00  E-value=8.7e-38  Score=208.37  Aligned_cols=165  Identities=35%  Similarity=0.636  Sum_probs=142.0

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      .+....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|
T Consensus        21 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d  100 (192)
T 2il1_A           21 RPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK  100 (192)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred             cccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence            33456789999999999999999999998887777777777777777888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++.. ++.++++||++|.|++++
T Consensus       101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  180 (192)
T 2il1_A          101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI  180 (192)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence            9999999999999999999999988877678999999999999877788888899999885 789999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |++|.+
T Consensus       181 ~~~l~~  186 (192)
T 2il1_A          181 FLKLVD  186 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=100.00  E-value=3.1e-37  Score=203.37  Aligned_cols=163  Identities=31%  Similarity=0.455  Sum_probs=145.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ++...++|+++|++|+|||||+++|.++.+...+.++.+.... .....++..+.+.+||+||++++...+..+++++|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            4567799999999999999999999999887777777765544 566778888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...++.++++|+++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            999999999999999999999885543 4689999999999998877888899999999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       164 ~~l~~  168 (181)
T 2fn4_A          164 EQLVR  168 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.7e-37  Score=208.24  Aligned_cols=162  Identities=35%  Similarity=0.657  Sum_probs=138.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45689999999999999999999998887777777777777777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+...++..+++..++.++++||++|.|++++|++|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988776789999999999998777788889999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       183 ~~  184 (200)
T 2o52_A          183 AR  184 (200)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.3e-37  Score=202.26  Aligned_cols=163  Identities=39%  Similarity=0.688  Sum_probs=139.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ....+||+++|++|+|||||+++|.++.+. ..+.++.+.+........++..+.+.+||+||++.+...+..+++++|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999998874 3556777777777777788888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.++..+..+++..+++..+++++++||++|.|++++|+
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999887767899999999999988778888899999999999999999999999999999


Q ss_pred             cCCC
Q 030880          165 LHPN  168 (170)
Q Consensus       165 ~l~~  168 (170)
                      +|.+
T Consensus       167 ~l~~  170 (180)
T 2g6b_A          167 AIAK  170 (180)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=100.00  E-value=3e-37  Score=205.58  Aligned_cols=168  Identities=36%  Similarity=0.608  Sum_probs=146.4

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEE-EEEEEECCe---------EEEEEEEeCCCccc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL-SKTMYLEDR---------TVRLQLWDTAGQER   70 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~i~D~~g~~~   70 (170)
                      |+..+....+||+++|++|+|||||+++|.++.+...+.++.+.+.. .......+.         .+.+.+||+||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            55455567799999999999999999999998887777777776666 445555554         78999999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEE
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFI  149 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  149 (170)
                      +...+..+++++|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..++...+++++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            999999999999999999999999999999999999887765 6899999999999987777888899999999999999


Q ss_pred             EEecCCCCChHHHhhcCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++|+++|.|++++|++|.+
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~  181 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLD  181 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            9999999999999998864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=100.00  E-value=6e-37  Score=205.81  Aligned_cols=162  Identities=35%  Similarity=0.639  Sum_probs=148.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   85 (203)
T 1zbd_A            6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI   85 (203)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence            35689999999999999999999999887777777777777777778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+...+..+++..+++..+++++++||++|.|++++|++|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (203)
T 1zbd_A           86 LMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERL  165 (203)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777888899999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       166 ~~  167 (203)
T 1zbd_A          166 VD  167 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=207.78  Aligned_cols=164  Identities=25%  Similarity=0.349  Sum_probs=139.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cchhhhcCCc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSS   83 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~   83 (170)
                      +....+||+++|++|+|||||+++|.+........++.+.+.....+..++..+.+.+||++|++.+.. ++..+++++|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            445679999999999999999999976443323344445556666677888899999999999988765 7788899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||++++++|+.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..++.++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            99999999999999999999999877654 57999999999999877778888999999999999999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |++|++
T Consensus       179 f~~l~~  184 (195)
T 3cbq_A          179 FEGAVR  184 (195)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=205.56  Aligned_cols=162  Identities=25%  Similarity=0.394  Sum_probs=139.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +....+||+++|++|+|||||++++.++.+...+.++.+..+ ......++..+.+.+||+||++++... ..+++++|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            345679999999999999999999999988777777776444 455667888899999999999988775 678999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec-CCCCChH
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA-KAGFNIK  160 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i~  160 (170)
                      +++|||++++++++.+..|+..+....   ..+.|+++|+||+|+.+.+.+..+++.++++..++.++++|| ++|.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999999987764   257999999999999877888889999999999999999999 8999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|++
T Consensus       175 ~lf~~l~~  182 (187)
T 3c5c_A          175 HVFHEAVR  182 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=3.8e-37  Score=200.76  Aligned_cols=161  Identities=35%  Similarity=0.622  Sum_probs=146.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            45789999999999999999999999887777888777777777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+.... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++|+++|.|++++|++|
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  161 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYL  161 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHH
Confidence            9999999999999999999987766 679999999999998777788889999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       162 ~~  163 (168)
T 1z2a_A          162 AE  163 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=100.00  E-value=3.3e-37  Score=201.41  Aligned_cols=160  Identities=39%  Similarity=0.731  Sum_probs=139.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999998877777777777777777778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||++++.+++.+..|+..+......+.|+++|+||+|+ ....+..+++..+++..+++++++|+++|.|++++|++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  160 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  160 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999999998887678999999999999 4556778889999999999999999999999999999886


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       161 ~  161 (170)
T 1g16_A          161 K  161 (170)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=100.00  E-value=1.8e-37  Score=204.15  Aligned_cols=163  Identities=32%  Similarity=0.485  Sum_probs=143.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-eEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-RTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+.+.....+...+ ..+.+.+||+||++++...+..+++++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45679999999999999999999999887766677777677777777766 67899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCe-EEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG--SDVI-IVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      +++|||++++++++.+..|+..+.....  .+.| +++|+||+|+.+.+.+..+++..+++..+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            9999999999999999999988876532  2345 899999999987777888899999999999999999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|.+
T Consensus       163 l~~~l~~  169 (178)
T 2hxs_A          163 CFQKVAA  169 (178)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3e-38  Score=210.40  Aligned_cols=163  Identities=35%  Similarity=0.647  Sum_probs=149.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  100 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI  100 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence            35689999999999999999999998887777777777777777777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..+++..++.++++|+++|.|++++|++|
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (191)
T 3dz8_A          101 LMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERL  180 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999988777789999999999998888888999999999999999999999999999999988


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       181 ~~~  183 (191)
T 3dz8_A          181 VDA  183 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-37  Score=209.68  Aligned_cols=162  Identities=35%  Similarity=0.653  Sum_probs=139.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|++|
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45689999999999999999999999887777788777777777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..+++..++.++++||++|.|++++|++|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988766789999999999998777788889999999999999999999999999999987


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       171 ~~  172 (223)
T 3cpj_B          171 IN  172 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=100.00  E-value=5.6e-37  Score=199.75  Aligned_cols=161  Identities=29%  Similarity=0.505  Sum_probs=142.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +.+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            568999999999999999999999888777777766443 4556667788899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhhc
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      |||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..+++.. +++++++||++|.|++++|++
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999999887764 368999999999999887778889999999887 789999999999999999999


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       161 l~~~  164 (167)
T 1c1y_A          161 LVRQ  164 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8653

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=207.80  Aligned_cols=164  Identities=40%  Similarity=0.646  Sum_probs=135.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      .....+||+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  103 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG  103 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence            34557999999999999999999999998877777777777777777888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC------CccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV------EKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      +++|||++++.+++.+..|+..+......+.|+++|+||+|+.      ..+.+..+++..++...+++++++||++|.|
T Consensus       104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~g  183 (199)
T 2p5s_A          104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSN  183 (199)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCC
Confidence            9999999999999999999999887766789999999999996      3456778889999999999999999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|++|++
T Consensus       184 v~el~~~l~~  193 (199)
T 2p5s_A          184 IVEAVLHLAR  193 (199)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=1.4e-36  Score=199.81  Aligned_cols=163  Identities=37%  Similarity=0.609  Sum_probs=142.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      +....++|+++|++|+|||||++++.++.+...+.++.+.+........++..+.+.+||+||++++...+..+++++|+
T Consensus         3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   82 (177)
T 1wms_A            3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC   82 (177)
T ss_dssp             CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred             CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence            34567999999999999999999999998877778888878777778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCCCh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNI  159 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i  159 (170)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. .+.+..+++.++++ ..+++++++|+++|.|+
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  161 (177)
T 1wms_A           83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV  161 (177)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence            9999999999999999999999877654    678999999999996 55677888888888 66789999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|++|.+
T Consensus       162 ~~l~~~l~~  170 (177)
T 1wms_A          162 AAAFEEAVR  170 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=5.7e-37  Score=204.58  Aligned_cols=167  Identities=26%  Similarity=0.440  Sum_probs=144.0

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |+.++....+||+++|++|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++
T Consensus        10 m~~~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~   88 (194)
T 2atx_A           10 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   88 (194)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             cCCCCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcC
Confidence            4455556779999999999999999999999988777777765333 445666777889999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-
Q 030880           81 DSSVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-  146 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-  146 (170)
                      ++|++++|||++++++++.+. .|+..+.... +++|+++|+||+|+.+.            +.+..+++..+++..++ 
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  167 (194)
T 2atx_A           89 MTDVFLICFSVVNPASFQNVKEEWVPELKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGAC  167 (194)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCS
T ss_pred             CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCc
Confidence            999999999999999999987 7888887764 47999999999999753            35778899999999998 


Q ss_pred             eEEEEecCCCCChHHHhhcCCCC
Q 030880          147 MFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .++++||++|.|++++|++|.+.
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHH
Confidence            99999999999999999988653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=100.00  E-value=6.7e-37  Score=199.89  Aligned_cols=161  Identities=25%  Similarity=0.367  Sum_probs=130.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~   87 (170)
                      .+||+++|++|+|||||++++.+........++.+.+........++..+.+.+||+||++++.. .+..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999998776655555556677777777889999999999999998876 77788999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999999987764 589999999999998888889999999999999999999999999999999988


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       162 ~~~  164 (169)
T 3q85_A          162 VRQ  164 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=207.25  Aligned_cols=164  Identities=31%  Similarity=0.428  Sum_probs=139.9

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      ++....+||+++|.+|+|||||+++|.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|
T Consensus        19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   97 (201)
T 3oes_A           19 MPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVH   97 (201)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCC
T ss_pred             CCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCC
Confidence            3456789999999999999999999999988877777776554 555666777889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||++++++++.+..|+..+..... .++|+++|+||+|+.+...+...++..+++..+++++++||++|.|++++
T Consensus        98 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  177 (201)
T 3oes_A           98 GYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGI  177 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999999876643 57899999999999888888999999999999999999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |++|.+
T Consensus       178 ~~~l~~  183 (201)
T 3oes_A          178 FTKVIQ  183 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998865

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=100.00  E-value=1.1e-36  Score=198.42  Aligned_cols=161  Identities=32%  Similarity=0.557  Sum_probs=140.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ++.+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            3579999999999999999999999887776666665333 445567888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..+++..+++++++|+++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999999887764 58999999999999877778889999999999999999999999999999999


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       161 l~~  163 (168)
T 1u8z_A          161 LMR  163 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=100.00  E-value=1.4e-36  Score=201.29  Aligned_cols=159  Identities=18%  Similarity=0.298  Sum_probs=138.5

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      +...+.+||+++|++|+|||||+++++++.+...+.++.  ..+...+.+++..+.+.+|||+|++.+.     +++++|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG--GRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC--EEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc--ceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            445678999999999999999999999998877666663  3345677788999999999999998776     788999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCC--CccccCHHHHHHHHhhcC-CeEEEEecCCCCCh
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI  159 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  159 (170)
                      ++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.  ..+.+..+++.++++..+ +.|+++||++|.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            99999999999999999999999987654 679999999999994  456788899999999997 89999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|++.
T Consensus       168 ~~lf~~l~~~  177 (184)
T 3ihw_A          168 ERVFQDVAQK  177 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=6.4e-37  Score=207.39  Aligned_cols=163  Identities=26%  Similarity=0.455  Sum_probs=141.1

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      .+....+||+++|++|+|||||+++|.++.+...+.++.+... .......+..+.+.+||++|++++..++..+++++|
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  100 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSD  100 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCe
Confidence            3456689999999999999999999999998888778877554 455667788899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHh-HHHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEE
Q 030880           84 VAVVVYDVASRQSFLN-TSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFI  149 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~  149 (170)
                      ++++|||++++++++. +..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..+++..++ .|+
T Consensus       101 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          101 AVLLCFDISRPETVDSALKKWRTEILDYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             EEEEEEETTCTHHHHHHHTHHHHHHHHHC-TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            9999999999999999 789999988775 68999999999999753            56889999999999999 999


Q ss_pred             EEecCCCCC-hHHHhhcCCC
Q 030880          150 ETSAKAGFN-IKVCLMLHPN  168 (170)
Q Consensus       150 ~~s~~~~~~-i~~~~~~l~~  168 (170)
                      +|||++|.| ++++|++|.+
T Consensus       180 e~SA~~g~g~v~~lf~~l~~  199 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASM  199 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHH
T ss_pred             EeccCCCcccHHHHHHHHHH
Confidence            999999998 9999998864

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-36  Score=203.49  Aligned_cols=166  Identities=32%  Similarity=0.444  Sum_probs=142.5

Q ss_pred             CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC
Q 030880            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (170)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   81 (170)
                      ..+.....+||+++|++|+|||||+++|.++.+...+.++.+... .......+..+.+.+||+||++. ...+..++++
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~   98 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRW   98 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHH
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhcc
Confidence            345566789999999999999999999999988777777766443 55566788889999999999988 7788889999


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC-Ch
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NI  159 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i  159 (170)
                      +|++++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+.+..+++..+++..+++++++||++|. |+
T Consensus        99 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi  178 (196)
T 2atv_A           99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNI  178 (196)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCH
Confidence            9999999999999999999999998877653 689999999999998777888899999999999999999999999 99


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|++.
T Consensus       179 ~~l~~~l~~~  188 (196)
T 2atv_A          179 TEIFYELCRE  188 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=2.6e-36  Score=201.47  Aligned_cols=161  Identities=32%  Similarity=0.502  Sum_probs=141.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            34579999999999999999999999988777777776444 44566788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc--cccCHHHHHHHHhhcCCe-EEEEecCCCCChHH
Q 030880           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK--RQVSIEEGEAKSRELNVM-FIETSAKAGFNIKV  161 (170)
Q Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~  161 (170)
                      ++|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.  +.+..+++..+++..++. ++++||++|.|+++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            999999999999997 67888777654 67999999999999753  667889999999999997 99999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|.+
T Consensus       178 l~~~l~~  184 (194)
T 3reg_A          178 VFEKSVD  184 (194)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=100.00  E-value=9.1e-37  Score=198.57  Aligned_cols=160  Identities=33%  Similarity=0.514  Sum_probs=143.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +++||+++|++|+|||||++++.++.+...+.++.+ +.........+....+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            568999999999999999999999888777666665 4445667778888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++++++.+..|+..+..... .+.|+++|+||+|+.+.+++..+++..+++..+++++++|+++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            9999999999999999998877653 689999999999998777888889999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       161 ~~  162 (167)
T 1kao_A          161 VR  162 (167)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=100.00  E-value=2.1e-36  Score=200.40  Aligned_cols=163  Identities=32%  Similarity=0.545  Sum_probs=143.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ..+..+||+++|++|+|||||+++|.++.+...+.++.... ........+..+.+.+||+||++++...+..+++++|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceE-EEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            34567999999999999999999999988877766666533 34556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      +++|||++++++++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..+++++++|+++|.|++++|
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999999999999887764 589999999999998777788899999999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       173 ~~l~~  177 (187)
T 2a9k_A          173 FDLMR  177 (187)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=100.00  E-value=3.3e-36  Score=202.44  Aligned_cols=163  Identities=32%  Similarity=0.555  Sum_probs=144.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ++...++|+++|++|+|||||++++.++.+...+.++.+... ......++..+.+.+||+||++++...+..+++++|+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   88 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   88 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence            345679999999999999999999999888777777766333 4556678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      +++|||++++++++.+..|+..+..... .+.|+++|+||+|+.+...+..+++..+++..+++++++|+++|.|++++|
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  168 (206)
T 2bov_A           89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  168 (206)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999999887753 589999999999998877788899999999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       169 ~~l~~  173 (206)
T 2bov_A          169 FDLMR  173 (206)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.3e-36  Score=200.79  Aligned_cols=161  Identities=39%  Similarity=0.687  Sum_probs=145.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|+++
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            45699999999999999999999999888777888877887777888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++.+++.+..|+..+..... .++|+++|+||+|+. ...+..+++..+++..++.++++|+++|.|++++|++
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999999877653 579999999999994 4567788899999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       172 l~~  174 (195)
T 1x3s_A          172 LVE  174 (195)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=6.1e-36  Score=200.80  Aligned_cols=161  Identities=37%  Similarity=0.663  Sum_probs=141.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeE---------------------------
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT---------------------------   57 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------   57 (170)
                      +....+||+++|++|+|||||+++|+++.+...+.++.+.+.....+...+..                           
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQ   82 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-----------------------------
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccc
Confidence            44567999999999999999999999998887777777767766666655544                           


Q ss_pred             ----------EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           58 ----------VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        58 ----------~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                                ..+.+||+||++.+...+..+++++|++++|||++++.+++.+..|+..+.....  .|+++|+||+| .
T Consensus        83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~  159 (208)
T 3clv_A           83 HNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-K  159 (208)
T ss_dssp             --CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-C
T ss_pred             cccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-c
Confidence                      8999999999999999999999999999999999999999999999999877653  99999999999 5


Q ss_pred             CccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ....+..+++.++++..+++++++||++|.|++++|++|.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          160 NKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             C-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHH
Confidence            56677889999999999999999999999999999998864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=100.00  E-value=4.2e-36  Score=197.77  Aligned_cols=158  Identities=20%  Similarity=0.359  Sum_probs=133.7

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      |...+.+||+++|++|+|||||++++.++.+.. +.++.+ +.....+..++..+.+.+||+||+++     ..+++++|
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d   74 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWAD   74 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-eeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCC
Confidence            345678999999999999999999999988775 566665 44456677788889999999999876     46788999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CccccCHHHHHHHHhhc-CCeEEEEecCCCC
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSREL-NVMFIETSAKAGF  157 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~  157 (170)
                      ++++|||++++++++.+..|+..+....   ..++|+++|+||+|+.  ..+.+..+++.++++.. +++++++||++|.
T Consensus        75 ~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (178)
T 2iwr_A           75 AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGL  154 (178)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTB
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccC
Confidence            9999999999999999999876665543   2679999999999994  45667888899998876 6899999999999


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|++|++
T Consensus       155 ~i~~lf~~l~~  165 (178)
T 2iwr_A          155 NVDRVFQEVAQ  165 (178)
T ss_dssp             THHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=100.00  E-value=4.8e-36  Score=201.87  Aligned_cols=162  Identities=38%  Similarity=0.652  Sum_probs=143.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....++|+++|++|+|||||+++|.++.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999988877788887788787787888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCCChH
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~  160 (170)
                      ++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+. ...+..+++..++. ..+++++++||++|.|++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  163 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE  163 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence            999999999999999999998877653    478999999999997 45567788888887 677899999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       164 ~l~~~l~~  171 (207)
T 1vg8_A          164 QAFQTIAR  171 (207)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=5.4e-36  Score=202.44  Aligned_cols=161  Identities=40%  Similarity=0.722  Sum_probs=145.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...++|+++|++|+|||||+++|.++.+...+.++.+.+.....+...+..+.+.+||+||++.+...+..+++++|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999999998887777788877777777778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+ ....+..+++..++...+++++++|+++|.|++++|++|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999998877678999999999999 556677888899999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       177 ~~  178 (213)
T 3cph_A          177 AK  178 (213)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=100.00  E-value=2.1e-36  Score=199.55  Aligned_cols=163  Identities=37%  Similarity=0.602  Sum_probs=129.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ....++|+++|++|+|||||++++.++.+...+.++.+.+.....+..+ +....+.+||+||++.+...+..+++++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999998877777777767766666666 556899999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCC-ccccCHHHHHHHHh-hcCCeEEEEecCCCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSR-ELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~  158 (170)
                      +++|||++++.+++.+..|+..+.....    .+.|+++|+||+|+.+ ...+..+++..+++ ..+++++++|+++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            9999999999999999999999877653    6789999999999954 34567888888888 5678999999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|++|.+
T Consensus       165 i~~l~~~l~~  174 (182)
T 1ky3_A          165 VDTAFEEIAR  174 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=100.00  E-value=4e-36  Score=197.18  Aligned_cols=161  Identities=33%  Similarity=0.424  Sum_probs=130.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--ccccchhhhcCCcE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLIPSYIRDSSV   84 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~~~~~~~~~~   84 (170)
                      ...+||+++|++|+|||||+++|.++.+...+ ++.+.+........++..+.+.+||+||++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            35689999999999999999999988765443 3344466666677888889999999999887  55667788899999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      +++|||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            999999999999999999998887653 3579999999999998777888888999999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       161 ~~l~~  165 (175)
T 2nzj_A          161 EGVVR  165 (175)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=100.00  E-value=1.6e-36  Score=205.02  Aligned_cols=164  Identities=32%  Similarity=0.508  Sum_probs=140.7

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      +|+....+||+++|++|+|||||++++.++.+...+.++.+.. ....+..++..+.+.+||+||++++..++..+++++
T Consensus         3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   81 (212)
T 2j0v_A            3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN-FSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA   81 (212)
T ss_dssp             CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC-EEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred             CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee-EEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence            4566778999999999999999999999988877777776633 345566778889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc--------cCHHHHHHHHhhcCC-eEEEEe
Q 030880           83 SVAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--------VSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      |++++|||++++++++.+. .|+..+.... ++.|+++|+||+|+.+...        +..+++..++...++ .++++|
T Consensus        82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (212)
T 2j0v_A           82 DIFVLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS  160 (212)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence            9999999999999999986 7988887765 5799999999999976543        377889999999996 999999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      |++|.|++++|++|++
T Consensus       161 a~~g~gi~~l~~~l~~  176 (212)
T 2j0v_A          161 SKTQQNVKAVFDTAIK  176 (212)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998864

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=100.00  E-value=4.9e-36  Score=195.26  Aligned_cols=158  Identities=30%  Similarity=0.411  Sum_probs=119.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.+...... .++.+.+. .......+..+.+.+||+||++++...+..+++++|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            58999999999999999999987665432 33333232 45567788899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ||++++++++.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|++|.
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999999999999987754 36899999999999988888899999999999999999999999999999999886


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       160 ~  160 (166)
T 3q72_A          160 R  160 (166)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=100.00  E-value=1.5e-36  Score=205.84  Aligned_cols=162  Identities=37%  Similarity=0.630  Sum_probs=143.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe----------EEEEEEEeCCCcccccccch
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVRLQLWDTAGQERFRSLIP   76 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~D~~g~~~~~~~~~   76 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.++....+...+.          .+.+.+||+||++++...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            45689999999999999999999998887777777776766666666655          78999999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      .+++++|++++|||++++.+++.+..|+..+..... .++|+++|+||+|+.+.+.+..+++..+++..++.++++|+++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence            999999999999999999999999999888766543 6799999999999987777888999999999999999999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      |.|++++|++|.+
T Consensus       183 g~gi~~l~~~l~~  195 (217)
T 2f7s_A          183 GQNVEKAVETLLD  195 (217)
T ss_dssp             TBTHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998864

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.3e-35  Score=194.05  Aligned_cols=161  Identities=29%  Similarity=0.456  Sum_probs=140.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++.++.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            468999999999999999999999887766666665333 3445667888899999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      |||++++++++.+..|+..+.....  .+.|+++|+||+|+.+...+...++..++...+++++++|+++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            9999999999999999888876543  57999999999999877778888899999999999999999999999999999


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |.+.
T Consensus       161 l~~~  164 (172)
T 2erx_A          161 LLNL  164 (172)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=211.00  Aligned_cols=164  Identities=38%  Similarity=0.682  Sum_probs=139.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+.....+..++..+.+.+||+||++++...+..+++++|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            34689999999999999999999998888777788877888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++.+++.+..|+..+......+.|+++|+||+|+.+.+.+..+++..++...+++++++|+++|.|++++|++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999977766789999999999998777777777889999999999999999999999999999


Q ss_pred             CCCC
Q 030880          167 PNTV  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      .+.+
T Consensus       191 ~~~l  194 (199)
T 3l0i_B          191 AAEI  194 (199)
T ss_dssp             TTTT
T ss_pred             HHHH
Confidence            8764

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=198.99  Aligned_cols=161  Identities=33%  Similarity=0.486  Sum_probs=133.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++++..++..+++++|++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   95 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF   95 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSS-EEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence            45679999999999999999999999887777677765 44455666788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEE
Q 030880           86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+.            ..+..+++..+++..++ .++++
T Consensus        96 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (201)
T 2q3h_A           96 LLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC  174 (201)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE
Confidence            9999999999999986 7988887765 58999999999999652            45678889999999897 99999


Q ss_pred             ecCCCCChHHHhhcCCC
Q 030880          152 SAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~  168 (170)
                      ||++|.|++++|++|.+
T Consensus       175 Sa~~g~gi~~l~~~l~~  191 (201)
T 2q3h_A          175 SALTQKNLKEVFDAAIV  191 (201)
T ss_dssp             CTTTCTTHHHHHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHH
Confidence            99999999999998864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=100.00  E-value=3.2e-36  Score=204.36  Aligned_cols=164  Identities=29%  Similarity=0.474  Sum_probs=140.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      .....+||+++|++|+|||||+++|+++.+...+.++.+........... +..+.+.+||+||++.+...+..+++++|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            34567999999999999999999999888777666776656555555443 34489999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      ++++|||++++.+++.+..|+..+......+.|+++|+||+|+.+...+..+++..++...++.++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999999988877779999999999998777888899999999999999999999999999999


Q ss_pred             hcCCC
Q 030880          164 MLHPN  168 (170)
Q Consensus       164 ~~l~~  168 (170)
                      ++|.+
T Consensus       167 ~~l~~  171 (218)
T 4djt_A          167 LHLAR  171 (218)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=100.00  E-value=2.1e-35  Score=195.97  Aligned_cols=160  Identities=29%  Similarity=0.509  Sum_probs=139.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+++||+++|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++++...+..+++++|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3578999999999999999999999888777666664 555666778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++++.+..|+..+..... .+.|+++|+||+|+. ......+++..+++..+++++++||++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  159 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYT  159 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999887653 689999999999986 4556778899999999999999999999999999998


Q ss_pred             CCC
Q 030880          166 HPN  168 (170)
Q Consensus       166 l~~  168 (170)
                      |.+
T Consensus       160 l~~  162 (189)
T 4dsu_A          160 LVR  162 (189)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=100.00  E-value=6.5e-37  Score=206.14  Aligned_cols=162  Identities=28%  Similarity=0.474  Sum_probs=107.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEECCe--EEEEEEEeCCCcccccccchhhhcCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYLEDR--TVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      ...++|+++|++|+|||||+++|.++  .+...+.++.+.+.....+..++.  .+.+.+||+||++++...+..+++++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            35689999999999999999999998  666666777766677777777776  88999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCC-ccccCHHHHHHHHhhcCCeEEEEecCC-CC
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVE-KRQVSIEEGEAKSRELNVMFIETSAKA-GF  157 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~  157 (170)
                      |++++|||++++.+++.+..|+..+.....   .+.|+++|+||+|+.+ .+.+..+++..+++..++.++++|+++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999999988775   6899999999999987 677888999999999999999999999 99


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|++|.+
T Consensus       178 gi~~l~~~i~~  188 (208)
T 2yc2_C          178 DADAPFLSIAT  188 (208)
T ss_dssp             --CHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=100.00  E-value=2.3e-35  Score=196.17  Aligned_cols=163  Identities=28%  Similarity=0.503  Sum_probs=130.8

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      .+.+..++|+++|.+|+|||||+++|.++.+...+.++.+ +.........+..+.+.+||+||++++...+..+++.+|
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccc-eEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            3456789999999999999999999999887766666655 334456667888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+.+ .....+++.++++..+++++++|+++|.|++++
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999998877653 5799999999999865 556788899999999999999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |++|.+
T Consensus       174 ~~~l~~  179 (190)
T 3con_A          174 FYTLVR  179 (190)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=100.00  E-value=7.8e-36  Score=197.61  Aligned_cols=161  Identities=24%  Similarity=0.473  Sum_probs=138.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||+++|.++.+...+.++.+... .......+..+.+.+||+||++.+...+..+++++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999999988777777766444 44566778889999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEE
Q 030880           86 VVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIET  151 (170)
Q Consensus        86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~  151 (170)
                      ++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..+++.++ +.++++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~  161 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC  161 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe
Confidence            999999999999998 78888887664 57999999999999642            4577888999999888 699999


Q ss_pred             ecC-CCCChHHHhhcCCC
Q 030880          152 SAK-AGFNIKVCLMLHPN  168 (170)
Q Consensus       152 s~~-~~~~i~~~~~~l~~  168 (170)
                      ||+ ++.|++++|+++.+
T Consensus       162 Sa~~~~~gi~~l~~~i~~  179 (184)
T 1m7b_A          162 SALQSENSVRDIFHVATL  179 (184)
T ss_dssp             BTTTBHHHHHHHHHHHHH
T ss_pred             eecCCCcCHHHHHHHHHH
Confidence            999 68999999998865

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=100.00  E-value=1.4e-35  Score=196.32  Aligned_cols=160  Identities=31%  Similarity=0.499  Sum_probs=139.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +..+||+++|++|+|||||++++.++.+...+.++.. +.........+..+.+.+||+||++++...+..+++++|+++
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   81 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc-ceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999888777666665 334555677888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+.            +.+..+++..+++..++ +++++|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           82 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            999999999999987 6888887765 48999999999998653            45678889999999997 999999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      |++|.|++++|++|.+
T Consensus       161 a~~g~gi~~l~~~l~~  176 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIR  176 (186)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHHHH
Confidence            9999999999998764

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.3e-36  Score=200.89  Aligned_cols=162  Identities=29%  Similarity=0.406  Sum_probs=134.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-ccccchhhhcCC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDS   82 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~   82 (170)
                      ....+||+++|++|+|||||++++.+...  ... .++.+.+.....+.+++..+.+.+|||+|++. +..+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            34569999999999999999999996432  333 23455566667777888889999999999876 455667778899


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      +++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            99999999999999999999988876543 35799999999999987777888888899999999999999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|++
T Consensus       193 lf~~l~~  199 (211)
T 2g3y_A          193 LFEGIVR  199 (211)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998865

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=100.00  E-value=1.1e-35  Score=200.06  Aligned_cols=160  Identities=24%  Similarity=0.476  Sum_probs=138.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+... ...+..++..+.+.+||+||++.+...+..+++++|+++
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            4579999999999999999999999988777777776444 445666777899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEe
Q 030880           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s  152 (170)
                      +|||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+.            +.+..+++..+++.++ +.++++|
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            99999999999998 78988887664 57999999999999642            4577888999999888 6999999


Q ss_pred             cC-CCCChHHHhhcCCC
Q 030880          153 AK-AGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~-~~~~i~~~~~~l~~  168 (170)
                      |+ ++.|++++|++|++
T Consensus       184 Ak~~~~gv~~lf~~l~~  200 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATL  200 (205)
T ss_dssp             TTTCHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHH
Confidence            99 68999999998865

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=100.00  E-value=1.8e-35  Score=198.94  Aligned_cols=163  Identities=30%  Similarity=0.486  Sum_probs=139.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....+||+++|++|+|||||++++..+.+...+.++.. +........++..+.+.+||+||++++...+..+++++|++
T Consensus        27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  105 (204)
T 4gzl_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF  105 (204)
T ss_dssp             ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence            35679999999999999999999999888777667665 55566667788888999999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc------------cCHHHHHHHHhhcCC-eEEEE
Q 030880           86 VVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ------------VSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+...            +..+++..+++..++ +++++
T Consensus       106 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            9999999999999987 7888887765 6899999999999975532            778889999999997 69999


Q ss_pred             ecCCCCChHHHhhcCCCCC
Q 030880          152 SAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~~i  170 (170)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999987653

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=200.50  Aligned_cols=160  Identities=31%  Similarity=0.524  Sum_probs=120.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.. +........++..+.+.+||+||++++...+..+++++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCC-EEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4579999999999999999999999887766666665 444555677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||++++++++.+. .|+..+.... .++|+++|+||+|+.+..            .+..+++..+++..++ .++++|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFC-KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            999999999999986 7888887664 679999999999997643            5677889999999998 999999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      |++|.|++++|++|.+
T Consensus       190 A~~g~gi~el~~~l~~  205 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAE  205 (214)
T ss_dssp             TTTTBSHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=3.7e-35  Score=196.33  Aligned_cols=163  Identities=29%  Similarity=0.448  Sum_probs=139.7

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      ++....++|+++|++|+|||||+++|.++.+...+.++.+.. .......++..+.+.+||+||++++...+..+++++|
T Consensus         3 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   81 (199)
T 2gf0_A            3 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT-YRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH   81 (199)
T ss_dssp             --CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEE-EEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred             ccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccc-eeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence            345567999999999999999999999988876666666533 3445567788889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      ++++|||++++++++.+..|+..+.....  .+.|+++|+||+|+.+ ..+..+++..++...++.++++||++|.|+++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  160 (199)
T 2gf0_A           82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKE  160 (199)
T ss_dssp             EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Confidence            99999999999999999988887766543  4789999999999964 55677888999999999999999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +|++|.+
T Consensus       161 l~~~l~~  167 (199)
T 2gf0_A          161 LFQELLT  167 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999864

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=100.00  E-value=6.2e-35  Score=189.60  Aligned_cols=159  Identities=28%  Similarity=0.499  Sum_probs=139.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +.+||+++|++|+|||||++++.++.+...+.++.+ +.........+..+.+.+||+||++++...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccc-eEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            468999999999999999999999887766666655 3345556678888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++.+++.+..|+..+..... .+.|+++++||+|+.+ .....+++.++++..+++++++|+++|.|++++|++|
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999999877653 5799999999999865 4567788999999999999999999999999999988


Q ss_pred             CC
Q 030880          167 PN  168 (170)
Q Consensus       167 ~~  168 (170)
                      .+
T Consensus       160 ~~  161 (166)
T 2ce2_X          160 VR  161 (166)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=100.00  E-value=1.8e-36  Score=200.03  Aligned_cols=163  Identities=34%  Similarity=0.523  Sum_probs=124.8

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      ++....+||+++|++|+|||||++++..+.+...+.++.+... .......+..+.+.+||+||++++...+..+++++|
T Consensus         3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   81 (182)
T 3bwd_D            3 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGAD   81 (182)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-BCCCC-------CEEECCCC-CTTTTTGGGGGTTCS
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCC
Confidence            4456779999999999999999999999887766666655332 333445566778899999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc----------cCHHHHHHHHhhcCC-eEEEE
Q 030880           84 VAVVVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----------VSIEEGEAKSRELNV-MFIET  151 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~  151 (170)
                      ++++|||++++++++.+. .|+..+.... .+.|+++|+||+|+.+...          +..+++..+++..++ +++++
T Consensus        82 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  160 (182)
T 3bwd_D           82 VFILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIEC  160 (182)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEE
Confidence            999999999999999987 6888887765 4799999999999876544          477888999999997 99999


Q ss_pred             ecCCCCChHHHhhcCCC
Q 030880          152 SAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~  168 (170)
                      ||++|.|++++|++|.+
T Consensus       161 Sa~~~~gi~~l~~~l~~  177 (182)
T 3bwd_D          161 SSKSQENVKGVFDAAIR  177 (182)
T ss_dssp             CTTTCTTHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHH
Confidence            99999999999998865

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=100.00  E-value=7e-35  Score=195.60  Aligned_cols=160  Identities=32%  Similarity=0.539  Sum_probs=139.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.+.+.. .....++..+.+.+||+||++++...+..+++++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence            34689999999999999999999999887777777664443 34567888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..+++..++ .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (201)
T 2gco_A          102 MCFSIDSPDSLENIPEKWTPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence            99999999999998 67877776654 57999999999999764            45778889999999998 999999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      |++|.|++++|++|.+
T Consensus       181 A~~g~gi~~l~~~i~~  196 (201)
T 2gco_A          181 AKTKEGVREVFEMATR  196 (201)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998865

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=5.4e-36  Score=203.71  Aligned_cols=163  Identities=27%  Similarity=0.544  Sum_probs=142.8

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      .......+||+++|.+|+|||||+++++.+.+...+.++.+.+.........+..+.+.+|||||++.+...+..+++++
T Consensus         9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   88 (221)
T 3gj0_A            9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQA   88 (221)
T ss_dssp             TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTC
T ss_pred             CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcC
Confidence            34556789999999999999999999887776666677777788787788888999999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      |++++|||++++.+++.+..|+..+.... .+.|+++|+||+|+.+... . .+...+++..++.++++|+++|.|++++
T Consensus        89 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  165 (221)
T 3gj0_A           89 QCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKP  165 (221)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            99999999999999999999999998775 5799999999999965443 2 3566778888999999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |++|.+
T Consensus       166 ~~~l~~  171 (221)
T 3gj0_A          166 FLWLAR  171 (221)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=9.5e-35  Score=195.77  Aligned_cols=160  Identities=31%  Similarity=0.527  Sum_probs=133.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      +..+||+++|++|+|||||+++|.++.+...+.++.+.... .....++..+.+.+||+||++++...+..+++++|+++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  101 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL  101 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence            45789999999999999999999998887776676664443 34567888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.            +.+..+++..++...++ .++++|
T Consensus       102 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          102 MCFSVDSPDSLENIPEKWVPEVKHFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHS-TTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            99999999999998 67888777654 57999999999999654            45677888999999998 999999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      |++|.|++++|++|.+
T Consensus       181 A~~g~gi~el~~~l~~  196 (207)
T 2fv8_A          181 AKTKEGVREVFETATR  196 (207)
T ss_dssp             TTTCTTHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHH
Confidence            9999999999998864

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=100.00  E-value=1.2e-35  Score=198.45  Aligned_cols=161  Identities=22%  Similarity=0.224  Sum_probs=132.0

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-----------ccceeeeEEEEEEE-EECCeEEEEEEEeCCCccccc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-----------YQATIGIDFLSKTM-YLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      .....+||+++|++|+|||||++.+.+. +...           +.++.+.+...... ..++..+.+.+|||||++++.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            3456799999999999999999766654 3333           23455445544444 556778899999999999999


Q ss_pred             ccchhhhcCCcEEEEEEeCC------ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC
Q 030880           73 SLIPSYIRDSSVAVVVYDVA------SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV  146 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (170)
                      ..+..+++++|++++|||++      +.++++.+..|+..+. ....++|+++|+||+|+.+.  +..+++.++++..++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~  165 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK  165 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence            99999999999999999999      5677888888888773 23378999999999999654  778899999999999


Q ss_pred             -eEEEEecCCCCChHHHhhcCCCC
Q 030880          147 -MFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       147 -~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                       .++++||++|.|++++|++|.+.
T Consensus       166 ~~~~~~Sa~~~~gv~~l~~~l~~~  189 (198)
T 3t1o_A          166 FPVLEAVATEGKGVFETLKEVSRL  189 (198)
T ss_dssp             SCEEECBGGGTBTHHHHHHHHHHH
T ss_pred             ceEEEEecCCCcCHHHHHHHHHHH
Confidence             99999999999999999998653

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=100.00  E-value=3e-34  Score=191.27  Aligned_cols=161  Identities=29%  Similarity=0.447  Sum_probs=132.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC--CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc-ccccchhhhcCCc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-FRSLIPSYIRDSS   83 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~-~~~~~~~~~~~~~   83 (170)
                      ...+||+++|++|+|||||++++.+..  +...+ ++.+.+.....+.+++..+.+.+||++|.+. +..+...+++.+|
T Consensus         4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            456899999999999999999999632  23332 3344566666777888889999999999776 4557778889999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            9999999999999999999988887653 357999999999999776777888888888889999999999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |++|++
T Consensus       163 f~~l~~  168 (192)
T 2cjw_A          163 FEGIVR  168 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=100.00  E-value=9.9e-34  Score=189.60  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=123.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+..  ...+..++  ..+.+|||||++++...+..+++++|+++
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999987764 344554433  23344455  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-----------------cCCeE
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-----------------LNVMF  148 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~~  148 (170)
                      +|||++++++++.+..|+..+.... ..++|+++|+||+|+.+  .+..+++.+++..                 .++.+
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            9999999999999999998887653 36799999999999965  4567777777653                 34689


Q ss_pred             EEEecCCCCChHHHhhcCCCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      ++|||++|.|++++|++|.+.+
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHHHhc
Confidence            9999999999999999998764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=100.00  E-value=1.2e-34  Score=193.85  Aligned_cols=161  Identities=17%  Similarity=0.238  Sum_probs=124.7

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCC
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDS   82 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~   82 (170)
                      .++....||+++|++|+|||||+++|.++.+.. .+.++.+.....  +  ....+.+.+|||||++++...+..+++++
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET--F--EKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE--E--EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            445677999999999999999999999998877 666776643332  2  34557899999999999999999999999


Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcC--------CCCeEEEEEeCCCCCCcccc---CHHHHH-HHHhhcCCeEEE
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERG--------SDVIIVLVGNKTDLVEKRQV---SIEEGE-AKSRELNVMFIE  150 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~---~~~~~~-~~~~~~~~~~~~  150 (170)
                      |++|+|||++++++|+.+..|+..+.....        .++|+++|+||+|+.+....   ...... .+++..++.+++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence            999999999999999999999888765421        27999999999999765321   111111 122557789999


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +||++|.|++++|++|.+
T Consensus       168 ~Sa~~g~gv~~l~~~l~~  185 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQE  185 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHH
T ss_pred             eeCCCccCHHHHHHHHHH
Confidence            999999999999999865

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=100.00  E-value=3.1e-33  Score=186.06  Aligned_cols=157  Identities=22%  Similarity=0.239  Sum_probs=128.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.+. .+.++.+..  ...+..++  +.+.+||+||++++...+..+++++|+++
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   95 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV   95 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence            35689999999999999999999988764 344555433  33444554  78999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhh------------cCCeEEEEec
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE------------LNVMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s~  153 (170)
                      +|||++++++++....|+..+.... ..+.|+++|+||+|+.+  .+..+++.+....            .++.++++||
T Consensus        96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999998886643 36799999999999965  4566677666543            3568999999


Q ss_pred             CCCCChHHHhhcCCCCC
Q 030880          154 KAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~~i  170 (170)
                      ++|.|++++|++|.+.+
T Consensus       174 ~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             TTTBSHHHHHHHHHTTC
T ss_pred             CcCCCHHHHHHHHHhhC
Confidence            99999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=100.00  E-value=2.4e-33  Score=185.20  Aligned_cols=159  Identities=20%  Similarity=0.305  Sum_probs=124.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ...+.+||+++|++|+|||||+++|.++.+ ..+.++.+...  ..+...+  ..+.+||+||++++...+..+++++|+
T Consensus        17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (181)
T 2h17_A           17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEF   91 (181)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCE
T ss_pred             CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345679999999999999999999999877 34445544332  2333333  789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~  158 (170)
                      +++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+..     ...++.++++||++|.|
T Consensus        92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           92 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            999999999999999999988876643 367999999999999653  3334444433     23456899999999999


Q ss_pred             hHHHhhcCCCCC
Q 030880          159 IKVCLMLHPNTV  170 (170)
Q Consensus       159 i~~~~~~l~~~i  170 (170)
                      ++++|++|.+.+
T Consensus       170 i~~l~~~l~~~l  181 (181)
T 2h17_A          170 LCQGLEWMMSRL  181 (181)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHhhC
Confidence            999999998764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-33  Score=184.37  Aligned_cols=157  Identities=18%  Similarity=0.273  Sum_probs=127.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC-CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ...+||+++|++|+|||||+++|.++. +...+.++.+.  ....+..+  +..+.+||+||++++...+..+++++|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGF--SIEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSE--EEEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccce--eEEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            467999999999999999999999887 45555555553  33334444  36899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhcC---CCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCC
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTERG---SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGF  157 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~  157 (170)
                      ++|||++++++++.+..|+..+.....   .+.|+++|+||+|+.+.  ...+++.+...     ..++.++++||++|.
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  172 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGE  172 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCc
Confidence            999999999999999999988877643   57999999999999643  34555665553     246789999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |++++|++|.+.
T Consensus       173 gi~~l~~~l~~~  184 (190)
T 2h57_A          173 GLQEGVDWLQDQ  184 (190)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999998653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=100.00  E-value=1.9e-32  Score=183.43  Aligned_cols=161  Identities=35%  Similarity=0.676  Sum_probs=142.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..++|+++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++++++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            35899999999999999999999988877777777777777778888888999999999999999899999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||+++..+++.+..|+..+......+.|+++++||+|+.+...+...++..++...++.++++|++++.|++++|++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999998888766556799999999999987777788889999999999999999999999999999876


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       164 ~  164 (199)
T 2f9l_A          164 T  164 (199)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=100.00  E-value=4.9e-34  Score=189.60  Aligned_cols=157  Identities=24%  Similarity=0.354  Sum_probs=127.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||+++|.++.+...+.++.+.+...  +.  ...+.+.+||+||++++...+..+++++|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            357999999999999999999999988876667776655432  22  33578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+.....     ...++.++++||++|.|++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            9999999999999999988876643 2679999999999996542  223322221     1335689999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       174 ~l~~~l~~~  182 (188)
T 1zd9_A          174 ITLQWLIQH  182 (188)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=100.00  E-value=5e-34  Score=190.21  Aligned_cols=157  Identities=20%  Similarity=0.336  Sum_probs=118.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ..+.+||+++|++|+|||||++++..+.+. .+.|+.+.  ....+..  ..+.+.+||+||++++...+..+++++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~--~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGF--NVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTE--EEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCce--eEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            456799999999999999999999988765 33454442  2223333  347899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHH-----HhhcCCeEEEEecCCCCCh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i  159 (170)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+....     +...+++++++||++|.|+
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            99999999999999999988876543 3579999999999996542  22222222     2234568999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|++.
T Consensus       179 ~~l~~~l~~~  188 (192)
T 2b6h_A          179 YDGLDWLSHE  188 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=100.00  E-value=2.4e-32  Score=181.91  Aligned_cols=163  Identities=34%  Similarity=0.655  Sum_probs=146.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...++++++|++|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++++...+..+++.+++++
T Consensus        27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i  106 (191)
T 1oix_A           27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL  106 (191)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence            34589999999999999999999999887777888887877788888898889999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||.++..+++.+..|+..+......+.|+++++||+|+.+.......++..++.+.++.++.+|++++.|++++|++|
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l  186 (191)
T 1oix_A          107 LVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI  186 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999889888776655678999999999998777778889999999999999999999999999999988


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      .+.
T Consensus       187 ~~~  189 (191)
T 1oix_A          187 LTE  189 (191)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=100.00  E-value=3.3e-34  Score=186.25  Aligned_cols=153  Identities=22%  Similarity=0.346  Sum_probs=120.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+.. +.|+.+..  ...+.  ...+.+.+||+||++++...+..+++++|++++||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999999887654 35555422  22222  34578999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHH-----HhhcCCeEEEEecCCCCChHHHh
Q 030880           90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      |++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ...+....     +...+++++++||++|.|++++|
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  153 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL  153 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence            9999999999999988876542 3679999999999996542  22222222     22245689999999999999999


Q ss_pred             hcCCCC
Q 030880          164 MLHPNT  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|.+.
T Consensus       154 ~~l~~~  159 (164)
T 1r8s_A          154 DWLSNQ  159 (164)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=100.00  E-value=1.5e-33  Score=184.29  Aligned_cols=155  Identities=20%  Similarity=0.312  Sum_probs=123.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++.+.. +.++.+...  ......  ...+.+||+||++.+...+..+++++|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            356899999999999999999999887653 455554332  333334  578999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHH-----HHHhhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++....|+..+.... ..+.|+++|+||+|+.+...  ..+..     ..+...+++++++|+++|.|++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGLD  157 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCHH
Confidence            9999999999999999888876543 26799999999999965432  22222     2233456789999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       158 ~l~~~l~~  165 (171)
T 1upt_A          158 EAMEWLVE  165 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=100.00  E-value=8.6e-33  Score=183.13  Aligned_cols=155  Identities=23%  Similarity=0.326  Sum_probs=125.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.++|+++|++|+|||||++++.++. ...+.++.+...  ..+...  ...+.+|||||++++...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            567999999999999999999999888 556666665333  333333  478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.++.  ..++..+...     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL  168 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence            9999999999999999988876653 3679999999999996543  3334333322     346789999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       169 ~l~~~l~~  176 (186)
T 1ksh_A          169 PGIDWLLD  176 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=100.00  E-value=3.9e-33  Score=186.40  Aligned_cols=163  Identities=15%  Similarity=0.147  Sum_probs=122.5

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEE-CCeEEEEEEEeCCCcccccccc---hhhh
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRSLI---PSYI   79 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~---~~~~   79 (170)
                      .+....+||+++|++|+|||||++++.+.... ................. .+..+.+.+||+||+++|....   ..++
T Consensus        15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   93 (196)
T 3llu_A           15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIF   93 (196)
T ss_dssp             -----CCEEEEEESTTSSHHHHHHHHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHH
T ss_pred             cccCcceEEEEECCCCCCHHHHHHHHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccc
Confidence            34556899999999999999999988875332 22222222222222223 2566789999999999987776   8999


Q ss_pred             cCCcEEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC-------ccccCHHHHHHHHh----hcCC
Q 030880           80 RDSSVAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE-------KRQVSIEEGEAKSR----ELNV  146 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------~~~~~~~~~~~~~~----~~~~  146 (170)
                      +++|++++|||++++  +++..+..|+..+.... .+.|+++|+||+|+.+       .+.+...++..+++    ..++
T Consensus        94 ~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  172 (196)
T 3llu_A           94 RGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHL  172 (196)
T ss_dssp             HTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCE
T ss_pred             ccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCc
Confidence            999999999999997  77777888888775443 6899999999999764       24455666777887    7788


Q ss_pred             eEEEEecCCCCChHHHhhcCCCC
Q 030880          147 MFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .|+++||++ .|++++|+.|++.
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHH
T ss_pred             ceEEEEech-hhHHHHHHHHHHH
Confidence            999999999 9999999988764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=100.00  E-value=1.3e-32  Score=181.66  Aligned_cols=158  Identities=23%  Similarity=0.346  Sum_probs=124.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      +...++|+++|++|+|||||++++.++.+. .+.++.+..  ...+...  .+.+.+||+||++.+...+..+++++|++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            356799999999999999999999987543 344555433  2233344  47899999999999999999999999999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCCh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i  159 (170)
                      ++|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+..  ..++..+..     ...++.++++||++|.|+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi  165 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence            99999999999999999988875542 3679999999999996543  223333221     233568999999999999


Q ss_pred             HHHhhcCCCCC
Q 030880          160 KVCLMLHPNTV  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      +++|++|.+.+
T Consensus       166 ~~l~~~l~~~~  176 (181)
T 1fzq_A          166 QDGMNWVCKNV  176 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHH
Confidence            99999987643

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=7.7e-33  Score=183.60  Aligned_cols=155  Identities=21%  Similarity=0.304  Sum_probs=121.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...++|+++|++|+|||||++++.++.+. .+.++.+...  ..+...  ...+.+||+||++++...+..+++++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEET--TEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988765 4455544322  233333  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++..+..     +..++.++++||++|.|++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  166 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  166 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHH
Confidence            9999999999999999998887653 267999999999999653  3344444443     2346799999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|++
T Consensus       167 ~l~~~l~~  174 (187)
T 1zj6_A          167 QGLEWMMS  174 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999865

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=199.08  Aligned_cols=162  Identities=31%  Similarity=0.496  Sum_probs=137.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...+||+++|++|+|||||++++.++.+...+.++.. +........++..+.+.+||+||++++...+..+++++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            4679999999999999999999998887766666654 333445556677788999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcc------------ccCHHHHHHHHhhcCC-eEEEEe
Q 030880           87 VVYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKR------------QVSIEEGEAKSRELNV-MFIETS  152 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~s  152 (170)
                      +|||++++.+++.+. .|+..+.... .+.|+++|+||+|+.+..            .+..+++..+++..++ +++++|
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vS  185 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  185 (204)
Confidence            999999999999986 7877776654 479999999999996543            4556778888888888 999999


Q ss_pred             cCCCCChHHHhhcCCCCC
Q 030880          153 AKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~~i  170 (170)
                      |++|.|++++|++|.+.+
T Consensus       186 A~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          186 ALTQRGLKTVFDEAIRAV  203 (204)
Confidence            999999999999998754

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=100.00  E-value=4e-32  Score=194.58  Aligned_cols=159  Identities=30%  Similarity=0.484  Sum_probs=139.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..++|+++|.+|+|||||++++.++.+...+.++.. +.....+..++..+.+.+||+||++.+...+..+++++|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSE-EEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccc-ceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999888777777665 4445566778888999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEec
Q 030880           88 VYDVASRQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSA  153 (170)
Q Consensus        88 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~  153 (170)
                      |||++++.+++.+. .|+..+.... .++|+++|+||+|+.+.            +.+..+++..+++..++ +++++||
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            99999999999987 6888887665 48999999999998653            56778899999999997 9999999


Q ss_pred             CCCCChHHHhhcCCC
Q 030880          154 KAGFNIKVCLMLHPN  168 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~  168 (170)
                      ++|.|++++|++|.+
T Consensus       312 ~~~~gi~~l~~~l~~  326 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIR  326 (332)
T ss_dssp             TTCTTHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=100.00  E-value=2.1e-33  Score=186.00  Aligned_cols=159  Identities=21%  Similarity=0.359  Sum_probs=120.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC--CCCCcccceeeeEEEEEEEEE---CCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD--KFDNTYQATIGIDFLSKTMYL---EDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      .+||+++|++|+|||||++++.+.  .+...+.++.+.+........   .+..+.+.+||++|++++..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999999985  444455677666665555433   235678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC---HHHHHHHHhhcCCe----EEEEecCC
Q 030880           84 VAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS---IEEGEAKSRELNVM----FIETSAKA  155 (170)
Q Consensus        84 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~  155 (170)
                      ++++|||++++ .+++.+..|+..+.... ++.|+++|+||+|+.+...+.   ...+..+++..+++    ++++||++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  160 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE  160 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhC-CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence            99999999997 58999999999887654 579999999999997654432   34456677777876    99999999


Q ss_pred             CC-ChHHHhhcCCC
Q 030880          156 GF-NIKVCLMLHPN  168 (170)
Q Consensus       156 ~~-~i~~~~~~l~~  168 (170)
                      +. |++++++.|.+
T Consensus       161 ~~~~~~~l~~~i~~  174 (184)
T 2zej_A          161 ESDALAKLRKTIIN  174 (184)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHH
Confidence            96 99999987753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=100.00  E-value=2e-33  Score=186.63  Aligned_cols=155  Identities=21%  Similarity=0.304  Sum_probs=122.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||++++..+.+.. +.++.+..  .......  ...+.+|||||++++...+..+++++|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            467999999999999999999998877643 34544422  2233333  478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHH-----HHhhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++....|+..+.... ..+.|+++|+||+|+.+..  ...+...     .+...+++++++||++|.|++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  172 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV  172 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence            9999999999999999888876543 3679999999999996542  2222222     223345689999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       173 ~l~~~l~~  180 (189)
T 2x77_A          173 EGMDWLVE  180 (189)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.98  E-value=6.6e-32  Score=178.34  Aligned_cols=155  Identities=23%  Similarity=0.346  Sum_probs=120.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ...++|+++|++|+|||||++++.++.+ ..+.++.+...  ......  ...+.+||+||++++...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999998776 34445544332  233333  378999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----hcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----ELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~  160 (170)
                      +|||++++++++.+..|+..+.... ..+.|+++|+||+|+.+.  ...++......     ..+++++++||++|.|++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  168 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  168 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence            9999999999999999998887654 368999999999999653  23444444432     234589999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       169 ~l~~~l~~  176 (183)
T 1moz_A          169 EGLDWLID  176 (183)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999864

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.97  E-value=8.7e-33  Score=191.57  Aligned_cols=163  Identities=17%  Similarity=0.244  Sum_probs=123.3

Q ss_pred             cCCCCceeEEEEcCC---------CCCHHHHHHHHhc---CCCCCccccee-eeEEEEEEE--------------EECCe
Q 030880            4 VSALAKYKLVFLGDQ---------SVGKTSIITRFMY---DKFDNTYQATI-GIDFLSKTM--------------YLEDR   56 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~   56 (170)
                      ......+||+++|.+         |+|||||+++|.+   +.+...+.++. +.++....+              ..++.
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   93 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCV   93 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-------
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCc
Confidence            345567999999999         9999999999998   45555555554 223222111              13456


Q ss_pred             EEEEEEEe-----------------------CCCcccccccchhhhc---------------------CCcEEEEEEeCC
Q 030880           57 TVRLQLWD-----------------------TAGQERFRSLIPSYIR---------------------DSSVAVVVYDVA   92 (170)
Q Consensus        57 ~~~~~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~   92 (170)
                      .+.+.+||                       ++|+++|..++..+++                     ++|++++|||++
T Consensus        94 ~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t  173 (255)
T 3c5h_A           94 ECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVS  173 (255)
T ss_dssp             --CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECB
T ss_pred             EEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECC
Confidence            78899999                       6677777777777777                     799999999999


Q ss_pred             Ch--hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh-cCCeEEEEecCCCCChHHHhhcCCC
Q 030880           93 SR--QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        93 ~~--~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++  ++++.+..|+..+... ...++|+++|+||+|+.+.+.+  +++..++.. .++.++++||++|.|++++|++|++
T Consensus       174 ~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          174 RGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             C----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            98  9999999999998766 3367999999999999655444  577778776 4889999999999999999999865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.97  E-value=2.3e-31  Score=173.26  Aligned_cols=153  Identities=15%  Similarity=0.203  Sum_probs=114.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cchhhhc-
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYIR-   80 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~~-   80 (170)
                      +.++|+++|++|+|||||++++.+..+.....++.+.+.....+...+  ..+.+|||||++.+..      +...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            468999999999999999999998766544445444444444444444  5799999999887752      3355554 


Q ss_pred             -CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           81 -DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        81 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                       ++|++++|+|+++.+.   ...|+..+..   .++|+++|+||+|+.....+.. ++..+++..+++++++||++|.|+
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v  152 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI  152 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence             8999999999988643   3446666544   3699999999999865544432 467788888999999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|++|.+.
T Consensus       153 ~~l~~~l~~~  162 (165)
T 2wji_A          153 EELKKAISIA  162 (165)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.97  E-value=6.6e-32  Score=182.64  Aligned_cols=161  Identities=20%  Similarity=0.265  Sum_probs=113.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe-EEEEEEEeCCCcccccc-cchhhhcCCc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR-TVRLQLWDTAGQERFRS-LIPSYIRDSS   83 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~g~~~~~~-~~~~~~~~~~   83 (170)
                      ....+||+++|++|+|||||+++|+++.+...+.++ ..+...  ...++. .+.+.+|||||++++.. ++..+++++|
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI-TDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC-SCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc-ceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            456799999999999999999999998877665433 333333  444433 57899999999999987 7888999999


Q ss_pred             EEEEEEeCCChh-hHHhHHHHHHHH-HHh--cCCCCeEEEEEeCCCCCCccccC--HHHHHH------------------
Q 030880           84 VAVVVYDVASRQ-SFLNTSKWIDEV-RTE--RGSDVIIVLVGNKTDLVEKRQVS--IEEGEA------------------  139 (170)
Q Consensus        84 ~~i~v~d~~~~~-s~~~~~~~~~~~-~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~------------------  139 (170)
                      ++++|||+++.+ ++.....++..+ ...  ...++|+++|+||+|+.+.....  .+....                  
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999854 466655544443 332  23579999999999997543211  011111                  


Q ss_pred             --------------HHh-hc--CCeEEEEecCCC------CChHHHhhcCCCC
Q 030880          140 --------------KSR-EL--NVMFIETSAKAG------FNIKVCLMLHPNT  169 (170)
Q Consensus       140 --------------~~~-~~--~~~~~~~s~~~~------~~i~~~~~~l~~~  169 (170)
                                    ++. .+  ++.|++|||++|      .|++++|++|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                          111 11  678999999999      9999999998764

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.97  E-value=2.9e-30  Score=183.17  Aligned_cols=157  Identities=22%  Similarity=0.299  Sum_probs=124.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-----cccchhhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-----RSLIPSYI   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----~~~~~~~~   79 (170)
                      ..+||+++|++|+|||||+++++++...   ..+.+|.+....  .....+ .+.+.+||+||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~--~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS--HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE--EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE--EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999999987332   133444443333  333333 679999999999988     77888999


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCC--ccc----cCHHHHHHHHhhcC---CeE
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVE--KRQ----VSIEEGEAKSRELN---VMF  148 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~~  148 (170)
                      +++|++++|||++++++++.+..|...+....  .+++|+++++||+|+.+  .+.    +..+++.++++.+|   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755544332  36899999999999976  343    55688889999987   799


Q ss_pred             EEEecCCCCChHHHhhcCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +++|+++ .|+.+.|..+.+
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~  177 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVC  177 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHH
T ss_pred             EEeeecC-ChHHHHHHHHHH
Confidence            9999999 899988877654

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.97  E-value=2.7e-31  Score=190.04  Aligned_cols=155  Identities=23%  Similarity=0.346  Sum_probs=116.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|.+|+|||||+++|.++.+... .++.+....  .+.  ...+.+.+|||||++.+..++..+++++|++|+
T Consensus       164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil  238 (329)
T 3o47_A          164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF  238 (329)
T ss_dssp             CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred             CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence            467999999999999999999998876533 344443332  222  344789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~  161 (170)
                      |||++++++++.+..|+..+.... ..++|+++|+||+|+.+..  ..++.....     ...+++++++||++|.|+++
T Consensus       239 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          239 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            999999999999988887775543 3689999999999996543  223332222     22356899999999999999


Q ss_pred             HhhcCCCC
Q 030880          162 CLMLHPNT  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|.+.
T Consensus       317 l~~~l~~~  324 (329)
T 3o47_A          317 GLDWLSNQ  324 (329)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.97  E-value=4.6e-30  Score=175.23  Aligned_cols=159  Identities=16%  Similarity=0.149  Sum_probs=112.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPS   77 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~   77 (170)
                      ...++|+++|++|+|||||+++|+++.+.....+..+.+.........  ...+.+|||||+...         ...+..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            467999999999999999999999887643222322223333223223  368999999998321         112234


Q ss_pred             hhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH---HHHHHHhhcC--CeEEE
Q 030880           78 YIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE---EGEAKSRELN--VMFIE  150 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~~~  150 (170)
                      ++..+|++++|||++++.+++.  ...|+..+.... .+.|+++|+||+|+.+...+...   .+..++...+  +.+++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            5788999999999999887642  334555554332 47999999999999876666543   5667777777  89999


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +||++|.|++++|++|++
T Consensus       184 ~SA~~g~gi~~l~~~l~~  201 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACE  201 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHH
Confidence            999999999999998864

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.97  E-value=4.7e-30  Score=168.68  Aligned_cols=151  Identities=17%  Similarity=0.198  Sum_probs=114.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      ....++|+++|++|+|||||++++.++.+...+.++.+.+.....+...+  ..+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            45678999999999999999999999887766555555455444555555  4678999999999999999999999999


Q ss_pred             EEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-------C--CeEEEEec
Q 030880           86 VVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-------N--VMFIETSA  153 (170)
Q Consensus        86 i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~  153 (170)
                      ++|||++++   ++++.+       ......++|+++|+||+|+.+.   ..++........       +  +.++++||
T Consensus        83 i~v~d~~~~~~~~~~~~l-------~~~~~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  152 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVEAI-------NHAKAANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSA  152 (178)
T ss_dssp             EEEEETTCCCCHHHHHHH-------HHHGGGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred             EEEEECCCCCcHHHHHHH-------HHHHhCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence            999999884   333322       2222346899999999999653   223333333322       2  58999999


Q ss_pred             CCCCChHHHhhcCCC
Q 030880          154 KAGFNIKVCLMLHPN  168 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~  168 (170)
                      ++|.|++++|++|++
T Consensus       153 ~~~~gv~~l~~~l~~  167 (178)
T 2lkc_A          153 KTKEGLDHLLEMILL  167 (178)
T ss_dssp             SSSHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence            999999999998864

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.97  E-value=9e-31  Score=184.81  Aligned_cols=153  Identities=16%  Similarity=0.161  Sum_probs=117.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCC---cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---cchhhhcCCcE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDN---TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDSSV   84 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---~~~~~~~~~~~   84 (170)
                      ||+++|+.|+|||||++++.++..+.   ...++.+.+...    + +..+++++|||+|+++|..   .+..|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v-~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----F-STLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----E-CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----E-ccEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999888665432   234555544432    2 2347899999999999974   35889999999


Q ss_pred             EEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-------cccCHHHHHHHHhh----cCCeEEEE
Q 030880           85 AVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIEEGEAKSRE----LNVMFIET  151 (170)
Q Consensus        85 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~~  151 (170)
                      +|+|||++++  +.......|+..+... .+++|+++++||+|+.++       +++..++++++++.    .++.|++|
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999988  3333444445554443 368999999999999754       35667778888886    68999999


Q ss_pred             ecCCCCChHHHhhcCCCCC
Q 030880          152 SAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~~i  170 (170)
                      |+++ .+|.+.|..+++.+
T Consensus       155 SAkd-~nV~eAFs~iv~~l  172 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKL  172 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTS
T ss_pred             ccCC-CcHHHHHHHHHHHH
Confidence            9998 59999999887653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.97  E-value=2.3e-30  Score=172.57  Aligned_cols=159  Identities=15%  Similarity=0.156  Sum_probs=108.7

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~   72 (170)
                      ..+....++|+++|++|+|||||+++|.++.+.....++.+.+........++   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~   93 (195)
T 1svi_A           17 QYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWG   93 (195)
T ss_dssp             GSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHH
T ss_pred             hCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHH
Confidence            34455679999999999999999999998875444444433333222233333   689999999          66777


Q ss_pred             ccchhhhcCC---cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--HHHHH-HHhhcCC
Q 030880           73 SLIPSYIRDS---SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--EEGEA-KSRELNV  146 (170)
Q Consensus        73 ~~~~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~  146 (170)
                      ..+..+++.+   |++++|+|++++.++.... ++..+..   .+.|+++|+||+|+.+...+..  +++.+ +....++
T Consensus        94 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           94 RMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            7778888777   9999999999887766532 1122222   4689999999999976654432  33333 3334567


Q ss_pred             eEEEEecCCCCChHHHhhcCCC
Q 030880          147 MFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .++++|+++|.|++++|++|.+
T Consensus       170 ~~~~~Sa~~~~gv~~l~~~l~~  191 (195)
T 1svi_A          170 ELILFSSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHH
T ss_pred             ceEEEEccCCCCHHHHHHHHHH
Confidence            9999999999999999998864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=4e-30  Score=170.51  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=119.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc------ccchhh
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSY   78 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~   78 (170)
                      ++++.++|+++|++|+|||||+++|.+........++.+.+.....+...+  ..+.+|||||++.+.      .++..+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHH
Confidence            445789999999999999999999998765444445555555555555544  689999999998775      345555


Q ss_pred             hc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880           79 IR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        79 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (170)
                      ++  .++++++|+|.++   ++....|+..+..   .+.|+++++||+|+.....+. .++..+++..+++++++|++++
T Consensus        81 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~  153 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKK  153 (188)
T ss_dssp             HHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGT
T ss_pred             HhccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCC
Confidence            54  5999999999875   4555667666644   468999999999986554444 4567788888999999999999


Q ss_pred             CChHHHhhcCCC
Q 030880          157 FNIKVCLMLHPN  168 (170)
Q Consensus       157 ~~i~~~~~~l~~  168 (170)
                      .|++++|++|++
T Consensus       154 ~~v~~l~~~i~~  165 (188)
T 2wjg_A          154 MGIEELKKAISI  165 (188)
T ss_dssp             BSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999998754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.96  E-value=4.6e-30  Score=194.30  Aligned_cols=160  Identities=21%  Similarity=0.311  Sum_probs=122.4

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEE--------EECCeEEEEEEEeCCCcccccccch
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM--------YLEDRTVRLQLWDTAGQERFRSLIP   76 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~D~~g~~~~~~~~~   76 (170)
                      .+...+||+++|.+|+|||||++++.++.+...+.++.+.+......        ...+..+.+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            45678999999999999999999999988877777777766654421        1123467899999999999999999


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (170)
                      .+++++|++++|||+++.   +....|+..+.... .+.|+++|+||+|+.+...+..+++..++...+++++++||++|
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g  192 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG  192 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence            999999999999998765   55677888887765 47999999999999887888888899999999999999999999


Q ss_pred             CChHHHhhcCCC
Q 030880          157 FNIKVCLMLHPN  168 (170)
Q Consensus       157 ~~i~~~~~~l~~  168 (170)
                      .|++++|++|.+
T Consensus       193 ~gi~eL~~~l~~  204 (535)
T 3dpu_A          193 DGVESIAKSLKS  204 (535)
T ss_dssp             --CTTHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            999999998754

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.96  E-value=1e-29  Score=166.52  Aligned_cols=151  Identities=19%  Similarity=0.181  Sum_probs=111.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSY   78 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~   78 (170)
                      ...+|+++|++|+|||||+++|.+.... ....++.+.+.....+..++  ..+.+|||||++++...        ...+
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQE   80 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHH
Confidence            4579999999999999999999987542 12233344455555555665  35889999998754221        1235


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ++++|++++|||++++.+++ ...|+..+......++|+++|+||+|+.++..       .++...+..++++||++|.|
T Consensus        81 ~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g  152 (172)
T 2gj8_A           81 IEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG  152 (172)
T ss_dssp             HHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred             HHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence            78999999999999988865 45677777766556799999999999853211       12333567999999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|++|.+
T Consensus       153 v~~l~~~l~~  162 (172)
T 2gj8_A          153 VDVLRNHLKQ  162 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.96  E-value=2.3e-29  Score=162.82  Aligned_cols=149  Identities=18%  Similarity=0.131  Sum_probs=104.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRD   81 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~   81 (170)
                      .||+++|++|+|||||++++.++... ....+..+.+.........+  ..+.+||+||+..+       ...+..+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~   79 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED   79 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence            58999999999999999999987643 22233333344444454554  37899999998873       3445667899


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCChH
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFNIK  160 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~  160 (170)
                      +|++++|+|++++.+...  .++......  .+.|+++|+||+|+.+..    +++.+++ ..++ .++++|+++|.|++
T Consensus        80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~  150 (161)
T 2dyk_A           80 AEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLE  150 (161)
T ss_dssp             CSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHH
T ss_pred             CCEEEEEEECCCcccHhH--HHHHHHHHh--cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChH
Confidence            999999999998643322  222222222  368999999999996552    3344445 5677 89999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.+.
T Consensus       151 ~l~~~l~~~  159 (161)
T 2dyk_A          151 ELLEAIWER  159 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.96  E-value=7.7e-30  Score=169.26  Aligned_cols=150  Identities=23%  Similarity=0.274  Sum_probs=114.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC-----------cccccccchhh
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-----------QERFRSLIPSY   78 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g-----------~~~~~~~~~~~   78 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+.....  ....    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            689999999999999999999988766655554433322  2222    689999999           56677777778


Q ss_pred             hcC-CcEEEEEEeCCChhhHHhH-HHHHHH--------H-HHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCe
Q 030880           79 IRD-SSVAVVVYDVASRQSFLNT-SKWIDE--------V-RTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVM  147 (170)
Q Consensus        79 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      +++ +++++++|++.+..+++.+ ..|...        + ......++|+++|+||+|+.+..   .+++..+++.++++
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~  152 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEVP  152 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTCC
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhhh
Confidence            877 8888888888878888776 556542        2 22223579999999999997654   56678888888864


Q ss_pred             -------EEEEecCCCCChHHHhhcCCC
Q 030880          148 -------FIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       148 -------~~~~s~~~~~~i~~~~~~l~~  168 (170)
                             ++++||++|.|++++|++|.+
T Consensus       153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  180 (190)
T 2cxx_A          153 LSEIDKVFIPISAKFGDNIERLKNRIFE  180 (190)
T ss_dssp             GGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             hhccCCcEEEEecCCCCCHHHHHHHHHH
Confidence                   799999999999999998864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.96  E-value=1.1e-28  Score=171.07  Aligned_cols=153  Identities=16%  Similarity=0.158  Sum_probs=116.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc------hhhh-
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI------PSYI-   79 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~------~~~~-   79 (170)
                      .+.++|+++|++|+|||||+++|++........+..+.+.....+...  ...+.+||+||+..+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            456899999999999999999999877644444444444444444333  3689999999988776532      4555 


Q ss_pred             -cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           80 -RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        80 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                       .++|++++|+|+++.++..   .|...+..   .++|+++++||+|+.....+. .+...+++.++++++++||++|.|
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~g  153 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEG  153 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTT
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcC
Confidence             5899999999999876543   24444433   469999999999987655544 247788888999999999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|++|.+
T Consensus       154 i~el~~~i~~  163 (258)
T 3a1s_A          154 LEELKEKIVE  163 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998753

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.96  E-value=2.7e-28  Score=173.15  Aligned_cols=161  Identities=12%  Similarity=0.121  Sum_probs=122.2

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----------
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----------   72 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----------   72 (170)
                      +++.+.-.|+++|.+|+|||||+|+|++..+... ..+..+........... ....+.+|||||+.++.          
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~   83 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMV   83 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHH
Confidence            4566778999999999999999999999876422 22223223222222222 14689999999986544          


Q ss_pred             ccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEE
Q 030880           73 SLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIE  150 (170)
Q Consensus        73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~  150 (170)
                      .....+++.+|++++|+|++++.+......|+..+..   .+.|+++|+||+|+.............+.+.++  ..+++
T Consensus        84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~---~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP---LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG---GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh---cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence            4566778899999999999998888887777777665   358999999999997444455677777887775  78999


Q ss_pred             EecCCCCChHHHhhcCCC
Q 030880          151 TSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       151 ~s~~~~~~i~~~~~~l~~  168 (170)
                      +||++|.|++++|++|.+
T Consensus       161 vSA~~g~gv~~L~~~l~~  178 (308)
T 3iev_A          161 ISALKGANLDELVKTILK  178 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHH
Confidence            999999999999998754

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.96  E-value=6.1e-29  Score=172.09  Aligned_cols=150  Identities=14%  Similarity=0.152  Sum_probs=115.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc----------cchhhh
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----------LIPSYI   79 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----------~~~~~~   79 (170)
                      .+|+++|.+|+|||||+|+|++........++.+.+.....+...+  ..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999998865444455555566555565555  3799999999887764          445566


Q ss_pred             --cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           80 --RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        80 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                        +++|++++|+|+++.++...+..++.      ..+.|+++|+||+|+.+..... .....+.+.++++++++||++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~------~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~  152 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLF------ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNI  152 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHT------TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTB
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHH------HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCC
Confidence              89999999999998766555444332      2469999999999986554332 22455777889999999999999


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|++|.+
T Consensus       153 gi~el~~~i~~  163 (256)
T 3iby_A          153 GIPALQQSLLH  163 (256)
T ss_dssp             SHHHHHHHHHT
T ss_pred             CHHHHHHHHHh
Confidence            99999998865

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.95  E-value=6.4e-29  Score=173.18  Aligned_cols=150  Identities=14%  Similarity=0.166  Sum_probs=113.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc------ccchhhhc--
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR------SLIPSYIR--   80 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~------~~~~~~~~--   80 (170)
                      .++|+++|++|+|||||+++|.+........+..+.+.  ....+.. ...+.+|||||+..+.      .+...++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~--~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVER--KSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSC--EEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEE--EEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            57999999999999999999998764333334333332  2333344 5679999999998775      34566665  


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      ++|++++|+|+++.++..   .|...+..   .++|+++++||+|+.....+. .+...+++.++++++++||++|.|++
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~  152 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---YLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD  152 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---HHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred             CCCEEEEEecCCchHhHH---HHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence            699999999998875543   34444443   469999999999986554444 35677888889999999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      ++|++|.+
T Consensus       153 el~~~i~~  160 (272)
T 3b1v_A          153 QVVKKAAH  160 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.95  E-value=2.4e-28  Score=162.59  Aligned_cols=156  Identities=19%  Similarity=0.266  Sum_probs=110.8

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------ccccc
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFR   72 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~   72 (170)
                      ..+....++|+++|++|+|||||+++++++... ...++.+.+..........   .+.+|||||          ++.+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHH
Confidence            445566789999999999999999999988733 2233332222222222222   578999999          56666


Q ss_pred             ccchhhhcCC---cEEEEEEeCCChhh--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--ccCHHHHHHHHhhcC
Q 030880           73 SLIPSYIRDS---SVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIEEGEAKSRELN  145 (170)
Q Consensus        73 ~~~~~~~~~~---~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~  145 (170)
                      ..+..+++.+   |++++|+|+++..+  ...+..|+...      +.|+++|+||+|+.++.  ....+++..++...+
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            7777777766   99999999887633  33333444332      68999999999996543  233455666666644


Q ss_pred             -CeEEEEecCCCCChHHHhhcCCC
Q 030880          146 -VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       146 -~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                       ++++++||++|.|++++|++|.+
T Consensus       167 ~~~~~~~Sa~~~~gv~~l~~~l~~  190 (195)
T 3pqc_A          167 EYTIIPTSSVTGEGISELLDLIST  190 (195)
T ss_dssp             CSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHH
Confidence             79999999999999999999865

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.95  E-value=9e-29  Score=172.97  Aligned_cols=153  Identities=18%  Similarity=0.216  Sum_probs=114.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc----------chh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL----------IPS   77 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~----------~~~   77 (170)
                      +.++|+++|.+|+|||||+|+|++........+..+.+.....+...+  ..+.+|||||+..+...          ...
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHH
Confidence            568999999999999999999998875444455555555555554444  46889999998876631          223


Q ss_pred             hh--cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           78 YI--RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      ++  +++|++++|+|+++.++...+..++.+.      ++|+++|+||+|+.+..... .....+++.++++++++||++
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~------~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~  152 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQLLEL------GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR  152 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH------TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHHHHhc------CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence            32  6999999999999876655544444332      59999999999986544332 235667788899999999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      |.|++++|++|.+.
T Consensus       153 g~gi~el~~~i~~~  166 (274)
T 3i8s_A          153 GRGIEALKLAIDRY  166 (274)
T ss_dssp             GHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998664

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=4.4e-29  Score=169.17  Aligned_cols=147  Identities=18%  Similarity=0.210  Sum_probs=107.8

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhh
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYI   79 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~   79 (170)
                      .......++|+++|++|+|||||+++|.++.+...   +.++.+.+         .....+.+||+||++.+...+..++
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~Dt~G~~~~~~~~~~~~   76 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD---------YDGSGVTLVDFPGHVKLRYKLSDYL   76 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT---------GGGSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE---------eeCceEEEEECCCcHHHHHHHHHHH
Confidence            34455679999999999999999999998876432   23332211         1445799999999999988888888


Q ss_pred             cC----CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCccccC------HHHHHHHHhhc
Q 030880           80 RD----SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSREL  144 (170)
Q Consensus        80 ~~----~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~  144 (170)
                      +.    +|++++|||++ +++++.....|+..+...    ...++|+++|+||+|+.+...+.      .+++..++...
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            87    89999999999 889999988888887664    34689999999999997665443      45567777777


Q ss_pred             CCeEEEEecCCCCC
Q 030880          145 NVMFIETSAKAGFN  158 (170)
Q Consensus       145 ~~~~~~~s~~~~~~  158 (170)
                      ++.++++|+++|.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            78888899888765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.95  E-value=4.7e-28  Score=164.60  Aligned_cols=159  Identities=13%  Similarity=0.099  Sum_probs=105.7

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCcccceeeeEEEEEEEEEC-CeEEEEEEEeCCCc----------cc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQ----------ER   70 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~g~----------~~   70 (170)
                      .+....++|+++|.+|+|||||+++|+++..  .....+..+....  ..... .....+.+|||||.          +.
T Consensus        24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~  101 (223)
T 4dhe_A           24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAH  101 (223)
T ss_dssp             SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHH
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHH
Confidence            3445678999999999999999999998863  2122222222222  22222 33467999999994          33


Q ss_pred             ccccchhhhcC---CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHhh--
Q 030880           71 FRSLIPSYIRD---SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE--  143 (170)
Q Consensus        71 ~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~--  143 (170)
                      +......+++.   +|++++|+|++++.+. ....++..+..   .++|+++|+||+|+.+.....  .++..+....  
T Consensus       102 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~  177 (223)
T 4dhe_A          102 WEQLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR  177 (223)
T ss_dssp             HHHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh
Confidence            34455566655   7889999999875332 22334444433   468999999999997544321  1222233322  


Q ss_pred             -----cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          144 -----LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       144 -----~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                           .+++++++||++|.|++++|++|.+
T Consensus       178 ~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  207 (223)
T 4dhe_A          178 DAGYAGKLTVQLFSALKRTGLDDAHALIES  207 (223)
T ss_dssp             HHTCCSCEEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hcccCCCCeEEEeecCCCcCHHHHHHHHHH
Confidence                 5679999999999999999998854

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.95  E-value=2.5e-27  Score=165.56  Aligned_cols=153  Identities=20%  Similarity=0.196  Sum_probs=115.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------cchhhh--
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------LIPSYI--   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------~~~~~~--   79 (170)
                      +.++|+++|++|+|||||+++|++........++.+.+.........+  ..+.+||+||+..+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            468999999999999999999998876444455555565555555555  4599999999887766      455555  


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      .++|++++|+|+++.+.   ...|...+...  ...|+++++||+|+.+....... ...+.+.++++++++|+++|.|+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi  153 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEM--EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGV  153 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHT--TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhc--CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCH
Confidence            68999999999987632   22333333332  23899999999998654444332 67788889999999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|+++.+
T Consensus       154 ~~l~~~i~~  162 (271)
T 3k53_A          154 EELKRMIAL  162 (271)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.94  E-value=2.9e-26  Score=161.99  Aligned_cols=155  Identities=15%  Similarity=0.103  Sum_probs=107.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--------ccccchh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--------FRSLIPS   77 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--------~~~~~~~   77 (170)
                      .+..+|+++|.+|+|||||+|+|++..... ...+.++.........  .....+.+|||||..+        +......
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~   82 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYE   82 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence            556789999999999999999999987642 2223222222222222  2346899999999876        3345566


Q ss_pred             hhcCCcEEEEEEeCCChhhHHhHHHHH-HHHHHhcCCCCeEEEEEeCCCCCCccc-cCHHHHHHHHhhcCCeEEEEecCC
Q 030880           78 YIRDSSVAVVVYDVASRQSFLNTSKWI-DEVRTERGSDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      +++.+|++++|+|++++.+..  ..|+ ..+.... .++|+++|+||+|+.+... + .+.+..+  .....++++||++
T Consensus        83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~--~~~~~~~~iSA~~  156 (301)
T 1wf3_A           83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPLV-GKVPILLVGNKLDAAKYPEEA-MKAYHEL--LPEAEPRMLSALD  156 (301)
T ss_dssp             HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT-TTSCEEEEEECGGGCSSHHHH-HHHHHHT--STTSEEEECCTTC
T ss_pred             HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc-CCCCEEEEEECcccCCchHHH-HHHHHHh--cCcCcEEEEeCCC
Confidence            789999999999998774433  3443 3444332 4799999999999865433 1 1222222  1234799999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      |.|++++|++|.+.
T Consensus       157 g~gv~~l~~~l~~~  170 (301)
T 1wf3_A          157 ERQVAELKADLLAL  170 (301)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.94  E-value=1.9e-27  Score=174.30  Aligned_cols=156  Identities=18%  Similarity=0.153  Sum_probs=112.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc-------ch
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL-------IP   76 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~-------~~   76 (170)
                      +....++|+++|..++|||||+++|++..+. ....+..+.+.........+.. .+.+|||||++.+..+       ..
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence            4456789999999999999999999987753 2223344445555555555443 7999999999877654       34


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCC
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  156 (170)
                      .+++++|++++|+|++..+.   ...|+..+...   ++|+++|+||+|+.+....  +...++++.++++++++||++|
T Consensus       109 ~~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg  180 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPTPY---EDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQK  180 (423)
T ss_dssp             HHHTSCSEEEEECSSSCCHH---HHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCT
T ss_pred             HHHhcCCEEEEEEeCCChHH---HHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCC
Confidence            57889999999999843322   34555555543   6999999999999766544  6677788888999999999999


Q ss_pred             CChHHHhhcCCCC
Q 030880          157 FNIKVCLMLHPNT  169 (170)
Q Consensus       157 ~~i~~~~~~l~~~  169 (170)
                      .|++++|++|.+.
T Consensus       181 ~gI~eL~~~L~~~  193 (423)
T 3qq5_A          181 KGFDDIGKTISEI  193 (423)
T ss_dssp             TSTTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999988653

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.94  E-value=3e-26  Score=170.41  Aligned_cols=153  Identities=14%  Similarity=0.124  Sum_probs=95.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------hhhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI   79 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   79 (170)
                      .++|+++|.+|+|||||+|+|.+... .....+.++.+.....+..++  ..+.+|||||++++...+        ..++
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            57899999999999999999998753 233345555566556666655  579999999987765433        3467


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      +++|++++|+|++++.+++....+...+...  .++|+++|+||+|+.+.....   ...+.+....+++++|+++|.|+
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI  385 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAH--PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGI  385 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhc--CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCH
Confidence            8999999999999988776443333322222  269999999999997654432   23343332378999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|++|.+
T Consensus       386 ~eL~~~i~~  394 (476)
T 3gee_A          386 DTLKQHMGD  394 (476)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.93  E-value=1.2e-25  Score=162.56  Aligned_cols=157  Identities=18%  Similarity=0.153  Sum_probs=116.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc---------cchh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---------LIPS   77 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------~~~~   77 (170)
                      ...++++++|.+|+|||||+++|.+........+..+...........  ...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            456899999999999999999999876432222222223322222222  45799999999754321         1123


Q ss_pred             hhcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880           78 YIRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      +...+|++++|+|++++.  +++....|+..+..... +.|+++|+||+|+.+...+  +++..++...+++++++||++
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~  319 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALK  319 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCC
Confidence            345799999999999887  67888888888877653 7999999999999765432  456667777889999999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      |+|++++|++|.+
T Consensus       320 g~gi~~l~~~i~~  332 (357)
T 2e87_A          320 GTGIDLVKEEIIK  332 (357)
T ss_dssp             TBTHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHH
Confidence            9999999998864

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=2.9e-26  Score=169.68  Aligned_cols=156  Identities=19%  Similarity=0.166  Sum_probs=109.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc----------cccccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLI   75 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~   75 (170)
                      ...++|+++|.+|+|||||+|++++.... ....+.++.+.....+..++.  .+.+|||||+.          .|....
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  250 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  250 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence            35689999999999999999999987653 233444445555555555553  58999999973          333333


Q ss_pred             h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHH-----HHhhcCCeEE
Q 030880           76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFI  149 (170)
Q Consensus        76 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~  149 (170)
                      . .+++.+|++++|+|++++.+++.. .|+..+..   .++|+++|+||+|+.+......++..+     +....+++++
T Consensus       251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~  326 (436)
T 2hjg_A          251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  326 (436)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence            2 478899999999999998887665 45555543   469999999999997665543333322     2223367999


Q ss_pred             EEecCCCCChHHHhhcCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++||++|.|++++|+.+.+
T Consensus       327 ~~SA~tg~~v~~l~~~i~~  345 (436)
T 2hjg_A          327 FMSALTKKRIHTLMPAIIK  345 (436)
T ss_dssp             ECCTTTCTTGGGHHHHHHH
T ss_pred             EEecccCCCHHHHHHHHHH
Confidence            9999999999999987653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.93  E-value=8.9e-26  Score=167.95  Aligned_cols=156  Identities=21%  Similarity=0.211  Sum_probs=112.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCC----------cccccccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG----------QERFRSLI   75 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g----------~~~~~~~~   75 (170)
                      ...++|+++|.+++|||||++++++... .....++++.+.....+...+.  .+.+|||||          ++.|....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence            4568999999999999999999997642 2223344444444444555553  799999999          56665554


Q ss_pred             h-hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-----CCeEE
Q 030880           76 P-SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-----NVMFI  149 (170)
Q Consensus        76 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~  149 (170)
                      . .+++.+|++++|+|++++.+. ....|+..+..   .++|+++|+||+|+.+......+++.+.+++.     +++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~-~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIE-QDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL  346 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCH-HHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEE
Confidence            4 468899999999999875332 22334444433   46999999999999877666666666666554     57999


Q ss_pred             EEecCCCCChHHHhhcCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++||++|.|++++|+++.+
T Consensus       347 ~~SA~~g~gv~~l~~~i~~  365 (456)
T 4dcu_A          347 FMSALTKKRIHTLMPAIIK  365 (456)
T ss_dssp             ECCTTTCTTGGGHHHHHHH
T ss_pred             EEcCCCCcCHHHHHHHHHH
Confidence            9999999999999998754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.92  E-value=3.5e-26  Score=164.30  Aligned_cols=112  Identities=18%  Similarity=0.232  Sum_probs=96.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D  125 (170)
                      .+.+.+||++|++.++..|..|+++++++|+|||+++          .+++++...|+..+..... .++|++|++||+|
T Consensus       192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~D  271 (353)
T 1cip_A          192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKD  271 (353)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcC
Confidence            5789999999999999999999999999999999998          5689999999988876533 6799999999999


Q ss_pred             CCCcc---------------ccCHHHHHHHHh-----------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          126 LVEKR---------------QVSIEEGEAKSR-----------ELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       126 ~~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +.++.               .++.+++..++.           ..++.+++|||+++.||+++|+++.+
T Consensus       272 L~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          272 LFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             HHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             chhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            85332               356788888886           35678999999999999999998764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.92  E-value=2.2e-24  Score=158.19  Aligned_cols=162  Identities=15%  Similarity=0.069  Sum_probs=115.5

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEE-------EE---------E---ECCeEEEEEEEe
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK-------TM---------Y---LEDRTVRLQLWD   64 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~---~~~~~~~~~i~D   64 (170)
                      .+..+.++|+++|++++|||||+++|++........... ......       ..         .   .......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAE-TNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEE-EEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccc-cceeeccccccccceecccccccccccccccccceEEEEE
Confidence            345677999999999999999999999754332111000 000000       00         0   011236899999


Q ss_pred             CCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHh
Q 030880           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSR  142 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~  142 (170)
                      |||++.|...+..+++.+|++++|+|++++.++.....++..+....  ..|+++++||+|+.+....  ..++..++..
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  159 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTK  159 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998876777777776665543  2589999999999754322  1233344443


Q ss_pred             hc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          143 EL---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       143 ~~---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..   +++++++||++|.|+++++++|.+
T Consensus       160 ~~~~~~~~ii~vSA~~g~gi~~L~~~l~~  188 (403)
T 3sjy_A          160 GTWAENVPIIPVSALHKINIDSLIEGIEE  188 (403)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             hhCCCCCEEEEEECCCCcChHHHHHHHHH
Confidence            33   568999999999999999998754

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.92  E-value=6.8e-26  Score=162.25  Aligned_cols=153  Identities=20%  Similarity=0.141  Sum_probs=112.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccchhhhc---CCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPSYIR---DSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~~~~---~~~   83 (170)
                      +|+++|.+++|||||+++|.+........+..+.......+..++ ...+.+||+||..+    +..+...+++   +++
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d  238 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR  238 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence            688999999999999999998653211122222222222333333 24799999999543    3334455544   599


Q ss_pred             EEEEEEeCCC---hhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCC
Q 030880           84 VAVVVYDVAS---RQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAG  156 (170)
Q Consensus        84 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  156 (170)
                      ++++|+|+++   +++++....|+.++..+..  .++|+++|+||+|+....    +....+.+.++  .+++++||+++
T Consensus       239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECCCC
Confidence            9999999998   7889999999999887652  579999999999986432    34566666666  68999999999


Q ss_pred             CChHHHhhcCCC
Q 030880          157 FNIKVCLMLHPN  168 (170)
Q Consensus       157 ~~i~~~~~~l~~  168 (170)
                      .|++++|++|.+
T Consensus       315 ~gi~eL~~~l~~  326 (342)
T 1lnz_A          315 EGLRELLFEVAN  326 (342)
T ss_dssp             STTHHHHHHHHH
T ss_pred             cCHHHHHHHHHH
Confidence            999999998754

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.92  E-value=3.5e-25  Score=164.86  Aligned_cols=149  Identities=20%  Similarity=0.252  Sum_probs=111.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcc-cccc--------cchhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE-RFRS--------LIPSY   78 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-~~~~--------~~~~~   78 (170)
                      .++|+++|.+|+|||||+|+|.+... .....+.++.+.....+..++  ..+.+|||||.. ++..        ....+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~  320 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE  320 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence            37999999999999999999998753 233345555566666666655  568999999987 5542        23456


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  158 (170)
                      ++++|++++|+|++++.+++... ++..+     .++|+++|+||+|+.+.  ...+++..+.. .+++++++|+++|.|
T Consensus       321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~G  391 (482)
T 1xzp_A          321 IEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEG  391 (482)
T ss_dssp             HHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCC
T ss_pred             hhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCC
Confidence            88999999999999887775532 22222     36899999999999643  34455555432 446899999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++|++|.+
T Consensus       392 i~eL~~~l~~  401 (482)
T 1xzp_A          392 LEKLEESIYR  401 (482)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.92  E-value=2.2e-24  Score=158.46  Aligned_cols=160  Identities=21%  Similarity=0.187  Sum_probs=103.1

Q ss_pred             CcCCCCceeEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--eeeeEEEEEEEEE-------------C--C----eEE
Q 030880            3 PVSALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTV   58 (170)
Q Consensus         3 ~~~~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~   58 (170)
                      +++....++|+++|+.++|||||+++|.+..   +..+..+  |....+.......             +  +    ...
T Consensus         2 p~~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~   81 (408)
T 1s0u_A            2 PLGSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR   81 (408)
T ss_dssp             ---CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEE
T ss_pred             CcccCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCccccccc
Confidence            3455677999999999999999999998542   2222223  2222222222211             1  1    137


Q ss_pred             EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--c
Q 030880           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--V  132 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~  132 (170)
                      .+.+|||||++.|...+...+..+|++++|+|++++    ++.+.+..    +...  ...|+++++||+|+.+...  .
T Consensus        82 ~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l--~~~~iivv~NK~Dl~~~~~~~~  155 (408)
T 1s0u_A           82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----LEIL--GIDKIIIVQNKIDLVDEKQAEE  155 (408)
T ss_dssp             EEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----HHHT--TCCCEEEEEECTTSSCTTTTTT
T ss_pred             EEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----HHHc--CCCeEEEEEEccCCCCHHHHHH
Confidence            899999999999988888888899999999999853    44444332    2222  2257999999999976543  2


Q ss_pred             CHHHHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          133 SIEEGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       133 ~~~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..+++.++++..   +++++++||++|.|+++++++|.+
T Consensus       156 ~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  194 (408)
T 1s0u_A          156 NYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQD  194 (408)
T ss_dssp             HHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            346667776653   579999999999999999998754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.92  E-value=1.5e-25  Score=158.95  Aligned_cols=113  Identities=15%  Similarity=0.154  Sum_probs=95.4

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  124 (170)
                      ..+++.+||++|++.++..|..|+++++++|+|||++          +.+++.+...|+..+..... .++|+++++||+
T Consensus       165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~  244 (327)
T 3ohm_A          165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKK  244 (327)
T ss_dssp             TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECH
T ss_pred             eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECc
Confidence            3478999999999999999999999999999999665          66889888888888866543 689999999999


Q ss_pred             CCCCcc----------------ccCHHHHHHHH----------hhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          125 DLVEKR----------------QVSIEEGEAKS----------RELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       125 D~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |+.+++                ..+.+++..++          ...++.+++|||+++.||+++|+.+.+
T Consensus       245 DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          245 DLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             HHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            986543                46778888884          355678899999999999999988754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.91  E-value=2.3e-24  Score=160.98  Aligned_cols=155  Identities=20%  Similarity=0.179  Sum_probs=108.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCC-------CCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS   77 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~   77 (170)
                      ..++.++|+++|..++|||||+++|.+..       ...+..+..+.+.....+..++  ..+.+|||||++.|...+..
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHH
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHH
Confidence            34567999999999999999999999866       2222222233333223333333  68999999999999888889


Q ss_pred             hhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhc----CCeE
Q 030880           78 YIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSREL----NVMF  148 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~  148 (170)
                      ++..+|++++|+|+++   +++.+.+.    .+..   .++|.++++||+|+.++..  ...+++..+....    ++++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~i  165 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHML----ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSI  165 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCE
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHH----HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceE
Confidence            9999999999999987   44443332    2222   3588899999999975322  1234455565555    5789


Q ss_pred             EEEecCCCCChHHHhhcCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +++||++|.|+++++++|.+
T Consensus       166 i~vSA~~g~gI~~L~~~L~~  185 (482)
T 1wb1_A          166 IPISAKTGFGVDELKNLIIT  185 (482)
T ss_dssp             EECCTTTCTTHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            99999999999999988754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.91  E-value=4.7e-25  Score=158.39  Aligned_cols=113  Identities=19%  Similarity=0.177  Sum_probs=91.0

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~  124 (170)
                      ..+++.+|||+|++.++..|..++++++++|+|||++          +.+++++...|+..+.... ..++|++|++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          7889999999998887654 2689999999999


Q ss_pred             CCCCccc--c-------------------CHHHHHHHHhh----------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880          125 DLVEKRQ--V-------------------SIEEGEAKSRE----------------LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       125 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |+.+++.  +                   +.+++..++..                ..+.+++|||+++.||+++|++++
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321  1                   24666666432                234568999999999999999876


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       341 ~  341 (354)
T 2xtz_A          341 E  341 (354)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.91  E-value=5.3e-24  Score=157.51  Aligned_cols=157  Identities=16%  Similarity=0.181  Sum_probs=105.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEEC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (170)
                      ....+||+++|.+++|||||+++|++...                               ..+..+..+.+.....+.  
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~--   91 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE--   91 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe--
Confidence            34568999999999999999999965311                               011112233333333333  


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhh---HHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcc
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---FLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR  130 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~  130 (170)
                      .....+.+|||||+++|...+..+++.+|++++|+|+++...   |+...++...+......++| +++++||+|+....
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence            334689999999999999999999999999999999987532   22112222222222224566 89999999985321


Q ss_pred             ------ccCHHHHHHHHhhcC------CeEEEEecCCCCChHHHhh
Q 030880          131 ------QVSIEEGEAKSRELN------VMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus       131 ------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~  164 (170)
                            ....++...+.+..+      ++++++||++|.|++++++
T Consensus       172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                  112234445555544      4799999999999998654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.91  E-value=9.4e-25  Score=152.73  Aligned_cols=161  Identities=12%  Similarity=0.176  Sum_probs=92.5

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-c-------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccc----
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-Y-------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF----   71 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~----   71 (170)
                      ++....++|+++|.+|+|||||+|+|++...... +       .++.+.+.........+..+.+.+|||||....    
T Consensus         3 ~~~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~   82 (274)
T 3t5d_A            3 LGSGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS   82 (274)
T ss_dssp             ----CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT
T ss_pred             CcCccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch
Confidence            3445679999999999999999999887654332 2       344455555555544555679999999997422    


Q ss_pred             ---cccc-------hhhhc-------------CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           72 ---RSLI-------PSYIR-------------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        72 ---~~~~-------~~~~~-------------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                         ..+.       ..++.             ++|+++++++.+..........++..+..    ++|+++|+||+|+..
T Consensus        83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~  158 (274)
T 3t5d_A           83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLT  158 (274)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSC
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCC
Confidence               1111       22222             37889999987653222222334444432    699999999999865


Q ss_pred             ccccC--HHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          129 KRQVS--IEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       129 ~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..+..  ...+.+.....++.++.+|+++++|+++++++|.+
T Consensus       159 ~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~  200 (274)
T 3t5d_A          159 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  200 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence            43322  23455566677899999999999999999888754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.91  E-value=4.9e-24  Score=157.92  Aligned_cols=147  Identities=19%  Similarity=0.225  Sum_probs=99.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchhhh
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI   79 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   79 (170)
                      .+|+++|.+++|||||+|+|+++... ....+..+.+.........+.  .+.+|||||.+..         ...+..++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence            37999999999999999999987642 223444444555555555553  5889999997642         33456678


Q ss_pred             cCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH-HHHHhhcCC-eEEEEecCC
Q 030880           80 RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG-EAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~  155 (170)
                      +++|++++|+|++++.+...  +..|+..      .++|+++|+||+|+...  . ..++ .++. .+++ .++++||++
T Consensus        80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~  149 (439)
T 1mky_A           80 READLVLFVVDGKRGITKEDESLADFLRK------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEH  149 (439)
T ss_dssp             TTCSEEEEEEETTTCCCHHHHHHHHHHHH------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred             HhCCEEEEEEECCCCCCHHHHHHHHHHHH------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence            99999999999987644332  3333322      25899999999998532  1 1223 3443 5676 789999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      |.|++++|+++.+
T Consensus       150 g~gv~~L~~~i~~  162 (439)
T 1mky_A          150 NINLDTMLETIIK  162 (439)
T ss_dssp             TBSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
Confidence            9999999998753

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.91  E-value=8.8e-24  Score=160.44  Aligned_cols=156  Identities=20%  Similarity=0.254  Sum_probs=110.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc---------c----cceeeeEEEEEEEEE---CCeEEEEEEEeCCCc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT---------Y----QATIGIDFLSKTMYL---EDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~---------~----~~~~~~~~~~~~~~~---~~~~~~~~i~D~~g~   68 (170)
                      ....||+++|+.++|||||+++|+..  .....         .    ....+.......+.+   ++..+.+++|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            34579999999999999999999863  11100         0    000111111111111   455689999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC--
Q 030880           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV--  146 (170)
Q Consensus        69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--  146 (170)
                      ..|...+..+++.+|++++|+|+++..+.+....|.....    .++|+++++||+|+.+..  ......++...+++  
T Consensus        84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~  157 (600)
T 2ywe_A           84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP  157 (600)
T ss_dssp             GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred             HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence            9999989999999999999999999877777666655442    468999999999996543  22334556666666  


Q ss_pred             -eEEEEecCCCCChHHHhhcCCC
Q 030880          147 -MFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       147 -~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                       .++.+||++|.|++++|++|.+
T Consensus       158 ~~vi~vSAktg~GI~~Lle~I~~  180 (600)
T 2ywe_A          158 EEAILASAKEGIGIEEILEAIVN  180 (600)
T ss_dssp             GGCEECBTTTTBSHHHHHHHHHH
T ss_pred             ccEEEEEeecCCCchHHHHHHHH
Confidence             4899999999999999998754

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.91  E-value=5.1e-24  Score=161.95  Aligned_cols=154  Identities=18%  Similarity=0.207  Sum_probs=106.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC--CCC---------cc--cceeeeEEEE--EEEEE---CCeEEEEEEEeCCCccc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDK--FDN---------TY--QATIGIDFLS--KTMYL---EDRTVRLQLWDTAGQER   70 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~--~~~---------~~--~~~~~~~~~~--~~~~~---~~~~~~~~i~D~~g~~~   70 (170)
                      ..||+++|+.++|||||+++|+...  ...         ..  ....+.+...  ..+.+   ++..+.+++|||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4689999999999999999998631  110         00  0011112211  12212   45578999999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC---e
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV---M  147 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~  147 (170)
                      |...+..+++.+|++++|+|+++..+.+....|.....    .++|+++++||+|+.+..  ......++...+++   .
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~  157 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATD  157 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcce
Confidence            99999999999999999999998766666666655442    468999999999996543  22334556666666   4


Q ss_pred             EEEEecCCCCChHHHhhcCCC
Q 030880          148 FIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++.+||++|.|++++|++|.+
T Consensus       158 vi~vSAktg~GI~~Ll~~I~~  178 (599)
T 3cb4_D          158 AVRCSAKTGVGVQDVLERLVR  178 (599)
T ss_dssp             CEEECTTTCTTHHHHHHHHHH
T ss_pred             EEEeecccCCCchhHHHHHhh
Confidence            899999999999999998754

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.91  E-value=3.1e-24  Score=147.38  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=102.2

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccc--eeeeEEEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQA--TIGIDFLSKTMYLEDRTVRLQLWDTAGQE-----------RF   71 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~g~~-----------~~   71 (170)
                      +....++|+++|++|+|||||++++++........+  +.+...........+  ..+.+|||||..           .+
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHH
Confidence            345679999999999999999999999877655444  333344444444444  578999999943           33


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhh--HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC------HHHHHHHHhh
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQS--FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS------IEEGEAKSRE  143 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~  143 (170)
                      ......+++++|++++|+|+++...  ...+..+...+...  ...|+++|+||+|+.+...+.      .+.+..+.+.
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            4444555678899999999875433  22222222222222  236899999999986554333      2457788888


Q ss_pred             cCCeEEEEecCCC-----CChHHHhhcCC
Q 030880          144 LNVMFIETSAKAG-----FNIKVCLMLHP  167 (170)
Q Consensus       144 ~~~~~~~~s~~~~-----~~i~~~~~~l~  167 (170)
                      .+..++.++...+     .++.++|+.+.
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~  209 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQ  209 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHH
Confidence            8888888877654     68888887653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.91  E-value=6.2e-24  Score=150.23  Aligned_cols=156  Identities=15%  Similarity=0.179  Sum_probs=107.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcc---------cccccch
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE---------RFRSLIP   76 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~---------~~~~~~~   76 (170)
                      .+..+|+++|++|+|||||+|++++..... ...+..+.........  .....+.+|||||+.         .+.....
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~--~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT--EGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE--ETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE--ECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            445689999999999999999999876532 1122222121111122  234579999999987         2344456


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      .+++.+|++++|+|+++   +.....++.....  ..+.|+++++||+|+........+.+..+.+.++. .++++|+++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~  158 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  158 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCC
Confidence            77889999999999876   3233334333222  24699999999999865222233555666666776 799999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      +.|++++++.+.+.
T Consensus       159 g~~v~~l~~~i~~~  172 (301)
T 1ega_A          159 GLNVDTIAAIVRKH  172 (301)
T ss_dssp             TTTHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999988653

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.91  E-value=3e-24  Score=149.09  Aligned_cols=159  Identities=9%  Similarity=0.070  Sum_probs=101.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccce-eeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQAT-IGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------   75 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------   75 (170)
                      ....++|+++|.+|+|||||++++++... .....+. .+.+.........+  ..+.+|||||+..+....        
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            34679999999999999999999998763 3333332 33333333344443  579999999977654322        


Q ss_pred             ---hhhhcCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEe-CCCCCCccccCH-------HHHHHHHhh
Q 030880           76 ---PSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGN-KTDLVEKRQVSI-------EEGEAKSRE  143 (170)
Q Consensus        76 ---~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~~~  143 (170)
                         ..+++.+|++++|+|+++.... ..+..++..+.... ...|.++++| |+|+.+.. +..       .++..++..
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~~~~~~~  174 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-AMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKALSKLVAA  174 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-GGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-hhccEEEEEEcccccCCcc-HHHHHHhcchHHHHHHHHH
Confidence               2257899999999999862221 22333333332111 1356666666 99996432 211       234445555


Q ss_pred             cCCe---E--EEEecCCCCChHHHhhcCCC
Q 030880          144 LNVM---F--IETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       144 ~~~~---~--~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .+..   +  +++||+++.|++++|++|.+
T Consensus       175 ~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~  204 (260)
T 2xtp_A          175 CGGRICAFNNRAEGSNQDDQVKELMDCIED  204 (260)
T ss_dssp             TTTCEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hCCeEEEecCcccccccHHHHHHHHHHHHH
Confidence            5542   2  78999999999999998754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.91  E-value=9.7e-25  Score=161.81  Aligned_cols=148  Identities=20%  Similarity=0.216  Sum_probs=98.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc--------hhhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI--------PSYI   79 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~--------~~~~   79 (170)
                      .++|+++|++|+|||||+|+|++.... ....++++.+.....+..++  ..+.+|||||..++....        ..++
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~~  301 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQAA  301 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence            578999999999999999999986432 23334444455444555555  568999999986654332        3357


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      +++|++++|+|++++.+... ..++..+     ...|+++|+||+|+.+.....  ....+.  .+.+++++|+++|.|+
T Consensus       302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l-----~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi  371 (462)
T 3geh_A          302 NTADLVLLTIDAATGWTTGD-QEIYEQV-----KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGI  371 (462)
T ss_dssp             CSCSEEEEEEETTTCSCHHH-HHHHHHH-----TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSH
T ss_pred             hcCCEEEEEeccCCCCCHHH-HHHHHhc-----cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCH
Confidence            89999999999998766544 3444444     237999999999997655433  111111  3568999999999999


Q ss_pred             HHHhhcCCC
Q 030880          160 KVCLMLHPN  168 (170)
Q Consensus       160 ~~~~~~l~~  168 (170)
                      +++|++|.+
T Consensus       372 ~eL~~~i~~  380 (462)
T 3geh_A          372 DSLETAILE  380 (462)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.91  E-value=8.5e-24  Score=155.44  Aligned_cols=157  Identities=19%  Similarity=0.174  Sum_probs=108.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC---CCCcccc--eeeeEEEEEEEEE-------------C--C----eEEEEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK---FDNTYQA--TIGIDFLSKTMYL-------------E--D----RTVRLQ   61 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   61 (170)
                      ....++|+++|+.++|||||+++|++..   ...+..+  +....+.......             +  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4556899999999999999999998542   2222233  2222222222211             1  1    136899


Q ss_pred             EEeCCCcccccccchhhhcCCcEEEEEEeCCCh----hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHH
Q 030880           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR----QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIE  135 (170)
Q Consensus        62 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~  135 (170)
                      +|||||++.|.......+..+|++++|+|+++.    ++.+.+..    +...  ...|+++++||+|+.+...  ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~--~~~~iivviNK~Dl~~~~~~~~~~~  160 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII--GQKNIIIAQNKIELVDKEKALENYR  160 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH--TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc--CCCcEEEEEECccCCCHHHHHHHHH
Confidence            999999999888888888899999999999853    44443332    2222  1357899999999976432  2234


Q ss_pred             HHHHHHhh---cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          136 EGEAKSRE---LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       136 ~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++..+...   .+++++++|+++|.|+++++++|.+
T Consensus       161 ~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~  196 (410)
T 1kk1_A          161 QIKEFIEGTVAENAPIIPISALHGANIDVLVKAIED  196 (410)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            55666654   3579999999999999999998754

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.90  E-value=4e-24  Score=154.06  Aligned_cols=112  Identities=19%  Similarity=0.198  Sum_probs=87.9

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  125 (170)
                      .+.+.+||++|++.++..|..++++++++|+|||+++          .+++.+...|+..+.... ..++|+++++||+|
T Consensus       200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D  279 (362)
T 1zcb_A          200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD  279 (362)
T ss_dssp             TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred             CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence            4789999999999999999999999999999999998          789999999998887653 36899999999999


Q ss_pred             CCCcc----------------ccCHHHHHHHH--------h---hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          126 LVEKR----------------QVSIEEGEAKS--------R---ELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       126 ~~~~~----------------~~~~~~~~~~~--------~---~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +.++.                ..+.+++..++        .   ..++.+++|||+++.||+++|+++.+
T Consensus       280 L~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~  349 (362)
T 1zcb_A          280 LLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  349 (362)
T ss_dssp             HHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             hhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHH
Confidence            86432                25677887776        1   34678999999999999999998764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.90  E-value=2e-24  Score=161.59  Aligned_cols=152  Identities=17%  Similarity=0.208  Sum_probs=98.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC--CC-----------------------------cccceeeeEEEEEEEEECCe
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DN-----------------------------TYQATIGIDFLSKTMYLEDR   56 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~   56 (170)
                      ..+||+++|.+++|||||+++|++...  ..                             +..+..+.+.  ........
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~--~~~~~~~~  109 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSI--CTSHFSTH  109 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCC--CEEEEECS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEe--eeEEEecC
Confidence            468999999999999999999986511  00                             0011111121  22223344


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHh-----HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLN-----TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      ...+.+|||||+++|...+..+++.+|++++|+|++++.+...     ...+...+.... ...|+++++||+|+.+..+
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~  188 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQ  188 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCH
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchH
Confidence            5689999999999999999999999999999999998754322     111112222222 2356999999999976433


Q ss_pred             cCHHHH----HHHHhhc-----CCeEEEEecCCCCChHHH
Q 030880          132 VSIEEG----EAKSREL-----NVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       132 ~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~i~~~  162 (170)
                      ...++.    ..+....     +++++++||++|.|++++
T Consensus       189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            333333    3333333     468999999999999864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.90  E-value=5.4e-24  Score=141.50  Aligned_cols=116  Identities=18%  Similarity=0.291  Sum_probs=90.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC--
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD--   81 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~--   81 (170)
                      ...++|+++|++|+|||||++++.+..+...   ..++.+         .......+.+||+||++.+...+..++++  
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~  116 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA  116 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence            4678999999999999999999998875431   112211         11134578999999999998888888776  


Q ss_pred             --CcEEEEEEeCC-ChhhHHhHHHHHHHHHHh----cCCCCeEEEEEeCCCCCCccc
Q 030880           82 --SSVAVVVYDVA-SRQSFLNTSKWIDEVRTE----RGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        82 --~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~  131 (170)
                        +|++++|||++ +++++.....|+..+...    ...+.|+++|+||+|+.+...
T Consensus       117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence              89999999999 899999998888887654    235799999999999976543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.90  E-value=2.7e-23  Score=150.08  Aligned_cols=157  Identities=18%  Similarity=0.096  Sum_probs=104.6

Q ss_pred             cee-EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc---------ccccchhh
Q 030880            9 KYK-LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER---------FRSLIPSY   78 (170)
Q Consensus         9 ~~~-i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~---------~~~~~~~~   78 (170)
                      .++ |+++|++|+|||||+|+|.+........+..+.+.....+.+++  ..+.+|||+|.-.         +... ...
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~  254 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSE  254 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHH
Confidence            355 99999999999999999998775433334444455555666666  4689999999622         2222 234


Q ss_pred             hcCCcEEEEEEeCCChh--hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhc---CCeEEEEe
Q 030880           79 IRDSSVAVVVYDVASRQ--SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSREL---NVMFIETS  152 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~---~~~~~~~s  152 (170)
                      +..+|.+++|+|++++.  ..+....|...+......+.|+++|+||+|+.+.... ....+..++..+   +..++++|
T Consensus       255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S  334 (364)
T 2qtf_A          255 AKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS  334 (364)
T ss_dssp             GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred             HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            78999999999999876  5555555655555544467899999999998654310 012233344444   34789999


Q ss_pred             cCCCCChHHHhhcCCC
Q 030880          153 AKAGFNIKVCLMLHPN  168 (170)
Q Consensus       153 ~~~~~~i~~~~~~l~~  168 (170)
                      ++++.|+++++++|.+
T Consensus       335 A~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          335 ALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             TTTTBSHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHH
Confidence            9999999999998754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.90  E-value=2.9e-23  Score=153.52  Aligned_cols=156  Identities=18%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC--CCcc----------ccee-------------------eeEEEEEEEEECC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF--DNTY----------QATI-------------------GIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~~----------~~~~-------------------~~~~~~~~~~~~~   55 (170)
                      ...+||+++|..++|||||+++|++...  ....          ..+.                   +.+..........
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4458999999999999999999986531  1000          0110                   0111111112233


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc----
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ----  131 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----  131 (170)
                      ....+.+|||||+++|...+..+++.+|++++|+|++++... ....++..+...  ...|+++++||+|+.+...    
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~  178 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIASLL--GIKHIVVAINKMDLNGFDERVFE  178 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHH
Confidence            446899999999999988888899999999999999876422 233344333322  1236899999999975321    


Q ss_pred             cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHhhc
Q 030880          132 VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus       132 ~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~~  165 (170)
                      ...++...+++..+     ++++++||++|.|++++|+.
T Consensus       179 ~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          179 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             HHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            12355667777777     68999999999999986554

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1e-24  Score=161.48  Aligned_cols=149  Identities=17%  Similarity=0.153  Sum_probs=95.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcc--------cccccchhhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE--------RFRSLIPSYI   79 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~--------~~~~~~~~~~   79 (170)
                      ..+|+++|.+|+|||||+|+|.+..... ...+..+.+....  .....+..+.+|||||++        ++...+..++
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~--~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYS--SAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEE--ECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEE--EEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            3689999999999999999999876532 1122222233222  233334579999999985        4556677788


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCCCCC
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKAGFN  158 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~  158 (170)
                      +++|++++|+|+.++.+...  .++..+..  ..++|+++|+||+|+.+...    ++.++. .++. .++++||++|.|
T Consensus        81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~g  151 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLG  151 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBT
T ss_pred             HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCC
Confidence            99999999999988765443  23333322  25789999999999864321    111222 3455 789999999999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++++++.+
T Consensus       152 v~~L~~~i~~  161 (436)
T 2hjg_A          152 LGDLLDAVAE  161 (436)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999998754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.90  E-value=1.1e-25  Score=168.83  Aligned_cols=155  Identities=17%  Similarity=0.172  Sum_probs=109.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ++.+|+++|++++|||||+++|.+..+.....++.+.+.....+..+ ....+.+|||||++.|..++..+++.+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            45789999999999999999999765544444444434333333222 22378999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHH---Hhhc--CCeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAK---SREL--NVMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~i~~  161 (170)
                      |+|+++....+..    ..+......++|+++++||+|+.+.... ...+....   +..+  .++++++||++|.|+++
T Consensus        82 VVDa~dg~~~qt~----e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           82 VVAADDGVMKQTV----ESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             ECBSSSCCCHHHH----HHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEECCCCccHHHH----HHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            9999986444332    2223333357899999999998643221 11222221   1122  35899999999999999


Q ss_pred             HhhcCC
Q 030880          162 CLMLHP  167 (170)
Q Consensus       162 ~~~~l~  167 (170)
                      +|++|.
T Consensus       158 Lle~I~  163 (537)
T 3izy_P          158 LAEATI  163 (537)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.90  E-value=7.8e-25  Score=158.25  Aligned_cols=155  Identities=17%  Similarity=0.254  Sum_probs=86.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-ccc--------ceeeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   71 (170)
                      ..++|+++|++|+|||||+++|++..... .+.        ++.+...........+....+++|||||+       +.+
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            46899999999999999999987653322 211        23333333333334555678999999998       666


Q ss_pred             cccch-------hhhcCCcEE-----------EEEEeCCC-hhhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           72 RSLIP-------SYIRDSSVA-----------VVVYDVAS-RQSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        72 ~~~~~-------~~~~~~~~~-----------i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      ..++.       .++++++++           +++|++++ ..++..+. .++..+    ..++|+|+|+||+|+....+
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHH
Confidence            66665       555544332           35555554 44554444 333332    36799999999999976655


Q ss_pred             cCH--HHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880          132 VSI--EEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       132 ~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      +..  .++..++...+++++++|++++.| ++.|.++.
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~  228 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQT  228 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHH
Confidence            543  577788888899999999999998 76665543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.90  E-value=2.4e-24  Score=153.33  Aligned_cols=113  Identities=23%  Similarity=0.283  Sum_probs=92.9

Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCC----------ChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVA----------SRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKT  124 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~  124 (170)
                      ..+++.+||++|++.++..|..|+++++++|+|||++          +.+++.+...|+..+..... .++|+++++||+
T Consensus       159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~  238 (340)
T 4fid_A          159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKM  238 (340)
T ss_dssp             SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred             eeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECc
Confidence            4578999999999999999999999999999999998          77899999999888876543 689999999999


Q ss_pred             CCCCcc---------------ccCHHHHHHHHhh---------------------------cCCeEEEEecCCCCChHHH
Q 030880          125 DLVEKR---------------QVSIEEGEAKSRE---------------------------LNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       125 D~~~~~---------------~~~~~~~~~~~~~---------------------------~~~~~~~~s~~~~~~i~~~  162 (170)
                      |+..++               ..+.+++..++..                           .++.++++||+++.+|+.+
T Consensus       239 DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~v  318 (340)
T 4fid_A          239 DLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRV  318 (340)
T ss_dssp             HHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHH
T ss_pred             hhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHH
Confidence            985321               1245666555432                           2367899999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |+.+..
T Consensus       319 F~~v~~  324 (340)
T 4fid_A          319 FMLAVD  324 (340)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.89  E-value=3.9e-24  Score=158.18  Aligned_cols=156  Identities=18%  Similarity=0.270  Sum_probs=105.8

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCcc-----------------------------cceeeeEEEEEEEEEC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNTY-----------------------------QATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~   54 (170)
                      ....+||+++|+.++|||||+++|++.  .+....                             .+..+.+...  ....
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~--~~~~   80 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTF--MRFE   80 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEE
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeE--EEEe
Confidence            346789999999999999999999864  221110                             1112222222  2233


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHh----cCCCC-eEEEEEeCCCCCCc
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE----RGSDV-IIVLVGNKTDLVEK  129 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~-p~ivv~nK~D~~~~  129 (170)
                      .....+.+|||||+++|...+..+++.+|++++|+|+++ .+|+....|..+...+    ...++ |+++++||+|+.+.
T Consensus        81 ~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~  159 (435)
T 1jny_A           81 TKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEP  159 (435)
T ss_dssp             CSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSS
T ss_pred             cCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCc
Confidence            345689999999999999999999999999999999998 6776544332222211    11234 58899999999752


Q ss_pred             c------ccCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHhh
Q 030880          130 R------QVSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus       130 ~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~~  164 (170)
                      .      ....+++..++...+     ++++++|+++|.|+.++++
T Consensus       160 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          160 PYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            1      122455667776665     6899999999999986654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=9e-23  Score=151.17  Aligned_cols=155  Identities=21%  Similarity=0.207  Sum_probs=102.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-----------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-----------   75 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-----------   75 (170)
                      ..++++++|++|+|||||++++++.... ....+..+.+.....+...+.  .+.+|||+|..+.....           
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence            4589999999999999999999987542 222334444444455555664  67899999975432211           


Q ss_pred             -hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH-----HHHhhcCCeEE
Q 030880           76 -PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFI  149 (170)
Q Consensus        76 -~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~  149 (170)
                       ..+++.+|++++++|++++.+.+..  ++......  .++|+++++||+|+.+......++..     .+....+++++
T Consensus       257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence             2457789999999999877655442  22222222  46999999999999765544433332     22223357899


Q ss_pred             EEecCCCCChHHHhhcCCC
Q 030880          150 ETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       150 ~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++||++|.|++++|+.+.+
T Consensus       333 ~~SA~~g~gv~~l~~~i~~  351 (439)
T 1mky_A          333 FTSADKGWNIDRMIDAMNL  351 (439)
T ss_dssp             ECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHH
Confidence            9999999999999988753

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.89  E-value=4.3e-24  Score=159.09  Aligned_cols=156  Identities=17%  Similarity=0.228  Sum_probs=93.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccceeeeEEEEEEEEECC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   55 (170)
                      ...++|+++|+.++|||||+++|++.  .+...                             .....+.+.....+..  
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~--  118 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET--  118 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence            44689999999999999999999752  11100                             0011111111112222  


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcc-
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKR-  130 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~-  130 (170)
                      ....+.+|||||+++|...+..+++.+|++|+|+|+++.   .+|+...++...+......++| +++++||+|+.+.. 
T Consensus       119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  198 (467)
T 1r5b_A          119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQW  198 (467)
T ss_dssp             SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccc
Confidence            246899999999999999999999999999999999986   3444333333333332234677 99999999995321 


Q ss_pred             -----ccCHHHHHHHHhhc-------CCeEEEEecCCCCChHHHhh
Q 030880          131 -----QVSIEEGEAKSREL-------NVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus       131 -----~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~  164 (170)
                           .....+...+++..       +++++++|+++|.|++++|+
T Consensus       199 ~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~~  244 (467)
T 1r5b_A          199 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  244 (467)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             cHHHHHHHHHHHHHHHHHhcCCCccCCceEEecccccccccccccc
Confidence                 11233566666655       46799999999999988763

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.89  E-value=8.7e-25  Score=162.84  Aligned_cols=153  Identities=22%  Similarity=0.200  Sum_probs=105.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+..+|+++|+.++|||||+++|....+.....+..+.+.....+..+  +..+++|||||++.|..++...++.+|+++
T Consensus         2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI   79 (501)
T 1zo1_I            2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVV   79 (501)
T ss_dssp             CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence            356799999999999999999998765443322222222222222222  347899999999999999999999999999


Q ss_pred             EEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc--ccCHH--HHHHHHhhcC--CeEEEEecCCCC
Q 030880           87 VVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR--QVSIE--EGEAKSRELN--VMFIETSAKAGF  157 (170)
Q Consensus        87 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~~--~~~~~~s~~~~~  157 (170)
                      +|+|+++.   ++.+.+    ..+.   ..++|+++++||+|+.+..  .+..+  +...++..++  ++++++||++|.
T Consensus        80 LVVda~~g~~~qT~e~l----~~~~---~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~  152 (501)
T 1zo1_I           80 LVVAADDGVMPQTIEAI----QHAK---AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGT  152 (501)
T ss_dssp             EEEETTTBSCTTTHHHH----HHHH---HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCT
T ss_pred             EEeecccCccHHHHHHH----HHHH---hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeecc
Confidence            99999874   333322    2222   2468999999999996431  11100  0001112233  689999999999


Q ss_pred             ChHHHhhcCCC
Q 030880          158 NIKVCLMLHPN  168 (170)
Q Consensus       158 ~i~~~~~~l~~  168 (170)
                      |++++|++|..
T Consensus       153 gI~eLle~I~~  163 (501)
T 1zo1_I          153 GIDELLDAILL  163 (501)
T ss_dssp             TCTTHHHHTTT
T ss_pred             Ccchhhhhhhh
Confidence            99999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.89  E-value=4.4e-23  Score=157.65  Aligned_cols=154  Identities=16%  Similarity=0.216  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-------------------------------cceeeeEEEEEEEEECC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-------------------------------QATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   55 (170)
                      ...+||+++|.+++|||||+++|++....-..                               .+..+.+.....+  ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~--~~  242 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHF--ST  242 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEE--EC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEE--ec
Confidence            45689999999999999999999875321110                               0112222222222  23


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHHhHHHHHHHHHHhcCCC-CeEEEEEeCCCCCCccc
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~-~p~ivv~nK~D~~~~~~  131 (170)
                      ....+.||||||+++|...+..+++.+|++|+|+|++++.   ++....++...+......+ .|+++|+||+|+.+...
T Consensus       243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~  322 (611)
T 3izq_1          243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ  322 (611)
T ss_dssp             SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred             CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence            4468999999999999999999999999999999998742   1111122222222222233 45999999999976332


Q ss_pred             cC----HHHHHHHHhhc-----CCeEEEEecCCCCChHHH
Q 030880          132 VS----IEEGEAKSREL-----NVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       132 ~~----~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~~  162 (170)
                      ..    ..+...+....     +++++++||++|.|++++
T Consensus       323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            22    23334444444     358999999999999876

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.88  E-value=1.9e-22  Score=153.42  Aligned_cols=154  Identities=22%  Similarity=0.213  Sum_probs=103.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc----cceeeeEEEEEEE------------EECCeEEEEEEEeCCCccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTM------------YLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~------------~~~~~~~~~~i~D~~g~~~   70 (170)
                      .+..+|+++|++++|||||+++|++.......    .++.+........            ........+++|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            35679999999999999999999875443211    1121211111100            0001112599999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC-------------H
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-------------I  134 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-------------~  134 (170)
                      |..++..+++.+|++|+|+|+++   +++++.+..    +..   .++|+++++||+|+.+.....             .
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~  155 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDI  155 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccCCchHHHHHHhHH
Confidence            99999999999999999999998   666654432    221   468999999999986432110             0


Q ss_pred             ----------HHHHHHHhhc---------------CCeEEEEecCCCCChHHHhhcCC
Q 030880          135 ----------EEGEAKSREL---------------NVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       135 ----------~~~~~~~~~~---------------~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                                .+......+.               .++++.+||++|.|+++++++|.
T Consensus       156 ~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~  213 (594)
T 1g7s_A          156 QVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM  213 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHH
Confidence                      0111111111               23899999999999999998875

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.88  E-value=8.7e-23  Score=147.84  Aligned_cols=142  Identities=10%  Similarity=0.028  Sum_probs=102.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      +|+++|.+++|||||+++|+      .  ...+.+.....  .......+.+|||||+++|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~--~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------K--KGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------E--EEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------h--CCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999998      1  11111222222  23334579999999999998888888999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEe-CCCCCCccccC--HHHHHHHHhhcC---CeEEE--EecCC---CCC
Q 030880           91 VASRQSFLNTSKWIDEVRTERGSDVII-VLVGN-KTDLVEKRQVS--IEEGEAKSRELN---VMFIE--TSAKA---GFN  158 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~--~~~~~~~~~~~~---~~~~~--~s~~~---~~~  158 (170)
                       + ...+.....++..+..   .++|. ++++| |+|+ ++....  .+++.++....+   +++++  +||++   +.|
T Consensus        93 -~-~g~~~qt~e~~~~~~~---~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~g  166 (370)
T 2elf_A           93 -P-QGLDAHTGECIIALDL---LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEG  166 (370)
T ss_dssp             -T-TCCCHHHHHHHHHHHH---TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTT
T ss_pred             -C-CCCcHHHHHHHHHHHH---cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCC
Confidence             4 3334445555555443   24676 88888 9999 543322  255666666553   68999  99999   999


Q ss_pred             hHHHhhcCCC
Q 030880          159 IKVCLMLHPN  168 (170)
Q Consensus       159 i~~~~~~l~~  168 (170)
                      ++++++.|.+
T Consensus       167 i~~L~~~l~~  176 (370)
T 2elf_A          167 VDELKARINE  176 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999987753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.88  E-value=1.2e-23  Score=156.45  Aligned_cols=154  Identities=18%  Similarity=0.161  Sum_probs=97.5

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCC--------cccccccch
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG--------QERFRSLIP   76 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g--------~~~~~~~~~   76 (170)
                      ..+...+|+++|.+|+|||||+|+|.+...... ..+.+.+...........+..+.+|||||        ++++.....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            345667999999999999999999998765311 22222333333333444456899999999        666777788


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      .+++++|++++|+|..+.-+  ....++..+...  .++|+++|+||+|+.+..    ....++. .++. .++.+||++
T Consensus        98 ~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~  168 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVT--AADEEVAKILYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTH  168 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTT
T ss_pred             hhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeeccc
Confidence            88999999999999876432  233343333322  579999999999985332    1111111 2333 567999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      |.|++++++.+.+
T Consensus       169 g~gv~~L~~~i~~  181 (456)
T 4dcu_A          169 GLGLGDLLDAVAE  181 (456)
T ss_dssp             CTTHHHHHHHHHT
T ss_pred             ccchHHHHHHHHh
Confidence            9999999998754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.88  E-value=2.4e-23  Score=152.87  Aligned_cols=149  Identities=19%  Similarity=0.175  Sum_probs=102.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--------CCCCc-------ccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--------KFDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      ....++|+++|++++|||||+++|++.        .+...       .....+.+..............+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            446689999999999999999999873        11110       000111222222233334456899999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC-
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN-  145 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~-  145 (170)
                      |...+..+++.+|++++|+|+++.... ....++..+..   .++| +++++||+|+.+...   ...+++..+++..+ 
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~---~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH---cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            988888999999999999999876432 33445544443   3578 889999999964221   11235666666665 


Q ss_pred             ----CeEEEEecCCCCC
Q 030880          146 ----VMFIETSAKAGFN  158 (170)
Q Consensus       146 ----~~~~~~s~~~~~~  158 (170)
                          ++++++||++|.|
T Consensus       164 ~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          164 PGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CTTTSCEEECCHHHHHH
T ss_pred             cccCCCEEEccHHHhhh
Confidence                6899999999987

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.88  E-value=4.7e-23  Score=150.87  Aligned_cols=157  Identities=15%  Similarity=0.093  Sum_probs=106.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC-------CCCc-------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDK-------FDNT-------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      +.+||+++|+.++|||||+++|++..       +...       .....+.+..............+.+|||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999998731       1100       000111222222233334456899999999999988


Q ss_pred             cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC----
Q 030880           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN----  145 (170)
Q Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~----  145 (170)
                      .+..+++.+|++++|+|+++....+. ..++..+..   .++| +++++||+|+.+...   ...+++.++++..+    
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~  157 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGE  157 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence            88888999999999999998543222 233333322   3578 689999999864221   12345666776665    


Q ss_pred             -CeEEEEecCCCCC----------hHHHhhcCCC
Q 030880          146 -VMFIETSAKAGFN----------IKVCLMLHPN  168 (170)
Q Consensus       146 -~~~~~~s~~~~~~----------i~~~~~~l~~  168 (170)
                       ++++++||++|.|          +.++++.|.+
T Consensus       158 ~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~  191 (397)
T 1d2e_A          158 ETPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (397)
T ss_dssp             TSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             cCcEEEeehhhcccccCCCccCCcHHHHHHHHHH
Confidence             5899999999764          8888887643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.88  E-value=6.1e-24  Score=157.92  Aligned_cols=153  Identities=18%  Similarity=0.219  Sum_probs=102.9

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC--CCCCc-----------------------------ccceeeeEEEEEEEEEC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYD--KFDNT-----------------------------YQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   54 (170)
                      ....++|+++|.+++|||||+++|++.  .+...                             ..+..+.+.....  ..
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~   81 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FE   81 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EE
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Ee
Confidence            345699999999999999999999864  11110                             0011122221122  23


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  127 (170)
                      .....+.+|||||+++|...+..+++.+|++++|+|+++..   +|+   ....++..+..   .++| +++++||+|+.
T Consensus        82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGG
T ss_pred             cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccccc
Confidence            34468999999999999998999999999999999998752   332   22222222222   3465 89999999996


Q ss_pred             Cccc----cCHHHHHHHHhhcC-----CeEEEEecCCCCChHHHh
Q 030880          128 EKRQ----VSIEEGEAKSRELN-----VMFIETSAKAGFNIKVCL  163 (170)
Q Consensus       128 ~~~~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  163 (170)
                      +...    ...+++..+++..+     ++++++||++|.|+.++.
T Consensus       159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~~  203 (458)
T 1f60_A          159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEAT  203 (458)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBCC
T ss_pred             cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccccc
Confidence            3211    12344556666555     689999999999998654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.87  E-value=1.2e-22  Score=152.85  Aligned_cols=115  Identities=17%  Similarity=0.143  Sum_probs=81.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC------------------CCCc----ccceeeeEEEEEEEEECCeEEEEEEEeC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDK------------------FDNT----YQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~------------------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (170)
                      ...+|+++|.+++|||||+++|+...                  ..+.    ..+..+.......+..  ..+.+.+|||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liDT   89 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLDT   89 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEECC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEEC
Confidence            45799999999999999999997211                  0000    0011111222222222  3478999999


Q ss_pred             CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ||+..|...+..+++.+|++|+|+|+++..+......| ..+.   ..++|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred             CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence            99999999999999999999999999987665555444 2222   24689999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.86  E-value=1.1e-22  Score=143.75  Aligned_cols=159  Identities=18%  Similarity=0.173  Sum_probs=100.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------ccee----------------------eeEE-----------
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATI----------------------GIDF-----------   46 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~----------------------~~~~-----------   46 (170)
                      .....+|+++|.+|+|||||+|+|++..+.+..      .|+.                      +.+.           
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345679999999999999999999988763221      1220                      0000           


Q ss_pred             ----------EEEEEEE-CCeEEEEEEEeCCCcc-------------cccccchhhhcCCcEEE-EEEeCCChhhHHhHH
Q 030880           47 ----------LSKTMYL-EDRTVRLQLWDTAGQE-------------RFRSLIPSYIRDSSVAV-VVYDVASRQSFLNTS  101 (170)
Q Consensus        47 ----------~~~~~~~-~~~~~~~~i~D~~g~~-------------~~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~  101 (170)
                                ....+.+ ......+.+|||||..             .+......++++++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                      0000000 0012579999999964             23446667888888777 699998764433333


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh--cC-CeEEEEecCCCCChHHHhhcCC
Q 030880          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE--LN-VMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       102 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~-~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .++..+   ...+.|+++|+||+|+.+......+.+......  .+ .+++++||++|.|++++|++|.
T Consensus       183 ~~~~~~---~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~  248 (299)
T 2aka_B          183 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  248 (299)
T ss_dssp             HHHHHH---CTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHH
T ss_pred             HHHHHh---CCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHH
Confidence            344333   235689999999999976544333322211111  13 3688999999999999998764

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.86  E-value=4.1e-22  Score=158.69  Aligned_cols=159  Identities=15%  Similarity=0.100  Sum_probs=108.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC-------CC-----C--cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK-------FD-----N--TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~-------~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      ....++|+++|++++|||||+++|++..       +.     +  ......+.+..............+.+|||||+++|
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            3456899999999999999999998631       00     0  00111222222222233444568999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc---cCHHHHHHHHhhcC--
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ---VSIEEGEAKSRELN--  145 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--  145 (170)
                      ...+..+++.+|++|+|+|+++... .....++..+...   ++| +++++||+|+.+...   ...+++..+.+..+  
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            8888889999999999999987632 2334444444332   578 789999999975221   12345666776665  


Q ss_pred             ---CeEEEEecCCC--------CChHHHhhcCCC
Q 030880          146 ---VMFIETSAKAG--------FNIKVCLMLHPN  168 (170)
Q Consensus       146 ---~~~~~~s~~~~--------~~i~~~~~~l~~  168 (170)
                         ++++++|+++|        .|++++++.|.+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~  482 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDS  482 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhh
Confidence               58999999999        578899887654

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.86  E-value=2.7e-23  Score=158.43  Aligned_cols=150  Identities=21%  Similarity=0.242  Sum_probs=83.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC-------------------------------CCcccceeeeEEEEEEEEEC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF-------------------------------DNTYQATIGIDFLSKTMYLE   54 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~   54 (170)
                      ....++|+++|.+++|||||+++|++...                               ..+..+..+.+....  .+.
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~--~~~  251 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST--TFE  251 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE--EEE
Confidence            34568999999999999999999974210                               000011222222222  222


Q ss_pred             CeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hH--H-hHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880           55 DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SF--L-NTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        55 ~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~-~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  127 (170)
                      .....+.||||||+++|...+..+++.+|++|+|+|++++.   ++  . .....+..+..   .++| +|+|+||+|+.
T Consensus       252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip~iIvviNKiDl~  328 (592)
T 3mca_A          252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCCCEEEEEECGGGG
T ss_pred             eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCCeEEEEEeccccc
Confidence            34468999999999999999999999999999999998642   22  1 12222222222   3465 89999999986


Q ss_pred             Ccccc----CHHHHHHHH-hhcCC-----eEEEEecCCCCChH
Q 030880          128 EKRQV----SIEEGEAKS-RELNV-----MFIETSAKAGFNIK  160 (170)
Q Consensus       128 ~~~~~----~~~~~~~~~-~~~~~-----~~~~~s~~~~~~i~  160 (170)
                      +....    ...+...+. ...++     +++++||++|.|+.
T Consensus       329 ~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          329 SWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             cccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            52211    123444454 44454     79999999999998

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.86  E-value=9.6e-21  Score=131.59  Aligned_cols=122  Identities=12%  Similarity=0.155  Sum_probs=86.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc-----
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-----   80 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~-----   80 (170)
                      .+.++|+++|.+|+|||||++++++..... ...+..+...........+  ..+.+|||||+..+......+++     
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            467999999999999999999999876522 1122222233333333444  58999999999888766655554     


Q ss_pred             ----CCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCccc
Q 030880           81 ----DSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        81 ----~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~  131 (170)
                          ++|++++|++++... +.. ...|+..+......+  .|+++|+||+|+.+...
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~  168 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDE  168 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTT
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCC
Confidence                789999999987655 333 346777776655433  48999999999864433

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.85  E-value=3.3e-21  Score=129.60  Aligned_cols=154  Identities=16%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----------ccccc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----------FRSLI   75 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----------~~~~~   75 (170)
                      .....+|+++|++|+|||||++++.+..+.....++.+...........+   .+.+||+||...          +....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            44568999999999999999999998764333333333232222222222   578999999742          12222


Q ss_pred             hhhh---cCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc--cCHHHHHHHHhhcC--C
Q 030880           76 PSYI---RDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ--VSIEEGEAKSRELN--V  146 (170)
Q Consensus        76 ~~~~---~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~--~  146 (170)
                      ..++   ..++++++++|++++.+...  +..|+.    .  .+.|+++++||+|+.+..+  .....+..++.+.+  +
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~----~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~  173 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV----D--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDV  173 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH----H--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH----H--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCC
Confidence            2333   47899999999988655432  222321    1  4688999999999865422  22355666666654  5


Q ss_pred             eEEEEecCCCCChHHHhhcCCC
Q 030880          147 MFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .++++|++++.|+++++++|.+
T Consensus       174 ~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          174 QVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHH
T ss_pred             ceEEEeecCCCCHHHHHHHHHH
Confidence            7899999999999999988753

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.85  E-value=5e-21  Score=147.85  Aligned_cols=123  Identities=17%  Similarity=0.151  Sum_probs=81.2

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-------------ccc---eeeeEEEEEEEEECCeEEEEEEEe
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-------------YQA---TIGIDFLSKTMYLEDRTVRLQLWD   64 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-------------~~~---~~~~~~~~~~~~~~~~~~~~~i~D   64 (170)
                      |.........+|+++|+.|+|||||+++|++......             ..+   ..+.+............+.+++||
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            4445556678999999999999999999984322100             000   001111122222223357899999


Q ss_pred             CCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      |||+..+...+..+++.+|++++|+|+++.-... ...++..+..   .++|+++++||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~---~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER---LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH---TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH---ccCCEEEEecCCchh
Confidence            9999999988999999999999999987653322 2234444433   368999999999986

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.85  E-value=6.3e-22  Score=139.97  Aligned_cols=135  Identities=18%  Similarity=0.149  Sum_probs=109.6

Q ss_pred             HHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh-hHHhHH
Q 030880           24 SIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTS  101 (170)
Q Consensus        24 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~  101 (170)
                      +|+.++..+.+. ..+.|+.+ +........++   ++.+||+  ++++..++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiG-d~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVG-DRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTT-CEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCc-cEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577788888887 77788888 44343332222   7899999  8999999999999999999999999997 788899


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCCCChHHHhhcCCCC
Q 030880          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       102 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      .|+..+..   .++|+++|+||+|+.+...+  +++.++++.++  +.++++||++|.|++++|..+...
T Consensus       106 ~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          106 KFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence            99987754   46999999999999755433  45677777777  899999999999999999987654

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.84  E-value=3.1e-21  Score=139.70  Aligned_cols=154  Identities=19%  Similarity=0.218  Sum_probs=104.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeE---EE-----------E---------------------------
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID---FL-----------S---------------------------   48 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~---~~-----------~---------------------------   48 (170)
                      .+|+++|++|+|||||++++.+..+.+......+..   ..           .                           
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            489999999999999999999976633322111100   00           0                           


Q ss_pred             -----------EEEE-ECCeEEEEEEEeCCCcccc-------------cccchhhhcCCcEEEEEEeCCChhhHHhHHHH
Q 030880           49 -----------KTMY-LEDRTVRLQLWDTAGQERF-------------RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW  103 (170)
Q Consensus        49 -----------~~~~-~~~~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~  103 (170)
                                 .... .......+.+|||||...+             ......+++++|++++++|.++.....  ..|
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~  192 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDA  192 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHH
Confidence                       0000 0111236899999998765             456678899999999999876543221  334


Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880          104 IDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus       104 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +..+......+.|+++|+||+|+.+......+.+..+...++..|+.++++++.++++.+..
T Consensus       193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          193 IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            44444444467899999999999876655555566666677889999999999988876543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.83  E-value=3.9e-20  Score=129.07  Aligned_cols=122  Identities=11%  Similarity=0.105  Sum_probs=82.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchh-------h
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS-------Y   78 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~-------~   78 (170)
                      ...++|+++|.+|+|||||+|+|++...... ..+..+........  ...+..+.+|||||+..+......       +
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~--~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSR--SRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEE--EETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEE--eeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            3579999999999999999999998765321 11222222222222  233468999999998776543322       1


Q ss_pred             --hcCCcEEEEEEeCCChhhHHh-HHHHHHHHHHhcCCC--CeEEEEEeCCCCCCccc
Q 030880           79 --IRDSSVAVVVYDVASRQSFLN-TSKWIDEVRTERGSD--VIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        79 --~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~  131 (170)
                        .+.+|++++|+|++.. ++.. ...|+..+....+.+  .|+++|+||+|+.++..
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence              2479999999998754 3333 346677776654433  69999999999976543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.83  E-value=4.9e-22  Score=140.44  Aligned_cols=156  Identities=15%  Similarity=0.215  Sum_probs=82.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC-CCCCccc--------ceeeeEEEEEEEEECCeEEEEEEEeCCCc-------ccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD-KFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERF   71 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~-------~~~   71 (170)
                      ..++|+++|++|+|||||+++|.+. .++..+.        ++.............+....+++||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4589999999999999999998875 4333221        11111111122222344568999999997       444


Q ss_pred             cccch-------hhhcC-------------CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           72 RSLIP-------SYIRD-------------SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        72 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      .....       .++++             +++++++.+++. .+++....  ..+... ...+|+++|+||.|+....+
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l-~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAI-HNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHH-TTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHH-HhcCCEEEEEEeCCCCCHHH
Confidence            44443       34332             334455544432 23333321  222222 24689999999999975543


Q ss_pred             c--CHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          132 V--SIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       132 ~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +  ..+++.++++..++.++++|++++ |++++|.++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~  210 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTR  210 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHH
Confidence            3  346788889999999999999999 99999987654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.83  E-value=1.8e-20  Score=137.07  Aligned_cols=154  Identities=16%  Similarity=0.094  Sum_probs=104.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc----ccccchh---hhcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER----FRSLIPS---YIRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~----~~~~~~~---~~~~~~   83 (170)
                      .|.++|++|+|||||++.+.+....-...+..+.......+...+ ...+.+||+||..+    +..+...   .++.++
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~  237 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR  237 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence            588999999999999999987643111111111122122222232 24689999999643    2222222   245799


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .++.++|++ ..++..+..+..++..+..  ...|.++++||+|+...  ....+.....+..+..++.+||++++|+++
T Consensus       238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            999999998 6667777777766655431  35888999999998654  233445555666788999999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      ++++|.+
T Consensus       315 L~~~i~~  321 (416)
T 1udx_A          315 LKEALHA  321 (416)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.83  E-value=2e-20  Score=136.51  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEE--E-------------------EECC-eEEEEEEEeCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKT--M-------------------YLED-RTVRLQLWDTAG   67 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~--~-------------------~~~~-~~~~~~i~D~~g   67 (170)
                      ++|+++|.+++|||||+|+|++........|.++.+.....  .                   ...+ ....+.+|||||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG   80 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence            58999999999999999999987632222222222211111  1                   1122 246899999999


Q ss_pred             ccc----ccccc---hhhhcCCcEEEEEEeCCCh
Q 030880           68 QER----FRSLI---PSYIRDSSVAVVVYDVASR   94 (170)
Q Consensus        68 ~~~----~~~~~---~~~~~~~~~~i~v~d~~~~   94 (170)
                      ...    ...+.   ..+++++|++++|+|+++.
T Consensus        81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTCC
T ss_pred             cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            753    22222   2457899999999999875

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.83  E-value=2e-20  Score=137.02  Aligned_cols=158  Identities=13%  Similarity=0.183  Sum_probs=83.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcc--------cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTY--------QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------   73 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------   73 (170)
                      ..++|+++|++|+|||||++.|.+.......        .++.............+....+++||++|...+..      
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            3578999999999999999999987653211        11111111111112223345799999999765311      


Q ss_pred             -------------------cchhhhcCCcEEEEEEeCCCh-hhHHhHH-HHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           74 -------------------LIPSYIRDSSVAVVVYDVASR-QSFLNTS-KWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        74 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                                         ....++.++++.+++|+.... .+++... .|+..+.    .++|+|+|+||+|+....++
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHH
Confidence                               123344556655555555432 3444443 4555553    36999999999999766555


Q ss_pred             CH--HHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          133 SI--EEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       133 ~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ..  .++..++...++.++++|++++.++.++|..+.+.
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            44  67788888889999999999999999988877654

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.82  E-value=1.1e-19  Score=140.88  Aligned_cols=158  Identities=11%  Similarity=0.164  Sum_probs=102.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeee-EEE--------EE----------------------------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGI-DFL--------SK----------------------------   49 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~-~~~--------~~----------------------------   49 (170)
                      ..++|+++|.+|+|||||+|+|++....+. ..|++.. ...        ..                            
T Consensus        68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~  147 (695)
T 2j69_A           68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK  147 (695)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence            468999999999999999999998765332 2222210 000        00                            


Q ss_pred             ----------------EEEECCeE--EEEEEEeCCCccc---ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHH
Q 030880           50 ----------------TMYLEDRT--VRLQLWDTAGQER---FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR  108 (170)
Q Consensus        50 ----------------~~~~~~~~--~~~~i~D~~g~~~---~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~  108 (170)
                                      .+..+...  ..+.+|||||...   .......+++++|++++|+|++++.+..+...|...+.
T Consensus       148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~  227 (695)
T 2j69_A          148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK  227 (695)
T ss_dssp             HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred             HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence                            00011100  2589999999654   33456678899999999999998877766655544432


Q ss_pred             HhcCCCCeEEEEEeCCCCCCccccCHH----------HHH-----HHHhh--------cCCeEEEEecC-----------
Q 030880          109 TERGSDVIIVLVGNKTDLVEKRQVSIE----------EGE-----AKSRE--------LNVMFIETSAK-----------  154 (170)
Q Consensus       109 ~~~~~~~p~ivv~nK~D~~~~~~~~~~----------~~~-----~~~~~--------~~~~~~~~s~~-----------  154 (170)
                      .   .+.|+++|+||+|+.....++.+          ...     .+...        .+..++.+|++           
T Consensus       228 ~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~  304 (695)
T 2j69_A          228 G---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ  304 (695)
T ss_dssp             T---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred             h---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence            2   35789999999998654311111          111     11111        12478999999           


Q ss_pred             ---CCCChHHHhhcCCC
Q 030880          155 ---AGFNIKVCLMLHPN  168 (170)
Q Consensus       155 ---~~~~i~~~~~~l~~  168 (170)
                         ++.|++++++.|.+
T Consensus       305 ~~~~~~Gi~~L~~~L~~  321 (695)
T 2j69_A          305 ADLDGTGFPKFMDSLNT  321 (695)
T ss_dssp             CCCTTSSHHHHHHHHHH
T ss_pred             hhhhccCHHHHHHHHHH
Confidence               99999999987643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.81  E-value=8.2e-20  Score=137.63  Aligned_cols=154  Identities=19%  Similarity=0.146  Sum_probs=100.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCC-c-----------c--------cceeeeEEEEEEEEECCeEEEEEEEeCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDN-T-----------Y--------QATIGIDFLSKTMYLEDRTVRLQLWDTA   66 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~-----------~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~   66 (170)
                      ....+|+++|++|+|||||+++|+.....- .           .        .+..+.+.......+....+.+.+||||
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP   90 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP   90 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence            356899999999999999999998632100 0           0        0011111111112222334789999999


Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV  146 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  146 (170)
                      |+..|......+++.+|++|+|+|+++..... ...++..+   ...++|+++++||+|+.....  .+...++...++.
T Consensus        91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~~~~--~~~~~~i~~~l~~  164 (529)
T 2h5e_A           91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDIRDP--MELLDEVENELKI  164 (529)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCCSCH--HHHHHHHHHHHCC
T ss_pred             CChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCccccH--HHHHHHHHHHhCC
Confidence            99999988889999999999999998763221 12222222   235799999999999965432  2334455555554


Q ss_pred             e-----EEEEecCCCCChHHHhhcC
Q 030880          147 M-----FIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus       147 ~-----~~~~s~~~~~~i~~~~~~l  166 (170)
                      .     +...|++++.|+.++++..
T Consensus       165 ~~~~~~~pi~sa~~~~Gv~dl~~~~  189 (529)
T 2h5e_A          165 GCAPITWPIGCGKLFKGVYHLYKDE  189 (529)
T ss_dssp             EEEESEEEESCGGGCCEEEETTTTE
T ss_pred             CccceecceecccCcceeeehhhhh
Confidence            3     4457899999998887643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.81  E-value=4.7e-20  Score=134.01  Aligned_cols=112  Identities=17%  Similarity=0.162  Sum_probs=92.7

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCC----------hhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVAS----------RQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTD  125 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D  125 (170)
                      .+.+.+|||+|++.++..|..|+++++++|+|||+++          .++|++...|+..+.... ..++|++|++||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            3789999999999999999999999999999999999          899999999999987754 36899999999999


Q ss_pred             CCCccc---c---------------------------CHHHHHHHH-----hh--------cCCeEEEEecCCCCChHHH
Q 030880          126 LVEKRQ---V---------------------------SIEEGEAKS-----RE--------LNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       126 ~~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~i~~~  162 (170)
                      +..++.   +                           ..+++..++     ..        .++.+++|||+++.||+++
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            854321   1                           135566653     21        2467889999999999999


Q ss_pred             hhcCCC
Q 030880          163 LMLHPN  168 (170)
Q Consensus       163 ~~~l~~  168 (170)
                      |+++.+
T Consensus       376 F~~v~~  381 (402)
T 1azs_C          376 FNDCRD  381 (402)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.81  E-value=1e-19  Score=141.06  Aligned_cols=116  Identities=20%  Similarity=0.263  Sum_probs=81.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCC------Cc----------ccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD------NT----------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ....+|+++|++|+|||||+++|+..  ...      ..          .....+.......+..  ..+.+.+|||||+
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~i~liDTPG~   87 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDTPGH   87 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEEEEEECCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeEEEEEECcCc
Confidence            45689999999999999999999842  110      00          0011111111122222  2478999999999


Q ss_pred             ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           69 ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        69 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ..|...+..+++.+|++|+|+|+++..+......|.. +..   .++|+++++||+|+..
T Consensus        88 ~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           88 VDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             cchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            9999999999999999999999998877666555543 322   3699999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=1.5e-19  Score=128.59  Aligned_cols=106  Identities=22%  Similarity=0.247  Sum_probs=64.7

Q ss_pred             EEEEEEeCCCccc-------------ccccchhhhcCCcEEEEEEeCCChhhH-HhHHHHHHHHHHhcCCCCeEEEEEeC
Q 030880           58 VRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVYDVASRQSF-LNTSKWIDEVRTERGSDVIIVLVGNK  123 (170)
Q Consensus        58 ~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~p~ivv~nK  123 (170)
                      ..+.+|||||...             +......+++++|++++|+|.++.... .....++..+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4699999999753             344566778999999999997433211 1111222222   2357899999999


Q ss_pred             CCCCCccccCHHHHHHHHhhcCCeEEEEecCC------CCChHHHhhcC
Q 030880          124 TDLVEKRQVSIEEGEAKSRELNVMFIETSAKA------GFNIKVCLMLH  166 (170)
Q Consensus       124 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------~~~i~~~~~~l  166 (170)
                      +|+.+......+.+.......+..++.+++.+      +.|+.++++.+
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~  256 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSE  256 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHH
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHH
Confidence            99976544222323211112235666666554      67788777664

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.80  E-value=3.5e-18  Score=132.73  Aligned_cols=119  Identities=18%  Similarity=0.222  Sum_probs=82.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCC--CCCc-----------c-----cceeeeEEEEEEEEE-----CCeEEEEEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDK--FDNT-----------Y-----QATIGIDFLSKTMYL-----EDRTVRLQL   62 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~--~~~~-----------~-----~~~~~~~~~~~~~~~-----~~~~~~~~i   62 (170)
                      .....+|+++|..++|||||+++|+...  ....           +     ....+.......+..     .+..+.+++
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            3556899999999999999999997531  1100           0     011111111112222     223478999


Q ss_pred             EeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           63 WDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        63 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      |||||+..|...+..+++.+|++|+|+|+++.........| ..+.   ..++|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence            99999999998999999999999999999987554444333 2222   24689999999999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.75  E-value=7.7e-18  Score=130.67  Aligned_cols=151  Identities=19%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc--CCCCCc-----------c-----cceeeeEEEEEEEEECCeEEEEEEEeCCC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMY--DKFDNT-----------Y-----QATIGIDFLSKTMYLEDRTVRLQLWDTAG   67 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~--~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g   67 (170)
                      .....+|+++|.+|+|||||+++|+.  +.....           +     .+..+.......+...  ...+.+|||||
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG   84 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG   84 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence            45568999999999999999999985  221100           0     0111111111122222  46899999999


Q ss_pred             cccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCC-
Q 030880           68 QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNV-  146 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-  146 (170)
                      +..+...+..+++.+|++++|+|+++..+......|. .+..   .++|+++++||+|+....  .......+...++. 
T Consensus        85 ~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~---~~~p~ilviNK~Dl~~~~--~~~~~~~l~~~l~~~  158 (693)
T 2xex_A           85 HVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATT---YGVPRIVFVNKMDKLGAN--FEYSVSTLHDRLQAN  158 (693)
T ss_dssp             CSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHH---TTCCEEEEEECTTSTTCC--HHHHHHHHHHHHCCC
T ss_pred             CcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHH---cCCCEEEEEECCCccccc--hHHHHHHHHHHhCCC
Confidence            9999988999999999999999999876666555543 3333   368999999999986542  11222333333332 


Q ss_pred             ---eEEEEecCCCCChHHHhhcC
Q 030880          147 ---MFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus       147 ---~~~~~s~~~~~~i~~~~~~l  166 (170)
                         ..+.+|+  +.|++.+++++
T Consensus       159 ~~~~~ipisa--~~~~~~l~d~l  179 (693)
T 2xex_A          159 AAPIQLPIGA--EDEFEAIIDLV  179 (693)
T ss_dssp             EEESEEEECC--GGGCCEEEETT
T ss_pred             ceeEEeeccc--CCCcceeeeee
Confidence               3566666  55665555554

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.74  E-value=4.5e-19  Score=128.03  Aligned_cols=158  Identities=16%  Similarity=0.184  Sum_probs=92.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc------cceee----------------------eE-------------
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY------QATIG----------------------ID-------------   45 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~------~~~~~----------------------~~-------------   45 (170)
                      ....+|+++|.+++|||||+|+|++..+.+..      .|+..                      .+             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            34579999999999999999999988763221      12200                      00             


Q ss_pred             --------EEEEEEEE-CCeEEEEEEEeCCCccc-------------ccccchhhhcCCcEEEE-EEeCCChhhHHhHHH
Q 030880           46 --------FLSKTMYL-EDRTVRLQLWDTAGQER-------------FRSLIPSYIRDSSVAVV-VYDVASRQSFLNTSK  102 (170)
Q Consensus        46 --------~~~~~~~~-~~~~~~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~-v~d~~~~~s~~~~~~  102 (170)
                              .....+.+ ......+.+|||||...             +..+...|+++++.+++ +.+++..  +... .
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~--~~~~-~  185 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSD--LANS-D  185 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSC--GGGC-H
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCc--cchh-H
Confidence                    00000000 01135799999999532             33456667766665555 5555432  2211 1


Q ss_pred             HHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH--HhhcC-CeEEEEecCCCCChHHHhhcCC
Q 030880          103 WIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK--SRELN-VMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       103 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ++..+......+.|+++|+||+|+.+............  ....+ ..++.+|++++.|++++++.+.
T Consensus       186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~  253 (353)
T 2x2e_A          186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  253 (353)
T ss_dssp             HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHH
Confidence            22223333345789999999999975543222221111  11123 2678899999999999988764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.74  E-value=3.1e-18  Score=115.98  Aligned_cols=150  Identities=17%  Similarity=0.150  Sum_probs=92.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEE--------------EEEEEEE----------------CCeE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDF--------------LSKTMYL----------------EDRT   57 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~--------------~~~~~~~----------------~~~~   57 (170)
                      ...+++++|.+|+|||||+++|...............+.              .......                ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            346899999999999999999987532111111110000              0000100                1123


Q ss_pred             EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (170)
                      ..+.+|||+|+....   ..+....+.+++|+|+++....  ...+...      .+.|.++++||+|+.+......++.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPEI------FRVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHHH------HHTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhhh------hhcCCEEEEecccCCcchhhHHHHH
Confidence            578899999851110   0111357889999998765321  1111111      1377899999999865433456666


Q ss_pred             HHHHhhc--CCeEEEEecCCCCChHHHhhcCCC
Q 030880          138 EAKSREL--NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       138 ~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ...++..  +++++++|+++|.|++++|++|.+
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~  210 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRG  210 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHH
Confidence            6666654  478999999999999999998754

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=3e-17  Score=117.93  Aligned_cols=147  Identities=12%  Similarity=0.083  Sum_probs=91.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc-
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR-   72 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~-   72 (170)
                      .++|+++|.+|+|||||+|+|++........|..+.+.....+.+++.               ...+.+||+||..+.. 
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~   81 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence            378999999999999999999987643222232222222222333332               1479999999987653 


Q ss_pred             ---cc---chhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHH-----------------------------
Q 030880           73 ---SL---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV-----------------------------  107 (170)
Q Consensus        73 ---~~---~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~-----------------------------  107 (170)
                         .+   ...+++++|++++|+|+++.          ++++....+..++                             
T Consensus        82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~  161 (363)
T 1jal_A           82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFE  161 (363)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHH
Confidence               22   23357899999999999862          2222222111111                             


Q ss_pred             -----------H-------------------Hh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC
Q 030880          108 -----------R-------------------TE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus       108 -----------~-------------------~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                                 .                   .+ ....+|+++++|+.|..-........++.++...+..++.+|++.
T Consensus       162 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          162 LSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             HHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence                       0                   01 013589999999998642112235667888888899999999764

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.72  E-value=6e-18  Score=128.14  Aligned_cols=122  Identities=20%  Similarity=0.217  Sum_probs=81.3

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCC---CcccceeeeEEEEEE--------------------------------
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFD---NTYQATIGIDFLSKT--------------------------------   50 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------------------   50 (170)
                      .....+|+++|.+|+|||||+|+|++....   ....+++........                                
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            345689999999999999999999998753   222222211000000                                


Q ss_pred             ----EEECCe-EEEEEEEeCCCccc-----------ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCC
Q 030880           51 ----MYLEDR-TVRLQLWDTAGQER-----------FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD  114 (170)
Q Consensus        51 ----~~~~~~-~~~~~i~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  114 (170)
                          ...++. ...+.+|||||...           +...+..+++.+|++++|+|+++....+....++..+..   .+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cC
Confidence                000000 02589999999764           334556678899999999999875545555566555532   35


Q ss_pred             CeEEEEEeCCCCCCcc
Q 030880          115 VIIVLVGNKTDLVEKR  130 (170)
Q Consensus       115 ~p~ivv~nK~D~~~~~  130 (170)
                      .|+++|+||+|+....
T Consensus       219 ~pvilVlNK~Dl~~~~  234 (550)
T 2qpt_A          219 DKIRVVLNKADMVETQ  234 (550)
T ss_dssp             GGEEEEEECGGGSCHH
T ss_pred             CCEEEEEECCCccCHH
Confidence            8899999999997543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.72  E-value=2.3e-20  Score=126.94  Aligned_cols=150  Identities=18%  Similarity=0.220  Sum_probs=88.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEE------------EEEEEEC-Ce------------------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFL------------SKTMYLE-DR------------------   56 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------   56 (170)
                      ...+|+++|.+|+|||||+++|+...+...+.++...+..            ......+ +.                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999999987554433344333322            1111111 10                  


Q ss_pred             -EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880           57 -TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        57 -~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (170)
                       ...+.++|++|.-...   ..+-...+..+.+.|..+......  .. ...     ...|.++++||+|+.+......+
T Consensus       117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~-----~~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI-----MKTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH-----HTTCSEEEEECGGGHHHHTCCHH
T ss_pred             CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH-----hhcCCEEEEeccccCchhHHHHH
Confidence             1135555555521000   001112344556666432211100  00 011     13677999999998655445667


Q ss_pred             HHHHHHhhc--CCeEEEEecCCCCChHHHhhcCCC
Q 030880          136 EGEAKSREL--NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       136 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++..+++..  +++++++|+++|.|++++|++|.+
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~  220 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEK  220 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHH
Confidence            777777654  579999999999999999998754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.72  E-value=2.2e-17  Score=130.43  Aligned_cols=118  Identities=17%  Similarity=0.172  Sum_probs=84.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCC------------CC----cccc--eeeeEEEEEEEE------------ECC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKF------------DN----TYQA--TIGIDFLSKTMY------------LED   55 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~------------~~----~~~~--~~~~~~~~~~~~------------~~~   55 (170)
                      .....||+++|+.++|||||+++|+....            .+    +..+  +...........            .++
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~   95 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   95 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccC
Confidence            34567999999999999999999986411            00    0011  111111111111            234


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ..+.+++|||||+.+|...+..+++.+|++|+|+|+++..+++....|.... .   .++|+++++||+|+.
T Consensus        96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            4789999999999999999999999999999999999987777665554332 2   468999999999985

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.70  E-value=6.8e-18  Score=121.90  Aligned_cols=101  Identities=16%  Similarity=0.053  Sum_probs=66.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--H
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--I  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~  134 (170)
                      ++.+.+|||||...   ........+|++++|+|.+..+....+...   +     ...|.++|+||+|+.+.....  .
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---~-----~~~p~ivVlNK~Dl~~~~~~~~~~  239 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG---V-----LELADIVVVNKADGEHHKEARLAA  239 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT---S-----GGGCSEEEEECCCGGGHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh---H-----hhcCCEEEEECCCCcChhHHHHHH
Confidence            46799999999432   233446899999999998765444322211   1     236889999999986432221  1


Q ss_pred             HHHHHHHh-------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          135 EEGEAKSR-------ELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       135 ~~~~~~~~-------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .+......       ..+.+++.+|+++|.|+++++++|.+
T Consensus       240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~  280 (355)
T 3p32_A          240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVER  280 (355)
T ss_dssp             HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence            11111111       11578999999999999999998753

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=3.3e-16  Score=118.53  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=79.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC------------------CC----cccceeeeEEEEEEEEECCeEEEEEEEeC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF------------------DN----TYQATIGIDFLSKTMYLEDRTVRLQLWDT   65 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~------------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~   65 (170)
                      +.-||+|+|..++|||||..+|+....                  .+    +.....++......+.+  ..++++++||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlIDT  107 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLDT  107 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEECC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEeC
Confidence            356899999999999999999974211                  01    11111111112222233  3478999999


Q ss_pred             CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ||+..|.......++-+|++|+|+|+...-..+....| ..+..   .++|.++++||+|...
T Consensus       108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred             CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence            99999999999999999999999999876433333344 33333   4699999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.67  E-value=2.6e-16  Score=113.60  Aligned_cols=154  Identities=16%  Similarity=0.109  Sum_probs=92.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECC-------------------eEEEEEEEeCCCccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLED-------------------RTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~i~D~~g~~~   70 (170)
                      ++|.++|.+|+|||||++++.+........+..+.+.......+++                   ....+.+||+||..+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~   81 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK   81 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence            6899999999999999999997642111111111111111111111                   235799999999876


Q ss_pred             ccc----c---chhhhcCCcEEEEEEeCCCh----------hhHHhHHHHHHHH--------------------------
Q 030880           71 FRS----L---IPSYIRDSSVAVVVYDVASR----------QSFLNTSKWIDEV--------------------------  107 (170)
Q Consensus        71 ~~~----~---~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~--------------------------  107 (170)
                      ..+    +   ....++++|++++|+|+++.          +.+.....+..++                          
T Consensus        82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~  161 (368)
T 2dby_A           82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERL  161 (368)
T ss_dssp             CCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             cccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHH
Confidence            432    2   22347899999999999852          1121111100000                          


Q ss_pred             ---------H----H-------------------hc-CCCCeEEEEEeCCCCC--Cc-cccCHHHHHHHHhhcCCeEEEE
Q 030880          108 ---------R----T-------------------ER-GSDVIIVLVGNKTDLV--EK-RQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus       108 ---------~----~-------------------~~-~~~~p~ivv~nK~D~~--~~-~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                               .    .                   +. ...+|+++++||.|..  +. .......++.+++..++.++++
T Consensus       162 ~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~i  241 (368)
T 2dby_A          162 PLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVV  241 (368)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEe
Confidence                     0    0                   00 1237999999999742  21 1234567788888889999999


Q ss_pred             ecCCCCChHHHh
Q 030880          152 SAKAGFNIKVCL  163 (170)
Q Consensus       152 s~~~~~~i~~~~  163 (170)
                      ||+...++.+++
T Consensus       242 SAk~E~el~eL~  253 (368)
T 2dby_A          242 SARLEAELAELS  253 (368)
T ss_dssp             CHHHHHHHHTSC
T ss_pred             echhHHHHHHhc
Confidence            998866655443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.67  E-value=4.3e-16  Score=110.10  Aligned_cols=99  Identities=19%  Similarity=0.137  Sum_probs=82.7

Q ss_pred             cccccccchhhhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC-HHHHHHHHhhcC
Q 030880           68 QERFRSLIPSYIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS-IEEGEAKSRELN  145 (170)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~  145 (170)
                      ++++..+...+++++|++++|+|++++. ++..+.+|+..+..   .++|+++|+||+|+.+...+. .++...+.+..+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6778888888999999999999999986 88888999887654   469999999999997554322 355666777788


Q ss_pred             CeEEEEecCCCCChHHHhhcCCCC
Q 030880          146 VMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       146 ~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      ++++++||++|.|++++|+.+...
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~G~  166 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLEGF  166 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred             CeEEEEECCCCCCHHHHHhhccCc
Confidence            999999999999999999988654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.64  E-value=7.2e-17  Score=116.19  Aligned_cols=100  Identities=12%  Similarity=0.025  Sum_probs=60.1

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHH
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE  136 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  136 (170)
                      ++.+.++||+|...   ........+|.+++|+|++.+........   .+     ...|.++++||+|+.+..... ..
T Consensus       166 ~~~~iliDT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~~-~~  233 (349)
T 2www_A          166 GYDIILIETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPAR-RI  233 (349)
T ss_dssp             TCSEEEEECCCC-----CHHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHHH-HH
T ss_pred             CCCEEEEECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhHH-HH
Confidence            35789999999542   12445679999999999987543221211   11     235778999999985422110 11


Q ss_pred             HHHHH---h-------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          137 GEAKS---R-------ELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       137 ~~~~~---~-------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ...+.   +       ..+.+++.+|+++|.|+++++++|.+
T Consensus       234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~  275 (349)
T 2www_A          234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKD  275 (349)
T ss_dssp             HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHH
Confidence            11221   1       11457899999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.61  E-value=3.9e-16  Score=108.21  Aligned_cols=106  Identities=17%  Similarity=0.051  Sum_probs=65.1

Q ss_pred             EEEEEEeCCCcccccccch------hhhcCCcEEEEEEeCCCh---hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           58 VRLQLWDTAGQERFRSLIP------SYIRDSSVAVVVYDVASR---QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      +.+.+|||||..+......      ..+.. +++++++|....   ..+.....+...  .....+.|+++|+||+|+..
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~iv~NK~D~~~  185 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALL--IDLRLGATTIPALNKVDLLS  185 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHH--HHHHHTSCEEEEECCGGGCC
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHH--HhcccCCCeEEEEecccccc
Confidence            5799999999876543221      23456 888888887543   222222211111  11123589999999999865


Q ss_pred             ccccCHHHHHH----------------------------HHhhcC--CeEEEEecCCCCChHHHhhcCCC
Q 030880          129 KRQVSIEEGEA----------------------------KSRELN--VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       129 ~~~~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ....  ++...                            +++..+  .+++++|++++.|+++++++|.+
T Consensus       186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~  253 (262)
T 1yrb_A          186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYE  253 (262)
T ss_dssp             HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHH
T ss_pred             cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHH
Confidence            4321  11111                            123333  48999999999999999998754

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.5e-14  Score=103.29  Aligned_cols=136  Identities=13%  Similarity=0.113  Sum_probs=90.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cchhhhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LIPSYIR   80 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~   80 (170)
                      ...+|.++|.|++|||||+|+|++........|+++.+.....+.+.+  .++.++|+||..+-..       .....++
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            346899999999999999999998765545556666676666666666  5688999999543211       1223467


Q ss_pred             CCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC--------ccccCHHHHHHHHhhcCC
Q 030880           81 DSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE--------KRQVSIEEGEAKSRELNV  146 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~  146 (170)
                      ++|++++|+|++++.. ++.+...+..+... -...|.+++.||.|...        ......++.+.+...+.+
T Consensus       149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~~~-l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLHHKQIIEKELEGVGIR-LNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             HCSEEEEEEETTSHHHHHHHHHHHHHHTTEE-ETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             hcCccccccccCccHHHHHHHHHHHHHhhHh-hccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            8999999999998733 22233333222111 14567788899999742        233456666666665554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.60  E-value=3.8e-16  Score=112.23  Aligned_cols=101  Identities=16%  Similarity=0.070  Sum_probs=62.7

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--  134 (170)
                      ++.+.++||||......   ...+.+|++++|+|++....+..+..   ..     .+.|.++|+||+|+.+......  
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            45799999999654332   34689999999999876543222111   10     1367799999999865322211  


Q ss_pred             HHHHHHHhhc-------CCeEEEEecCCCCChHHHhhcCCC
Q 030880          135 EEGEAKSREL-------NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       135 ~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++........       ..+++.+|+++|.|+++++++|.+
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~  257 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIID  257 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHH
Confidence            1222211121       357899999999999999988753

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.58  E-value=3.1e-15  Score=116.16  Aligned_cols=157  Identities=18%  Similarity=0.177  Sum_probs=94.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc-ceeeeE----------------------------------------
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ-ATIGID----------------------------------------   45 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~----------------------------------------   45 (170)
                      ....+|+++|.+++|||||+|+|++..+.+... +++...                                        
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            345699999999999999999999976632211 111000                                        


Q ss_pred             ----------EEEEEEEECCeEEEEEEEeCCCccc-------------ccccchhhh-cCCcEEEEEEeCCChhhHHhHH
Q 030880           46 ----------FLSKTMYLEDRTVRLQLWDTAGQER-------------FRSLIPSYI-RDSSVAVVVYDVASRQSFLNTS  101 (170)
Q Consensus        46 ----------~~~~~~~~~~~~~~~~i~D~~g~~~-------------~~~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~  101 (170)
                                .....+..++ ...+.++||||...             ...+...++ ..+|++++|+|++++..-.+..
T Consensus       129 ~g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             cCCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                      0000011111 12578999999543             112334444 5789999999998653222222


Q ss_pred             HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH--hhcC-CeEEEEecCCCCChHHHhhcCC
Q 030880          102 KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS--RELN-VMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       102 ~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~-~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .++..+   ...+.|+++|+||+|+.+.............  ...+ ..++.+||++|.|++++++.+.
T Consensus       208 ~ll~~L---~~~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~  273 (772)
T 3zvr_A          208 KIAKEV---DPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALA  273 (772)
T ss_dssp             HHHHHH---CTTCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHH
T ss_pred             HHHHHH---HhcCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHH
Confidence            223333   2356899999999999765443322111000  0123 3678899999999999887764

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.58  E-value=4.1e-16  Score=120.13  Aligned_cols=115  Identities=14%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC--CCC------------Ccc--cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD--KFD------------NTY--QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS   73 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~--~~~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~   73 (170)
                      .||+|+|+.++|||||..+|+..  ...            +..  ..-.+.+.......+.-.+++++++|||||..|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            58999999999999999999742  110            000  00011122222222333456899999999999999


Q ss_pred             cchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           74 LIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        74 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      .....++-+|++|+|+|+...-..+.. ..+..+..+   ++|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999865222222 222333333   488899999999753

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.56  E-value=7.1e-14  Score=109.01  Aligned_cols=125  Identities=20%  Similarity=0.226  Sum_probs=80.6

Q ss_pred             CCCcCCCC-ceeEEEEcCCCCCHHHHHHHHhcC--------CCC----------CcccceeeeEEEEEEEEEC-----Ce
Q 030880            1 MAPVSALA-KYKLVFLGDQSVGKTSIITRFMYD--------KFD----------NTYQATIGIDFLSKTMYLE-----DR   56 (170)
Q Consensus         1 m~~~~~~~-~~~i~v~G~~~~GKstli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~-----~~   56 (170)
                      |+...+.. --||+|+|+.++|||||..+|+..        ...          .+.....++......+.+.     ..
T Consensus         4 m~~~~p~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~   83 (709)
T 4fn5_A            4 MARTTPINRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYD   83 (709)
T ss_dssp             --CCSCGGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSC
T ss_pred             CCCCCchHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCC
Confidence            44444433 358999999999999999999742        110          0111112222222222222     23


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      .+.++++|||||..|.......++-+|++|+|+|+...-..+....| .....   .++|.++++||+|....
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~---~~lp~i~~iNKiDr~~a  152 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANK---YGVPRIVYVNKMDRQGA  152 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---HTCCEEEEEECSSSTTC
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHH---cCCCeEEEEccccccCc
Confidence            68999999999999999999999999999999999865333333333 33333   35899999999998544

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=96.21  Aligned_cols=102  Identities=7%  Similarity=-0.059  Sum_probs=69.4

Q ss_pred             CCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHH---HHhc--CCCCeEEEEEeCC-CCCCccccCHHHHHH
Q 030880           66 AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV---RTER--GSDVIIVLVGNKT-DLVEKRQVSIEEGEA  139 (170)
Q Consensus        66 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~---~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~  139 (170)
                      +|++.++.+|..|++++|++|+|+|.++.+.++ .+..+.++   ....  ..++|++|++||. |+..  ..+..++.+
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e  186 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  186 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence            488999999999999999999999999886543 44444333   2222  2578999999995 6643  344444443


Q ss_pred             HHh----hcCCeEEEEecCCCCChHHHhhcCCCCC
Q 030880          140 KSR----ELNVMFIETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       140 ~~~----~~~~~~~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      ...    ...+.+..|||.+|+|+.+.++||.+.+
T Consensus       187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l  221 (227)
T 3l82_B          187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEV  221 (227)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred             HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence            321    2356899999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.52  E-value=1.8e-15  Score=108.37  Aligned_cols=101  Identities=11%  Similarity=0.032  Sum_probs=60.3

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHH
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEE  136 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  136 (170)
                      +..+.++||+|..+..   ......+|.+++++|.+..+..+.+....   .     ..+.++++||+|+..........
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHH
Confidence            4579999999965321   23357899999999986543221111111   1     13457777999974322221112


Q ss_pred             HHHHHhh----------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          137 GEAKSRE----------LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       137 ~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ...+...          .+.+++.+|++++.|++++++.|.+
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            2222221          1357889999999999999987743

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.47  E-value=6.9e-14  Score=101.49  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=51.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQERFR   72 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~   72 (170)
                      ...+|.++|.+|+|||||+|+|.+........|+.+.+.....+.+++.               ...+.+||+||.....
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a  100 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA  100 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence            4578999999999999999999987654333444444433333433332               2359999999977644


Q ss_pred             c-------cchhhhcCCcEEEEEEeCCChh
Q 030880           73 S-------LIPSYIRDSSVAVVVYDVASRQ   95 (170)
Q Consensus        73 ~-------~~~~~~~~~~~~i~v~d~~~~~   95 (170)
                      +       .+..+++++|++++|+|+++.+
T Consensus       101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD  130 (396)
T ss_dssp             ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred             chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence            3       3456789999999999998543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=1.2e-11  Score=89.91  Aligned_cols=86  Identities=17%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccc-
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER-   70 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~-   70 (170)
                      ...++.++|++|+|||||+|.|++... .....|+++.+.....+.+.+.               ...+.+||+||... 
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            357899999999999999999998665 3333444444443334444431               13689999999543 


Q ss_pred             ------ccccchhhhcCCcEEEEEEeCCC
Q 030880           71 ------FRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        71 ------~~~~~~~~~~~~~~~i~v~d~~~   93 (170)
                            +.......++++|+++.++|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence                  22234455789999999999863

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.39  E-value=5.6e-13  Score=92.14  Aligned_cols=102  Identities=6%  Similarity=-0.088  Sum_probs=72.3

Q ss_pred             CCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHH---HHH-Hhc-CCCCeEEEEEeC-CCCCCccccCHHHHH
Q 030880           65 TAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID---EVR-TER-GSDVIIVLVGNK-TDLVEKRQVSIEEGE  138 (170)
Q Consensus        65 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~---~~~-~~~-~~~~p~ivv~nK-~D~~~~~~~~~~~~~  138 (170)
                      .+||+..+.+|..|++++|++|+|+|.++.+.++ .+..+.   .+. ... ..++|++|++|| .|+..  ..+..++.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4688999999999999999999999999987544 333332   222 222 267999999996 58743  34444444


Q ss_pred             HHHh----hcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          139 AKSR----ELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       139 ~~~~----~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      +...    .....+..|||.+|+|+.+.++||.+.
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~  305 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEE  305 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHH
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHH
Confidence            3321    234689999999999999999998654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.20  E-value=1.4e-12  Score=94.56  Aligned_cols=142  Identities=16%  Similarity=0.194  Sum_probs=82.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC------CCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------cc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------LI   75 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~   75 (170)
                      ..+++++|.+|+|||||+|+|++.      .......+.++.+.  .......   .+.++||||......       ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~--~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM--IEIPLES---GATLYDTPGIINHHQMAHFVDARD  236 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE--EEEECST---TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee--EEEEeCC---CeEEEeCCCcCcHHHHHHHHhHHH
Confidence            457999999999999999999975      22222222222222  2222232   278999999543221       11


Q ss_pred             hhhh---cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880           76 PSYI---RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        76 ~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                      ...+   +..+.++++.+....-.+..+.+    +......+.|+++++||.|..+..... .....+.+..|..+...+
T Consensus       237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~~-~~~~~~~~~~g~~l~p~~  311 (369)
T 3ec1_A          237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKLE-KADSLYANQLGELLSPPS  311 (369)
T ss_dssp             HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEGG-GHHHHHHHHBTTTBCSSC
T ss_pred             HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccHH-HHHHHHHHhcCCccCCCC
Confidence            1222   67899999998743211111111    111223568999999999987554433 334455666776555555


Q ss_pred             cCCCCChH
Q 030880          153 AKAGFNIK  160 (170)
Q Consensus       153 ~~~~~~i~  160 (170)
                      +....++.
T Consensus       312 ~~~~~~~~  319 (369)
T 3ec1_A          312 KRYAAEFP  319 (369)
T ss_dssp             GGGTTTCC
T ss_pred             chhhhhcc
Confidence            55544443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.17  E-value=2.1e-11  Score=91.31  Aligned_cols=150  Identities=18%  Similarity=0.177  Sum_probs=82.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc------CCC----CCccccee-----------eeEEEEEEEE-------------E
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY------DKF----DNTYQATI-----------GIDFLSKTMY-------------L   53 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~------~~~----~~~~~~~~-----------~~~~~~~~~~-------------~   53 (170)
                      ....|+++|.+|+||||++++|..      .+.    .+.+.+..           ..++......             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999983      211    00000000           0111110000             0


Q ss_pred             CCeEEEEEEEeCCCcccccc-cchh---h--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCCC
Q 030880           54 EDRTVRLQLWDTAGQERFRS-LIPS---Y--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTDL  126 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~  126 (170)
                      ....+.+.|+||||...... .+..   .  ...+|.+++|+|+.......   .....+..    .+|+ .+|+||+|.
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~  252 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTS
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCcc
Confidence            00346799999999653221 1111   1  23789999999998754321   11222222    1564 788899998


Q ss_pred             CCccccCHHHHHHHHhhcCCeE------------------EEEecCCCCC-hHHHhhcCCC
Q 030880          127 VEKRQVSIEEGEAKSRELNVMF------------------IETSAKAGFN-IKVCLMLHPN  168 (170)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~l~~  168 (170)
                      ......    +.......+.++                  ..+|+..|.| +.++++++.+
T Consensus       253 ~~~~g~----~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e  309 (504)
T 2j37_W          253 HAKGGG----ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNE  309 (504)
T ss_dssp             CCCCTH----HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTT
T ss_pred             ccchHH----HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHH
Confidence            633221    222223333332                  3468888999 8888887764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.15  E-value=3.9e-11  Score=86.94  Aligned_cols=94  Identities=19%  Similarity=0.276  Sum_probs=71.9

Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH----Hh
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SR  142 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  142 (170)
                      ..+.|.+....+.+.++++++|+|++++.     ..|...+.+.. .+.|+++|+||+|+.+.. ...++..++    ++
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            35778888899999999999999999864     34555555554 378999999999996543 333444443    56


Q ss_pred             hcCC---eEEEEecCCCCChHHHhhcCC
Q 030880          143 ELNV---MFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       143 ~~~~---~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ..|+   .++.+||++|.|++++++.|.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~  155 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIE  155 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhh
Confidence            6677   799999999999999998874

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.15  E-value=2e-10  Score=84.15  Aligned_cols=139  Identities=14%  Similarity=0.229  Sum_probs=69.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc----cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc------------
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY----QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS------------   73 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~------------   73 (170)
                      ++++++|++|+|||||++.|.+.......    .+..............+-...++++|++|......            
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            56999999999999999999886432111    11111111111111122234789999988542210            


Q ss_pred             --cchhh-------------hcC--CcE-EEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--
Q 030880           74 --LIPSY-------------IRD--SSV-AVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--  133 (170)
Q Consensus        74 --~~~~~-------------~~~--~~~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--  133 (170)
                        .+..+             ...  +|+ +.++.|...+-+..+    +..+... ..++|+|+|.||+|...+.+..  
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L-~~~~~vI~Vi~KtD~Lt~~E~~~l  197 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKL-DSKVNIIPIIAKADAISKSELTKF  197 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHT-CSCSEEEEEESCGGGSCHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHH-hhCCCEEEEEcchhccchHHHHHH
Confidence              01111             111  233 445556553322222    1222222 2579999999999986544322  


Q ss_pred             HHHHHHHHhhcCCeEEEEec
Q 030880          134 IEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~s~  153 (170)
                      ...+.......|+.++.+|.
T Consensus       198 ~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          198 KIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHHcCCcEEecCC
Confidence            12233333455777777774

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.10  E-value=3.6e-12  Score=92.37  Aligned_cols=136  Identities=12%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCC-------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc----cchh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDN-------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS----LIPS   77 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~----~~~~   77 (170)
                      ..+++++|.+|+|||||+|+|++.....       ...+.+  +..........   .+.++||||......    +...
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gt--T~~~~~~~~~~---~~~liDtPG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGT--TLDLIDIPLDE---ESSLYDTPGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSS---SCEEEECCCBCCTTSGGGGSCHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCe--ecceEEEEecC---CeEEEeCCCcCcHHHHHHHhhHH
Confidence            3689999999999999999999753111       111222  22222222232   278999999543221    1111


Q ss_pred             h------hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEE
Q 030880           78 Y------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus        78 ~------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                      .      .+..+.++++++....-....+..    +......+.|+++++||.|..+.... ......+.+..|..+...
T Consensus       235 ~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~  309 (368)
T 3h2y_A          235 SLKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPP  309 (368)
T ss_dssp             HHHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSS
T ss_pred             HHHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCC
Confidence            1      256788888888743211111111    11122356899999999998755433 233445555666544444


Q ss_pred             ecC
Q 030880          152 SAK  154 (170)
Q Consensus       152 s~~  154 (170)
                      ++.
T Consensus       310 ~~~  312 (368)
T 3h2y_A          310 TPE  312 (368)
T ss_dssp             CHH
T ss_pred             chh
Confidence            443

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.07  E-value=3.3e-10  Score=78.79  Aligned_cols=136  Identities=13%  Similarity=0.168  Sum_probs=67.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccc------ce-eeeEEEEEEEEEC--CeEEEEEEEeCCCcccccc------
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ------AT-IGIDFLSKTMYLE--DRTVRLQLWDTAGQERFRS------   73 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~-~~~~~~~~~~~~~--~~~~~~~i~D~~g~~~~~~------   73 (170)
                      .++++++|++|+|||||++.+.+...+....      +. .............  +-...++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999998743322110      00 0000000111111  1123689999998432100      


Q ss_pred             cc----------------------hhhhcCCcEEEEEEeCC-ChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           74 LI----------------------PSYIRDSSVAVVVYDVA-SRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        74 ~~----------------------~~~~~~~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      ..                      ...+..+++.+++.|.. .+-.-.+ ...+..+   ... ++++++.+|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L---~~~-~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHL---SKV-VNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHH---HTT-SEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHH---Hhc-CcEEEEEeccccCCHH
Confidence            00                      01122468888888854 2211111 2222223   223 8999999999986543


Q ss_pred             ccC--HHHHHHHHhhcCCeEE
Q 030880          131 QVS--IEEGEAKSRELNVMFI  149 (170)
Q Consensus       131 ~~~--~~~~~~~~~~~~~~~~  149 (170)
                      +..  ...........++.++
T Consensus       157 e~~~~k~~i~~~l~~~~i~i~  177 (270)
T 3sop_A          157 EKSEFKQRVRKELEVNGIEFY  177 (270)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHcCcccc
Confidence            221  1223333445555544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=1.4e-10  Score=84.02  Aligned_cols=94  Identities=21%  Similarity=0.247  Sum_probs=70.0

Q ss_pred             CcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHH----Hh
Q 030880           67 GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAK----SR  142 (170)
Q Consensus        67 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~----~~  142 (170)
                      .++.|.+....++++++++++|+|++++.+     .|..++.... .+.|+++|+||+|+.+.. ...+...++    ++
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~  129 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMAE  129 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHHH
Confidence            477888888888899999999999998864     3444444443 378999999999997543 233334333    55


Q ss_pred             hcCC---eEEEEecCCCCChHHHhhcCC
Q 030880          143 ELNV---MFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       143 ~~~~---~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ..|.   .++.+||++|.|++++++.+.
T Consensus       130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~  157 (369)
T 3ec1_A          130 ELGLCPVDVCLVSAAKGIGMAKVMEAIN  157 (369)
T ss_dssp             TTTCCCSEEEECBTTTTBTHHHHHHHHH
T ss_pred             HcCCCcccEEEEECCCCCCHHHHHHHHH
Confidence            6676   789999999999999998774

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.94  E-value=1e-09  Score=76.78  Aligned_cols=96  Identities=9%  Similarity=0.050  Sum_probs=65.3

Q ss_pred             EEeCCCccc-ccccchhhhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHH
Q 030880           62 LWDTAGQER-FRSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGE  138 (170)
Q Consensus        62 i~D~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  138 (170)
                      +-..|||.. ........++++|+++.|+|+.++.+...  +.+++        .++|.++++||+|+.+...  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            445788763 33455666899999999999999876643  33332        4689999999999975321  22333


Q ss_pred             HHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880          139 AKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       139 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .+.+..+++++.+|++++.|++++++.+.
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~  101 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASK  101 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHH
Confidence            44445678999999999999999887653

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.89  E-value=6.5e-09  Score=76.18  Aligned_cols=150  Identities=11%  Similarity=0.114  Sum_probs=78.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCccccee-eeEE--EEEEEEECCeEEEEEEEeCCCcccccccchhh-----hc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-GIDF--LSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY-----IR   80 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~-----~~   80 (170)
                      ...++++|++|+|||||+|.+.+-..+....... +.+.  ...... ......++++|++|..........+     +.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            3479999999999999999999843322211111 0000  001111 1111157899999854222112222     23


Q ss_pred             CCcEEEEEEeCCC--hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC--C-----ccccCH----HHHHHHH----hh
Q 030880           81 DSSVAVVVYDVAS--RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV--E-----KRQVSI----EEGEAKS----RE  143 (170)
Q Consensus        81 ~~~~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~--~-----~~~~~~----~~~~~~~----~~  143 (170)
                      ..+..++ ++...  ++..    .....+..   .+.|+++|.||.|+.  +     -.....    +.+.++.    .+
T Consensus       148 ~~~~~~~-lS~G~~~kqrv----~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          148 EYDFFII-ISATRFKKNDI----DIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             GCSEEEE-EESSCCCHHHH----HHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEE-eCCCCccHHHH----HHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            4455554 77652  2111    11222222   358999999999864  1     111122    2233332    12


Q ss_pred             cC---CeEEEEec--CCCCChHHHhhcCC
Q 030880          144 LN---VMFIETSA--KAGFNIKVCLMLHP  167 (170)
Q Consensus       144 ~~---~~~~~~s~--~~~~~i~~~~~~l~  167 (170)
                      .+   ..++.+|+  .++.|++++.+.+.
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~  248 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLI  248 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence            22   36788899  56667888777654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.82  E-value=1.9e-08  Score=74.26  Aligned_cols=102  Identities=17%  Similarity=0.129  Sum_probs=57.4

Q ss_pred             eEEEEEEEeCCCcccccc-cch-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCC-e-EEEEEeCCCCC
Q 030880           56 RTVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDV-I-IVLVGNKTDLV  127 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~  127 (170)
                      ..+.+.++||||...... ...     ..+..+|.+++|.|+.....   .......+   . ... | ..+|.||.|..
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~  251 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGS  251 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSC
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCc
Confidence            346789999999654211 111     11236899999999875532   22222222   1 234 5 78889999974


Q ss_pred             CccccCHHHHHHHHhhcCCeEEE------------------EecCCCCC-hHHHhhcCCC
Q 030880          128 EKRQVSIEEGEAKSRELNVMFIE------------------TSAKAGFN-IKVCLMLHPN  168 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~------------------~s~~~~~~-i~~~~~~l~~  168 (170)
                      ...    ..+.......+.++..                  +|+..|.| +..+++.+.+
T Consensus       252 ~~~----g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~  307 (432)
T 2v3c_C          252 AKG----GGALSAVAETKAPIKFIGIGEGIDDLEPFDPKKFISRLLGMGDLESLLEKAED  307 (432)
T ss_dssp             STT----HHHHHHHHHSSCCEEEECCSSSSSSCCBCCHHHHHHHHTCSSCSSTTSSTTTS
T ss_pred             cch----HHHHHHHHHHCCCEEEeecCccccccccCCHHHHHHHHcCCCcHHHHHHHHHH
Confidence            322    2233455556655443                  35566666 6666665543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.81  E-value=1.1e-08  Score=75.41  Aligned_cols=143  Identities=17%  Similarity=0.161  Sum_probs=79.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------CC----CCcccc-----------eeeeEEEEEEEEE-------------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD------KF----DNTYQA-----------TIGIDFLSKTMYL-------------   53 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~------~~----~~~~~~-----------~~~~~~~~~~~~~-------------   53 (170)
                      ++..|+++|++|+||||++..|...      +.    .+.+.+           ..+.+.+......             
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999988641      10    000000           0011111100000             


Q ss_pred             CCeEEEEEEEeCCCcccccccc-h-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           54 EDRTVRLQLWDTAGQERFRSLI-P-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        54 ~~~~~~~~i~D~~g~~~~~~~~-~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ....+.+.|+||+|........ .     .....+|.+++|.|+...+....   ....+...   -.+..+|.||.|..
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~~---~~i~gVIlTKlD~~  252 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKEA---TPIGSIIVTKLDGS  252 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHHS---CTTEEEEEECCSSC
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHhh---CCCeEEEEECCCCc
Confidence            0123678999999944322111 1     11336899999999886543222   22233222   13456788999975


Q ss_pred             CccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ...    ..+.......+.++..++.  |++++++
T Consensus       253 ~~g----G~~ls~~~~~g~PI~fig~--Ge~vddL  281 (443)
T 3dm5_A          253 AKG----GGALSAVAATGAPIKFIGT--GEKIDDI  281 (443)
T ss_dssp             SSH----HHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred             ccc----cHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence            432    3355556677888777775  8887654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.71  E-value=1.3e-08  Score=70.44  Aligned_cols=92  Identities=13%  Similarity=0.060  Sum_probs=63.3

Q ss_pred             CCCcccc-cccchhhhcCCcEEEEEEeCCChhhHHh--HHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH
Q 030880           65 TAGQERF-RSLIPSYIRDSSVAVVVYDVASRQSFLN--TSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS  141 (170)
Q Consensus        65 ~~g~~~~-~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~  141 (170)
                      .|||... .......++++|+++.|+|+.++.+...  +. ++         ++|.++|+||+|+.+...  .+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---------~k~~iivlNK~DL~~~~~--~~~~~~~~   71 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---------RKETIILLNKVDIADEKT--TKKWVEFF   71 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---------TSEEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---------CCCcEEEEECccCCCHHH--HHHHHHHH
Confidence            3666533 2345666889999999999998866543  22 21         689999999999975421  12333444


Q ss_pred             hhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880          142 RELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       142 ~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      +..+.++ .+|++++.|++++++.+.+.
T Consensus        72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~~   98 (262)
T 3cnl_A           72 KKQGKRV-ITTHKGEPRKVLLKKLSFDR   98 (262)
T ss_dssp             HHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred             HHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence            5567887 99999999999999988764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.66  E-value=2.9e-08  Score=69.38  Aligned_cols=57  Identities=23%  Similarity=0.320  Sum_probs=35.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE   69 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~   69 (170)
                      ..++++++|.+|+|||||+|+|.+...... ..+..+....  ......   .+.++||||..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCcC
Confidence            468999999999999999999998663222 2222222221  122222   58899999954

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.65  E-value=1.2e-08  Score=70.67  Aligned_cols=57  Identities=23%  Similarity=0.289  Sum_probs=34.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      ++++++|.+|+|||||+|+|.+...... .++.+.+.........   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRASSV-GAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccccc-CCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            5999999999999999999998665322 1222212111122222   2578999999654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.65  E-value=3.1e-08  Score=69.86  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=65.1

Q ss_pred             cccchhhhcCCcEEEEEEeCCChhh-HHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHHHHhhcCCeE
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQS-FLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEAKSRELNVMF  148 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~  148 (170)
                      ..+....+.++|.+++|+|+.+|.. ...+.+++....   ..++|.++|+||+|+.+....  ..+......+..|.++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v  153 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV  153 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence            3445556889999999999997753 333444443332   246888999999999765320  1233344444568899


Q ss_pred             EEEecCCCCChHHHhhcCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +.+|+.++.|++++++.+..
T Consensus       154 ~~~sa~~~~g~~~L~~~~~G  173 (307)
T 1t9h_A          154 YLTSSKDQDSLADIIPHFQD  173 (307)
T ss_dssp             EECCHHHHTTCTTTGGGGTT
T ss_pred             EEEecCCCCCHHHHHhhcCC
Confidence            99999999999998876643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.60  E-value=7.3e-08  Score=71.00  Aligned_cols=93  Identities=15%  Similarity=0.099  Sum_probs=55.9

Q ss_pred             EEEEEEEeCCCccc--ccc-cc---hh--hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           57 TVRLQLWDTAGQER--FRS-LI---PS--YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        57 ~~~~~i~D~~g~~~--~~~-~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      .+.+.++||||...  ... ..   ..  .....+.+++|.|+...+....   ....+....   .+..|+.||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~~---~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQAS---PIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHHC---SSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhccc---CCcEEEEecccccc
Confidence            45788999999543  111 11   11  1225689999999876533222   223333222   34678889999753


Q ss_pred             ccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .    ...+.......+.++..++.  |+++++
T Consensus       253 ~----~G~als~~~~~g~Pi~fig~--Ge~v~d  279 (433)
T 3kl4_A          253 K----GGGALSAVVATGATIKFIGT--GEKIDE  279 (433)
T ss_dssp             C----HHHHHHHHHHHTCEEEEEEC--CSSSSC
T ss_pred             c----chHHHHHHHHHCCCEEEEEC--CCChHh
Confidence            2    24455566677888877775  777753

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.44  E-value=9.5e-07  Score=62.17  Aligned_cols=93  Identities=14%  Similarity=0.061  Sum_probs=57.1

Q ss_pred             EEEEEEEeCCCccc--ccc-cch-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCC
Q 030880           57 TVRLQLWDTAGQER--FRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLV  127 (170)
Q Consensus        57 ~~~~~i~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  127 (170)
                      .+.+.++||||...  ... +..     .....+|.+++|.|+....   +.......+..    ..| ..++.||.|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            45799999999665  211 111     1245789999999986432   22222222222    245 67788999974


Q ss_pred             CccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880          128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ..    ...+.......+.++..++  +|++++++
T Consensus       253 ~~----~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          253 AK----GGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             TT----HHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             cc----hHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence            32    2345567777888877766  57777654

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.42  E-value=2e-07  Score=71.11  Aligned_cols=63  Identities=14%  Similarity=0.066  Sum_probs=38.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-Ccccce--eeeEEEEEEEEE-CCeEEEEEEEeCCCccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQAT--IGIDFLSKTMYL-EDRTVRLQLWDTAGQER   70 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~--~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~   70 (170)
                      +..+|+++|.+++|||||+|+|++.... .....+  .+.....+.... ......+.++||||...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            4578999999999999999999987532 111111  111111111111 12345789999999653

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.34  E-value=3.5e-06  Score=60.06  Aligned_cols=93  Identities=13%  Similarity=0.089  Sum_probs=53.1

Q ss_pred             EEEEEEeCCCcccccccchh------hhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccc
Q 030880           58 VRLQLWDTAGQERFRSLIPS------YIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQ  131 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  131 (170)
                      ..+.++|++|..........      ..-..|-.+++.|.....   ++...+..+....  + ...++.||.|....  
T Consensus       212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~--~-it~iilTKlD~~a~--  283 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV--K-IDGIILTKLDADAR--  283 (328)
T ss_dssp             CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS--C-CCEEEEECGGGCSC--
T ss_pred             chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc--C-CCEEEEeCcCCccc--
Confidence            34667999996433221111      112578889999976543   2223333333222  2 23667799996332  


Q ss_pred             cCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880          132 VSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                        ...+.......+.++..++  +|++++++
T Consensus       284 --~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          284 --GGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             --CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             --hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence              2335566677788777776  77777543

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.33  E-value=1.9e-06  Score=61.99  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc-CHHHHHHHHhhcCCeEEEEecCCC
Q 030880           79 IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV-SIEEGEAKSRELNVMFIETSAKAG  156 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~  156 (170)
                      ..++|.+++|.+.. |. +...+.+++.....   .++|.+||+||+|+.+.... ..++........|++++.+|+.++
T Consensus       128 ~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          128 AANIDQIVIVSAIL-PELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EECCCEEEEEEEST-TTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            67999999887764 54 33345555444333   25788999999999754321 012223333467889999999999


Q ss_pred             CChHHHhhcCC
Q 030880          157 FNIKVCLMLHP  167 (170)
Q Consensus       157 ~~i~~~~~~l~  167 (170)
                      .|++++...+.
T Consensus       204 ~gl~~L~~~~~  214 (358)
T 2rcn_A          204 DGLKPLEEALT  214 (358)
T ss_dssp             BTHHHHHHHHT
T ss_pred             cCHHHHHHhcC
Confidence            99998876543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.33  E-value=1.2e-06  Score=67.51  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|++|+|||||++.+.+-.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC
T ss_pred             eEEEECCCCChHHHHHHHHhCCC
Confidence            49999999999999999998864

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.28  E-value=5.5e-08  Score=72.71  Aligned_cols=102  Identities=12%  Similarity=0.053  Sum_probs=58.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc--ccccc--------h
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER--FRSLI--------P   76 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~--~~~~~--------~   76 (170)
                      ..+..|+++|.+|+||||+.++|....... ..++..+..........+......+||..|.+.  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999987542211 111111110000000111112346788888632  23332        5


Q ss_pred             hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHh
Q 030880           77 SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE  110 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~  110 (170)
                      .++...++.++|+|.++. +.+.-..|+..+...
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            556678888999999987 455556665555443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.05  E-value=3.2e-06  Score=55.38  Aligned_cols=32  Identities=22%  Similarity=0.260  Sum_probs=23.5

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      |.+....+.-.++++|++|+|||||++.+.+.
T Consensus         1 ~~m~~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            1 MNMTDDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -----CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            55555556667999999999999999999875

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.88  E-value=1.6e-05  Score=58.87  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..-|.|+|++++|||+|+|+|++
T Consensus        67 v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           67 VVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHhh
Confidence            34588899999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.84  E-value=1.1e-05  Score=52.55  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+++++|++|+|||||++.+.+.
T Consensus         1 ~~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999988764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.82  E-value=0.00027  Score=52.31  Aligned_cols=84  Identities=13%  Similarity=0.006  Sum_probs=45.8

Q ss_pred             EEEEEEEeCCCcccccc-cch-----hhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCc
Q 030880           57 TVRLQLWDTAGQERFRS-LIP-----SYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK  129 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  129 (170)
                      .+.+.|+||||...... ...     .....++.+++|.|+......   ......+..    ..+ .-++.||.|....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~~----~l~i~gvVlnK~D~~~~  255 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFNE----ALPLTGVVLTKVDGDAR  255 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHHH----HSCCCCEEEECTTSSSC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHhc----cCCCeEEEEecCCCCcc
Confidence            46799999999544321 111     123478899999998754322   222222222    133 2457899997432


Q ss_pred             cccCHHHHHHHHhhcCCeEEEE
Q 030880          130 RQVSIEEGEAKSRELNVMFIET  151 (170)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                      .    ..+.......+.++..+
T Consensus       256 ~----g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          256 G----GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             C----THHHHHHHHHCCCEEEE
T ss_pred             H----HHHHHHHHHHCCCeEEE
Confidence            2    22334555556554433

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.77  E-value=2e-05  Score=52.01  Aligned_cols=29  Identities=21%  Similarity=0.414  Sum_probs=22.7

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++.+..--++++|++|+|||||++.|...
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            34445556889999999999999999864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.76  E-value=1.6e-05  Score=51.77  Aligned_cols=23  Identities=30%  Similarity=0.535  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      --++++|++|+|||||++.|...
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            35889999999999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.71  E-value=2e-05  Score=52.05  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.++++|++|+|||||++.+.+
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.69  E-value=3.4e-05  Score=49.74  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...++++|++|+||||+++.|..
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.64  E-value=4e-05  Score=49.67  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .....|++.|++|+||||+.+.|..
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHH
Confidence            3456799999999999999998864

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.64  E-value=2.7e-05  Score=50.22  Aligned_cols=20  Identities=20%  Similarity=0.532  Sum_probs=17.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 030880           11 KLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~   30 (170)
                      -++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            47899999999999999754

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.62  E-value=3.3e-05  Score=51.05  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|||||||++.+.+.
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHhh
Confidence            5889999999999999998764

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.61  E-value=3.7e-05  Score=49.64  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      +|+++|++||||||+.+.|..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            699999999999999998864

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.60  E-value=3.7e-05  Score=51.69  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      --++++|++|+|||||++.+.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            357899999999999999998743

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.59  E-value=4.4e-05  Score=50.44  Aligned_cols=24  Identities=25%  Similarity=0.319  Sum_probs=20.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..-.++++|++|+|||||++.|.+
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998864

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.59  E-value=4.5e-05  Score=50.43  Aligned_cols=26  Identities=27%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      ....++++|++||||||+++.|....
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34578999999999999999987654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.59  E-value=3.8e-05  Score=51.07  Aligned_cols=22  Identities=23%  Similarity=0.424  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|+|||||++.+.+-
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999988764

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.58  E-value=2.7e-05  Score=54.97  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|++|+|||||+|.|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            468999999999999999998754

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.57  E-value=6e-05  Score=49.12  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=22.9

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +.....+|+++|++||||||+.+.|...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3445568999999999999999988654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.57  E-value=4.2e-05  Score=51.35  Aligned_cols=24  Identities=33%  Similarity=0.647  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|++|+|||||++.+.+-.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            358899999999999999988643

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.56  E-value=4.9e-05  Score=49.75  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+++||+|+||+||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999864

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.55  E-value=0.00016  Score=48.20  Aligned_cols=86  Identities=7%  Similarity=-0.014  Sum_probs=56.3

Q ss_pred             EEEEEEEeCCCc-ccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHH
Q 030880           57 TVRLQLWDTAGQ-ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        57 ~~~~~i~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~  135 (170)
                      .+.+.++|+|+. ..  ......+..+|.+|++...+ ..+...+...+..+....  +.++.++.|+.+.....  ...
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~--~~~  139 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPYPSK--DGD  139 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTSC--HHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccch--HHH
Confidence            467899999975 32  33455678899999998865 556666666666665532  45678889999864301  134


Q ss_pred             HHHHHHhhcCCeEE
Q 030880          136 EGEAKSRELNVMFI  149 (170)
Q Consensus       136 ~~~~~~~~~~~~~~  149 (170)
                      +..+..++++.+++
T Consensus       140 ~~~~~l~~~g~~v~  153 (209)
T 3cwq_A          140 EARQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHHHTTCCBC
T ss_pred             HHHHHHHHcCCchh
Confidence            45555555666544

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.55  E-value=5.4e-05  Score=50.33  Aligned_cols=24  Identities=17%  Similarity=0.324  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +...+.++|+.|||||||++.+.+
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~   28 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALAR   28 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998765

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.54  E-value=4.8e-05  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      --++++|++|+|||||++.|....
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            358899999999999999998653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.53  E-value=6.3e-05  Score=50.02  Aligned_cols=24  Identities=13%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....+.|+|++|||||||++.+.+
T Consensus        21 ~g~~v~I~G~sGsGKSTl~~~l~~   44 (208)
T 3c8u_A           21 GRQLVALSGAPGSGKSTLSNPLAA   44 (208)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999997764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.49  E-value=7.1e-05  Score=49.76  Aligned_cols=24  Identities=17%  Similarity=0.230  Sum_probs=21.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +...|++.|.+||||||+.+.|..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A            8 RGALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998874

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.49  E-value=6.2e-05  Score=51.13  Aligned_cols=23  Identities=13%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|||||||++.+.+-.
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999887643

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.49  E-value=7.2e-05  Score=47.92  Aligned_cols=20  Identities=15%  Similarity=0.250  Sum_probs=18.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHH
Q 030880           10 YKLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l   29 (170)
                      ..|++.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46889999999999999999

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.47  E-value=7.2e-05  Score=49.55  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..-|+++|++|||||||++.|...
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            346889999999999999999754

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.47  E-value=7.2e-05  Score=47.65  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|+.|+|||||++.+.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            358899999999999999888754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.47  E-value=8.7e-05  Score=47.88  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999986

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.46  E-value=7.3e-05  Score=48.00  Aligned_cols=23  Identities=17%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..|+++|++||||||+.+.|...
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999988753

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.44  E-value=8.1e-05  Score=48.61  Aligned_cols=21  Identities=24%  Similarity=0.401  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++|++|+|||||++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999975

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.43  E-value=7.8e-05  Score=50.28  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999887643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.43  E-value=8.8e-05  Score=49.45  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999998854

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.43  E-value=8.3e-05  Score=47.60  Aligned_cols=21  Identities=10%  Similarity=0.240  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998864

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.42  E-value=0.00011  Score=47.36  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999998763

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.42  E-value=9.7e-05  Score=48.12  Aligned_cols=23  Identities=26%  Similarity=0.182  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.42  E-value=0.00013  Score=48.19  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=22.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...++.|++.|++||||||+.+.|..
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            34567899999999999999998864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.41  E-value=9.5e-05  Score=49.31  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++|+++|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999864

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.41  E-value=9.7e-05  Score=50.35  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988643

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.41  E-value=9.3e-05  Score=48.56  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5889999999999999988763

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.40  E-value=0.00011  Score=47.91  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=20.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++..|++.|.+||||||+.+.|..
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.40  E-value=0.00011  Score=50.06  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ...++++|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999998

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.39  E-value=0.00014  Score=47.33  Aligned_cols=23  Identities=17%  Similarity=0.250  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.39  E-value=9.9e-05  Score=53.16  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      .++++|++|+|||||+|.|.+...
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            589999999999999999997654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.39  E-value=9.8e-05  Score=51.36  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999988643

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.39  E-value=0.0001  Score=49.33  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.38  E-value=0.0001  Score=50.93  Aligned_cols=23  Identities=13%  Similarity=0.377  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.38  E-value=0.0001  Score=50.15  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999987643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.38  E-value=9.8e-05  Score=50.97  Aligned_cols=22  Identities=18%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      =.++++|++|||||||++.+.+
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHHH
Confidence            3589999999999999998876

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.37  E-value=0.00015  Score=48.08  Aligned_cols=24  Identities=25%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +...|++.|++||||||+.+.|..
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999999875

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.36  E-value=0.00019  Score=47.29  Aligned_cols=24  Identities=17%  Similarity=0.277  Sum_probs=20.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....|++.|++||||||+.+.|..
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998864

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.36  E-value=0.00012  Score=49.27  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.36  E-value=0.00011  Score=50.83  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998743

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.36  E-value=0.00011  Score=50.55  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.35  E-value=0.00013  Score=48.47  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++|+++|+|||||+|...+|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.35  E-value=0.00015  Score=47.06  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.34  E-value=0.00016  Score=50.56  Aligned_cols=25  Identities=20%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+.-|++.|++||||||+.+.|..
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999999964

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.34  E-value=0.00012  Score=49.46  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.34  E-value=0.00015  Score=47.26  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.34  E-value=0.00012  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcCC
Confidence            47899999999999999987643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.34  E-value=0.00014  Score=49.71  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999988643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.34  E-value=0.00012  Score=50.06  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999987653

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.34  E-value=0.00012  Score=48.27  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|+++|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.33  E-value=0.00011  Score=47.58  Aligned_cols=24  Identities=29%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.++++|++|+|||||++.+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.33  E-value=0.00013  Score=49.76  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.33  E-value=0.00013  Score=50.21  Aligned_cols=23  Identities=17%  Similarity=0.198  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988643

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.32  E-value=0.00018  Score=49.00  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+++|++.|++||||||+.+.|..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999999998864

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.32  E-value=0.00015  Score=47.84  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.|+++|++||||||+.+.|..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.32  E-value=0.00013  Score=49.91  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987643

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.31  E-value=0.00015  Score=46.99  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|+|||||++++...
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            5789999999999999999864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.31  E-value=0.00014  Score=49.79  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.31  E-value=0.00014  Score=51.27  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .=.++|+|++|+|||||++.|.+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhh
Confidence            34689999999999999998874

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.30  E-value=0.00015  Score=50.18  Aligned_cols=22  Identities=14%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.30  E-value=0.00014  Score=50.11  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5789999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.29  E-value=0.00015  Score=50.54  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.29  E-value=0.00015  Score=50.36  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.29  E-value=0.00011  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988864

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.29  E-value=0.00017  Score=46.95  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|++.|++||||||+.+.|..
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998865

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.28  E-value=0.00016  Score=47.72  Aligned_cols=22  Identities=18%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+|+++|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998875

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.28  E-value=0.00018  Score=50.65  Aligned_cols=25  Identities=20%  Similarity=0.111  Sum_probs=21.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~   35 (170)
                      .++++|++|+|||||+|.+.+...+
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~~  195 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLKL  195 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             eEEEECCCCCcHHHHHHHhcccccc
Confidence            5789999999999999999875443

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.28  E-value=0.00016  Score=47.76  Aligned_cols=24  Identities=13%  Similarity=0.095  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.|+++|++|+||||+++.|...
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456889999999999999988653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.28  E-value=0.00025  Score=47.00  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +...|.++|++|+||||+++.|...
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHh
Confidence            3467899999999999999998764

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.28  E-value=0.00017  Score=47.40  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=19.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998875

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.28  E-value=0.00016  Score=48.20  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999998864

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.27  E-value=0.00018  Score=48.26  Aligned_cols=22  Identities=14%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|.++|++||||||+.+.|..
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.27  E-value=0.00054  Score=42.67  Aligned_cols=24  Identities=8%  Similarity=0.159  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...|++.|++|+|||++++.+...
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCcEEEECCCCccHHHHHHHHHHh
Confidence            457999999999999999887653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.27  E-value=0.00016  Score=49.63  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999988654

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.27  E-value=0.00028  Score=47.32  Aligned_cols=25  Identities=32%  Similarity=0.470  Sum_probs=19.4

Q ss_pred             CCcee-EEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYK-LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~-i~v~G~~~~GKstli~~l~~   31 (170)
                      .++.| |+++|+|||||+|....|..
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence            34445 45689999999999988865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.26  E-value=0.00017  Score=49.92  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999987643

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.25  E-value=0.00016  Score=48.47  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|+|||||++.+.+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999863

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.25  E-value=0.0002  Score=46.51  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|+++|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999998864

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.25  E-value=0.00025  Score=50.20  Aligned_cols=25  Identities=16%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....-+.|+|++|||||||++.+.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~g  112 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQA  112 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHh
Confidence            4456789999999999999998765

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.25  E-value=0.00021  Score=47.79  Aligned_cols=23  Identities=17%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.24  E-value=0.0001  Score=49.78  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=14.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh-cC
Q 030880           11 KLVFLGDQSVGKTSIITRFM-YD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~-~~   32 (170)
                      -+.++|++|+|||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            57899999999999999998 53

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.24  E-value=0.00027  Score=49.81  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -.++++|++|+|||||+|.+. ...
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            457899999999999999998 543

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.23  E-value=0.00012  Score=47.42  Aligned_cols=24  Identities=21%  Similarity=0.110  Sum_probs=16.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +...|++.|.+||||||+.+.|..
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~   27 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHE   27 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.23  E-value=0.00026  Score=46.91  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....|++.|.+||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHH
Confidence            346799999999999999998864

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.23  E-value=0.00032  Score=45.62  Aligned_cols=25  Identities=28%  Similarity=0.238  Sum_probs=21.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+...|+++|.+|+||||+++.|..
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~   35 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLAD   35 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            3456799999999999999998865

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.22  E-value=0.00022  Score=49.30  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999988754

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.21  E-value=0.00025  Score=46.90  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +.|.++|++||||||+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.20  E-value=0.00025  Score=45.25  Aligned_cols=21  Identities=14%  Similarity=0.301  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      +|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.20  E-value=0.00028  Score=46.47  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...|++.|++||||||+.+.|...
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.19  E-value=0.0002  Score=51.60  Aligned_cols=22  Identities=14%  Similarity=0.296  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|||||||++.+.+.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            6899999999999999988763

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.19  E-value=0.00021  Score=51.48  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -++++|++|||||||++.+.+-..
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCchHHHHHHHHhcCCC
Confidence            378999999999999999887543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.18  E-value=0.00028  Score=46.11  Aligned_cols=23  Identities=13%  Similarity=0.263  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.18  E-value=0.00025  Score=47.53  Aligned_cols=23  Identities=17%  Similarity=0.200  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|+++|++||||||+.+.|..
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998864

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.17  E-value=0.00019  Score=51.95  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-+++++|++|+|||||++.|.+-
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999988764

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.16  E-value=0.00027  Score=47.46  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +.|++.|++||||||+.+.|..
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00011  Score=47.44  Aligned_cols=22  Identities=41%  Similarity=0.558  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+.++|++|+|||||++.+..-
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999988763

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.15  E-value=0.00026  Score=48.52  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+..|+++|++||||||+.+.|..
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457899999999999999998864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.14  E-value=0.00026  Score=50.96  Aligned_cols=23  Identities=26%  Similarity=0.296  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999988644

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.14  E-value=0.00025  Score=49.26  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      +++.|++|+|||||++.+.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            999999999999999998763

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.14  E-value=0.0003  Score=45.49  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999988753

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.14  E-value=0.00034  Score=47.68  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...-|.++|+.|||||||++.+.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999998865

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.13  E-value=0.00025  Score=49.67  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|+.|+|||||++.+.+-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4789999999999999998764

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.13  E-value=0.00044  Score=48.44  Aligned_cols=25  Identities=20%  Similarity=0.224  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....-|.|+|++|||||||++.|..
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~   53 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYN   53 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999987653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.12  E-value=0.00034  Score=47.87  Aligned_cols=25  Identities=16%  Similarity=0.295  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...+.|.|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.12  E-value=0.00028  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHCCC
Confidence            47899999999999999988643

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.12  E-value=0.00027  Score=49.87  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.++++|++|||||||++.+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lag  124 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGR  124 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34688999999999999998874

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.12  E-value=0.00029  Score=51.16  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|||||||++.+.+-.
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHHcCC
Confidence            37899999999999999998744

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.12  E-value=0.00037  Score=45.80  Aligned_cols=25  Identities=12%  Similarity=0.109  Sum_probs=21.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ....|.+.|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3467999999999999999988764

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.12  E-value=0.00029  Score=50.84  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCchHHHHHHHHhcCC
Confidence            47899999999999999988643

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.11  E-value=0.00029  Score=48.31  Aligned_cols=21  Identities=19%  Similarity=0.284  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.11  E-value=0.00018  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.398  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      =.++++|++|+|||||++.+.+-
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCchHHHHHHHHHcC
Confidence            35899999999999999988764

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.10  E-value=0.00028  Score=50.40  Aligned_cols=23  Identities=26%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|++|+|||||++.+.+-.
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.10  E-value=0.00019  Score=45.20  Aligned_cols=23  Identities=13%  Similarity=0.401  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+.++|++|+|||+|++.+.+.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999988764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.10  E-value=0.00034  Score=44.96  Aligned_cols=22  Identities=18%  Similarity=0.403  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+.++|++|+|||||+.++...
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999998863

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.09  E-value=0.00031  Score=48.03  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3899999999999999998764

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.09  E-value=0.00046  Score=45.55  Aligned_cols=24  Identities=21%  Similarity=0.245  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...-+.++|++|+|||||++.+..
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~~   44 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446799999999999999998864

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.09  E-value=0.00047  Score=49.84  Aligned_cols=24  Identities=25%  Similarity=0.474  Sum_probs=21.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|++|+|||||++.+.+-.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            478999999999999999998754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.09  E-value=0.00032  Score=50.62  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+.++|++|+|||||++.+.+-.
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEcCCCchHHHHHHHHhcCC
Confidence            37899999999999999888643

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.09  E-value=0.00031  Score=49.52  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .--++++|++|+||||+++.+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag  122 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAH  122 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            34688999999999999998875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.09  E-value=0.00045  Score=49.05  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=20.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ..++-+.++|++|||||||++.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999998774

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.08  E-value=0.00033  Score=50.78  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999988643

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.08  E-value=0.00032  Score=50.85  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCcHHHHHHHHHHcCC
Confidence            37899999999999999988654

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.08  E-value=0.00032  Score=50.89  Aligned_cols=23  Identities=17%  Similarity=0.258  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.++++|++|||||||++.+.+-
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999998763

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.07  E-value=0.00036  Score=46.61  Aligned_cols=22  Identities=18%  Similarity=0.265  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++|++.|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.07  E-value=0.00042  Score=46.80  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+|++.|.+||||||+.+.|..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.06  E-value=0.00038  Score=45.57  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++||||||+.+.|..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.06  E-value=0.00039  Score=45.30  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998865

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.06  E-value=0.00044  Score=47.59  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|++.|.+||||||+.+.|..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999998875

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.04  E-value=0.00034  Score=51.52  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|||||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            4899999999999999998864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.03  E-value=0.00035  Score=52.76  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|++|||||||++.+.+-.
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i  284 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFI  284 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            459999999999999999998644

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.03  E-value=0.00039  Score=45.05  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.03  E-value=0.00047  Score=49.28  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            4688999999999999998865

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.02  E-value=0.00043  Score=44.31  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|++.|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.02  E-value=0.00046  Score=46.74  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .++.|.+.|++|+||||+.+.+..
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.02  E-value=0.0005  Score=48.54  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...-+.++|++|||||||++.|.+
T Consensus        79 ~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           79 IPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999998765

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.02  E-value=0.00053  Score=48.67  Aligned_cols=22  Identities=18%  Similarity=0.356  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|+++|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.02  E-value=0.0005  Score=47.10  Aligned_cols=21  Identities=14%  Similarity=0.215  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030880           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~   30 (170)
                      ..|.++|++||||||+++.|.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999887

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.01  E-value=0.00062  Score=47.46  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ..+.|++.|.+||||||+.+.|.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999886

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.00  E-value=0.0004  Score=49.59  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999988763

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.00  E-value=0.00026  Score=50.83  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCccHHHHHHHHHcCC
Confidence            47899999999999999988643

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.99  E-value=0.00041  Score=50.58  Aligned_cols=21  Identities=24%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+.++|++|+|||||++.+.+
T Consensus        49 ~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHhC
Confidence            478999999999999998876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.98  E-value=0.00016  Score=48.03  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -|++.|++||||||+++.|..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~   22 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSG   22 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478999999999999998865

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.98  E-value=0.00058  Score=45.56  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++.|++.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.97  E-value=0.00049  Score=44.49  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.+|+|+.|+|||||++.+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999998864

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.97  E-value=0.00046  Score=47.87  Aligned_cols=22  Identities=23%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            3899999999999999998764

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.96  E-value=0.00037  Score=44.90  Aligned_cols=24  Identities=38%  Similarity=0.623  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999988653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.96  E-value=0.00048  Score=46.13  Aligned_cols=21  Identities=24%  Similarity=0.415  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++|++|+|||||+..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998874

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.95  E-value=0.00059  Score=43.54  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      +|.+.|.+||||||+.+.|..
T Consensus         9 ~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            688999999999999998854

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.95  E-value=0.00069  Score=43.73  Aligned_cols=23  Identities=17%  Similarity=0.189  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|+++|.+||||||+.+.|..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998865

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.93  E-value=0.00057  Score=45.94  Aligned_cols=23  Identities=17%  Similarity=0.216  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.93  E-value=0.00051  Score=49.53  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .--++++|++|+||||+++.+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag  179 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAH  179 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHHh
Confidence            34688999999999999998875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.90  E-value=0.00066  Score=44.66  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||+|+..+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999988753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.89  E-value=0.00051  Score=51.24  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.++++|+.|+|||||++.+.+-.
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCcc
Confidence            468999999999999999988643

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.89  E-value=0.00091  Score=45.16  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...-|++.|++|+||||+++.|...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4467899999999999999988764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.88  E-value=0.00027  Score=50.92  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|++|+|||||++.+.+-.
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            47899999999999999988644

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.88  E-value=0.00093  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.124  Sum_probs=20.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+.-+++.|+||+|||+|++.+...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456778899999999999988753

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.88  E-value=0.0019  Score=47.94  Aligned_cols=21  Identities=14%  Similarity=0.240  Sum_probs=17.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHh
Q 030880           10 YKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~   30 (170)
                      .=|.|+|+.++|||+|+|.++
T Consensus        68 ~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           68 VAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCchhHHHHHHH
Confidence            456689999999999999664

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.88  E-value=0.00073  Score=42.16  Aligned_cols=26  Identities=8%  Similarity=0.054  Sum_probs=22.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      ....|++.|++|+|||++++.+....
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            34679999999999999999987643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.87  E-value=0.00059  Score=51.15  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .--++++|++|+|||||++.|.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCcccHHHHHHHHHH
Confidence            44688999999999999998865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.87  E-value=0.00069  Score=45.69  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +..-|.+.|+.|+|||||++.+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            3457899999999999999988764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.86  E-value=0.0008  Score=46.05  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +-.+++.|++|+|||+|++.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999988753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.85  E-value=0.00047  Score=48.92  Aligned_cols=23  Identities=17%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|+.|+|||||++.+.+..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            36788999999999999999653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.84  E-value=0.00084  Score=42.20  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      .+++|+.|+|||||+..+.
T Consensus        26 ~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            4789999999999999875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.82  E-value=0.00075  Score=44.85  Aligned_cols=21  Identities=19%  Similarity=0.158  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999987

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.81  E-value=0.00075  Score=46.24  Aligned_cols=23  Identities=17%  Similarity=0.203  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.|+++|++|+||||+.+.|..
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34799999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.81  E-value=0.00068  Score=47.45  Aligned_cols=22  Identities=9%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999988764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.81  E-value=0.0011  Score=44.00  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++|+||||+.+.|..
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999998864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.81  E-value=0.00078  Score=45.48  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++|++|+|||||+..+...
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999874

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.81  E-value=0.00089  Score=46.89  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..|++.|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999875

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.76  E-value=0.00087  Score=48.17  Aligned_cols=24  Identities=13%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =++.++|++|+|||||++.+.+..
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998764

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.75  E-value=0.0012  Score=46.31  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....+++.|++|+|||++++.+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999986654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.71  E-value=0.0016  Score=47.92  Aligned_cols=24  Identities=21%  Similarity=0.313  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..-|+++|++||||||+.++|...
T Consensus       258 ~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          258 PEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            455888999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.71  E-value=0.0014  Score=46.72  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -|+|+|++|+|||+|...|...
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999998764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.71  E-value=0.00098  Score=44.62  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+++.|++|+|||+|++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998865

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.70  E-value=0.001  Score=43.92  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+++.|++|+|||+|++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999988753

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.69  E-value=0.0012  Score=45.79  Aligned_cols=24  Identities=17%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999998754

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.68  E-value=0.001  Score=48.32  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.++++|++|+|||||++.+.+
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34688999999999999998875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.67  E-value=0.0014  Score=43.06  Aligned_cols=24  Identities=13%  Similarity=0.187  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+.|.+.|.+||||||+.+.|..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHH
Confidence            357799999999999999998864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.66  E-value=0.0014  Score=44.80  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.+++.|++|+|||+|++.+..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.66  E-value=0.0012  Score=46.13  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998763

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.65  E-value=0.0018  Score=44.74  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=22.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .....+++.|++|+|||+|++.+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            34567999999999999999988764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.65  E-value=0.0016  Score=49.53  Aligned_cols=24  Identities=13%  Similarity=0.214  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =.++++|+.|+|||||++.+.+-.
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999998744

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.64  E-value=0.0013  Score=43.37  Aligned_cols=25  Identities=20%  Similarity=0.349  Sum_probs=21.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      ...|+++|++|+|||+|...|....
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4568999999999999999998654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.63  E-value=0.0017  Score=45.77  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=19.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +.-++|+|++|||||+|...|..
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCccCHHHHHHHHHH
Confidence            34578899999999999999875

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.63  E-value=0.00098  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.+++.||||+|||+++..+..
T Consensus        59 n~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999887764

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.62  E-value=0.0012  Score=49.50  Aligned_cols=21  Identities=19%  Similarity=0.411  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++|+.|+|||||++.+.+
T Consensus        31 ~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999998875

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.61  E-value=0.0012  Score=48.90  Aligned_cols=24  Identities=13%  Similarity=0.260  Sum_probs=21.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =++.++|++|+|||||++.+.+..
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            368999999999999999988754

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.60  E-value=0.0012  Score=45.81  Aligned_cols=21  Identities=10%  Similarity=0.132  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            478899999999999998875

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.60  E-value=0.0017  Score=42.78  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|.+.|++||||||+.+.|..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999998864

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.60  E-value=0.0012  Score=46.32  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346899999999999999998763

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.60  E-value=0.0012  Score=50.66  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          371 TVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             EEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHhhcc
Confidence            58899999999999999987643

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.59  E-value=0.0013  Score=46.69  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+...
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46899999999999999988753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.59  E-value=0.0014  Score=47.47  Aligned_cols=19  Identities=26%  Similarity=0.400  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      .+++|+.|+|||||++.+.
T Consensus        26 ~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5589999999999999876

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.58  E-value=0.0015  Score=43.55  Aligned_cols=23  Identities=22%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++.|.+.|++||||||+.+.|..
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~   25 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVAS   25 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999988764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.58  E-value=0.0017  Score=49.39  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCC
Confidence            47899999999999999998754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.58  E-value=0.0022  Score=45.02  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||++++.+...
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            47999999999999999988753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.54  E-value=0.0019  Score=49.62  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|++|+|||||++.+.+-.
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999988643

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.54  E-value=0.002  Score=49.77  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .+.++|+.|+|||||++.+.+-.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58899999999999999998743

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.54  E-value=0.0013  Score=44.36  Aligned_cols=24  Identities=25%  Similarity=0.282  Sum_probs=17.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +..-|++.|++|+||||+++.|..
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~   47 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCD   47 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446688999999999999998865

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.52  E-value=0.0017  Score=45.45  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...+++.|++|+|||++++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.51  E-value=0.0015  Score=45.88  Aligned_cols=91  Identities=15%  Similarity=0.069  Sum_probs=49.6

Q ss_pred             EEEEEEEeCCCccccccc-c---hhhhc--CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           57 TVRLQLWDTAGQERFRSL-I---PSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~-~---~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      .+.+.++||+|....... .   ...+.  ..+.+++++|.+..  ...+..+...+.   ..+. .-++.||.|.....
T Consensus       182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~l~~-~giVltk~D~~~~~  255 (296)
T 2px0_A          182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---SVPV-NQYIFTKIDETTSL  255 (296)
T ss_dssp             GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---SSCC-CEEEEECTTTCSCC
T ss_pred             CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---cCCC-CEEEEeCCCcccch
Confidence            357899999996543221 1   11222  36778889987643  233333333222   1122 24556999975332


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880          131 QVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                          ..+.......+.++..++  .|+++
T Consensus       256 ----g~~~~~~~~~~~pi~~i~--~ge~v  278 (296)
T 2px0_A          256 ----GSVFNILAESKIGVGFMT--NGQNV  278 (296)
T ss_dssp             ----HHHHHHHHTCSCCCSEEC--CSSCT
T ss_pred             ----hHHHHHHHHHCcCEEEEE--CCCCC
Confidence                356666777777654443  34554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.51  E-value=0.0015  Score=47.08  Aligned_cols=24  Identities=17%  Similarity=0.331  Sum_probs=20.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||||++.+...
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999988763

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.50  E-value=0.0021  Score=43.48  Aligned_cols=25  Identities=16%  Similarity=0.283  Sum_probs=21.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .....|.++|++|+||||+.+.|..
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999998864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.48  E-value=0.002  Score=43.49  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=20.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+++.++|++||||||+...|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999998864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.48  E-value=0.0021  Score=41.72  Aligned_cols=21  Identities=19%  Similarity=0.340  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++|+|.++||||+|..++...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            689999999999999999865

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.47  E-value=0.0024  Score=42.91  Aligned_cols=28  Identities=18%  Similarity=0.143  Sum_probs=21.4

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +......-|++.|..|+||||+++.|..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~   43 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAE   43 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3344566789999999999999998864

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.47  E-value=0.0018  Score=43.72  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -+++.|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999887754

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.46  E-value=0.0019  Score=46.68  Aligned_cols=22  Identities=23%  Similarity=0.370  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+++.|++|+|||||++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.45  E-value=0.0019  Score=45.63  Aligned_cols=92  Identities=17%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             EEEEEEeCCCcccccccc-------hhhh-----cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCC
Q 030880           58 VRLQLWDTAGQERFRSLI-------PSYI-----RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD  125 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~-------~~~~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D  125 (170)
                      +.+.++|+||........       ...+     ...+.+++|.|.....  +.+.. ...+...  .++ .-++.||.|
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~--~~i-~gvVlTk~D  260 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA--VNV-TGIILTKLD  260 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH--SCC-CEEEEECGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhc--CCC-CEEEEeCCC
Confidence            468899999953221111       1111     2478889999986332  12221 2233222  122 245569999


Q ss_pred             CCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .....    ..+.......+.++..++.  |+.+++
T Consensus       261 ~~~~g----G~~l~~~~~~~~Pi~~i~~--Ge~~~d  290 (306)
T 1vma_A          261 GTAKG----GITLAIARELGIPIKFIGV--GEKAED  290 (306)
T ss_dssp             GCSCT----THHHHHHHHHCCCEEEEEC--SSSGGG
T ss_pred             Cccch----HHHHHHHHHHCCCEEEEeC--CCChhh
Confidence            64332    3366677777877666543  444544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.44  E-value=0.0027  Score=49.06  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .+.++|+.|+|||||++.+.+-.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999998743

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.43  E-value=0.0026  Score=44.99  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-|+|+||+|||||+|...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            35788999999999999999754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.43  E-value=0.0025  Score=48.52  Aligned_cols=24  Identities=21%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      .+.++|+.|+|||||++.+.+-..
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999987543

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.42  E-value=0.0015  Score=46.75  Aligned_cols=20  Identities=20%  Similarity=0.394  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      +++.|++|+||||+++.+.+
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998766

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.41  E-value=0.0022  Score=45.50  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...+++.|++|+|||+|++.+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999998753

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.41  E-value=0.0019  Score=46.14  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++.|++|+||||+++.+...
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988764

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.40  E-value=0.0014  Score=50.46  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =.++++|++|+|||||++.+.+-.
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            368999999999999999887643

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.40  E-value=0.0027  Score=49.02  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      .+.++|+.|+|||||++.+.+-..
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            478999999999999999987543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.39  E-value=0.002  Score=45.80  Aligned_cols=23  Identities=13%  Similarity=0.333  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            56999999999999999998764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.39  E-value=0.003  Score=48.07  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      .+.++|+.|+|||||++.+.+-..
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999987543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.39  E-value=0.0059  Score=40.01  Aligned_cols=86  Identities=8%  Similarity=0.063  Sum_probs=55.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc--CCCCeEEEEEeCCCCCCccccCH
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER--GSDVIIVLVGNKTDLVEKRQVSI  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~  134 (170)
                      .+.+.++|+|+..  .......+..+|.++++...+...  ..+...+..+....  .++.++.+|.|+.+....   ..
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~  147 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---ML  147 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EE
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HH
Confidence            3678999999754  344556677899999999876443  55666656554433  245677899999985322   12


Q ss_pred             HHHHHHHhhcCCeEE
Q 030880          135 EEGEAKSRELNVMFI  149 (170)
Q Consensus       135 ~~~~~~~~~~~~~~~  149 (170)
                      .+..+..++++.+++
T Consensus       148 ~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A          148 NVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHHcCCcee
Confidence            345555555665544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.38  E-value=0.002  Score=46.38  Aligned_cols=23  Identities=17%  Similarity=0.182  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+.++|++|+|||||+..+....
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998653

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=96.37  E-value=0.0012  Score=50.66  Aligned_cols=23  Identities=22%  Similarity=0.288  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|++|+|||||++.+.+-.
T Consensus       369 ~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             EEEEECSTTSSHHHHHTTTTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            58899999999999999877543

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.35  E-value=0.0026  Score=42.07  Aligned_cols=19  Identities=21%  Similarity=0.571  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      .+|+|+.|+||||++..+.
T Consensus        26 ~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           26 NLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            5788999999999999775

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=96.34  E-value=0.0026  Score=46.61  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=20.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ...+|++++|..+|||||++.++.
T Consensus        38 ~~~~klLLLG~geSGKSTi~KQmk   61 (402)
T 1azs_C           38 RATHRLLLLGAGESGKSTIVKQMR   61 (402)
T ss_dssp             TTEEEEEEEESTTSSHHHHHHHHH
T ss_pred             hccceEEEecCCCCchhhHHHHHH
Confidence            457999999999999999998553

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=96.31  E-value=0.0017  Score=50.01  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++++|++|+|||||++.+.+-
T Consensus       371 ~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             EEEEECSSSSSHHHHHHTTTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988764

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.31  E-value=0.002  Score=46.45  Aligned_cols=24  Identities=17%  Similarity=0.252  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||+|++.+...
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~   67 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRR   67 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.011  Score=39.86  Aligned_cols=23  Identities=17%  Similarity=0.223  Sum_probs=19.0

Q ss_pred             eEEEE--cCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFL--GDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~--G~~~~GKstli~~l~~~~   33 (170)
                      ||+|+  |+++.||++|++++.+..
T Consensus        29 kilvl~~~~~~~~~~~~~~~lf~~~   53 (233)
T 3uc9_A           29 KILVLSDHPHNFLKTQFLQDLFHCS   53 (233)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHCCC
T ss_pred             ceEEEecCcccccHHHHHHHHhccc
Confidence            45555  999999999999999864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.31  E-value=0.0024  Score=47.16  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      --+++.||||+|||+|++.+.+
T Consensus       207 rGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999875

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.30  E-value=0.0029  Score=45.59  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ....+++.|++|+|||++++.+...
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4568999999999999999988753

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.28  E-value=0.0028  Score=44.77  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .-.+++.|++|+|||+|+..+..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998765

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.28  E-value=0.0032  Score=42.65  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...|++.|..|+||||+++.|...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~   25 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            356889999999999999988753

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.28  E-value=0.0032  Score=44.76  Aligned_cols=24  Identities=25%  Similarity=0.516  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ...+++.|++|+|||+|++.+...
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~   78 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYE   78 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            346999999999999999998654

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.27  E-value=0.0033  Score=40.48  Aligned_cols=23  Identities=13%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-+++.|++|+||||+.-.|...
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45899999999999999999874

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.27  E-value=0.0026  Score=45.75  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+...
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999988753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.27  E-value=0.0031  Score=45.65  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ....+++.|++|+|||++++.+...
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~   95 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKH   95 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0033  Score=46.52  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +-.|++.||||+|||.|++.+.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999998753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.25  E-value=0.0027  Score=45.07  Aligned_cols=22  Identities=32%  Similarity=0.626  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++|.|++|+|||||++.+...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            5788999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.24  E-value=0.0021  Score=44.18  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +...|++.|..|+||||+++.|...
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~   47 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQL   47 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3467899999999999999988653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.0038  Score=48.24  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~   35 (170)
                      +.++|+.|+|||||++.+.+-..+
T Consensus       381 v~iiG~NGsGKSTLlk~l~Gl~~p  404 (608)
T 3j16_B          381 LVMMGENGTGKTTLIKLLAGALKP  404 (608)
T ss_dssp             EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred             EEEECCCCCcHHHHHHHHhcCCCC
Confidence            689999999999999999875433

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.23  E-value=0.0027  Score=45.26  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++.|++|+|||++++.+...
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4899999999999999988754

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0028  Score=46.90  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++--|++.||||+|||+|++.+.+.
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            3457999999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.23  E-value=0.0047  Score=44.41  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+++++|++|+||||+.+.|..
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHH
Confidence            45799999999999999986654

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.23  E-value=0.0011  Score=45.52  Aligned_cols=21  Identities=19%  Similarity=0.311  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+++.|++|+|||+|++.+..
T Consensus        46 ~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCCBCSSCSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.21  E-value=0.0026  Score=47.54  Aligned_cols=25  Identities=32%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..-+++++|++|+|||++++.+...
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999987653

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.19  E-value=0.0015  Score=45.72  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=16.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..-|.|.|++||||||+.+.|..
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34699999999999999998764

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.16  E-value=0.003  Score=44.98  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++|.|++|+|||+|++.+...
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~~   53 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGINE   53 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            5788999999999999988753

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.16  E-value=0.0034  Score=43.12  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=21.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      ...+++.|++|+|||+|++.+....
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~   53 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLS   53 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhc
Confidence            4579999999999999999987653

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.15  E-value=0.0033  Score=45.39  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+...
T Consensus        46 ~~vll~G~~G~GKT~la~~l~~~   68 (384)
T 2qby_B           46 FSNLFLGLTGTGKTFVSKYIFNE   68 (384)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999988753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-46
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	2e-43
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-43
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-42
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-42
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	1e-41
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-41
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	3e-39
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	6e-39
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	7e-38
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-37
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	3e-36
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	7e-36
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-36
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-35
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-32
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-31
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	1e-31
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-31
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	6e-31
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-30
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-30
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-30
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-29
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-29
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	8e-29
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-28
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	3e-28
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-27
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-27
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-27
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	7e-26
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-25
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-25
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-25
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-24
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-24
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-24
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-23
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-21
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	3e-21
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-20
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-20
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	6e-20
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-19
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	4e-19
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	8e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-17
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-17
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	7e-17
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-16
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	6e-16
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	8e-15
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-13
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	1e-08
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	7e-05
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	8e-05
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.001
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	0.001
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	0.002

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  146 bits (370), Expect = 4e-46
 Identities = 65/151 (43%), Positives = 103/151 (68%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +GD  VGKT ++ RF  D F++T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+ + +SF N   WI  +     +DV  +++GNK D+ +K
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVS E GE  + +  + F+ETSAKA  N++
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVE 157

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  139 bits (351), Expect = 2e-43
 Identities = 127/151 (84%), Positives = 142/151 (94%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KLVFLG+QSVGKTS+ITRFMYD FDNTYQATIGIDFLSKTMYLEDRT+RLQLWDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRSLIPSYIRDS+ AVVVYD+ +  SF  T+KWID+VRTERGSDVII+LVGNKTDL +K
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           RQVSIEEGE K++ELNVMFIETSAKAG+N+K
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVK 151

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  139 bits (350), Expect = 4e-43
 Identities = 62/151 (41%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ +GD  VGK+ ++ RF+ DKF+ ++  TIGIDF  KT+ +  + V+LQ+WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  +Y R +   ++VYD+   ++F N  +W   V      +  ++LVGNK+D+ E 
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ET 121

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ ++GEA ++EL + FIE+SAK   N+ 
Sbjct: 122 RVVTADQGEALAKELGIPFIESSAKNDDNVN 152

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 2e-42
 Identities = 63/151 (41%), Positives = 95/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +G+  VGKT ++ RF    F     ATIG+DF+ KT+ +    V+LQ+WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++  ++ YD+   +SF    +W+ E+     + VI VLVGNK DL E+
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+VS +  E  S   ++ ++ETSAK   N++
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVE 156

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (343), Expect = 4e-42
 Identities = 63/152 (41%), Positives = 98/152 (64%), Gaps = 1/152 (0%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +K++ +GD  VGKT ++ RF    F   T+ +T+GIDF +K + ++   V+LQ+WDTAGQ
Sbjct: 7   FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           ERFRS+  +Y RD+   +++YDV ++ SF N   W+ E+      DV ++L+GNK D   
Sbjct: 67  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 126

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +R V  E+GE  ++E  + F+ETSAK G N+ 
Sbjct: 127 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVD 158

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  136 bits (342), Expect = 1e-41
 Identities = 63/151 (41%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +KL+ +G+  VGK+ ++ RF  D + N Y +TIG+DF  KT+ L+ +TV+LQ+WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R S   ++VYDV  ++SF     W+ E+     S V+ +LVGNK DL +K
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +  +  +    + F+ETSA    N++
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVE 157

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  134 bits (339), Expect = 2e-41
 Identities = 57/151 (37%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V +GD  VGK+++++RF  ++F+   ++TIG++F ++++ ++ +T++ Q+WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R +  +Y R +  A++VYD+A   ++ N  +W+ E+R    S+++I+LVGNK+DL   
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  +E  A + + N+ FIETSA    N++
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVE 155

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 3e-39
 Identities = 55/151 (36%), Positives = 97/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   KF      TIG++F ++ + +  + ++LQ+WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFR++  SY R ++ A++VYD+  R ++ + S W+ + R     + +I+L+GNK DL  +
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V+ EE +  + E  ++F+E SAK G N++
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVE 155

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  128 bits (322), Expect = 6e-39
 Identities = 58/151 (38%), Positives = 95/151 (62%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           R+R++  +Y R +   +++YD+ + +SF     W  +++T    +  ++LVGNK D+ ++
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VS E G   +  L   F E SAK   N+K
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVK 156

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (316), Expect = 7e-38
 Identities = 58/155 (37%), Positives = 92/155 (59%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
            L   K++ +G+  VGK+S++ RF  D FD    ATIG+DF  KT+ ++    +L +WDT
Sbjct: 4   VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDT 63

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AGQERFR+L PSY R +   ++VYDV  R +F+    W++E+ T    + I+ ++     
Sbjct: 64  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKI 123

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             E R+V   EG   +R+ +++FIE SAK    ++
Sbjct: 124 DKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQ 158

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 1e-37
 Identities = 59/151 (39%), Positives = 105/151 (69%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +GD  VGK+ ++ +F   +F   +  TIG++F ++ + ++ + ++LQ+WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            FRS+  SY R ++ A++VYD+  R++F + + W+++ R    S+++I+L+GNK+DL  +
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R V  EEGEA +RE  ++F+ETSAK   N++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVE 154

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 3e-36
 Identities = 57/151 (37%), Positives = 98/151 (64%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K + +G+   GK+ ++ +F+  KF +    TIG++F SK + +  + V+LQ+WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RFRS+  SY R ++ A++VYD+ SR+++   + W+ + R     +++I+L GNK DL   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R+V+  E    ++E  +MF+ETSA  G N++
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVE 156

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 7e-36
 Identities = 53/153 (34%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YK+V LG   VGK+++  +F+   F   Y  TI  DF  K + ++     L++ DTAG 
Sbjct: 3   EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLV 127
           E+F S+   YI++    ++VY + ++QSF +     D++   +    V ++LVGNK DL 
Sbjct: 62  EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE 121

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R+VS  EG A + E    F+ETSAK+   + 
Sbjct: 122 SEREVSSSEGRALAEEWGCPFMETSAKSKTMVD 154

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (303), Expect = 8e-36
 Identities = 60/162 (37%), Positives = 96/162 (59%), Gaps = 11/162 (6%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR----------TVR 59
            KL+ LGD  VGKT+ + R+  +KF+  +  T+GIDF  K +    +           V 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 60  LQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIV 118
           LQLWDTAGQERFRSL  ++ RD+   ++++D+ S+QSFLN   W+ +++     +   IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L+GNK DL ++R+V+  +    + +  + + ETSA  G N++
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVE 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 9e-35
 Identities = 62/154 (40%), Positives = 104/154 (67%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + ++KLV LG+ +VGK+S++ RF+  +F    ++TIG  FL++T+ L+D TV+ ++WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
           GQER+ SL P Y R +  A+VVYD+ + +SF     W+ E++ +   +++I L GNK DL
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             KR V  +E ++ + + +++F+ETSAK   N+ 
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVN 157

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 3e-32
 Identities = 61/151 (40%), Positives = 96/151 (63%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K+V LG+  VGKTS++ R+  +KF++ +  T+G  FL+K + +  + V L +WDTAGQE
Sbjct: 4   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
           RF +L P Y RDS+ A++VYD+    SF     W+ E+R   G+++ + +VGNK DL ++
Sbjct: 64  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 123

Query: 130 RQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           R VSI+E E+ +  +      TSAK    I+
Sbjct: 124 RHVSIQEAESYAESVGAKHYHTSAKQNKGIE 154

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  110 bits (274), Expect = 1e-31
 Identities = 53/156 (33%), Positives = 95/156 (60%), Gaps = 2/156 (1%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           +LA +K++ +G   VGK+++  +FMYD+F   Y+ T   D   K + L+   V++ + DT
Sbjct: 1   SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQIDILDT 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKT 124
           AGQE + ++  +Y R     + V+ +   +SF  T+ + +++   +   +V  +LVGNK+
Sbjct: 60  AGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKS 119

Query: 125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           DL +KRQVS+EE + ++ + NV ++ETSAK   N+ 
Sbjct: 120 DLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVD 155

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (274), Expect = 1e-31
 Identities = 62/156 (39%), Positives = 92/156 (58%), Gaps = 6/156 (3%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ LGD  VGK+S++ R++ +KFD     TIG++FL+K + ++   V +Q+WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVR----TERGSDVIIVLVGNKTD 125
           RFRSL   + R S   ++ + V   QSF N S W  E       +       V++GNK D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 126 LVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIK 160
           + E RQVS EE +A  R+  +  + ETSAK   N+ 
Sbjct: 127 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVA 161

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 3e-31
 Identities = 59/155 (38%), Positives = 93/155 (60%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           AL + K+  LGD  VGK+SI+ RF+ D FD     TIG  F++KT+  ++   +  +WDT
Sbjct: 1   ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDT 60

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG ERFR+L P Y R S+ A++VYD+   ++F     W+ E+R      +++ + GNK D
Sbjct: 61  AGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCD 120

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L + R+V   + +  +  ++ +F+ETSAK   NI 
Sbjct: 121 LTDVREVMERDAKDYADSIHAIFVETSAKNAININ 155

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (270), Expect = 6e-31
 Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 14/164 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  +KF + Y  T+  D  + T+ +      L L+DTAGQE
Sbjct: 4   IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            +  L P     + V +V + V S  SF N  +      T        +LVG + DL + 
Sbjct: 63  DYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 122

Query: 130 RQV------------SIEEGEAKSRELNVM-FIETSAKAGFNIK 160
                          + E  E  +R+L  + ++E SA     +K
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLK 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 2e-30
 Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 2/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           +K++ +GD +VGKT +  RF   +F +  +ATIG+DF  + + ++   +++QLWDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 70  RFRSL-IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLV 127
           RFR   +  Y R+    V VYD+ +  SF +   WI+E +    + D+  +LVGNK DL 
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNI 159
              QV  +  +  +   ++   ETSAK   + 
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDN 154

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (264), Expect = 3e-30
 Identities = 45/155 (29%), Positives = 85/155 (54%), Gaps = 3/155 (1%)

Query: 7   LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 66
           + +YKLV +G   VGK+++  + + + F + Y  TI  D   K + ++  T  L + DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTA 59

Query: 67  GQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTD 125
           GQE + ++   Y+R     + V+ + + +SF +  ++ ++++  +   DV +VLVGNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  R V   + +  +R   + +IETSAK    ++
Sbjct: 120 -LAARTVESRQAQDLARSYGIPYIETSAKTRQGVE 153

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (263), Expect = 6e-30
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 14/164 (8%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K V +GD +VGKT ++  +  + F   Y  T+  D  S  + ++ + V L LWDTAGQE
Sbjct: 6   IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK 129
            +  L P     + V+++ + + S  SF N              +  I+LVG K DL + 
Sbjct: 65  DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124

Query: 130 RQVSIE------------EGEAKSRELN-VMFIETSAKAGFNIK 160
           +    +            +G A ++E+  V ++E SA     +K
Sbjct: 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLK 168

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 2e-29
 Identities = 55/153 (35%), Positives = 88/153 (57%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           KY+LV +G   VGK+++  +F+   F   Y  TI  D  +K   ++DR  RL + DTAGQ
Sbjct: 5   KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQ 63

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ V  R SF    K+  + +R +   +  ++L+GNK DL 
Sbjct: 64  EEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLD 123

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +RQV+ EEG+  +R+L V ++E SAK   N+ 
Sbjct: 124 HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVD 156

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 2e-29
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 20/186 (10%)

Query: 1   MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL 60
           MA        K V +GD +VGKT ++  +  D F   Y  T+  D  + ++ +  +   L
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 59

Query: 61  QLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV 120
            L+DTAGQE +  L P     + V ++ + V +  SF N  +       E   +V  +L+
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 121 GNKTDLVEKRQ------------VSIEEGEAKSRELNVM-FIETSAKAGFNIK------V 161
           G + DL +  +            + +E+G+  ++E+    ++E SA     +K      +
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 162 CLMLHP 167
             +L P
Sbjct: 180 IAILTP 185

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  102 bits (254), Expect = 8e-29
 Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 3/153 (1%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KLV LG+ +VGK+SI+ RF+ + F    + TIG  FL++ + + + TV+ ++WDTAGQER
Sbjct: 5   KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL---V 127
           F SL P Y R++  A+VVYDV   QSF+    W+ E+  +   D+II LVGNK D+    
Sbjct: 65  FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEG 124

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R+V+ EEGE  + E  ++F ETSAK G N+ 
Sbjct: 125 GERKVAREEGEKLAEEKGLLFFETSAKTGENVN 157

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 2e-28
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
            +KLV +G   VGK+++  +F+   F + Y      D  +K   ++    RL + DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYD-PTIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
           E F ++   Y+R     ++V+ +  RQSF    K   ++   +  D   +VLVGNK DL 
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +RQV   E  A     +V + E SAK   N+ 
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVD 157

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 3e-28
 Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 14/165 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KLV +GD + GKT ++     D+F   Y  T+  +     + ++ + V L LWDTAG 
Sbjct: 2   RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGL 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E +  L P    D+ V ++ + + S  S  N  +           +V I+LVGNK DL  
Sbjct: 61  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 120

Query: 129 KRQV------------SIEEGEAKSRELNVM-FIETSAKAGFNIK 160
                             EEG   +  +    ++E SAK    ++
Sbjct: 121 DEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVR 165

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  100 bits (248), Expect = 1e-27
 Identities = 58/155 (37%), Positives = 92/155 (59%), Gaps = 4/155 (2%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LGD  VGKTS++ +++  KF N Y+ATIG DFL+K + ++DR V +Q+WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS----DVIIVLVGNKTD 125
           RF+SL  ++ R +   V+V+DV +  +F     W DE   +       +   V++GNK D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           L  ++  +         + N+ + ETSAK   N++
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 157

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 2e-27
 Identities = 49/154 (31%), Positives = 88/154 (57%), Gaps = 3/154 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +YKLV LG   VGK+++  +F+   F   Y  TI  D   K + ++ +   L++ DTAG 
Sbjct: 3   EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGT 61

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWID-EVRTERGSDVIIVLVGNKTDLV 127
           E+F ++   Y+++     +VY + ++ +F +     +  +R +   DV ++LVGNK DL 
Sbjct: 62  EQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE 121

Query: 128 EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNIK 160
           ++R V  E+G+  +R+  N  F+E+SAK+  N+ 
Sbjct: 122 DERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.0 bits (245), Expect = 2e-27
 Identities = 39/164 (23%), Positives = 76/164 (46%), Gaps = 14/164 (8%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           K K+V +GD   GKT+++  F  D F   Y  T+  +  + +  ++ + + L LWDT+G 
Sbjct: 2   KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGS 60

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
             + ++ P    DS   ++ +D++  ++  +  K       E   +  ++LVG K+DL  
Sbjct: 61  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 120

Query: 129 ------------KRQVSIEEGEAKSRELNVM-FIETSAKAGFNI 159
                       +  VS ++G   ++++    +IE SA    N 
Sbjct: 121 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 164

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.8 bits (234), Expect = 7e-26
 Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V +G+ +VGK+S+I R+    F   Y+ TIG+DFL + + + D  VRL LWDTAGQE 
Sbjct: 4   KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
           F ++  +Y R +   V+V+    R+SF   S W ++V  E G D+   LV NK DL++  
Sbjct: 64  FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-DIPTALVQNKIDLLDDS 122

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  EE E  ++ L + F  TS K   N+ 
Sbjct: 123 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVS 152

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 94.7 bits (234), Expect = 1e-25
 Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 3/153 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YKLV +GD  VGK+++  +F    F   Y  TI  D   K   ++++   L + DTAGQE
Sbjct: 5   YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI-EDSYLKHTEIDNQWAILDVLDTAGQE 63

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEV-RTERGSDVIIVLVGNKTDLVE 128
            F ++   Y+R     ++VY V  + SF +  ++   + R +      ++LV NK DL+ 
Sbjct: 64  EFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 123

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAG-FNIK 160
            R+V+ ++G+  + + N+ +IETSAK    N+ 
Sbjct: 124 LRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 156

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 4e-25
 Identities = 34/156 (21%), Positives = 69/156 (44%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+I+ +    +   T      + F  +T+    + V+  +WD  GQ
Sbjct: 12  EMRILMLGLDAAGKTTILYKLKLGQSVTTIP---TVGFNVETVT--YKNVKFNVWDVGGQ 66

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDL- 126
           ++ R L   Y   +   + V D A R       + +  +  +R   D II++  NK DL 
Sbjct: 67  DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 126

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             ++  ++  + G  + R+ N     + A +G  + 
Sbjct: 127 DAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 92.8 bits (229), Expect = 4e-25
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 9/154 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           +++ +G  + GKT+I+ +    +       T           +E + +   +WD  GQ++
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLV----GNKTDL 126
            R L   Y +++   + V D   R+      + +  +  E      ++LV     +  + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           +   +++ + G    R  N     T A +G  + 
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.4 bits (228), Expect = 7e-25
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 7/158 (4%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRL-QLWDTAGQ 68
            K++ LGD  VGKTS++ R++ DK+   Y+ATIG DFL+K + ++   V   Q+WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW----IDEVRTERGSDVIIVLVGNKT 124
           ERF+SL  ++ R +   V+VYDV +  SF N   W    +             V++GNK 
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 125 DLVEKRQVSIEEGEAKSREL--NVMFIETSAKAGFNIK 160
           D  E +++  E+   +  +   ++    TSAK   N+ 
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD 160

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.0 bits (227), Expect = 1e-24
 Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 3/152 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++KLV +GD   GKT+ + R +  +F+  Y AT+G++      +     ++  +WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE 128
           E+F  L   Y   +  A++++DV SR ++ N   W  ++      ++ IVL GNK D+ +
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD 121

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           ++  +        R+ N+ + + SAK+ +N +
Sbjct: 122 RKVKAKSIVFH--RKKNLQYYDISAKSNYNFE 151

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 92.0 bits (227), Expect = 2e-24
 Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T   TIG +       L  + ++L +WD  GQ
Sbjct: 17  ELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNV----ETLSYKNLKLNVWDLGGQ 71

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL- 126
              R     Y  D++  + V D   +      SK +  +  E    D  +++  NK D  
Sbjct: 72  TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQP 131

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +   +VS E    + ++ +   + +SA  G  I 
Sbjct: 132 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 167

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.4 bits (223), Expect = 4e-24
 Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           Y++   G   VGK+S++ RF+   F  +Y  T+   +  + +  +     LQ+ DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSH 61

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLV 127
           +F ++    I      ++VY + SRQS        +++   +G    + I+LVGNK D  
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             R+V   E EA +R     F+ETSAK   N+K
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVK 154

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 1e-23
 Identities = 53/155 (34%), Positives = 78/155 (50%), Gaps = 4/155 (2%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A+ KL   G   VGK++++ RF+  +F   Y  T+   +      ++D  V +++ DTAG
Sbjct: 1   AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAG 59

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDL 126
           QE        ++R     V+VYD+  R SF       + +   +   +V ++LVGNK DL
Sbjct: 60  QEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 118

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAG-FNIK 160
              RQVS EEGE  + EL   F E SA  G  NI 
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNIT 153

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 1e-21
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           ++K++ +G  + GKT+I+ +F  ++  +T               +     R  +WD  GQ
Sbjct: 15  EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE-----EIVINNTRFLMWDIGGQ 69

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDL- 126
           E  RS   +Y  ++   +VV D   R+    T + + ++          +++  NK D+ 
Sbjct: 70  ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
             +   ++S        ++         A  G  + 
Sbjct: 130 ECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.9 bits (203), Expect = 3e-21
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             K+  LG +SVGK+S+  +F+  +F ++Y  TI  +  +K + +  +   LQL DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTI-ENTFTKLITVNGQEYHLQLVDTAGQ 62

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLV 127
           + +     +Y  D +  ++VY V S +SF        ++        + I+LVGNK DL 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 128 EKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +R +S EEG+A +   N  F+E+SAK      
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAV 155

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 82.0 bits (201), Expect = 7e-21
 Identities = 37/156 (23%), Positives = 63/156 (40%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L+ LG  + GKT+I+ +F  +  D     TI          LE R  +L +WD  GQ
Sbjct: 2   ELRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQ 56

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
           +  RS   +Y   +   + V D A RQ   +  + +   +  ER +   +++  NK DL 
Sbjct: 57  KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP 116

Query: 128 EKRQVSI---EEGEAKSRELNVMFIETSAKAGFNIK 160
                +           R  +      SA  G ++ 
Sbjct: 117 GALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 152

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 81.9 bits (201), Expect = 1e-20
 Identities = 35/156 (22%), Positives = 67/156 (42%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG  + GKT+++ +   +   +    T G +  S       +  +L +WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITP-TQGFNIKSVQS----QGFKLNVWDIGGQ 70

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLV 127
            + R    SY  ++ + + V D A R+ F  T + + E+  E + S V +++  NK DL+
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 128 EKRQVSI---EEGEAKSRELNVMFIETSAKAGFNIK 160
                S           R+        SA  G  ++
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 2e-20
 Identities = 45/152 (29%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
           YK++ LG   VGK+++   F   +               +++ ++     L ++D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKW-IDEVRTERGSDVIIVLVGNKTDLVE 128
             R L    +      V+VY V  + SF   S+  +   R  +  DV I+LVGNK+DLV 
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            R+VS++EG A +   +  FIETSA    N++
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQ 151

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 6e-20
 Identities = 35/159 (22%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +L  +G Q  GKT+ +      +F+     T+G +       +    V ++LWD  GQ
Sbjct: 2   EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDL- 126
            RFRS+   Y R  S  V + D A ++    +   +  +  + +   + ++++GNK DL 
Sbjct: 58  PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 117

Query: 127 --VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCL 163
             ++++++  +   +  ++  +     S K   NI + L
Sbjct: 118 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.2 bits (191), Expect = 2e-19
 Identities = 31/161 (19%), Positives = 55/161 (34%), Gaps = 16/161 (9%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           KL+FLG  + GKT+++     D+      AT+   +   +  L    ++   +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS-DVIIVLVGNKTDLVEK 129
            R L   Y  + +  V + D A  + F      +D +       DV  V++GNK D    
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 130 RQVS----------IEEGEAKSRELNVMFIETSAKAGFNIK 160
              +              +    +  V     S        
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYL 157

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 4e-19
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 3/155 (1%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
            Y++V +G+Q VGK+++   F       ++    +G D   +T+ ++  +  + L D   
Sbjct: 3   YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE 62

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK--WIDEVRTERGSDVIIVLVGNKTD 125
            +     +  +      A ++    + ++    +    I   R  +  D+ I+LVGNK+D
Sbjct: 63  NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 126 LVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
           LV  R+VS+ EG A +   +  FIETSA    N+K
Sbjct: 123 LVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 157

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 8e-19
 Identities = 31/158 (19%), Positives = 60/158 (37%), Gaps = 7/158 (4%)

Query: 6   ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDT 65
           ++ + +L  LGD   GK+S+I RF+   +          +   K M ++ +T  + + + 
Sbjct: 2   SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLE--KTESEQYKKEMLVDGQTHLVLIREE 59

Query: 66  AGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTD 125
           AG    +     +         + D  S Q+       +  +R E    + + LVG +  
Sbjct: 60  AGAPDAK--FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 117

Query: 126 LVEK--RQVSIEEGEAKSREL-NVMFIETSAKAGFNIK 160
           +     R V      A   ++    + ET A  G N+ 
Sbjct: 118 ISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD 155

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 9/156 (5%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + +++ LG    GKT+I+ R    +   T               +  + ++ Q+WD  G 
Sbjct: 5   EMRILILGLDGAGKTTILYRLQVGEVVTTIP-----TIGFNVETVTYKNLKFQVWDLGGL 59

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD-VIIVLVGNKTDLV 127
              R     Y  ++   + V D   R     +   +  +  E      I+V+  NK D+ 
Sbjct: 60  TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME 119

Query: 128 EKRQVS---IEEGEAKSRELNVMFIETSAKAGFNIK 160
           +    S      G    ++      +TSA  G  + 
Sbjct: 120 QAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 155

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.6 bits (177), Expect = 4e-17
 Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 10  YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69
            K++ LG    GK++ + +    +  +    T GI         E + V  ++ D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQR 55

Query: 70  RFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-----------VRTERGSDVIIV 118
             R          +  + +   +     L   +  +            V     S+V I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 119 LVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           L  NKTDL+E++   +   +               +
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ 151

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.3 bits (176), Expect = 7e-17
 Identities = 24/190 (12%), Positives = 53/190 (27%), Gaps = 43/190 (22%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++ I +            T GI      +         ++ D  GQ
Sbjct: 2   ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVIF----RMVDVGGQ 55

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQS-----------FLNTSKWIDEVRTERGSDVII 117
              R        + +  + +  ++                 + + +   +      +  +
Sbjct: 56  RSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 115

Query: 118 VLVGNKTDLVEKRQVSIEEGE--------------------------AKSRELNVMFIET 151
           +L  NK DL+E++ +     +                              +  +    T
Sbjct: 116 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFT 175

Query: 152 SAKAGFNIKV 161
            A    NI+ 
Sbjct: 176 CATDTENIRF 185

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.6 bits (172), Expect = 4e-16
 Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 19/140 (13%)

Query: 8   AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG 67
           A ++L+ LG    GK++I+ +            T GI         +   V   ++D  G
Sbjct: 5   ATHRLLLLGAGESGKSTIVKQM----RILHVVLTSGIFETK----FQVDKVNFHMFDVGG 56

Query: 68  QERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWI-----------DEVRTERGSDVI 116
           Q   R        D +  + V   +S    +                           + 
Sbjct: 57  QRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTIS 116

Query: 117 IVLVGNKTDLVEKRQVSIEE 136
           ++L  NK DL+ ++ ++ + 
Sbjct: 117 VILFLNKQDLLAEKVLAGKS 136

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 21/168 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             KLVFLG  + GKT+++     D+                +  L    +    +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLH-----PTSEELTIAGMTFTTFDLGGH 67

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDE-VRTERGSDVIIVLVGNKTDLV 127
            + R +  +Y+   +  V + D A  +  L + + +D  +  E  ++V I+++GNK D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 128 EKRQVS---------------IEEGEAKSRELNVMFIETSAKAGFNIK 160
           E                          +     +     S        
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 175

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.9 bits (162), Expect = 8e-15
 Identities = 24/157 (15%), Positives = 48/157 (30%), Gaps = 20/157 (12%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           + KL+ LG    GK++I+ +              GI       +   + +  +++D  GQ
Sbjct: 2   EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQ 52

Query: 69  ERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK-----------WIDEVRTERGSDVII 117
              R          +  +    ++     L   +           +      +  +D  I
Sbjct: 53  RSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 112

Query: 118 VLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK 154
           +L  NK DL E++                   E +A 
Sbjct: 113 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAA 149

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.7 bits (151), Expect = 3e-13
 Identities = 20/162 (12%), Positives = 53/162 (32%), Gaps = 13/162 (8%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
            ++F+G    GKT +  R +  ++ +T   +I        +          +     +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSK----WIDEVRTERGSDVIIVLVGNKTDL 126
              L+  +   +   V V D A+ Q  +         +        +   +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 127 VEKRQVSIEEGE--------AKSRELNVMFIETSAKAGFNIK 160
              +   + + +          +R      +++S+ A   + 
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLG 162

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 1e-08
 Identities = 25/170 (14%), Positives = 60/170 (35%), Gaps = 25/170 (14%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
           +  ++  G Q+ GKTS++T    D    T  +             +     + L D  G 
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQE------PLSAADYDGSGVTLVDFPGH 56

Query: 69  ERFRSLIPSYIRDSSVA-----VVVYDVASRQSFLNTSKWIDEVRTE----RGSDVIIVL 119
            + R  +  Y++  +        +V      +    T++++ ++ +       + + I++
Sbjct: 57  VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILI 116

Query: 120 VGNKTDLVEKRQVSIEEGEAKSRELN---------VMFIETSAKAGFNIK 160
             NK++L   R  S  + +A   E+          +  +E         +
Sbjct: 117 ACNKSELFTARPPSKIK-DALESEIQKVIERRKKSLNEVERKINEEDYAE 165

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.3 bits (90), Expect = 7e-05
 Identities = 29/170 (17%), Positives = 57/170 (33%), Gaps = 24/170 (14%)

Query: 13  VFLGDQSVGKTSIITRF------------------MYDKFDNTYQATIGIDFLSKTMYLE 54
           +F G  +VGK+++I R                     +  ++      G  F+       
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEV 63

Query: 55  DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSD 114
              ++ ++            +   + D   A  +     ++  +       +   E    
Sbjct: 64  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 123

Query: 115 VIIVLVGNKTDLVEKRQVSI----EEGEAKSRELNVMFIETSAKAGFNIK 160
            I+    NK D ++  Q  I    E+ E    E++ +FI  SAK G NI+
Sbjct: 124 TIV--AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIE 171

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 39.0 bits (89), Expect = 8e-05
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 1/150 (0%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 70
           K+V  G  + GK+S++      +         G        ++    + L + DTAG   
Sbjct: 3   KVVIAGRPNAGKSSLLNALAGREAAIVTD-IAGTTRDVLREHIHIDGMPLHIIDTAGLRE 61

Query: 71  FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR 130
               +     + +   +            T+    +        +  +       +V  +
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 131 QVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
                E    S       I  SA+ G  + 
Sbjct: 122 ADITGETLGMSEVNGHALIRLSARTGEGVD 151

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 35.5 bits (80), Expect = 0.001
 Identities = 19/162 (11%), Positives = 44/162 (27%), Gaps = 10/162 (6%)

Query: 9   KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ 68
             ++ F G  + GK+S +      K       T G   L     + D    + L      
Sbjct: 16  GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 75

Query: 69  ERFRSLIPSY------IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGN 122
           E    +   +        +   ++    V               +     S++ ++++  
Sbjct: 76  EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLT 135

Query: 123 KTDLVEKRQVSIEEGEAKSREL----NVMFIETSAKAGFNIK 160
           K D +       +    +   L    +V     S+     + 
Sbjct: 136 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVD 177

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 16/125 (12%), Positives = 33/125 (26%), Gaps = 7/125 (5%)

Query: 11  KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSK--TMYLEDRTVRLQLWDTAGQ 68
            +   G+   GK+S I        +    A  G+  ++     Y       +  WD  G 
Sbjct: 58  NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117

Query: 69  ERFRSLIPSYIR--DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
                   +Y+             +++ +   N       +      +   V    K D 
Sbjct: 118 GSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS-MMKKEFYFVR--TKVDS 174

Query: 127 VEKRQ 131
               +
Sbjct: 175 DITNE 179

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 25/154 (16%), Positives = 51/154 (33%), Gaps = 9/154 (5%)

Query: 13  VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72
             +G  +VGK++++   +  K                   L +   ++   DT G  +  
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVKVAPI-SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM 67

Query: 73  SLIPSYIR------DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDL 126
             +  ++        + V  VV+ V  R       + +          V I+LVGNK D 
Sbjct: 68  DALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA 127

Query: 127 VEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK 160
            +  + +++       E     +  SA     + 
Sbjct: 128 AKYPEEAMKAYHELLPEAEPRML--SALDERQVA 159

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	100.0
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	100.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	100.0
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	100.0
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	100.0
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	100.0
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.97
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.95
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.95
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.94
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.94
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.94
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.94
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.93
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.93
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.92
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.91
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.9
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.9
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.89
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.89
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.88
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.88
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.87
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.87
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.85
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.83
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.82
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.8
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.76
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.76
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.76
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.75
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.73
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.65
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.64
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.63
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.49
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.38
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.36
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.33
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.27
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.26
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.17
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.13
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.7
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.69
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.66
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.64
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.62
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.62
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.53
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.52
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.47
d1okkd2	207	GTPase domain of the signal recognition particle r	98.43
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.41
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.35
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.19
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.15
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.99
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.99
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.98
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.92
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.91
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.85
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.85
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.8
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.74
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.73
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.72
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.69
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.69
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.65
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.64
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.63
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.61
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.6
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.6
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.59
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.57
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.56
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.54
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.53
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.53
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.51
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.5
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.5
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.48
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.48
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.47
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.46
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.46
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.46
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.43
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.43
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.43
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.42
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.41
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.4
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.4
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.4
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.38
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.37
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.36
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.35
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.34
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.34
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.33
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.3
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.29
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.28
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.26
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.24
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.23
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.23
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.23
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.19
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.19
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.18
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.17
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.16
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.15
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.14
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.14
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.09
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.08
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.06
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.05
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.99
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.94
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.93
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.92
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.91
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.9
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.89
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.88
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.87
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.79
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.77
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.76
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.66
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.64
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.62
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.62
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.6
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.6
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.52
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.47
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.43
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.42
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.35
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.33
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.3
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.27
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.22
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.22
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.21
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.18
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.17
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.16
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.14
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.14
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.05
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.02
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.99
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.98
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.94
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.94
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.89
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.88
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.86
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.82
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.76
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.76
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.75
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.69
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.67
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.67
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.64
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.45
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.44
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.42
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.38
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.25
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	95.14
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.12
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.94
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.93
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.93
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.92
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.39
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.38
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.37
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.81
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	93.76
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.4
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.37
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	93.31
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.2
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	92.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	92.64
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.36
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	92.13
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	91.82
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	91.64
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.53
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.12
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.1
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.86
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	90.82
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	90.19
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.01
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	89.45
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.43
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	89.35
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	88.92
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	88.8
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.67
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.47
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	87.97
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	87.59
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.77
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	86.53
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	84.91
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	84.63
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	83.31
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	81.39
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	80.97
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	80.05

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-41  Score=217.39  Aligned_cols=164  Identities=35%  Similarity=0.676  Sum_probs=154.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ++++||+++|.+|+|||||+++|..+.+...+.++.............+....+.+||++|++++..++..+++++++++
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            56899999999999999999999999999888888888888888888889999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      +|||++++++|+.+..|+..+......+.|+++|+||+|+.+.+.+..++++++++..+++|++|||++|.||+++|.+|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999999999888888899999999999998888899999999999999999999999999999999998


Q ss_pred             CCCC
Q 030880          167 PNTV  170 (170)
Q Consensus       167 ~~~i  170 (170)
                      +++|
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            8754

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-41  Score=219.29  Aligned_cols=160  Identities=36%  Similarity=0.631  Sum_probs=149.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||+++|..+.+...+.++.+.+.........+..+.+.+||++|++++..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999888889888888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||+++++|++.+..|+.++.... .++|+++|+||+|+.+.+.+..+++++++++.+++|+++||++|.||+++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccC-CCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHH
Confidence            99999999999999999987765 57999999999999888889999999999999999999999999999999999876


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (164)
T d1z2aa1         161 K  161 (164)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.4e-41  Score=218.15  Aligned_cols=161  Identities=36%  Similarity=0.665  Sum_probs=150.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      -+||+++|++|+|||||++++..+.+.+.+.++.+.+.........+..+++.+||+||++++..++..+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999998888888888888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||+++++++.....|+..+........|+++++||+|+.+...+..+++..++++.+++|++|||++|.||+++|++|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999999999998888777788999999999999888888999999999999999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       165 ~  165 (169)
T d3raba_         165 V  165 (169)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-41  Score=219.16  Aligned_cols=165  Identities=31%  Similarity=0.453  Sum_probs=149.9

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      +++...+||+++|++|+|||||+++++.+.+...+.++.. +.....+..++..+.+.+||++|++++...+..+++++|
T Consensus         1 p~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~   79 (173)
T d2fn4a1           1 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH   79 (173)
T ss_dssp             CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCS
T ss_pred             CCCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccce
Confidence            3566779999999999999999999999998888777654 666777888999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||+++++|++.+..|+..+.+.. ..++|+++|+||+|+...+....+++..+++..+++|++|||++|.||+++
T Consensus        80 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~  159 (173)
T d2fn4a1          80 GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA  159 (173)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             eeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHH
Confidence            9999999999999999999999887654 478999999999999888888899999999999999999999999999999


Q ss_pred             hhcCCCC
Q 030880          163 LMLHPNT  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |++|++.
T Consensus       160 f~~l~~~  166 (173)
T d2fn4a1         160 FEQLVRA  166 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-41  Score=216.50  Aligned_cols=161  Identities=79%  Similarity=1.186  Sum_probs=151.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.++.+...+.++.+..........++..+.+.+||++|++++...+..++++++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999888888888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++++.+++.+..|+..+......++|+++|+||+|+.+...+..+++.+++++.++.|++|||++|.||+++|++|++.
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999999999988877889999999999998888888999999999999999999999999999999998765


Q ss_pred             C
Q 030880          170 V  170 (170)
Q Consensus       170 i  170 (170)
                      +
T Consensus       161 l  161 (164)
T d1yzqa1         161 L  161 (164)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-41  Score=219.11  Aligned_cols=161  Identities=38%  Similarity=0.668  Sum_probs=144.6

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+.+........++..+.+.+||++|++++..++..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            57999999999999999999999999998899988888888888889999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||+++++||+.+..|+..+........|+++++||+|+...+.++.+++++++++.+++|++|||++|.||+++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999887776678899999999999888889999999999999999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       163 ~  163 (167)
T d1z08a1         163 R  163 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-41  Score=218.34  Aligned_cols=161  Identities=39%  Similarity=0.662  Sum_probs=150.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+.+.....+...+..+++.+|||||++++..++..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            48999999999999999999999999888888888888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++++.+..|+..+........|+++|+||+|+.+...+..+++..+++..++++++|||++|.||+++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999999999999988877778999999999999888888999999999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus       165 ~  165 (171)
T d2ew1a1         165 R  165 (171)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-41  Score=221.25  Aligned_cols=168  Identities=26%  Similarity=0.380  Sum_probs=147.2

Q ss_pred             CCCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhc
Q 030880            1 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   80 (170)
Q Consensus         1 m~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~   80 (170)
                      |+..+....+||+++|++|+|||||+++|+.+.+...+.++.. +.........+..+++.+||++|++.+...+..+++
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            7788888889999999999999999999999998888888876 555666677888899999999999999999999999


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcC-Ce
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELN-VM  147 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~-~~  147 (170)
                      ++|++++|||+++++||++...|+....+....+.|+++|+||+|+.+            .+.++.+++.+++++.+ +.
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            999999999999999999876655555554557899999999999864            35678899999999988 69


Q ss_pred             EEEEecCCCCChHHHhhcCCCC
Q 030880          148 FIETSAKAGFNIKVCLMLHPNT  169 (170)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~~  169 (170)
                      |++|||++|.||+++|+.++++
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHH
Confidence            9999999999999999987653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-41  Score=217.01  Aligned_cols=162  Identities=31%  Similarity=0.406  Sum_probs=148.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||+++|+++.+...+.|+.+.+ +...+.+++..+.+.+||++|.+.+..+...+++++|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT-FTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEE-EEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecc-cceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            356899999999999999999999999888888888755 4566788999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||+++++||+.+..|+..+.+... .++|+++|+||+|+...+.++.+++.+++++++++|++|||++|.||+++|+.
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999999877654 68999999999999888889999999999999999999999999999999998


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |+++
T Consensus       161 li~~  164 (167)
T d1xtqa1         161 IILE  164 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-40  Score=215.80  Aligned_cols=162  Identities=30%  Similarity=0.476  Sum_probs=147.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+ +.+......++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE-DSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC-EEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCccee-eccccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            4679999999999999999999999998888778776 445666778899999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC-ChHHHhh
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF-NIKVCLM  164 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~  164 (170)
                      +|||+++++||+.+..|+..+.+.. ..++|+++++||+|+...+.++.+++.+++++++++|+++||+++. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            9999999999999999999987765 4689999999999998888899999999999999999999999986 9999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      .|++.
T Consensus       161 ~l~~~  165 (169)
T d1x1ra1         161 DLVRV  165 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-40  Score=215.22  Aligned_cols=161  Identities=34%  Similarity=0.668  Sum_probs=151.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++.++.+...+.++.+.+........++..+++.+||++|++++..++..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            47999999999999999999999998888888888788888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||+++++|++.+..|+..+.+......|+++++||+|+........+++..+++..++++++|||++|.||+++|++|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887788999999999999888888889999999999999999999999999999999876


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       164 ~  164 (166)
T d1z0fa1         164 K  164 (166)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=216.02  Aligned_cols=161  Identities=30%  Similarity=0.459  Sum_probs=145.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .++||+++|++|+|||||+++++.+.+...+.++.+ +........++..+.+.+||++|++.+...+..+++++|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC-EEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCccee-eccccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999998888888877 4445566788999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC--CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG--SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      |||++++++++.+..|+..+.....  .++|+++|+||+|+.+.+++..++++++++.++++|++|||++|.||+++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999988876543  67999999999999888889999999999999999999999999999999998


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       160 l~~~  163 (171)
T d2erxa1         160 LLNL  163 (171)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-40  Score=214.56  Aligned_cols=158  Identities=30%  Similarity=0.405  Sum_probs=130.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|+|||||++++.+...... .++.. +.+...+..++..+.+.+||++|++++..++..+++++|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~-~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccCCc-CCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999998765432 33333 455667778999999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      |++++++++.+..|+.++..... ..+|+++|+||+|+.+.++++..+++++++..+++|++|||++|.|++++|++|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            99999999999999999877654 67899999999999888889999999999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       160 ~  160 (168)
T d2gjsa1         160 Q  160 (168)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2e-40  Score=215.26  Aligned_cols=161  Identities=32%  Similarity=0.539  Sum_probs=144.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +-+||+++|++|+|||||+++++.+.+...+.|+.+.. +...+.+++..+.+.+||++|++++..++..+++++|++++
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~-~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccc-cccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            45799999999999999999999999988888887744 45667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||++++++++.+..|+.++.+.. ..+.|+++|+||+|+.+.+.+..++++++++..++.|++|||++|.||+++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999987765 4789999999999998888899999999999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       162 ~~~  164 (168)
T d1u8za_         162 MRE  164 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=212.02  Aligned_cols=163  Identities=39%  Similarity=0.762  Sum_probs=153.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||+++|..+.+...+.++.+..............+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999988888988888888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      +||++++++++.+..|+..+.+...++.|+++|+||+|+..++.++.+++..+++..+++|++|||++|.||+++|++|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888778999999999999988888999999999999999999999999999999999987


Q ss_pred             CCC
Q 030880          168 NTV  170 (170)
Q Consensus       168 ~~i  170 (170)
                      +.|
T Consensus       165 ~~i  167 (170)
T d1r2qa_         165 KKL  167 (170)
T ss_dssp             HTS
T ss_pred             HHH
Confidence            654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-40  Score=215.44  Aligned_cols=162  Identities=33%  Similarity=0.513  Sum_probs=148.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ++++||+++|++|+|||||+++++++.+...+.++.+ +........++..+.+.+||++|++.+......+++++|+++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            4689999999999999999999999998888888776 666777778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++++.+..|+..+..... +++|++||+||+|+.+.+.+..+++..++++.+++|++|||++|.||+++|++
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            99999999999999999998877553 68999999999999888888999999999999999999999999999999999


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |+++
T Consensus       160 i~~~  163 (167)
T d1kaoa_         160 IVRQ  163 (167)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-40  Score=212.91  Aligned_cols=162  Identities=30%  Similarity=0.508  Sum_probs=146.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ++++||+++|++|+|||||++++..+.+...+.++.+ .........++..+.+.+||++|++.+...+..+++++|+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSE-EEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccc-cccceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            4679999999999999999999999999888888877 444566677888999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc-CCeEEEEecCCCCChHHHhh
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL-NVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~  164 (170)
                      +|||+++++||+++..|+..+.+.. .+++|+++|+||+|+........+++..++++. +++|++|||++|.||+++|+
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999999999887755 468999999999999888888899999999875 68999999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|++.
T Consensus       160 ~l~~~  164 (167)
T d1c1ya_         160 DLVRQ  164 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=212.24  Aligned_cols=161  Identities=37%  Similarity=0.727  Sum_probs=145.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      -+||+++|++|+|||||++++.++.+...+.++.............+....+.+||++|++.+..++..+++.+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            37999999999999999999999998888888887777788788888899999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++++|+.+..|+..+......++|++||+||+|+...+....+++..++++.+++|+++||++|.||+++|.+|++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887788999999999999888888899999999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      +
T Consensus       163 ~  163 (173)
T d2a5ja1         163 E  163 (173)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-39  Score=212.16  Aligned_cols=161  Identities=34%  Similarity=0.564  Sum_probs=143.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .++||+++|++|+|||||++++..+.+...+.++.+ +........++..+.+.+||++|++++......+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            348999999999999999999999998888888776 6667778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLH  166 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  166 (170)
                      |||.++++|++.+..|+..+.... ....|++||+||+|+...+.+..+++.++++..+++|++|||++|.||+++|.+|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999998876655 3679999999999998888899999999999999999999999999999999998


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       163 ~~~  165 (171)
T d2erya1         163 VRV  165 (171)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.3e-39  Score=208.52  Aligned_cols=163  Identities=42%  Similarity=0.763  Sum_probs=151.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++.++.+.+.+.++.+.++..+.+...+..+.+.+||++|++++..++..+++++|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            46899999999999999999999999998888988888888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC---ccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhh
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE---KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |||++++++++.+..|+...........|+++++||+|+.+   .+.+..+++.++++..+++|+++||++|.||+++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            99999999999999999888887778899999999999854   367788999999999999999999999999999999


Q ss_pred             cCCCCC
Q 030880          165 LHPNTV  170 (170)
Q Consensus       165 ~l~~~i  170 (170)
                      .|+++|
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            998765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=210.51  Aligned_cols=161  Identities=35%  Similarity=0.681  Sum_probs=147.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      -+||+++|++|+|||||++++.++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..++++++++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            47999999999999999999999999888888888788888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||.++++|+..+..|+..+.....+++|+++|+||+|+.+.+....+....+.+..+.++++|||++|.|++++|+++.+
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999999998888888999999999999877778888889999999999999999999999999998764


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       164 ~  164 (175)
T d2f9la1         164 E  164 (175)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-39  Score=211.20  Aligned_cols=161  Identities=35%  Similarity=0.664  Sum_probs=150.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+..........++....+.+||+||++++..++..++++++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999888888888788888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||.++++++..+..|+..+......+.|+++++||+|+.........++..+++..+++|++|||++|.|++++|++|.+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999999999999998887788999999999999888888889999999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       165 ~  165 (174)
T d2bmea1         165 K  165 (174)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.7e-40  Score=213.17  Aligned_cols=161  Identities=40%  Similarity=0.723  Sum_probs=122.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      -+||+++|.+++|||||+++|+++.+.+.+.++.+.+.....+..++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            47999999999999999999999998888888888888888899999999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||++++.|++.+..|+..+......+.|+++++||.|.........+++..++...+++|++|||++|.||+++|++|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999998887788999999999999888888888999999999999999999999999999999876


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       166 ~  166 (173)
T d2fu5c1         166 D  166 (173)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-39  Score=209.64  Aligned_cols=159  Identities=32%  Similarity=0.444  Sum_probs=140.2

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|++|+|||||+++++.+.+.+.+.|+.+..+ ......++..+.+.+||++|++.+. ....++++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccc-cccccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            68999999999999999999999999888888887554 4455678889999999999998764 556788999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCC-hHHHhhcC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFN-IKVCLMLH  166 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-i~~~~~~l  166 (170)
                      ||++++++++.+..|+....... ..+.|+++|+||+|+.+++.++.+++++++++++++|++|||++|.| |+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999999998877665544 36899999999999988888999999999999999999999999985 99999988


Q ss_pred             CCC
Q 030880          167 PNT  169 (170)
Q Consensus       167 ~~~  169 (170)
                      ++.
T Consensus       160 ~~~  162 (168)
T d2atva1         160 CRE  162 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-39  Score=209.88  Aligned_cols=160  Identities=28%  Similarity=0.423  Sum_probs=141.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      +.||+++|++|+|||||++++..+.+...+.|+.+ +.........+..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            57999999999999999999999999888888776 55566677888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      ||+++++||+.+..|+........+++|++||+||+|+.+.            ..+..+++.+++++.+. .|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999999877666655555678999999999998642            45778999999999985 899999999


Q ss_pred             CCChHHHhhcCCCC
Q 030880          156 GFNIKVCLMLHPNT  169 (170)
Q Consensus       156 ~~~i~~~~~~l~~~  169 (170)
                      |.||+++|+.+++.
T Consensus       161 ~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         161 KDGVREVFEMATRA  174 (177)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH
Confidence            99999999988653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-38  Score=211.58  Aligned_cols=161  Identities=39%  Similarity=0.665  Sum_probs=150.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++..+.+...+.++.+.......+.+.+..+.+.+||+||++++..++..++++++++|+
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            34899999999999999999999999888888888878888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||+++++++.....|+..+.+....+.|+++++||+|+.+...+..++...+++..++.|+++||++|.|++++|++|+
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            99999999999999999988877778999999999999998888999999999999999999999999999999999886


Q ss_pred             C
Q 030880          168 N  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       165 ~  165 (194)
T d2bcgy1         165 R  165 (194)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-40  Score=213.57  Aligned_cols=158  Identities=28%  Similarity=0.567  Sum_probs=139.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|++|+|||||++++.++.+...+.|+.+.+........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999999888889988888888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||+++++||+.+..|+..+.... .++|+++|+||+|+......  .++..++...+++|+++||++|.|++++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~-~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHH-CSCCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhcc-CCCceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999987765 68999999999999655433  4566788899999999999999999999999875


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       160 ~  160 (170)
T d1i2ma_         160 K  160 (170)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-39  Score=207.33  Aligned_cols=161  Identities=28%  Similarity=0.510  Sum_probs=144.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ++++||+++|++|+|||||+++|+++.+...+.++.+... .......+..+.+.+||++|++.+......+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceee-ccceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            4679999999999999999999999999888888877444 445667888899999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++.+++.+..|+..+.+... .++|+++|+||+|+. .+.+..+++.++++..+++|++|||++|.||+++|++
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~  158 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYT  158 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999999999887654 679999999999985 5567789999999999999999999999999999998


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |++.
T Consensus       159 i~~~  162 (166)
T d1ctqa_         159 LVRE  162 (166)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=206.19  Aligned_cols=161  Identities=39%  Similarity=0.700  Sum_probs=139.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      .+||+++|++++|||||+++++.+.+... +.++.+.+.........+..+++.+|||||++.+..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            47999999999999999999999887544 34555677777788889999999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      |||+++++++..+..|+..+........|+++++||+|......+..+++.++++..+++|+++||++|.||+++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999999999988887778899999999999988888999999999999999999999999999999999987


Q ss_pred             CC
Q 030880          168 NT  169 (170)
Q Consensus       168 ~~  169 (170)
                      +.
T Consensus       166 ~~  167 (170)
T d2g6ba1         166 KE  167 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-38  Score=208.48  Aligned_cols=160  Identities=29%  Similarity=0.382  Sum_probs=140.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      ..+||+++|++|+|||||++++..+.+...+.++.+ ..........+..+.+.+||++|++++...+..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            468999999999999999999999999888888877 5556667788889999999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEecC
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSAK  154 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~  154 (170)
                      |||+++++||+.+..|+.........+.|+++|+||+|+.+.            ..+..+++.+++++.+ +.|++|||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            999999999999987666655555678999999999998632            3578899999999875 699999999


Q ss_pred             CCCChHHHhhcCCC
Q 030880          155 AGFNIKVCLMLHPN  168 (170)
Q Consensus       155 ~~~~i~~~~~~l~~  168 (170)
                      +|.||+++|+.+++
T Consensus       161 ~~~~V~e~f~~l~~  174 (191)
T d2ngra_         161 TQKGLKNVFDEAIL  174 (191)
T ss_dssp             TCTTHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHH
Confidence            99999999997753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-39  Score=210.88  Aligned_cols=161  Identities=37%  Similarity=0.638  Sum_probs=142.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEEC----------CeEEEEEEEeCCCcccccccchhh
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLE----------DRTVRLQLWDTAGQERFRSLIPSY   78 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~i~D~~g~~~~~~~~~~~   78 (170)
                      -+||+++|++|+|||||+++|+++.+...+.++.+.++....+..+          ...+++.+||++|++++..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            4899999999999999999999999888877777766666555443          234689999999999999999999


Q ss_pred             hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCC
Q 030880           79 IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGF  157 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  157 (170)
                      ++++|++|+|||++++++++.+..|+..+.... ....|+++|+||.|+...+++..+++.+++++.+++|++|||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999999999998876654 3678899999999998888999999999999999999999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      ||+++|++|.+.
T Consensus       165 ~i~e~f~~l~~~  176 (186)
T d2f7sa1         165 NVEKAVETLLDL  176 (186)
T ss_dssp             THHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999988653

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-37  Score=200.81  Aligned_cols=159  Identities=35%  Similarity=0.608  Sum_probs=143.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-cchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-LIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-~~~~~~~~~~~~i~   87 (170)
                      .+||+++|++|+|||||++++..+.+...+.++.+................+.+||++|...+.. .+..+++++|++++
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            48999999999999999999999999888888888777778888899999999999999877654 56778999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCC---CCChHHHh
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKA---GFNIKVCL  163 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  163 (170)
                      |||++++++|+.+..|+.++.+... .++|++||+||+|+.++++++.+++++++++++++|++|||++   +.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            9999999999999999999877653 6899999999999988888999999999999999999999997   55999999


Q ss_pred             hcCC
Q 030880          164 MLHP  167 (170)
Q Consensus       164 ~~l~  167 (170)
                      .+||
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.3e-38  Score=203.86  Aligned_cols=160  Identities=38%  Similarity=0.715  Sum_probs=141.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      -+||+++|++|+|||||+++++.+.+...+.++.+.+.....+...+..+.+.+||+||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999999888889998888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhcCCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ||.+++++++.+..|+...........|++++++|.|.. ......+++.++++..++++++|||++|.|++++|++|++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~  160 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  160 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999998888887889999999999974 5556788999999999999999999999999999998865


Q ss_pred             C
Q 030880          169 T  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       161 ~  161 (166)
T d1g16a_         161 L  161 (166)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=202.98  Aligned_cols=162  Identities=40%  Similarity=0.695  Sum_probs=147.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+.+||+++|++|+|||||++++.++.+...+.++.+.......+...+..+.+.+||+||++++..++..+++++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999999998888888877777888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC-CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG-SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      +|||++++++++....|+.++..... ...|+++++||.|. .++.+...++.++++..++.++++||++|.|++++|++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~  163 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK-ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  163 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS-SSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeecccc-ccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999999877553 67889999999997 45678889999999999999999999999999999998


Q ss_pred             CCCC
Q 030880          166 HPNT  169 (170)
Q Consensus       166 l~~~  169 (170)
                      |+++
T Consensus       164 l~~~  167 (177)
T d1x3sa1         164 LVEK  167 (177)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-38  Score=205.99  Aligned_cols=162  Identities=28%  Similarity=0.419  Sum_probs=140.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      ++.+||+++|++|+|||||+++|+.+.+...+.++.. +.....+..++..+++.+||++|++.+..++..+++++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4579999999999999999999999999888888876 555666778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc------------cccCHHHHHHHHhhcC-CeEEEEec
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK------------RQVSIEEGEAKSRELN-VMFIETSA  153 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~  153 (170)
                      +|||+++++||+.+..|+....+....++|++||+||+|+.+.            ......++..+++..+ +.|++|||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999999876544444444578999999999998543            3356778889998887 69999999


Q ss_pred             CCCCChHHHhhcCCCC
Q 030880          154 KAGFNIKVCLMLHPNT  169 (170)
Q Consensus       154 ~~~~~i~~~~~~l~~~  169 (170)
                      ++|.||+++|+.|++.
T Consensus       162 k~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             TTCTTHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHH
Confidence            9999999999988754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.1e-38  Score=203.32  Aligned_cols=160  Identities=29%  Similarity=0.432  Sum_probs=136.3

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCC---cccccccchhhhcCCc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG---QERFRSLIPSYIRDSS   83 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g---~~~~~~~~~~~~~~~~   83 (170)
                      ..+||+++|++|+|||||++++.++... ....++.+.+...+.+..++..+.+.+||+++   ++++  ++..+++++|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999999987653 33345555667777888899999999999765   4444  5667899999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      ++++|||++++++++++..|+..+.... .+++|+++|+||+|+.+.++++.++++++++.++++|++|||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            9999999999999999999998887654 368999999999999888889999999999999999999999999999999


Q ss_pred             hhcCCCC
Q 030880          163 LMLHPNT  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |+.|+++
T Consensus       160 f~~l~~~  166 (172)
T d2g3ya1         160 FEGIVRQ  166 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-37  Score=201.86  Aligned_cols=159  Identities=24%  Similarity=0.417  Sum_probs=139.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      ++||+++|++|+|||||+++++.+.++..+.|+.. +........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999999888888775 55556667788999999999999999999999999999999999


Q ss_pred             EeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC------------ccccCHHHHHHHHhhcCC-eEEEEecCC
Q 030880           89 YDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE------------KRQVSIEEGEAKSRELNV-MFIETSAKA  155 (170)
Q Consensus        89 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~~  155 (170)
                      ||+++++||+.+..|+.........+.|+++|+||+|+..            ...++.+++..++++.+. .|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            9999999999988766665555557899999999999853            355788999999999875 899999999


Q ss_pred             CC-ChHHHhhcCCC
Q 030880          156 GF-NIKVCLMLHPN  168 (170)
Q Consensus       156 ~~-~i~~~~~~l~~  168 (170)
                      |. |++++|+.++.
T Consensus       161 ~~n~i~~~F~~~~~  174 (179)
T d1m7ba_         161 SENSVRDIFHVATL  174 (179)
T ss_dssp             BHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHH
Confidence            98 59999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-36  Score=198.05  Aligned_cols=162  Identities=38%  Similarity=0.615  Sum_probs=142.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+-+||+++|++++|||||++++..+.+...+.++.+...........+..+.+.+||++|+.++...+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            34579999999999999999999999998888888887887888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCChHH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNIKV  161 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~  161 (170)
                      ++||.+++.|++.+..|+.++.....    .+.|+++|+||+|+. ++.+..+++++++++.+ ++|++|||++|.||++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~-~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchh-hccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999988866532    578999999999985 46788899999998875 7999999999999999


Q ss_pred             HhhcCCCC
Q 030880          162 CLMLHPNT  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|+++
T Consensus       163 ~f~~l~~~  170 (174)
T d1wmsa_         163 AFEEAVRR  170 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.4e-37  Score=199.27  Aligned_cols=161  Identities=37%  Similarity=0.619  Sum_probs=126.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEE-ECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      -+||+++|++|+|||||++++.++.+...+.++.+......... .......+.+||++|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            37999999999999999999999998887777766555444443 34455779999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccc-cCHHHHHHHHhhcC-CeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQ-VSIEEGEAKSRELN-VMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~  161 (170)
                      +||++++.||+.+..|+.++.....    .++|+++++||+|+.+.+. +..++++++++..+ ++|++|||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            9999999999999999999876532    5789999999999976544 67888999999986 6999999999999999


Q ss_pred             HhhcCCCC
Q 030880          162 CLMLHPNT  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|++|++.
T Consensus       162 ~f~~l~~~  169 (175)
T d1ky3a_         162 AFEEIARS  169 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.2e-36  Score=197.99  Aligned_cols=159  Identities=39%  Similarity=0.675  Sum_probs=141.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|.+|||||||+++++++.+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|+++++|
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999888898888888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhcC----CCCeEEEEEeCCCCCCccccCHHHHHHHHh-hcCCeEEEEecCCCCChHHHhh
Q 030880           90 DVASRQSFLNTSKWIDEVRTERG----SDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-ELNVMFIETSAKAGFNIKVCLM  164 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~  164 (170)
                      |.+++.+++.+..|+..+.....    .++|+++|+||+|+.+ ..+..++...++. ..++++++|||++|.||+++|+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999999999998876542    4689999999999854 4566667777765 4578999999999999999999


Q ss_pred             cCCCC
Q 030880          165 LHPNT  169 (170)
Q Consensus       165 ~l~~~  169 (170)
                      +|++.
T Consensus       162 ~l~~~  166 (184)
T d1vg8a_         162 TIARN  166 (184)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-35  Score=189.36  Aligned_cols=157  Identities=20%  Similarity=0.338  Sum_probs=131.2

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA   85 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~   85 (170)
                      .++.+||+++|++|+|||||++++.++.+... .++.. +.+...+.+++..+.+.+||++|+..+     .+++++|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~-~~t~~-~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTES-EQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCCC-CCSSC-EEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCCc-CCccc-eeEEEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            45689999999999999999999999987643 44444 445667788999999999999998754     478899999


Q ss_pred             EEEEeCCChhhHHhHHHHHHHHHHhc---CCCCeEEEEEeCCCCC--CccccCHHHHHHHHhh-cCCeEEEEecCCCCCh
Q 030880           86 VVVYDVASRQSFLNTSKWIDEVRTER---GSDVIIVLVGNKTDLV--EKRQVSIEEGEAKSRE-LNVMFIETSAKAGFNI  159 (170)
Q Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i  159 (170)
                      |+|||+++++||+.+..|+..+....   ....|+++|+||.|+.  ..+.+..+++..++.+ .++.|++|||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999998886653   3567999999988874  3456778889988755 5689999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      +++|..+++.
T Consensus       155 ~~~F~~l~~~  164 (175)
T d2bmja1         155 DRVFQEVAQK  164 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=100.00  E-value=1.3e-35  Score=191.79  Aligned_cols=157  Identities=23%  Similarity=0.344  Sum_probs=128.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +++||+++|++++|||||+++|..+.+...+.||.+.+...  ...  ..+.+.+||+||++.+...+..++++++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhc
Confidence            36899999999999999999999999888777877655433  222  35789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHH-----HHHhhcCCeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGE-----AKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      |||+++++++++...|+..+.... .+++|++||+||.|+.+..  ...+..     ..+...++.++++||++|.|+++
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e  154 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  154 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHH
Confidence            999999999999988888776544 3789999999999986432  222222     22334466899999999999999


Q ss_pred             HhhcCCCCC
Q 030880          162 CLMLHPNTV  170 (170)
Q Consensus       162 ~~~~l~~~i  170 (170)
                      +|+||++.+
T Consensus       155 ~~~~l~~~~  163 (164)
T d1zd9a1         155 TLQWLIQHS  163 (164)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHcc
Confidence            999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=100.00  E-value=1.4e-34  Score=188.81  Aligned_cols=160  Identities=23%  Similarity=0.352  Sum_probs=126.2

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCc
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   83 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   83 (170)
                      .++.+++||+++|++|+|||||++++.++.+... .++.+.+.  ..+..  ..+.+.+||++|++.+...+..+++.+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~-~~~~~~~~--~~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNI--KSVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-EEETTEEE--EEEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcc-eeeeeeeE--EEecc--CCeeEeEeeccccccchhHHHHHhhccc
Confidence            3456789999999999999999999998876432 33333332  22322  3478999999999999999999999999


Q ss_pred             EEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHH-----HHhhcCCeEEEEecCCCC
Q 030880           84 VAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGF  157 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~  157 (170)
                      ++++|||++++.++.++..|+..+.... ..++|++|++||+|+.++..  ..+..+     .+...++.+++|||++|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  163 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGE  163 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCT
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            9999999999999999988887776544 36799999999999965432  222222     223445689999999999


Q ss_pred             ChHHHhhcCCCCC
Q 030880          158 NIKVCLMLHPNTV  170 (170)
Q Consensus       158 ~i~~~~~~l~~~i  170 (170)
                      |++++|+||+++|
T Consensus       164 gv~e~~~~l~~~i  176 (176)
T d1fzqa_         164 GVQDGMNWVCKNV  176 (176)
T ss_dssp             THHHHHHHHHHTC
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999998875

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=100.00  E-value=1.1e-33  Score=182.73  Aligned_cols=155  Identities=24%  Similarity=0.374  Sum_probs=121.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +++||+++|++|+|||||+++|.++.+. ...++.+.....  +  ....+.+.+||+||++.++..+..+++.++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNIKT--L--EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEEEE--E--EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeeeee--c--cccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            4689999999999999999999987654 445655533322  2  2345789999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccccCHHHHHHHH-----hhcCCeEEEEecCCCCChHH
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS-----RELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~  161 (170)
                      +||+++..++.+...++...... ...+.|++|++||+|+.+....  .+.....     ...++.+++|||++|+|+++
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  153 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALELDSIRSHHWRIQGCSAVTGEDLLP  153 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHhhhhhcCCCEEEEEECCCCCCHHH
Confidence            99999999999987777665443 3478999999999999654433  2222221     23346899999999999999


Q ss_pred             HhhcCCCC
Q 030880          162 CLMLHPNT  169 (170)
Q Consensus       162 ~~~~l~~~  169 (170)
                      +|+||.++
T Consensus       154 ~~~~l~~~  161 (165)
T d1ksha_         154 GIDWLLDD  161 (165)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=185.98  Aligned_cols=158  Identities=22%  Similarity=0.358  Sum_probs=122.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+++||+++|++++|||||++++..+.... ..++.+.....    .....+.+.+||+||++.+...+..+++++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            467999999999999999999999877543 23444433222    2234478999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCcccc---CHHHHHHHHhhcCCeEEEEecCCCCChHHH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKVC  162 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  162 (170)
                      +|||+++.+++..+..|+....... ....|+++++||+|+.+....   ........+...++.+++|||++|+||+++
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            9999999999999988887765543 468999999999999644221   111112233444678999999999999999


Q ss_pred             hhcCCCC
Q 030880          163 LMLHPNT  169 (170)
Q Consensus       163 ~~~l~~~  169 (170)
                      |+||.++
T Consensus       165 ~~~l~~~  171 (173)
T d1e0sa_         165 LTWLTSN  171 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=100.00  E-value=2.2e-34  Score=188.86  Aligned_cols=158  Identities=22%  Similarity=0.324  Sum_probs=119.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcE
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSV   84 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   84 (170)
                      ...+.+||+++|++|+|||||++++..+.... ..++.+.....  .  ....+++.+||+||++.+...+..+++++++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~-~~~t~~~~~~~--~--~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVVT-TKPTIGFNVET--L--SYKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEEE-ECSSTTCCEEE--E--EETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceEEEE--E--eeCCEEEEEEecccccccchhHHhhhcccee
Confidence            34568999999999999999999998776543 23444333322  2  2235789999999999999999999999999


Q ss_pred             EEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHH-----HHhhcCCeEEEEecCCCCC
Q 030880           85 AVVVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEA-----KSRELNVMFIETSAKAGFN  158 (170)
Q Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~  158 (170)
                      +++|||.+++.++.+...|+....... ..+.|++|++||+|+.+..  ...+..+     .+...++.+++|||++|+|
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~g  165 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKGEG  165 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGTBT
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc--CHHHHHHHHHHHHHhhCCCEEEEEECCCCCC
Confidence            999999999999999988887765543 3679999999999985432  2333332     2344467899999999999


Q ss_pred             hHHHhhcCCCC
Q 030880          159 IKVCLMLHPNT  169 (170)
Q Consensus       159 i~~~~~~l~~~  169 (170)
                      ++++|++|.+.
T Consensus       166 v~e~~~~l~~~  176 (182)
T d1moza_         166 ITEGLDWLIDV  176 (182)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.97  E-value=4.9e-32  Score=173.82  Aligned_cols=156  Identities=20%  Similarity=0.296  Sum_probs=123.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEE
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   89 (170)
                      +||+++|++|||||||++++.++.+...+.....     .........+.+.+||++|...+...+..+++.+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999998877554333221     12233455678999999999999999999999999999999


Q ss_pred             eCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCcccc---CHHHHHHHHhhcCCeEEEEecCCCCChHHHhhc
Q 030880           90 DVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELNVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus        90 d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  165 (170)
                      |.+++.++..+..|+.++.... ....|+++++||.|+.+....   .......+++..++.+++|||++|+|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999999988888876544 367899999999998654322   222223344556789999999999999999999


Q ss_pred             CCCCC
Q 030880          166 HPNTV  170 (170)
Q Consensus       166 l~~~i  170 (170)
                      |.+++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=162.56  Aligned_cols=156  Identities=21%  Similarity=0.287  Sum_probs=115.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+++||+++|.+|||||||++++.++.+... .++....  .....  .....+.+||+++++.+...+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~--~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIV--INNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSS--CEEEE--ETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-cccccee--EEEEe--ecceEEEEeccccccccccchhhhhccceeee
Confidence            4679999999999999999999999876432 2222211  11122  23468999999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHH-----HhhcCCeEEEEecCCCCChH
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAK-----SRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~  160 (170)
                      +++|.++..+++....+........ ....|+++++||+|+.....  ..+....     +...++.++++||++|+|++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999999988777666554443 37899999999999864432  2222222     23445689999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      ++|++|.++
T Consensus       166 e~~~~L~~~  174 (177)
T d1zj6a1         166 QGLEWMMSR  174 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.9e-27  Score=149.29  Aligned_cols=152  Identities=22%  Similarity=0.211  Sum_probs=118.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEe
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYD   90 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d   90 (170)
                      ||+++|++++|||||+++|.++.+.. ..|+......    ..........+||++|...+...+..+++.++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            79999999999999999999988653 3444443332    233344678899999999999999999999999999999


Q ss_pred             CCChhhHHhHHHHHHHHHHhc-CCCCeEEEEEeCCCCCCccccCHHHHHHHH------------hhcCCeEEEEecCCCC
Q 030880           91 VASRQSFLNTSKWIDEVRTER-GSDVIIVLVGNKTDLVEKRQVSIEEGEAKS------------RELNVMFIETSAKAGF  157 (170)
Q Consensus        91 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~~~~  157 (170)
                      .++..++.....++....... ..+.|+++++||.|+....  ...+..+..            ...++.+++|||++|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~  154 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV--SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRN  154 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC--CHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTB
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC--CHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCC
Confidence            999999888877777665544 3788999999999985432  333332222            2224579999999999


Q ss_pred             ChHHHhhcCCCC
Q 030880          158 NIKVCLMLHPNT  169 (170)
Q Consensus       158 ~i~~~~~~l~~~  169 (170)
                      |++|+|+||+|.
T Consensus       155 Gv~e~~~~l~~~  166 (166)
T d2qtvb1         155 GYLEAFQWLSQY  166 (166)
T ss_dssp             SHHHHHHHHTTC
T ss_pred             CHHHHHHHHhCC
Confidence            999999999873

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.95  E-value=7.5e-28  Score=155.25  Aligned_cols=157  Identities=20%  Similarity=0.324  Sum_probs=120.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +++||+++|.+|+|||||++++.++.+... .++.....  .  ........+.+||.++.+.+...+...+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV--E--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE--E--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee--e--eeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            458999999999999999999999887643 33333222  1  222334689999999999999999999999999999


Q ss_pred             EEeCCChhhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccc---cCHHHHHHHHhhcCCeEEEEecCCCCChHHHh
Q 030880           88 VYDVASRQSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQ---VSIEEGEAKSRELNVMFIETSAKAGFNIKVCL  163 (170)
Q Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  163 (170)
                      ++|..+..++.....++...... .....|+++++||.|+.....   +....+..++...+++++++||++|.||+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99999988888876655554333 346789999999999965432   22222334455667899999999999999999


Q ss_pred             hcCCCC
Q 030880          164 MLHPNT  169 (170)
Q Consensus       164 ~~l~~~  169 (170)
                      ++|++.
T Consensus       159 ~~l~~~  164 (169)
T d1upta_         159 EWLVET  164 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.94  E-value=4.1e-27  Score=153.40  Aligned_cols=154  Identities=17%  Similarity=0.082  Sum_probs=105.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCccccccc--------chhhhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL--------IPSYIR   80 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~   80 (170)
                      -.|+++|.+|+|||||+++|++..... ...+..+...........  ...+.+|||||.......        ...+++
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~--~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeee--eeeeeecccccccccccccchhcccccccccc
Confidence            369999999999999999999875422 122222223333333333  357899999997554332        234467


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCCh
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFNI  159 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i  159 (170)
                      ++|++++|+|++++.+... ..|...+. ....+.|+++|+||+|+....   .+....+.+.++ ..++++||++|.|+
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~-~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi  158 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALK-PLVGKVPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQV  158 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHG-GGTTTSCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhhee-ccccchhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCH
Confidence            9999999999987644322 33334443 334678999999999986542   233445555555 48899999999999


Q ss_pred             HHHhhcCCCCC
Q 030880          160 KVCLMLHPNTV  170 (170)
Q Consensus       160 ~~~~~~l~~~i  170 (170)
                      ++++++|++.+
T Consensus       159 ~~L~~~i~~~l  169 (178)
T d1wf3a1         159 AELKADLLALM  169 (178)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHHHHhC
Confidence            99999987753

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.5e-27  Score=157.39  Aligned_cols=152  Identities=18%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +++||+++|+.|||||||+++|..+.++..+.++         ..+.....++.+||++|++.+...+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~---------~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVE---------THFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEE---------EEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCCCccEEE---------EEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4789999999999999999999877665433221         2233345789999999999999999999999999999


Q ss_pred             EEeCCChhhHH-----------hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc---------------cccCHHHHHH--
Q 030880           88 VYDVASRQSFL-----------NTSKWIDEVRTERGSDVIIVLVGNKTDLVEK---------------RQVSIEEGEA--  139 (170)
Q Consensus        88 v~d~~~~~s~~-----------~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~---------------~~~~~~~~~~--  139 (170)
                      |||+++.+++.           ....|...+........|+++++||+|+...               ......++..  
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999877652           2344555555455578999999999986321               1111222221  


Q ss_pred             ---HHh------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          140 ---KSR------ELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       140 ---~~~------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                         +..      ..++.+++|||++|.||+++|+.+.+
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~  189 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  189 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHH
Confidence               111      12356789999999999999988754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.94  E-value=4.2e-26  Score=149.09  Aligned_cols=157  Identities=20%  Similarity=0.244  Sum_probs=112.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEE
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   86 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i   86 (170)
                      .+..||+++|++|+|||||+++|.++.+... .++.+...  ......+  ..+.+||+.++..+...+..+.+..++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccce--eEEEecc--cccccccccchhhhhhHHhhhhcccceee
Confidence            4678999999999999999999998876533 33332222  2233333  46889999999999999999999999999


Q ss_pred             EEEeCCChhhHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCccccCHHHHHHHHh-----------------hcCCeE
Q 030880           87 VVYDVASRQSFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR-----------------ELNVMF  148 (170)
Q Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----------------~~~~~~  148 (170)
                      +++|.++...+.....++..... ....+.|+++++||.|+...  ....+..+...                 ..++.+
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            99999999888887665555443 33478999999999998543  33344443332                 123469


Q ss_pred             EEEecCCCCChHHHhhcCCCCC
Q 030880          149 IETSAKAGFNIKVCLMLHPNTV  170 (170)
Q Consensus       149 ~~~s~~~~~~i~~~~~~l~~~i  170 (170)
                      ++|||++|+|++|+|+||+++|
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999999875

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.2e-28  Score=159.44  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=118.9

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVV   87 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   87 (170)
                      +++||+++|+.|||||||++++..+.+  .+.||.+.+...    +......+.+||++|++.+...+..+++.++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            478999999999999999999998876  356777755432    33455789999999999999999999999999999


Q ss_pred             EEeCCChh-----------hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc----------------ccCHHHHHHH
Q 030880           88 VYDVASRQ-----------SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR----------------QVSIEEGEAK  140 (170)
Q Consensus        88 v~d~~~~~-----------s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~  140 (170)
                      +||.++..           .++....|...+......++|+++++||.|+.+..                ..+...+..+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            99998753           34556667777766666889999999999974321                1222333332


Q ss_pred             Hh----------hcCCeEEEEecCCCCChHHHhhcCCC
Q 030880          141 SR----------ELNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       141 ~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ..          ...+.+++|||++|+||+++|+.|.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~  192 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  192 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHH
Confidence            21          12346789999999999999988754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7.8e-27  Score=149.64  Aligned_cols=150  Identities=19%  Similarity=0.204  Sum_probs=107.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc--------cchhhhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS--------LIPSYIR   80 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--------~~~~~~~   80 (170)
                      +||+++|++++|||||+|+|++..... ...+....+.........+  ..+.++|+||..+...        ....++.
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~   79 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEIE   79 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccC--ceeeeccccccccccccchhHHHHHHHHHHH
Confidence            799999999999999999999765432 2233333333333333444  5788999999554322        2334578


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      .+|++++++|..++.+++....|...+.. ...++|+++|+||+|+.+....       +.+..+.+++++||++|.|++
T Consensus        80 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~iilv~NK~Dl~~~~~~-------~~~~~~~~~~~iSAk~~~gi~  151 (161)
T d2gj8a1          80 QADRVLFMVDGTTTDAVDPAEIWPEFIAR-LPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGEGVD  151 (161)
T ss_dssp             TCSEEEEEEETTTCCCCSHHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCTTHH
T ss_pred             hccccceeeccccccchhhhhhhhhhhhh-cccccceeeccchhhhhhhHHH-------HHHhCCCcEEEEECCCCCCHH
Confidence            99999999999988777666665544443 3457999999999998544321       122345799999999999999


Q ss_pred             HHhhcCCCC
Q 030880          161 VCLMLHPNT  169 (170)
Q Consensus       161 ~~~~~l~~~  169 (170)
                      +++++|++.
T Consensus       152 ~L~~~l~~~  160 (161)
T d2gj8a1         152 VLRNHLKQS  160 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=5.1e-26  Score=148.39  Aligned_cols=154  Identities=14%  Similarity=0.065  Sum_probs=102.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc-------cccchhhhcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF-------RSLIPSYIRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-------~~~~~~~~~~~~   83 (170)
                      +|+++|.+++|||||+|+|++........+..+...... .........+.+|||||....       .......+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLG-VVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEE-EEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeec-eeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            589999999999999999987654322222222222221 222333457899999994321       112234467899


Q ss_pred             EEEEEEeCCCh--hhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880           84 VAVVVYDVASR--QSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus        84 ~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .+++++|....  +.+.....|+....... .+.|+++|+||+|+..+..  .++..+.....+.+++.+||++|.|+++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~  158 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPA  158 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHH
Confidence            99999998654  33444444444432222 3579999999999965543  2445555666788999999999999999


Q ss_pred             HhhcCCC
Q 030880          162 CLMLHPN  168 (170)
Q Consensus       162 ~~~~l~~  168 (170)
                      +++.|.+
T Consensus       159 L~~~i~~  165 (180)
T d1udxa2         159 LKEALHA  165 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.4e-25  Score=147.28  Aligned_cols=153  Identities=19%  Similarity=0.205  Sum_probs=104.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|++|||||||++++.   +...+.||.+.....  +  ......+.+||++|++.+...+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~--~--~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYD--F--EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEE--E--EETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEE--E--eeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            5899999999999999999994   344566777754432  3  33457899999999999999999999999999999


Q ss_pred             EeCCChh----------hHHhHHHHHHHHHH-hcCCCCeEEEEEeCCCCCCcc----------------ccCHHHHHHHH
Q 030880           89 YDVASRQ----------SFLNTSKWIDEVRT-ERGSDVIIVLVGNKTDLVEKR----------------QVSIEEGEAKS  141 (170)
Q Consensus        89 ~d~~~~~----------s~~~~~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~~----------------~~~~~~~~~~~  141 (170)
                      ||.++..          .+++...++..+.. ....++|+++++||+|+.++.                .-..+.+..+.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  154 (200)
T d1zcba2          75 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL  154 (200)
T ss_dssp             EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred             EEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHH
Confidence            9998743          34454455555433 334789999999999974310                11223333332


Q ss_pred             hh-----------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          142 RE-----------LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       142 ~~-----------~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .+           ..+.++++||+++.||+++|+.+.+
T Consensus       155 ~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d  192 (200)
T d1zcba2         155 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKD  192 (200)
T ss_dssp             HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHH
Confidence            21           1345678999999999999987643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.91  E-value=1.1e-24  Score=141.88  Aligned_cols=158  Identities=17%  Similarity=0.134  Sum_probs=101.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCccccee-----eeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATI-----GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRD   81 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~   81 (170)
                      .+.++|+++|.+++|||||+|+|++.........+.     +................+.++|+||+..+.......+..
T Consensus         3 ~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~   82 (179)
T d1wb1a4           3 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI   82 (179)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred             CCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhh
Confidence            567899999999999999999999643222111111     000111111111233578899999999988888888999


Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHhh----cCCeEEEEecCC
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRE----LNVMFIETSAKA  155 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~----~~~~~~~~s~~~  155 (170)
                      +|++++++|+++....+. ...+..+..   .++|+++|+||+|+.+.....  .+..+.+.+.    .+.+++++||++
T Consensus        83 ~d~~ilv~d~~~g~~~~~-~~~~~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          83 IDLALIVVDAKEGPKTQT-GEHMLILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             CCEEEEEEETTTCSCHHH-HHHHHHHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             ccccccccccccccchhh-hhhhhhhhh---cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            999999999987533222 112222222   468999999999997543221  1122222221    235899999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      |+|++++++.|.+
T Consensus       159 g~gi~eL~~~I~~  171 (179)
T d1wb1a4         159 GFGVDELKNLIIT  171 (179)
T ss_dssp             CTTHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHh
Confidence            9999999998864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.7e-24  Score=139.97  Aligned_cols=150  Identities=19%  Similarity=0.146  Sum_probs=93.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchhhhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYIR   80 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~~   80 (170)
                      .|+++|++|+|||||+++|++...... ..+..+.....  .........+.+||++|....         .......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   79 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQ--DTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   79 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSE--EEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeecccc--ccccccccccccccccceeeeeccccccccccccccccc
Confidence            689999999999999999997654321 12222212222  223334467899999993221         223344467


Q ss_pred             CCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChH
Q 030880           81 DSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIK  160 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  160 (170)
                      .+|+++++.|.+....... ..++..+...   ++|+++|+||+|+.++.  ..+...++.+.....++++||++|.|++
T Consensus        80 ~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid  153 (171)
T d1mkya1          80 EADLVLFVVDGKRGITKED-ESLADFLRKS---TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLD  153 (171)
T ss_dssp             TCSEEEEEEETTTCCCHHH-HHHHHHHHHH---TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHH
T ss_pred             cCcEEEEeecccccccccc-cccccccccc---cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHH
Confidence            8999999999876544322 3333444432   58999999999986432  1222233333334477999999999999


Q ss_pred             HHhhcCCC
Q 030880          161 VCLMLHPN  168 (170)
Q Consensus       161 ~~~~~l~~  168 (170)
                      +++++|.+
T Consensus       154 ~L~~~i~~  161 (171)
T d1mkya1         154 TMLETIIK  161 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998865

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=6.8e-23  Score=134.01  Aligned_cols=158  Identities=22%  Similarity=0.227  Sum_probs=100.3

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc------------
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF------------   71 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~------------   71 (170)
                      +....+||+++|.+++|||||+|+|++..... ...+..+...........+  ..+.++|+||....            
T Consensus         4 ~~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           4 EITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG--RKYVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             CCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT--EEEEESSCSCC-----------CCSC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCC--ceeeeeccCCccccccccccccccch
Confidence            33456999999999999999999999865421 1122222233333344444  45788899985432            


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhh----c-CC
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRE----L-NV  146 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~-~~  146 (170)
                      .......++.+|++++++|++.+..- ....++..+..   .+.|+++++||+|+.........+......+    . ..
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~-~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITR-QDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCH-HHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTS
T ss_pred             hHHHHHHHhcCCEEEEeecccccchh-hHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCC
Confidence            22334446789999999999865332 12223333322   4589999999999875554444444333322    2 35


Q ss_pred             eEEEEecCCCCChHHHhhcCCC
Q 030880          147 MFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       147 ~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +++.+||++|.|++++++.|.+
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~  179 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNL  179 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHH
Confidence            8999999999999999998753

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.8e-24  Score=138.32  Aligned_cols=149  Identities=20%  Similarity=0.222  Sum_probs=100.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC-CcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc---------ccchhhh
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR---------SLIPSYI   79 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   79 (170)
                      +||+++|.+++|||||+|+|++.... ....+..+...........+  ..+.+||+||.....         ......+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQEI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCC--eeEEeccccccccCCccHHHHHHHHHHHHHH
Confidence            68999999999999999999976532 22233333333333344444  578899999943211         1122236


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCCh
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNI  159 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  159 (170)
                      +++|++++|+|++++...+...-+. .+     ...++++++||.|+.+..  ..++.... ...+.+++.+||++|.|+
T Consensus        79 ~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~~~~--~~~~~~~~-~~~~~~~~~vSA~~g~gi  149 (160)
T d1xzpa2          79 EKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVVEKI--NEEEIKNK-LGTDRHMVKISALKGEGL  149 (160)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSCCCC--CHHHHHHH-HTCSTTEEEEEGGGTCCH
T ss_pred             HhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeeccccchh--hhHHHHHH-hCCCCcEEEEECCCCCCH
Confidence            7899999999999886654433221 11     357889999999986543  33333322 234568999999999999


Q ss_pred             HHHhhcCCCC
Q 030880          160 KVCLMLHPNT  169 (170)
Q Consensus       160 ~~~~~~l~~~  169 (170)
                      ++++++|.++
T Consensus       150 ~~L~~~I~ke  159 (160)
T d1xzpa2         150 EKLEESIYRE  159 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999988654

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.1e-22  Score=135.10  Aligned_cols=117  Identities=22%  Similarity=0.330  Sum_probs=87.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc-ccchhhhcCCcEEEEEE
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-SLIPSYIRDSSVAVVVY   89 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-~~~~~~~~~~~~~i~v~   89 (170)
                      +|+++|++++|||||+++|+++.+... .++.+.+...... .......+.+||++|++.+. ..+..+++.++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEEC-SSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEE-eeeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999999999999887654 3444434333222 24556789999999998875 56778889999999999


Q ss_pred             eCCChhh-HHhHHHHHHHHHH-h--cCCCCeEEEEEeCCCCCCc
Q 030880           90 DVASRQS-FLNTSKWIDEVRT-E--RGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        90 d~~~~~s-~~~~~~~~~~~~~-~--~~~~~p~ivv~nK~D~~~~  129 (170)
                      |+++..+ +.....++..+.. .  ...++|++|++||+|+..+
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a  123 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA  123 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCC
Confidence            9998765 3455555544432 2  2356899999999999754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.89  E-value=1.1e-23  Score=137.56  Aligned_cols=146  Identities=21%  Similarity=0.246  Sum_probs=92.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------------cccc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------------RSLI   75 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------------~~~~   75 (170)
                      .|+++|.+|+|||||+|+|++........+..+.+..  .....    .+.++||||....               ....
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~--~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKII--EIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCE--EEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeeccc--ccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            5899999999999999999987654443443332322  12222    3578999994211               1122


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHH----------HHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTS----------KWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN  145 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~  145 (170)
                      ...++.+|++++|+|...+.......          ..+..+.   ..++|+++|+||+|+.+..+..   ...+.+..+
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~---~~~~p~iiv~NK~D~~~~~~~~---~~~~~~~~~  149 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLR---ELDIPTIVAVNKLDKIKNVQEV---INFLAEKFE  149 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHH---HTTCCEEEEEECGGGCSCHHHH---HHHHHHHHT
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHH---HcCCCEEEEEeeeehhhhHHHH---HHHHHHHhc
Confidence            34467899999999987543222211          1122222   2469999999999986443221   122222221


Q ss_pred             -------CeEEEEecCCCCChHHHhhcCCC
Q 030880          146 -------VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       146 -------~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                             ..++++||++|.|+++++++|.+
T Consensus       150 ~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~  179 (184)
T d2cxxa1         150 VPLSEIDKVFIPISAKFGDNIERLKNRIFE  179 (184)
T ss_dssp             CCGGGHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             ccccccCCeEEEEECCCCCCHHHHHHHHHH
Confidence                   25889999999999999998754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=2.6e-23  Score=139.45  Aligned_cols=152  Identities=18%  Similarity=0.187  Sum_probs=108.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV   88 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   88 (170)
                      .+||+++|+.|+|||||++++..+.+    .||.+....  .+...  .+++.+||++|++.++..|..+++++++++++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~--~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFET--KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEE--EEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEE--EEEEC--cEEEEEEecCccceeccchhhhcccccceEEE
Confidence            57999999999999999999976543    455554332  23333  47899999999999999999999999999999


Q ss_pred             EeCCCh----------hhHHhHHHHHHHHHHh-cCCCCeEEEEEeCCCCCCccc----c---------------------
Q 030880           89 YDVASR----------QSFLNTSKWIDEVRTE-RGSDVIIVLVGNKTDLVEKRQ----V---------------------  132 (170)
Q Consensus        89 ~d~~~~----------~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~----~---------------------  132 (170)
                      +|.++.          ..+.+...++..+... ...++|++|++||+|+.++..    .                     
T Consensus        78 ~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~  157 (221)
T d1azta2          78 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE  157 (221)
T ss_dssp             EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCC
T ss_pred             EEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCccccccc
Confidence            999853          2344444444444333 337899999999999853210    0                     


Q ss_pred             -----CHHHHHHHHh-----h--------cCCeEEEEecCCCCChHHHhhcCCC
Q 030880          133 -----SIEEGEAKSR-----E--------LNVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       133 -----~~~~~~~~~~-----~--------~~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                           ...++..+.+     .        ..+-.+.+||.++.+|+.+|+.+.+
T Consensus       158 ~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d  211 (221)
T d1azta2         158 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRD  211 (221)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHH
Confidence                 1223333221     1        1244678999999999999987643

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.88  E-value=2.6e-22  Score=132.17  Aligned_cols=161  Identities=18%  Similarity=0.140  Sum_probs=105.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc---ccc--e--eeeEEEEEEE-----------------EECCeEEEEE
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT---YQA--T--IGIDFLSKTM-----------------YLEDRTVRLQ   61 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~---~~~--~--~~~~~~~~~~-----------------~~~~~~~~~~   61 (170)
                      ..+.+||+++|..++|||||+++|++......   ...  +  .+........                 ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            34568999999999999999999986432111   011  0  1111111100                 0012345799


Q ss_pred             EEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc--CHHHHHH
Q 030880           62 LWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV--SIEEGEA  139 (170)
Q Consensus        62 i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~  139 (170)
                      ++|+||+..|.......+..+|++++++|+.+........+.+..+....  ..+++++.||+|+.+....  ...+...
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~~~~~~~  159 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIKE  159 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHHHHHHHH
Confidence            99999999999888888999999999999887532223333333333332  2457888999998765322  2334445


Q ss_pred             HHhhcC---CeEEEEecCCCCChHHHhhcCCC
Q 030880          140 KSRELN---VMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       140 ~~~~~~---~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      +....+   ++++++||++|+|++++++.+.+
T Consensus       160 ~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~  191 (195)
T d1kk1a3         160 FIEGTVAENAPIIPISALHGANIDVLVKAIED  191 (195)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HhccccCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            554443   58999999999999999987654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=9.8e-24  Score=137.99  Aligned_cols=153  Identities=20%  Similarity=0.097  Sum_probs=94.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccccc----ccc---hhhhcCCc
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR----SLI---PSYIRDSS   83 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~----~~~---~~~~~~~~   83 (170)
                      +|+++|++++|||||+|+|++........+..+.+......... ....+.+|||||..+..    ...   ...+..++
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR   81 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhh
Confidence            68999999999999999998765432222222222222222222 23368899999953221    111   22345788


Q ss_pred             EEEEEEeCCChhhHHh--HHHHHHHHHHh---cCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhc--CCeEEEEecCCC
Q 030880           84 VAVVVYDVASRQSFLN--TSKWIDEVRTE---RGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSREL--NVMFIETSAKAG  156 (170)
Q Consensus        84 ~~i~v~d~~~~~s~~~--~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~  156 (170)
                      .++++++.........  ...+.......   ...++|+++|+||+|+.+..    +....+.+.+  +.+++.+||++|
T Consensus        82 ~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~iSA~~g  157 (185)
T d1lnza2          82 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAVTR  157 (185)
T ss_dssp             EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             hhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEEEECCCC
Confidence            8888887765432222  11111222222   22568999999999996543    2233333333  578899999999


Q ss_pred             CChHHHhhcCCC
Q 030880          157 FNIKVCLMLHPN  168 (170)
Q Consensus       157 ~~i~~~~~~l~~  168 (170)
                      .|++++++.|.+
T Consensus       158 ~Gi~~L~~~i~~  169 (185)
T d1lnza2         158 EGLRELLFEVAN  169 (185)
T ss_dssp             STTHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence            999999988753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2e-22  Score=132.77  Aligned_cols=152  Identities=13%  Similarity=0.117  Sum_probs=89.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------------cc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------------LI   75 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------------~~   75 (170)
                      -.+|+++|.+|+|||||+|+|++...........+.+..........   .+.+.|+++......             ..
T Consensus        23 ~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   99 (195)
T d1svia_          23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETY   99 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchhhhHHhhh
Confidence            34899999999999999999997653222122111111112122222   344566666322111             12


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHH----hhcCCeEEEE
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKS----RELNVMFIET  151 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~~~~~~~~~  151 (170)
                      ......++++++++|++++..- ....+++.+..   .++|+++|+||+|+.+..... +......    ...+.+++.+
T Consensus       100 ~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         100 ITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEEC
T ss_pred             hccccchhhhhhhhhccccccc-ccccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEE
Confidence            2334567999999998765331 22333344433   358999999999986544332 2222222    2344689999


Q ss_pred             ecCCCCChHHHhhcCCC
Q 030880          152 SAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       152 s~~~~~~i~~~~~~l~~  168 (170)
                      ||++|.|+++++++|.+
T Consensus       175 SA~~~~gi~el~~~i~~  191 (195)
T d1svia_         175 SSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             CTTTCTTHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHH
Confidence            99999999999998765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.87  E-value=1.9e-22  Score=135.74  Aligned_cols=152  Identities=19%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeE--EEEE--------------EEEECCeEEEEEEEeCCCcccccccc
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQATIGID--FLSK--------------TMYLEDRTVRLQLWDTAGQERFRSLI   75 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~i~D~~g~~~~~~~~   75 (170)
                      |+++|.+++|||||+++|++...........+..  ....              ..........+.++||||+..|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            9999999999999999998742211100000000  0000              01112334578999999999998888


Q ss_pred             hhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCH--------------------H
Q 030880           76 PSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSI--------------------E  135 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------------------~  135 (170)
                      ...+..+|++|+|+|+.+.-.... ...+..+..   .++|+++++||+|+........                    .
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  163 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT-QEALNILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT  163 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred             hhcccccceEEEEEecccCcccch-hHHHHHhhc---CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHHH
Confidence            888999999999999986522222 222222222   4689999999999865432110                    0


Q ss_pred             HH----HHHHhh--------------cCCeEEEEecCCCCChHHHhhcCC
Q 030880          136 EG----EAKSRE--------------LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       136 ~~----~~~~~~--------------~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ..    ..+...              ..++++.+|+++|.|++++++.|.
T Consensus       164 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~  213 (227)
T d1g7sa4         164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLM  213 (227)
T ss_dssp             HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHH
Confidence            00    111110              014789999999999999998763

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=6.5e-22  Score=131.17  Aligned_cols=161  Identities=16%  Similarity=0.125  Sum_probs=102.0

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCccc---ce--eeeEEEEEEEEE------------------------CCe
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQ---AT--IGIDFLSKTMYL------------------------EDR   56 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~---~~--~~~~~~~~~~~~------------------------~~~   56 (170)
                      ..+.+||+++|..++|||||+++|++........   ..  ............                        ...
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            3456899999999999999999998632211000   00  000000000000                        112


Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--H
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--I  134 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~  134 (170)
                      ..++.++|+||+..|.......+..+|++|+|+|+.+.-.-...+..+..+...  ...|++|+.||+|+.+.....  .
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~--~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII--GVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT--TCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc--CCceeeeccccCCCccchHHHHHH
Confidence            347899999999999888888889999999999998652111222222322222  225788899999997543221  2


Q ss_pred             HHHHHHHhhc---CCeEEEEecCCCCChHHHhhcCCC
Q 030880          135 EEGEAKSREL---NVMFIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       135 ~~~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      .+...+....   +++++++||++|.|++++++.|.+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~  199 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEE  199 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHh
Confidence            2333333333   368999999999999999987644

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.85  E-value=6.9e-22  Score=129.70  Aligned_cols=155  Identities=14%  Similarity=0.058  Sum_probs=103.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC----------------CCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD----------------KFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      +.+||+++|..++|||||+++|++.                ....+..  .+.+..............+.++|+||+..|
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~--rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f   79 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERA--RGITINAAHVEYSTAARHYAHTDCPGHADY   79 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEE--TTEEEECEEEEEECSSCEEEEEECSSHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcC--CCccCCcceEEEEeceeeEEeecCcchHHH
Confidence            4589999999999999999999751                1111111  122233333334444568999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc---CHHHHHHHHhhcC---
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV---SIEEGEAKSRELN---  145 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~---  145 (170)
                      .......+..+|++++|+|+.+.-.- ..++.+..+...  ...|+||+.||+|+.+..+.   ...+...+...++   
T Consensus        80 ~~~~~~~~~~aD~allVVda~~G~~~-QT~~~~~~a~~~--~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  156 (196)
T d1d2ea3          80 VKNMITGTAPLDGCILVVAANDGPMP-QTREHLLLARQI--GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG  156 (196)
T ss_dssp             HHHHHHTSSCCSEEEEEEETTTCSCH-HHHHHHHHHHHT--TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhcCeEEEEEEcCCCCch-hHHHHHHHHHHh--cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCc
Confidence            88888889999999999999865221 122333333222  23578889999998653321   1223444444443   


Q ss_pred             --CeEEEEecCCC----------CChHHHhhcCC
Q 030880          146 --VMFIETSAKAG----------FNIKVCLMLHP  167 (170)
Q Consensus       146 --~~~~~~s~~~~----------~~i~~~~~~l~  167 (170)
                        ++++.+|+++|          .++.++++.|.
T Consensus       157 ~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~  190 (196)
T d1d2ea3         157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVD  190 (196)
T ss_dssp             TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHH
T ss_pred             ccCEEEEEEccccccccCcccccCCHHHHHHHHH
Confidence              57999999998          58888887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=3.6e-20  Score=120.12  Aligned_cols=154  Identities=16%  Similarity=0.184  Sum_probs=97.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCeEEEEEEEeCCCcccc---------cccchhhh
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF---------RSLIPSYI   79 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~---------~~~~~~~~   79 (170)
                      -.|+++|.+|+|||||+|+|++....... .+...............  ..+..+|++|....         ........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA--YQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT--EEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCC--ceeEeecCCCceecchhhhhhhhhhccccch
Confidence            35899999999999999999986543222 22222122222222222  35667888874321         11223334


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC-CeEEEEecCCCCC
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN-VMFIETSAKAGFN  158 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  158 (170)
                      ..+++++++.|.++.....  ..+...+.   ....|.++++||.|..............+..+++ .+++++||++|.|
T Consensus        84 ~~~~~~l~~~d~~~~~~~~--~~~~~~l~---~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~g  158 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDD--EMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLN  158 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHH--HHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTT
T ss_pred             hhcceeEEEEecCccchhH--HHHHHHhh---hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCC
Confidence            5678888888876543221  22222222   2457889999999987654444455666666666 4899999999999


Q ss_pred             hHHHhhcCCCCC
Q 030880          159 IKVCLMLHPNTV  170 (170)
Q Consensus       159 i~~~~~~l~~~i  170 (170)
                      ++++++.|++.+
T Consensus       159 i~~L~~~i~~~l  170 (179)
T d1egaa1         159 VDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            999999987653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.82  E-value=1.4e-19  Score=120.78  Aligned_cols=156  Identities=17%  Similarity=0.179  Sum_probs=99.5

Q ss_pred             CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCC--CCc-----------------------------ccceeeeEEEEEE
Q 030880            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKF--DNT-----------------------------YQATIGIDFLSKT   50 (170)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~--~~~-----------------------------~~~~~~~~~~~~~   50 (170)
                      .+++....+||+++|...+|||||+++|+....  ...                             .....+.+.....
T Consensus         2 ~~~~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~   81 (222)
T d1zunb3           2 GQHERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAY   81 (222)
T ss_dssp             CSTTSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEE
T ss_pred             cccccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeE
Confidence            456667789999999999999999999974211  000                             0000011111111


Q ss_pred             EEECCeEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCc
Q 030880           51 MYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEK  129 (170)
Q Consensus        51 ~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~  129 (170)
                      ........++.++|+||+..|..........+|++++|+|+...-.-+ ....+..+ ..  .+++ ++++.||+|+.+.
T Consensus        82 ~~~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q-t~e~~~~~-~~--~gv~~iiv~vNK~D~~~~  157 (222)
T d1zunb3          82 RYFSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIA-SL--LGIKHIVVAINKMDLNGF  157 (222)
T ss_dssp             EEEECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHH-HH--TTCCEEEEEEECTTTTTS
T ss_pred             EEEeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc-hHHHHHHH-HH--cCCCEEEEEEEccccccc
Confidence            122233467999999999999998888899999999999998652221 11221222 22  3454 7888999999764


Q ss_pred             cccC----HHHHHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880          130 RQVS----IEEGEAKSRELN-----VMFIETSAKAGFNIKV  161 (170)
Q Consensus       130 ~~~~----~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (170)
                      .+..    ..+...+.+..+     ++++++||++|.|+.+
T Consensus       158 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         158 DERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             cceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            3322    233445555554     3789999999999854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=5.1e-20  Score=122.12  Aligned_cols=115  Identities=17%  Similarity=0.246  Sum_probs=81.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccchhh----hcCCcE
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY----IRDSSV   84 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~----~~~~~~   84 (170)
                      +.+|+++|++++|||||+|+|+++.+.+    +.+......  .....+..+.+||+||++.+...+..+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~----~tt~~~~~~--~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLS--AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC----BCCCSSCEE--ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC----eEEecceEE--EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4589999999999999999999877543    222222222  233445578899999998776655544    345688


Q ss_pred             EEEEEeCCC-hhhHHhHHHHHHH----HHHhcCCCCeEEEEEeCCCCCCc
Q 030880           85 AVVVYDVAS-RQSFLNTSKWIDE----VRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        85 ~i~v~d~~~-~~s~~~~~~~~~~----~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      +++++|..+ ..+++....|+..    +......++|+++++||+|+.+.
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            899998764 4566665555543    34445578999999999998654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=2.3e-19  Score=118.49  Aligned_cols=143  Identities=18%  Similarity=0.138  Sum_probs=91.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC------C--C---------CCcccceeeeEEEEEEEEECCeEEEEEEEeCCCccc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD------K--F---------DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER   70 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~------~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~   70 (170)
                      +.+||+++|..++|||||+++|++.      .  .         +.+.....+.+.....+.  ..+.++.++||||+..
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~--~~~~~i~iiDtPGh~d   79 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE--TAKRHYSHVDCPGHAD   79 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE--CSSCEEEEEECCCSGG
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEE--eCCeEEEEEeCCCchh
Confidence            4589999999999999999999742      0  0         000111222233333333  3446789999999999


Q ss_pred             ccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCcccc---CHHHHHHHHhhcC-
Q 030880           71 FRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQV---SIEEGEAKSRELN-  145 (170)
Q Consensus        71 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~-  145 (170)
                      |.......++.+|++|+|+|+.+.-..+... .+..+..   .++| ++|++||+|+.+..+.   ...++..+....+ 
T Consensus        80 f~~~~~~~~~~aD~avlVvda~~Gv~~qt~~-~~~~~~~---~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~~  155 (204)
T d2c78a3          80 YIKNMITGAAQMDGAILVVSAADGPMPQTRE-HILLARQ---VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  155 (204)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHHHHH-HHHHHHH---TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHHHHCCEEEEEEECCCCCcHHHHH-HHHHHHH---cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcCC
Confidence            9998888999999999999998764433222 2222222   3566 6778999998653321   1233444444332 


Q ss_pred             ----CeEEEEecCCC
Q 030880          146 ----VMFIETSAKAG  156 (170)
Q Consensus       146 ----~~~~~~s~~~~  156 (170)
                          +.++..|+..+
T Consensus       156 ~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         156 PGDEVPVIRGSALLA  170 (204)
T ss_dssp             CTTTSCEEECCHHHH
T ss_pred             Ccccceeeeeechhh
Confidence                47888887644

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.76  E-value=1.4e-17  Score=113.81  Aligned_cols=112  Identities=20%  Similarity=0.265  Sum_probs=78.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCC--CC----------------cccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKF--DN----------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~--~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      -||+++|+.++|||||+.+++....  ..                +.....++......+..  .+.+++++||||+..|
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~--~~~~~n~iDtPG~~dF   84 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDAPGHVDF   84 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEE--TTEEEEEECCCSSSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeecc--CCeEEEEecCCchhhh
Confidence            3799999999999999999975211  00                00111111122222233  3468999999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      .......++.+|++|+|+|+.+.-.....+.| ....   ..++|.++++||+|..
T Consensus        85 ~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~---~~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          85 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAE---KYKVPRIAFANKMDKT  136 (276)
T ss_dssp             STTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHH---TTTCCEEEEEECTTST
T ss_pred             HHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHH---HcCCCEEEEEeccccc
Confidence            99999999999999999999877444444444 3333   2569999999999975

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7e-19  Score=114.50  Aligned_cols=163  Identities=14%  Similarity=0.085  Sum_probs=82.8

Q ss_pred             CCcCCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCeEEEEEEEeCCCcccccc-------c
Q 030880            2 APVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS-------L   74 (170)
Q Consensus         2 ~~~~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~   74 (170)
                      .+.+....++|+++|.+++|||||+|+|++...........+................+...+.++......       .
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRA   88 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhh
Confidence            345567789999999999999999999998765333222211111122222222222222222222111111       1


Q ss_pred             chhh---hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHhhc--CCe
Q 030880           75 IPSY---IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSREL--NVM  147 (170)
Q Consensus        75 ~~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~--~~~  147 (170)
                      ....   ....+.++.+.+........ ...++..+..   ...++++++||+|+.......  .++..+.....  ..+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          89 LGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence            1111   12334455555554432222 2223333332   357889999999986543222  12223333333  348


Q ss_pred             EEEEecCCCCChHHHhhcCCC
Q 030880          148 FIETSAKAGFNIKVCLMLHPN  168 (170)
Q Consensus       148 ~~~~s~~~~~~i~~~~~~l~~  168 (170)
                      ++.+||++|.|++++++.|.+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~  185 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDT  185 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHH
Confidence            899999999999999988753

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=4e-19  Score=119.75  Aligned_cols=150  Identities=17%  Similarity=0.199  Sum_probs=97.1

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC--CCC-----------------------------CcccceeeeEEEEEEEEECC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD--KFD-----------------------------NTYQATIGIDFLSKTMYLED   55 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~   55 (170)
                      .+.+||+++|..++|||||+.+|+..  ...                             .+.....+.+.....+..  
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--   81 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET--   81 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc--
Confidence            34589999999999999999999741  100                             001112222222223333  


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhh---H--H-hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQS---F--L-NTSKWIDEVRTERGSDVI-IVLVGNKTDLVE  128 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~-~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  128 (170)
                      ...+++++|+|||..|...+...+..+|++|+|+|+.....   +  + .....+.....   .++| +|+++||+|+.+
T Consensus        82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~---~gv~~iiv~iNKmD~~~  158 (239)
T d1f60a3          82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMDSVK  158 (239)
T ss_dssp             SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGGGGT
T ss_pred             CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH---cCCCeEEEEEECCCCCC
Confidence            34689999999999999999999999999999999985421   1  0 12222222222   3465 788899999876


Q ss_pred             ccccC----HHHHHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880          129 KRQVS----IEEGEAKSRELN-----VMFIETSAKAGFNIKV  161 (170)
Q Consensus       129 ~~~~~----~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (170)
                      ..+..    ..+...+....+     ++++.+|+..|.|+-+
T Consensus       159 ~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         159 WDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            44322    233444444443     5789999999998754

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.75  E-value=7.1e-19  Score=119.04  Aligned_cols=155  Identities=19%  Similarity=0.247  Sum_probs=84.1

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCC--Cc---------------------------ccceeeeEEEEEEEEECCeEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFD--NT---------------------------YQATIGIDFLSKTMYLEDRTV   58 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~~   58 (170)
                      ..++|+++|..++|||||+.+|+.....  ..                           .....+...............
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            4679999999999999999999641110  00                           000000001011111122335


Q ss_pred             EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHH---hHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccc
Q 030880           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQ  131 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~  131 (170)
                      ++.++|+||+..|..........+|++++|+|+.+..   ++.   .....+..+..   .++| ++++.||+|+.....
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTTSTTCSS
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCCCCccch
Confidence            7999999999999999999999999999999998642   111   12222222222   2354 778889999864321


Q ss_pred             --cC----HHHHHHHHhhc-------CCeEEEEecCCCCChHHHhhc
Q 030880          132 --VS----IEEGEAKSREL-------NVMFIETSAKAGFNIKVCLML  165 (170)
Q Consensus       132 --~~----~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~  165 (170)
                        ..    .++...+.+..       .++++++||++|+||.++++.
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~s  226 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVDS  226 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCCT
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchhc
Confidence              11    12222222222       257999999999999887654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=3.8e-18  Score=114.21  Aligned_cols=152  Identities=20%  Similarity=0.268  Sum_probs=93.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCC--CC-------------------------c--ccceeeeEEEEEEEEECCeEE
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKF--DN-------------------------T--YQATIGIDFLSKTMYLEDRTV   58 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~--~~-------------------------~--~~~~~~~~~~~~~~~~~~~~~   58 (170)
                      +.+||+++|..++|||||+.+|+....  ..                         .  .....+.+.............
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            468999999999999999999964110  00                         0  000011111122222334456


Q ss_pred             EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChh---hHH---hHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcccc
Q 030880           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQ---SFL---NTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQV  132 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  132 (170)
                      .++++|||||..|.......++-+|++|+|+|+.+..   ++.   ...+.+..... . ...++|++.||+|+..+...
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~-~~~~iIv~iNK~D~~~~~~~  159 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-M-GLDQLIVAVNKMDLTEPPYD  159 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-T-TCTTCEEEEECGGGSSSTTC
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-h-CCCceEEEEEcccCCCcccc
Confidence            8999999999999999999999999999999998752   111   12222222211 1 23457888999998643211


Q ss_pred             ------CHHHHHHHHhhcC-----CeEEEEecCCCCChHH
Q 030880          133 ------SIEEGEAKSRELN-----VMFIETSAKAGFNIKV  161 (170)
Q Consensus       133 ------~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  161 (170)
                            ...+...+...++     +.++++|+..|.|+.+
T Consensus       160 ~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         160 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence                  1123333333333     5789999999999854

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.65  E-value=1.1e-15  Score=103.97  Aligned_cols=126  Identities=11%  Similarity=0.075  Sum_probs=77.5

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcCCCCCcc-cceeeeEEEEEEEEECCeEEEEEEEeCCCcccccccc-------hh
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTY-QATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLI-------PS   77 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~-------~~   77 (170)
                      ...+++|+++|.+|+|||||+|.+++....... .+..+...........+  ..+.++||||........       ..
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~  106 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKS  106 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHH
Confidence            346799999999999999999999987654322 22232233344444444  579999999954322111       11


Q ss_pred             h--hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCC--CCeEEEEEeCCCCCCccccC
Q 030880           78 Y--IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGS--DVIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus        78 ~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~  133 (170)
                      +  ....|++++|.+++...--......+..+...++.  -.+++||.||+|...+....
T Consensus       107 ~~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         107 FLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             HTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HHhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            1  23568888998887542112223333444443332  25789999999987655444

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.65  E-value=5.3e-16  Score=105.58  Aligned_cols=112  Identities=15%  Similarity=0.195  Sum_probs=77.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCc------------------ccceeeeEEEEEEEEECCeEEEEEEEeCCCcccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNT------------------YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERF   71 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~   71 (170)
                      -||+++|+.++|||||+.+|+.......                  .....+.......+...+  .+++++||||+..|
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~--~~~n~iDtPGh~dF   80 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYGDF   80 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSGGG
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccc--cceeEEccCchhhh
Confidence            3799999999999999999974211000                  011112222223333344  57899999999999


Q ss_pred             cccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           72 RSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        72 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      .......++.+|++|+|+|+.+.-.......| ..+..   .++|.++++||+|..
T Consensus        81 ~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~-~~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          81 VGEIRGALEAADAALVAVSAEAGVQVGTERAW-TVAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCEEEEEECGGGC
T ss_pred             hhhhhhhhcccCceEEEeeccCCccchhHHHH-Hhhhh---ccccccccccccccc
Confidence            99999999999999999999866444333333 33333   469999999999963

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=7e-16  Score=108.28  Aligned_cols=117  Identities=17%  Similarity=0.242  Sum_probs=79.0

Q ss_pred             CCce-eEEEEcCCCCCHHHHHHHHhcCC--C--------------CCcccceeeeEEEEEEEEE--------------CC
Q 030880            7 LAKY-KLVFLGDQSVGKTSIITRFMYDK--F--------------DNTYQATIGIDFLSKTMYL--------------ED   55 (170)
Q Consensus         7 ~~~~-~i~v~G~~~~GKstli~~l~~~~--~--------------~~~~~~~~~~~~~~~~~~~--------------~~   55 (170)
                      ...+ ||+++|+.++|||||+.+|+...  .              ..+..+..+.......+..              .+
T Consensus        14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~   93 (341)
T d1n0ua2          14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG   93 (341)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred             cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence            3445 59999999999999999997311  0              0111111111111111111              33


Q ss_pred             eEEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCC
Q 030880           56 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLV  127 (170)
Q Consensus        56 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  127 (170)
                      ..+.++++||||+..|.......++-+|++++|+|+.+.-......-|.. ...   .++|+++++||+|..
T Consensus        94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHHH
T ss_pred             cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH---cCCCeEEEEECcccc
Confidence            56789999999999999999999999999999999987644433333322 222   469999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=5e-16  Score=111.88  Aligned_cols=153  Identities=12%  Similarity=0.093  Sum_probs=85.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceee---eEEEEEEEEECCeEEEEEEEeCCCcccccccch-----hhh
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIG---IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP-----SYI   79 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~-----~~~   79 (170)
                      .+++|+++|.+|+|||||+|+|++...........+   .+......... ....+.+|||||.........     ..+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            468999999999999999999998544222111111   11111111112 222578999999654332222     235


Q ss_pred             cCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc-------cccCHH----HH----HHHHhhc
Q 030880           80 RDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK-------RQVSIE----EG----EAKSREL  144 (170)
Q Consensus        80 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~----~~----~~~~~~~  144 (170)
                      ..+|.++++.|..-.+.   -...+..+..   .++|+++|.||+|....       .....+    +.    ....+..
T Consensus       134 ~~~d~~l~~~~~~~~~~---d~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN---DIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGCSEEEEEESSCCCHH---HHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hcceEEEEecCCCCCHH---HHHHHHHHHH---cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            57888888877432221   1223333333   36899999999996311       111111    11    1222233


Q ss_pred             CC---eEEEEecCCC--CChHHHhhcCC
Q 030880          145 NV---MFIETSAKAG--FNIKVCLMLHP  167 (170)
Q Consensus       145 ~~---~~~~~s~~~~--~~i~~~~~~l~  167 (170)
                      ++   +++.+|..+.  .|+.++.+.+.
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~  235 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLI  235 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHH
Confidence            33   6788887653  47777776653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.49  E-value=3e-15  Score=100.94  Aligned_cols=108  Identities=15%  Similarity=-0.041  Sum_probs=63.9

Q ss_pred             EEEEEEeCCCcccccccchhh-----hcCCcEEEEEEeCCC---hhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCc
Q 030880           58 VRLQLWDTAGQERFRSLIPSY-----IRDSSVAVVVYDVAS---RQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEK  129 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  129 (170)
                      ..+.+.|+||+..+.......     ....+.++++.|+..   ++.+.............  ...|.++++||+|+...
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~  172 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSE  172 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccH
Confidence            358899999988754332222     124667888998753   33332222111111111  35889999999998754


Q ss_pred             cccCHH--------H------------------HHHHHh--hcCCeEEEEecCCCCChHHHhhcCC
Q 030880          130 RQVSIE--------E------------------GEAKSR--ELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       130 ~~~~~~--------~------------------~~~~~~--~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ......        .                  .....+  ...++++++||++|+|++++++.|.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~  238 (244)
T d1yrba1         173 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAY  238 (244)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHH
Confidence            221100        0                  000001  1246899999999999999998764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.38  E-value=5.8e-13  Score=92.95  Aligned_cols=99  Identities=10%  Similarity=0.011  Sum_probs=60.4

Q ss_pred             EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHH
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEG  137 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  137 (170)
                      +.+.++.|.|-..-.   .....-+|.+++|..+...+..+..+.   .+...     +=++|+||+|+.+.........
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE~-----aDi~vvNKaD~~~~~~~~~~~~  212 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFEL-----ADMIAVNKADDGDGERRASAAA  212 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHHH-----CSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhh---hHhhh-----hheeeEeccccccchHHHHHHH
Confidence            578888888854322   223456999999999887654433322   22222     2288889999865543322222


Q ss_pred             HHHHhh----------cCCeEEEEecCCCCChHHHhhcCC
Q 030880          138 EAKSRE----------LNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       138 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      ..+...          ...+++.+|+++|+|+++++++|.
T Consensus       213 ~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~  252 (323)
T d2qm8a1         213 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIE  252 (323)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHH
Confidence            222221          234799999999999999998874

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.36  E-value=7.4e-13  Score=92.51  Aligned_cols=98  Identities=16%  Similarity=0.031  Sum_probs=55.7

Q ss_pred             EEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHH
Q 030880           59 RLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEE  136 (170)
Q Consensus        59 ~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~  136 (170)
                      .+.+++|.|...-   -......+|.+++|.++...+..+..+.-+-++   .     -++|+||+|........  ..+
T Consensus       148 d~iliEtvG~gq~---e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~---a-----Di~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQS---ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEV---A-----DLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTH---HHHHHTTCSEEEEEECC------CCCCHHHHHH---C-----SEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeecccccc---chhhhhccceEEEEecCCCchhhhhhchhhhcc---c-----cEEEEEeecccchHHHHHHHHH
Confidence            4666677663321   123456799999998876554444433333222   2     27888999986543221  111


Q ss_pred             HHHHHh-------hcCCeEEEEecCCCCChHHHhhcCC
Q 030880          137 GEAKSR-------ELNVMFIETSAKAGFNIKVCLMLHP  167 (170)
Q Consensus       137 ~~~~~~-------~~~~~~~~~s~~~~~~i~~~~~~l~  167 (170)
                      .....+       ....+++.||+.+|+|++++++.|.
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~  254 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAII  254 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHH
Confidence            121111       1124799999999999999998764

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.33  E-value=1e-11  Score=85.14  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccc---
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER---   70 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~---   70 (170)
                      .++|-++|.|++|||||++++++........|+++.+...-.+.+++.               ...+.++|.||--.   
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~   81 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS   81 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence            479999999999999999999987654444455544433333333322               12588999999322   


Q ss_pred             ----ccccchhhhcCCcEEEEEEeCC
Q 030880           71 ----FRSLIPSYIRDSSVAVVVYDVA   92 (170)
Q Consensus        71 ----~~~~~~~~~~~~~~~i~v~d~~   92 (170)
                          ........++++|+++.|+|+.
T Consensus        82 ~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          82 KGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCccHHHHHHHHhccceEEEeecc
Confidence                1222344578999999999873

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.27  E-value=4.4e-11  Score=82.65  Aligned_cols=87  Identities=17%  Similarity=0.175  Sum_probs=58.2

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCC-CCcccceeeeEEEEEEEEECCe---------------EEEEEEEeCCCccc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKF-DNTYQATIGIDFLSKTMYLEDR---------------TVRLQLWDTAGQER   70 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~   70 (170)
                      ...++|.++|.|+||||||++++++... .....|+++.+.....+.+++.               ...+.+.|.||...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            3568999999999999999999997643 2233455544433333433321               24688999998332


Q ss_pred             -------ccccchhhhcCCcEEEEEEeCCC
Q 030880           71 -------FRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        71 -------~~~~~~~~~~~~~~~i~v~d~~~   93 (170)
                             ........++++|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence                   11223444789999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=5.1e-11  Score=82.39  Aligned_cols=123  Identities=18%  Similarity=0.233  Sum_probs=72.2

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcCCCCC-cccceeeeEEEEEEEE-------E---CC---------------------
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYDKFDN-TYQATIGIDFLSKTMY-------L---ED---------------------   55 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~-------~---~~---------------------   55 (170)
                      ...+|+|+|..++|||||+|.|++..+.+ ...+++..........       .   .+                     
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            34589999999999999999999987533 2233322111111000       0   00                     


Q ss_pred             ------------------eEEEEEEEeCCCcccc-------------cccchhhhcCCcE-EEEEEeCCChhhHHhHHHH
Q 030880           56 ------------------RTVRLQLWDTAGQERF-------------RSLIPSYIRDSSV-AVVVYDVASRQSFLNTSKW  103 (170)
Q Consensus        56 ------------------~~~~~~i~D~~g~~~~-------------~~~~~~~~~~~~~-~i~v~d~~~~~s~~~~~~~  103 (170)
                                        ....+.++|+||....             ..+...|+.+.+. ++++.+++..-+-.....+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                              0124789999994321             1334556667765 4556666655443344444


Q ss_pred             HHHHHHhcCCCCeEEEEEeCCCCCCccccC
Q 030880          104 IDEVRTERGSDVIIVLVGNKTDLVEKRQVS  133 (170)
Q Consensus       104 ~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  133 (170)
                      ...+   .....++++|.||+|..+.....
T Consensus       185 ~~~~---~~~~~r~i~Vltk~D~~~~~~~~  211 (299)
T d2akab1         185 AKEV---DPQGQRTIGVITKLDLMDEGTDA  211 (299)
T ss_dssp             HHHH---CTTCSSEEEEEECGGGSCTTCCC
T ss_pred             HHHh---CcCCCceeeEEeccccccchhhH
Confidence            4433   33446889999999987654443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.17  E-value=6.7e-11  Score=82.06  Aligned_cols=69  Identities=22%  Similarity=0.289  Sum_probs=42.5

Q ss_pred             EEEEEeCCCccc-------------ccccchhhhcCCcEEEEEE-eCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030880           59 RLQLWDTAGQER-------------FRSLIPSYIRDSSVAVVVY-DVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        59 ~~~i~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (170)
                      .+.++|+||...             ...+...|+.+++.+++++ +......-.....+...+   .....++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            577999999432             1235667788999877766 443332222333333333   23446899999999


Q ss_pred             CCCCcc
Q 030880          125 DLVEKR  130 (170)
Q Consensus       125 D~~~~~  130 (170)
                      |.....
T Consensus       209 D~~~~~  214 (306)
T d1jwyb_         209 DLMDKG  214 (306)
T ss_dssp             TSSCSS
T ss_pred             ccccch
Confidence            986543

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=8.2e-11  Score=82.08  Aligned_cols=84  Identities=14%  Similarity=0.125  Sum_probs=45.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCcccceeeeEEEEEEE------E----------------ECCeEEEEEEEeCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTM------Y----------------LEDRTVRLQLWDTAG   67 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~------~----------------~~~~~~~~~i~D~~g   67 (170)
                      ++|.++|.|++|||||+|+|++........|+++.+...-..      .                .......+.++|+||
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG   80 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG   80 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence            589999999999999999999876544444544433211100      0                011335799999999


Q ss_pred             ccc-------ccccchhhhcCCcEEEEEEeCCC
Q 030880           68 QER-------FRSLIPSYIRDSSVAVVVYDVAS   93 (170)
Q Consensus        68 ~~~-------~~~~~~~~~~~~~~~i~v~d~~~   93 (170)
                      --.       ........++++|+++.|+|+.+
T Consensus        81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             --------------CCCSSTTCSEEEEEEETTC
T ss_pred             cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            322       11222334679999999999863

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.70  E-value=2.6e-08  Score=65.34  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=62.5

Q ss_pred             hhcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHh--hcCCeEEEEecC
Q 030880           78 YIRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSR--ELNVMFIETSAK  154 (170)
Q Consensus        78 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~  154 (170)
                      ...+.|.+++|+++.+|+ +...+.+++-....   .++|.+||.||+|+.++...  +....+..  ..+++++.+|++
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~--~~~~~~~~~~~~~~~v~~vSa~   81 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAK   81 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHHH--HHHHHhhcccccceeEEEeccc
Confidence            357899999999998864 45556777665544   36899999999999754322  22333333  234788999999


Q ss_pred             CCCChHHHhhcCCC
Q 030880          155 AGFNIKVCLMLHPN  168 (170)
Q Consensus       155 ~~~~i~~~~~~l~~  168 (170)
                      ++.|++++.+++..
T Consensus        82 ~~~g~~~L~~~l~~   95 (225)
T d1u0la2          82 TGMGIEELKEYLKG   95 (225)
T ss_dssp             TCTTHHHHHHHHSS
T ss_pred             cchhHhhHHHHhcC
Confidence            99999999887754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.69  E-value=1.2e-08  Score=69.41  Aligned_cols=57  Identities=23%  Similarity=0.323  Sum_probs=35.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccceeeeEEEEEEEEECCeEEEEEEEeCCCc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ   68 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~   68 (170)
                      ...++++++|.|++|||||+|+|.+...... ..|..+.+..  .+..+.   .+.++||||-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~--~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccceEEECCcccccccce--EEECCC---CeEEecCCCc
Confidence            4578999999999999999999998765332 2333332222  222222   4889999994

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.66  E-value=4.7e-07  Score=57.10  Aligned_cols=23  Identities=26%  Similarity=0.632  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +||+++|++|+|||||++.+.+.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            58999999999999999998863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.64  E-value=1.4e-08  Score=66.15  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=55.2

Q ss_pred             EEEEEEeCCCcccccc--c----chhh--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCC
Q 030880           58 VRLQLWDTAGQERFRS--L----IPSY--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVE  128 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~--~----~~~~--~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  128 (170)
                      ..+.++||+|...+..  .    ...+  .-+.+-+++|.+++... ..+.....+..    .  +.. -++.||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~~~----~--~~~-~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQA----S--KIG-TIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHH----C--TTE-EEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhhcc----c--Ccc-eEEEecccCCC
Confidence            4789999999644432  1    1111  12467788899887553 33222222221    1  222 35579999743


Q ss_pred             ccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          129 KRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      .    .-.+...+.+.++++..++  +|+++++
T Consensus       168 ~----~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 K----GGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             C----HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c----ccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence            3    4667788888898877777  5877765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=1.1e-08  Score=67.09  Aligned_cols=60  Identities=13%  Similarity=0.031  Sum_probs=34.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCCCccc------ceeeeEEEEEEEEECCeEEEEEEEeCCCccccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQ------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR   72 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~   72 (170)
                      -..+++|++|+|||||+|+|..+.......      ....++.....+..++.   -.++||||..++.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            357899999999999999998754322111      01111122222333332   3589999966543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.62  E-value=5.3e-08  Score=63.47  Aligned_cols=144  Identities=16%  Similarity=0.170  Sum_probs=77.7

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhcCCCCCc-ccce--------------------eeeEEEEEEEEE----------
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMYDKFDNT-YQAT--------------------IGIDFLSKTMYL----------   53 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~~~~~~~-~~~~--------------------~~~~~~~~~~~~----------   53 (170)
                      ++.++.-|+++|++|+||||.+-+|........ ....                    .+...+.....-          
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~   86 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV   86 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence            445667889999999999999887764211000 0000                    111111000000          


Q ss_pred             ---CCeEEEEEEEeCCCcccccccc----hhhh---c-----CCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeE
Q 030880           54 ---EDRTVRLQLWDTAGQERFRSLI----PSYI---R-----DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVII  117 (170)
Q Consensus        54 ---~~~~~~~~i~D~~g~~~~~~~~----~~~~---~-----~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~  117 (170)
                         ....+.+.++||+|...+....    ..+.   .     ..+-.++|.|++.. +.+......+..+      + +-
T Consensus        87 ~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~  159 (213)
T d1vmaa2          87 AHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAV------N-VT  159 (213)
T ss_dssp             HHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHHHHHHHHHHS------C-CC
T ss_pred             HHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhhhhhhhcccc------C-Cc
Confidence               0013468999999954433211    1111   1     14668899998754 2333333332222      1 22


Q ss_pred             EEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          118 VLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       118 ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      -++.+|.|....    .-.+...+...+.++..++  +|+++++
T Consensus       160 ~lI~TKlDe~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         160 GIILTKLDGTAK----GGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             EEEEECGGGCSC----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             eEEEecccCCCc----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            455699996432    2456677777888877776  5777755

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1.7e-07  Score=60.84  Aligned_cols=91  Identities=13%  Similarity=0.120  Sum_probs=53.1

Q ss_pred             EEEEEEeCCCccccccc----ch---hhhc-----CCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030880           58 VRLQLWDTAGQERFRSL----IP---SYIR-----DSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~----~~---~~~~-----~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (170)
                      +.+.++||+|.......    ..   ...+     ..+-.++|.|++.. +........+..+      + +--++.||.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~-~~~lIlTKl  164 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAV------G-LTGITLTKL  164 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHHS------C-CCEEEEECC
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhcc------C-CceEEEeec
Confidence            46899999994432221    11   1122     24678889997754 3343333333322      1 224556999


Q ss_pred             CCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      |....    .-.+...+...++++..++  +|+++++
T Consensus       165 De~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         165 DGTAK----GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TTCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCCC----ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            97433    2446666777888877776  6777754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=6.1e-08  Score=63.71  Aligned_cols=87  Identities=18%  Similarity=0.204  Sum_probs=63.7

Q ss_pred             hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccC--HHHHHHHHhhcCCeEEEEecCC
Q 030880           79 IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVS--IEEGEAKSRELNVMFIETSAKA  155 (170)
Q Consensus        79 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~  155 (170)
                      ..+.|.+++|+++.+|. +...+.+++-....   .+++.+||.||+|+.+.....  .+.........|++++.+|+++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~   84 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD   84 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCC
Confidence            57899999999988774 55566776655433   468899999999997543211  1222333456689999999999


Q ss_pred             CCChHHHhhcCCC
Q 030880          156 GFNIKVCLMLHPN  168 (170)
Q Consensus       156 ~~~i~~~~~~l~~  168 (170)
                      +.|++++.++|..
T Consensus        85 ~~gl~~L~~~l~~   97 (231)
T d1t9ha2          85 QDSLADIIPHFQD   97 (231)
T ss_dssp             HTTCTTTGGGGTT
T ss_pred             hhHHHHHHHhhcc
Confidence            9999999988754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.47  E-value=2.2e-08  Score=65.89  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -..+++|++|+|||||+|+|....
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ceEEEECCCCccHHHHHHhhccHh
Confidence            356799999999999999999753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.43  E-value=3.8e-07  Score=59.10  Aligned_cols=91  Identities=19%  Similarity=0.132  Sum_probs=52.9

Q ss_pred             EEEEEEeCCCcccccccc----hhh---h-----cCCcEEEEEEeCCCh-hhHHhHHHHHHHHHHhcCCCCeEEEEEeCC
Q 030880           58 VRLQLWDTAGQERFRSLI----PSY---I-----RDSSVAVVVYDVASR-QSFLNTSKWIDEVRTERGSDVIIVLVGNKT  124 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~----~~~---~-----~~~~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~  124 (170)
                      +.+.++||+|...+....    ..+   .     ...+-.++|.|++.. +........+..+.      .. -++.||.
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~~------~~-~lI~TKl  161 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAVG------LT-GVIVTKL  161 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHHC------CS-EEEEECT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhccC------Cc-eEEEecc
Confidence            578999999955443221    111   1     145678889998755 44444444444431      22 4556999


Q ss_pred             CCCCccccCHHHHHHHHhhcCCeEEEEecCCCCChHH
Q 030880          125 DLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKV  161 (170)
Q Consensus       125 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  161 (170)
                      |.....    -.+...+...+.++..++  +|++.++
T Consensus       162 Det~~~----G~~l~~~~~~~~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         162 DGTAKG----GVLIPIVRTLKVPIKFVG--VGEGPDD  192 (207)
T ss_dssp             TSSCCC----TTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred             CCCCCc----cHHHHHHHHHCCCEEEEe--CCCChHh
Confidence            975432    335566777778766666  3565543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=8.5e-07  Score=58.23  Aligned_cols=73  Identities=12%  Similarity=0.128  Sum_probs=41.5

Q ss_pred             CCcEEEEEEeCCChhhHHhH-HHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcC--CeEEEEecCCCC
Q 030880           81 DSSVAVVVYDVASRQSFLNT-SKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELN--VMFIETSAKAGF  157 (170)
Q Consensus        81 ~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~  157 (170)
                      ..+.+|.++|+.+....... ..+..++. ..  +   +|++||+|+.++.    +..++..+.++  +++++++ .-..
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~-~A--D---~ivlNK~Dl~~~~----~~~~~~l~~lNP~a~Ii~~~-~g~v  189 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVG-YA--D---RILLTKTDVAGEA----EKLHERLARINARAPVYTVT-HGDI  189 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHH-TC--S---EEEEECTTTCSCT----HHHHHHHHHHCSSSCEEECC-SSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHH-hC--C---cccccccccccHH----HHHHHHHHHHhCCCeEEEee-CCcc
Confidence            35788999998866432222 11222232 22  2   7788999997532    34555555554  5666544 4455


Q ss_pred             ChHHHhh
Q 030880          158 NIKVCLM  164 (170)
Q Consensus       158 ~i~~~~~  164 (170)
                      .++.+|+
T Consensus       190 ~~~~ll~  196 (222)
T d1nija1         190 DLGLLFN  196 (222)
T ss_dssp             CGGGGSC
T ss_pred             CHHHhhC
Confidence            7777664

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=5.1e-07  Score=58.55  Aligned_cols=84  Identities=19%  Similarity=0.133  Sum_probs=49.1

Q ss_pred             EEEEEEeCCCcccccccchh----h--hcCCcEEEEEEeCCChh-hHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCcc
Q 030880           58 VRLQLWDTAGQERFRSLIPS----Y--IRDSSVAVVVYDVASRQ-SFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKR  130 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~----~--~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  130 (170)
                      ..+.++||+|....+.....    +  ..+.+-+++|.|++..+ ..+....+...+    +  +. =++.+|.|.... 
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~~~~~f~~~~----~--~~-~~I~TKlDe~~~-  164 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAFDEKV----G--VT-GLVLTKLDGDAR-  164 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHHHHHHT----C--CC-EEEEECGGGCSS-
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHHHHHHHHhhC----C--CC-eeEEeecCcccc-
Confidence            47899999995544332211    1  23678889999987653 232222222222    1  11 355699996433 


Q ss_pred             ccCHHHHHHHHhhcCCeEEEEe
Q 030880          131 QVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                         .-.+...+...+.++..++
T Consensus       165 ---~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 ---GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             ---CHHHHHHHHHHCCCEEEEC
T ss_pred             ---chHHHHHHHHHCCCEEEEe
Confidence               2556777777888766554

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=1.1e-06  Score=59.41  Aligned_cols=84  Identities=10%  Similarity=0.099  Sum_probs=58.6

Q ss_pred             chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEecC
Q 030880           75 IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAK  154 (170)
Q Consensus        75 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  154 (170)
                      ....++.+|++++|.|+-+|.+..+  ..+..+.    .++|.|+|+||+|+.+...  .++..++.+..+...+.+|+.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~~--~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchHH--HHHHHHHHHhcCCccceeecc
Confidence            3456889999999999988865443  1222222    3689999999999975432  233334445556788999999


Q ss_pred             CCCChHHHhhcC
Q 030880          155 AGFNIKVCLMLH  166 (170)
Q Consensus       155 ~~~~i~~~~~~l  166 (170)
                      ++.|..++.+.+
T Consensus        81 ~~~~~~~~~~~~   92 (273)
T d1puja_          81 NGQGLNQIVPAS   92 (273)
T ss_dssp             TCTTGGGHHHHH
T ss_pred             cCCCccccchhh
Confidence            999988766543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.15  E-value=7.5e-07  Score=55.83  Aligned_cols=27  Identities=19%  Similarity=0.278  Sum_probs=23.7

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++.++|++.|++||||||+.+.|...
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            467799999999999999999998653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.99  E-value=1.4e-06  Score=55.06  Aligned_cols=24  Identities=21%  Similarity=0.414  Sum_probs=21.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-+|+|.|++|+|||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999763

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.99  E-value=2e-06  Score=53.67  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.+|+++|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.98  E-value=2.4e-06  Score=52.33  Aligned_cols=21  Identities=19%  Similarity=0.414  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |++.|++|||||||+++|...
T Consensus         5 Iii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            778999999999999998653

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.98  E-value=2.7e-06  Score=54.44  Aligned_cols=27  Identities=15%  Similarity=0.180  Sum_probs=22.6

Q ss_pred             CCCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            5 SALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         5 ~~~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +..++.-|+++|+|||||||+..+|..
T Consensus         2 ~~~kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           2 EKSKPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            445556789999999999999998875

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2.7e-06  Score=52.95  Aligned_cols=20  Identities=25%  Similarity=0.491  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      ++|+|.+|||||||+++|..
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999985

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.91  E-value=3.5e-06  Score=53.69  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +.+||+++|+|||||||+...|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            568999999999999999998874

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.88  E-value=3.8e-06  Score=53.49  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+++|++.|++||||||+...|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.85  E-value=4.7e-06  Score=52.57  Aligned_cols=22  Identities=23%  Similarity=0.398  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +||+++|+|||||||+...|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998865

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.85  E-value=6.2e-06  Score=52.60  Aligned_cols=26  Identities=15%  Similarity=0.302  Sum_probs=22.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+.++|+++|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999998764

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.80  E-value=6.4e-06  Score=52.10  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++|+++|+|||||||+...|...
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988754

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=7.2e-06  Score=51.76  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=20.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +||+++|+|||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=7.7e-06  Score=51.52  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +||+++|+|||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.75  E-value=8.6e-06  Score=50.64  Aligned_cols=21  Identities=19%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             eE-EEEcCCCCCHHHHHHHHhc
Q 030880           11 KL-VFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i-~v~G~~~~GKstli~~l~~   31 (170)
                      || .|+|.+|||||||+++|..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 5999999999999999975

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.74  E-value=8.7e-06  Score=50.61  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=18.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |++.|++||||||++++|...
T Consensus         5 I~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            788999999999999999753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.73  E-value=1.6e-05  Score=49.88  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=21.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+.=|+++|.+||||||++.++..
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3455688899999999999999864

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.72  E-value=1e-05  Score=51.08  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=21.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .++|+++|++||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            378999999999999999988753

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=1.1e-05  Score=49.63  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +|+++|++||||||+.+.|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999988653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.1e-05  Score=50.64  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      +|++.|++|+|||||+..+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=1.7e-05  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.5

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++.|+++|+|||||||....|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.64  E-value=2.2e-05  Score=48.97  Aligned_cols=25  Identities=16%  Similarity=0.296  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...+-|.++|.+||||||+.+.|..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457788999999999999987764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.63  E-value=1.6e-05  Score=51.18  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .=|+++|.||||||||.++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=1e-05  Score=51.13  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=19.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+++||+|+||+||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            888999999999999999853

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=3e-05  Score=47.66  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=21.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD   35 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~   35 (170)
                      .-|++-|+-|+|||||++.+......
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             eEEEEecCCCccHHHHHHHHHhhccc
Confidence            45778899999999999999875443

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=3.3e-05  Score=52.09  Aligned_cols=61  Identities=15%  Similarity=0.058  Sum_probs=37.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCCCC--Cc-ccceeeeEEEEEEEE-ECCeEEEEEEEeCCCccc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDKFD--NT-YQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQER   70 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~g~~~   70 (170)
                      .=|.++|+.++|||+|+|.|.+....  .. .....+.....+... ..+....+.++||.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            35778999999999999999975431  11 011111223222222 234556789999999543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=1.7e-05  Score=49.23  Aligned_cols=22  Identities=32%  Similarity=0.363  Sum_probs=19.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .||+++|++||||||+.+.|..
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999888754

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.57  E-value=4.1e-05  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.297  Sum_probs=21.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .+|++.|++|||||||++.|+...
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CCEEEEeeccccchHHHHHHhhhc
Confidence            479999999999999999998654

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=3.9e-05  Score=48.90  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=20.7

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..--|+++|+|||||||+...|...
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3445888899999999999999763

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.54  E-value=2.4e-05  Score=49.62  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+|+||+||||+||+++|...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.5e-05  Score=48.46  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=18.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++|++||||||+.+.|...
T Consensus         9 ivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566899999999999998753

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.53  E-value=2.6e-05  Score=48.25  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      +|+++|++|+||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999988754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.8e-05  Score=51.32  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=20.8

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =+++++|++|+|||||++.+.+-.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999988643

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=3e-05  Score=48.92  Aligned_cols=21  Identities=24%  Similarity=0.471  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+++||+|||||||++.|...
T Consensus         5 ivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.50  E-value=2.9e-05  Score=48.75  Aligned_cols=20  Identities=30%  Similarity=0.258  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |++.|++||||||+++.|..
T Consensus         4 I~i~G~~GsGKsT~~~~L~~   23 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAMD   23 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67779999999999998853

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.48  E-value=3.7e-05  Score=49.91  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+.+.|++-||+||||||....|...
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHH
Confidence            45688999999999999999988753

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.48  E-value=3.5e-05  Score=47.92  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |++.|++||||||+.+.|...
T Consensus         7 I~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999988754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.47  E-value=4.7e-05  Score=50.79  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+.-|++.|+||+|||||+..+...
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445899999999999999988763

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3.6e-05  Score=50.42  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -+.++|++|||||||++.+.+-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            4789999999999999988763

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=1.8e-05  Score=50.19  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +..-|.++|.+||||||+.+.|..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            446688899999999999998864

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.46  E-value=4.6e-05  Score=48.91  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCChHHHHHHHHhccc
Confidence            47899999999999999998744

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.43  E-value=4e-05  Score=47.61  Aligned_cols=21  Identities=24%  Similarity=0.425  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |++.|++||||||+.+.|...
T Consensus         6 I~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            555699999999999998764

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=6.3e-05  Score=47.62  Aligned_cols=26  Identities=19%  Similarity=0.218  Sum_probs=21.6

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...++=|.|.|++|||||||.++|..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34556688999999999999998864

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.43  E-value=4.3e-05  Score=48.59  Aligned_cols=20  Identities=20%  Similarity=0.580  Sum_probs=18.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |+++||+||||+||+++|..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.42  E-value=4.1e-05  Score=50.92  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=20.1

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      =.++++|++|||||||++.+.+-
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            36899999999999999988763

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.41  E-value=7e-05  Score=49.45  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      =.++++|++|+|||||++.+.+-
T Consensus        29 e~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999988763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.7e-05  Score=50.57  Aligned_cols=23  Identities=13%  Similarity=0.203  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|++|||||||++.+.+-.
T Consensus        42 ~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhccc
Confidence            58999999999999999887643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=4.8e-05  Score=49.01  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++||+||||+||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            678899999999999999864

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.40  E-value=4.9e-05  Score=49.96  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -++++|+.|+|||||++.+.+-.
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            35689999999999999998743

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.38  E-value=6.1e-05  Score=49.26  Aligned_cols=22  Identities=14%  Similarity=0.244  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            4789999999999999977653

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.37  E-value=5.6e-05  Score=49.70  Aligned_cols=23  Identities=30%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+.++|++|+|||||++.+.+-.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHHcCC
Confidence            47899999999999999888643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.36  E-value=5.7e-05  Score=47.03  Aligned_cols=21  Identities=14%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|+++|++||||||+.+.|..
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            378899999999999998854

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=5.6e-05  Score=51.03  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .++++|+.|+|||||++.+.+-.
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhCCC
Confidence            58899999999999999998643

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.34  E-value=5.9e-05  Score=47.99  Aligned_cols=21  Identities=14%  Similarity=0.349  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |+++|+|||||||+..+|...
T Consensus        11 I~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778999999999999998753

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.34  E-value=5.6e-05  Score=49.60  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++.||||+||||+++.+...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHhc
Confidence            36999999999999999988753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.33  E-value=5.8e-05  Score=49.56  Aligned_cols=24  Identities=21%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.||||+||||+++.+...
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.30  E-value=7.1e-05  Score=49.24  Aligned_cols=23  Identities=22%  Similarity=0.330  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .+.++|+.|+|||||++.+.+-.
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEECCCCChHHHHHHHHhcCC
Confidence            47899999999999999887644

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.29  E-value=4.4e-05  Score=49.89  Aligned_cols=23  Identities=26%  Similarity=0.274  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcCc
Confidence            37899999999999999998744

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=7e-05  Score=49.29  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -+.++|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            4789999999999999988764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00012  Score=46.47  Aligned_cols=26  Identities=31%  Similarity=0.494  Sum_probs=21.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..+-+++++|++|+|||+++..|...
T Consensus        41 ~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          41 RTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCcccHHHHHHHHHH
Confidence            34568999999999999999877653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.24  E-value=8.3e-05  Score=46.73  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=17.8

Q ss_pred             eeEE-EEcCCCCCHHHHHHHHhc
Q 030880           10 YKLV-FLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~-v~G~~~~GKstli~~l~~   31 (170)
                      +||+ +.|.+||||||+++.|..
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~   23 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            3565 569999999999998853

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=6.3e-05  Score=49.34  Aligned_cols=20  Identities=25%  Similarity=0.559  Sum_probs=18.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      +.++|+.|+|||||++.+.+
T Consensus        28 ~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EECBCCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHhC
Confidence            78899999999999999886

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.23  E-value=0.00011  Score=48.33  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+.++|+.|+|||||++.+.+-.
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37889999999999999998754

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.23  E-value=5.2e-05  Score=50.43  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      =+++++|++|||||||++.+.+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999987765

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.19  E-value=0.00016  Score=47.85  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.||+|+|||+|++.+..
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            45699999999999999999875

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.00014  Score=47.88  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      -+.++|+.|+|||||++.+.+-..
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCC
Confidence            367999999999999999987543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=0.00012  Score=47.75  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=19.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++.|++|+||||+++.+...
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            35899999999999999988753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00014  Score=46.81  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.0

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++-|.+.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999998854

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.16  E-value=0.00014  Score=46.17  Aligned_cols=29  Identities=17%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             cCCCCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            4 VSALAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         4 ~~~~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .+..+++-|+|-|..||||||+++.|...
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence            44556788999999999999999988753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.15  E-value=0.00013  Score=48.65  Aligned_cols=22  Identities=14%  Similarity=0.376  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -+.++|+.|+|||||++.+.+-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999998763

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00018  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..+-+++++|++|+|||++++.|...
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999977653

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.14  E-value=0.00016  Score=48.07  Aligned_cols=23  Identities=17%  Similarity=0.218  Sum_probs=20.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCC
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      +.++|+.|+|||||++.+.+-..
T Consensus        33 ~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEECCCCCcHHHHHHHHHCCCc
Confidence            68999999999999999987543

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00025  Score=46.72  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.||+|+||||+++.+...
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999864

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.09  E-value=0.00022  Score=47.28  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-.+++.|++|+|||++++.+...
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999988764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.08  E-value=6.9e-05  Score=49.34  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .+.++|++|||||||++.+.+-.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCc
Confidence            47899999999999999988744

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=0.00017  Score=49.30  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.4

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +-.++++||||+|||.|++.+..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            45799999999999999998875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.05  E-value=0.00024  Score=50.94  Aligned_cols=25  Identities=28%  Similarity=0.515  Sum_probs=21.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+-||+++||+|||||-|+++|..
T Consensus        47 i~ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          47 VTPKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccccEEEECCCCCCHHHHHHHHHH
Confidence            3456999999999999999998864

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.99  E-value=0.0002  Score=47.58  Aligned_cols=21  Identities=33%  Similarity=0.343  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+++.|++|+|||||++++..
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            577889999999999998874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00024  Score=46.07  Aligned_cols=21  Identities=19%  Similarity=0.382  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++++.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            589999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.00025  Score=46.22  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++.||+|+||||+++.+...
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            5899999999999999988753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.92  E-value=0.0002  Score=47.14  Aligned_cols=23  Identities=17%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++++.|++|+||||+++.+...
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            36899999999999999988754

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.91  E-value=0.00028  Score=46.68  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -.+++.|++|+|||+|++.+...
T Consensus        43 ~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHH
Confidence            35999999999999999999863

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00027  Score=45.83  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ++++.|++|+||||+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            5899999999999999998764

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.89  E-value=0.00022  Score=47.57  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      +++.|+||+|||++++.+...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            345699999999999998754

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0003  Score=45.30  Aligned_cols=21  Identities=14%  Similarity=0.251  Sum_probs=17.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |++.|||||||+|+...|...
T Consensus         6 I~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            566799999999999988754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.87  E-value=0.00032  Score=45.14  Aligned_cols=25  Identities=12%  Similarity=0.183  Sum_probs=20.9

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+..-|.+.|.+|||||||.+.|..
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456688999999999999998864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.79  E-value=0.00047  Score=45.82  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      +-.+++.||||+|||++++.+...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            346999999999999999988763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.00049  Score=43.35  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ++=|.+.|.+||||||+++.|..
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            56788999999999999998864

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00041  Score=46.07  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.+++.||||+|||++++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4589999999999999999875

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.64  E-value=0.00058  Score=43.51  Aligned_cols=21  Identities=14%  Similarity=0.324  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -|+|-|..||||||+++.|..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~   22 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSG   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478889999999999998764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.62  E-value=0.00071  Score=47.21  Aligned_cols=25  Identities=24%  Similarity=0.438  Sum_probs=21.5

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .++-+++++||+|+|||-|.++|..
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA~   90 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLAK   90 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHHh
Confidence            4556799999999999999998854

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.00042  Score=48.80  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=20.0

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ..+-+++++|++|+|||++++.|..
T Consensus        41 ~~k~n~llvG~~GvGKtaiv~~la~   65 (387)
T d1qvra2          41 RTKNNPVLIGEPGVGKTAIVEGLAQ   65 (387)
T ss_dssp             SSCCCCEEEECTTSCHHHHHHHHHH
T ss_pred             CCCCCCeEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999875543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.60  E-value=0.00054  Score=45.69  Aligned_cols=24  Identities=21%  Similarity=0.335  Sum_probs=20.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -.|++.|++|+|||+|++.+....
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCcchhHHHHHHHHh
Confidence            459999999999999999997643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.00096  Score=45.41  Aligned_cols=25  Identities=20%  Similarity=0.319  Sum_probs=21.1

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHh
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ...++=|.|.|++|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3456889999999999999988775

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.52  E-value=0.00034  Score=48.18  Aligned_cols=22  Identities=18%  Similarity=0.413  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++++.|++|+|||+|++++..
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            3699999999999999998853

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.47  E-value=0.0011  Score=41.25  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .-|++.|++|+||||+.-.|....
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999988754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.001  Score=42.36  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      =+.+.|++|+|||+|+..+..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            367889999999999998886543

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.42  E-value=0.0012  Score=41.12  Aligned_cols=24  Identities=13%  Similarity=0.342  Sum_probs=20.9

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      .-|++.|++|+||||+.-.|....
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458999999999999999998654

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0011  Score=42.45  Aligned_cols=20  Identities=25%  Similarity=0.290  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |++-|..||||||+++.|..
T Consensus         5 IviEG~dGsGKsT~~~~L~~   24 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVE   24 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66779999999999998764

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0011  Score=42.98  Aligned_cols=23  Identities=13%  Similarity=0.223  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      -+++.|++|+|||+|+..+..+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            36788999999999999987654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.30  E-value=0.0012  Score=44.24  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-|.+.|++|+|||||+..+++.
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            34678999999999999998754

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.27  E-value=0.0016  Score=45.41  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +.-.+++.||||+|||+|...+..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            344789999999999999998875

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0022  Score=43.76  Aligned_cols=22  Identities=27%  Similarity=0.462  Sum_probs=19.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -.++++||+|+|||.|+..+..
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHh
Confidence            3689999999999999998764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.22  E-value=0.0024  Score=42.86  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ..++=|.|.|++|||||||...+.
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHH
Confidence            345778899999999999987663

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.18  E-value=0.0015  Score=42.65  Aligned_cols=24  Identities=17%  Similarity=0.138  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      =++|.|++|+|||+|.-++..+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            367889999999999998876543

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0015  Score=41.83  Aligned_cols=20  Identities=20%  Similarity=0.375  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |++-|..||||||+++.|..
T Consensus         6 I~ieG~dGsGKsT~~~~L~~   25 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVE   25 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            66669999999998887654

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.16  E-value=0.002  Score=39.85  Aligned_cols=26  Identities=15%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcCCC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      ..-|++.|++|+||||+.-.|.....
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            34689999999999999988887643

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.00025  Score=44.84  Aligned_cols=18  Identities=22%  Similarity=0.577  Sum_probs=16.0

Q ss_pred             EEEcCCCCCHHHHHHHHh
Q 030880           13 VFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        13 ~v~G~~~~GKstli~~l~   30 (170)
                      +|+|+.|+|||||+.++.
T Consensus        28 vi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHSCCSHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHH
Confidence            567999999999999875

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.05  E-value=0.0022  Score=45.24  Aligned_cols=21  Identities=14%  Similarity=0.316  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      |++.|++||||||.+..++..
T Consensus       161 iLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhhh
Confidence            889999999999999998874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.0021  Score=40.97  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +=|.+.|..||||||+.+.|..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999987753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.003  Score=40.33  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhc
Q 030880           10 YKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +=|.+.|..||||||+.+.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            4477899999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0012  Score=42.97  Aligned_cols=21  Identities=19%  Similarity=0.401  Sum_probs=18.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .|+|-|+.||||||+++.|..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477789999999999998765

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.94  E-value=0.0013  Score=44.42  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      .+++|+.|+|||++++++.
T Consensus        27 nvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          27 TAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEECCTTTCSTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            3688999999999998773

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.94  E-value=0.0024  Score=41.51  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=19.7

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      --+++.|++|+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            34788899999999999988765

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.89  E-value=0.0015  Score=44.83  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=23.4

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhcCC
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      +..++|.|=|.-|+||||+++.|....
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456889999999999999999997653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.88  E-value=0.0026  Score=43.43  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      +++.|+||+|||.|++.+...
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            455799999999999988753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.86  E-value=0.0026  Score=40.82  Aligned_cols=21  Identities=19%  Similarity=0.358  Sum_probs=19.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      +.+.|++|+|||.|++.+.+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            788999999999999998764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.82  E-value=0.001  Score=44.72  Aligned_cols=20  Identities=15%  Similarity=0.350  Sum_probs=14.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |.|.|.+||||||+.++|..
T Consensus         7 IgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           7 ISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             EEEESCC---CCTHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            89999999999999997753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.76  E-value=0.003  Score=40.92  Aligned_cols=24  Identities=25%  Similarity=0.200  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCCC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYDKF   34 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~~~   34 (170)
                      =++|.|++|+|||+|...+..+..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            367889999999999999986543

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.003  Score=41.06  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -|+|=|..||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            467779999999999998875

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0033  Score=40.14  Aligned_cols=21  Identities=14%  Similarity=0.230  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.69  E-value=0.0034  Score=40.91  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999997754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0036  Score=40.73  Aligned_cols=22  Identities=18%  Similarity=0.212  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 030880           11 KLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -++|.|++|+|||+|..++...
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4778899999999999999864

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.003  Score=44.33  Aligned_cols=19  Identities=16%  Similarity=0.417  Sum_probs=16.5

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      -+++|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999874

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.64  E-value=0.0043  Score=42.58  Aligned_cols=25  Identities=12%  Similarity=0.129  Sum_probs=21.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      ..++|.|=|..|+||||+++.|...
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHH
Confidence            3478999999999999999988764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.45  E-value=0.0044  Score=42.44  Aligned_cols=23  Identities=17%  Similarity=0.280  Sum_probs=20.3

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      -++|.|=|+-|+||||+++.|..
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~   26 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVA   26 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC
T ss_pred             ceEEEEECCcCCCHHHHHHHHHH
Confidence            46799999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.44  E-value=0.0045  Score=39.65  Aligned_cols=20  Identities=20%  Similarity=0.247  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      |++-|..||||||+++.|..
T Consensus         6 I~iEG~DGsGKST~~~~L~~   25 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYK   25 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67789999999999988764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.42  E-value=0.0048  Score=39.62  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -+++.|++|+|||+|+..+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            467889999999999877653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.38  E-value=0.0047  Score=43.70  Aligned_cols=24  Identities=21%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-+++|+|.+|+|||+++..++.+
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHH
Confidence            357999999999999998877643

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.25  E-value=0.006  Score=40.42  Aligned_cols=20  Identities=10%  Similarity=0.348  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      +++.|++|+|||+|+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999887764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=95.14  E-value=0.0043  Score=41.59  Aligned_cols=16  Identities=31%  Similarity=0.476  Sum_probs=13.5

Q ss_pred             eEEEEcCCCCCHHHHH
Q 030880           11 KLVFLGDQSVGKTSII   26 (170)
Q Consensus        11 ~i~v~G~~~~GKstli   26 (170)
                      .++|.|++|+||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            3788999999999754

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.12  E-value=0.0065  Score=38.47  Aligned_cols=25  Identities=32%  Similarity=0.377  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      +++-.+++.||+++|||.|+..+..
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4455688899999999999998765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.94  E-value=0.0084  Score=38.85  Aligned_cols=21  Identities=19%  Similarity=0.237  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      -|.+.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377889999999999998864

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.93  E-value=0.011  Score=40.11  Aligned_cols=21  Identities=33%  Similarity=0.605  Sum_probs=18.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 030880           11 KLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l~~   31 (170)
                      .++++|++|+|||.+++.|..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            578889999999999987754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.93  E-value=0.0061  Score=41.19  Aligned_cols=16  Identities=25%  Similarity=0.559  Sum_probs=13.7

Q ss_pred             eEEEEcCCCCCHHHHH
Q 030880           11 KLVFLGDQSVGKTSII   26 (170)
Q Consensus        11 ~i~v~G~~~~GKstli   26 (170)
                      .++|.|.+|+||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999764

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.92  E-value=0.0081  Score=39.65  Aligned_cols=20  Identities=10%  Similarity=0.167  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      .++.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999987653

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.014  Score=39.00  Aligned_cols=23  Identities=13%  Similarity=0.247  Sum_probs=20.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      =|++++|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            48999999999999999888754

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.014  Score=40.48  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=15.3

Q ss_pred             eEEEEcCCCCCHHHHHHHH
Q 030880           11 KLVFLGDQSVGKTSIITRF   29 (170)
Q Consensus        11 ~i~v~G~~~~GKstli~~l   29 (170)
                      -+++.|++|+|||+++.++
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            3677899999999987543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.37  E-value=0.02  Score=37.86  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=20.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .++-.+.+.|++++|||+|++.+..
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHH
Confidence            3455678889999999999998875

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.81  E-value=0.027  Score=32.43  Aligned_cols=25  Identities=8%  Similarity=0.239  Sum_probs=21.5

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      .-+.|.+.|..|+|||||.+.|...
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988653

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.76  E-value=0.024  Score=35.19  Aligned_cols=29  Identities=21%  Similarity=0.264  Sum_probs=21.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCCCCCcccc
Q 030880           12 LVFLGDQSVGKTSIITRFMYDKFDNTYQA   40 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~~~~~~~~~   40 (170)
                      ++|+|...||||.+..++........|..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~~~~~YiA   30 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDAPQVLYIA   30 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred             EEEECCCCccHHHHHHHHHhcCCCcEEEE
Confidence            58999999999999999975543333333

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.40  E-value=0.17  Score=30.23  Aligned_cols=51  Identities=16%  Similarity=0.150  Sum_probs=31.3

Q ss_pred             hhhhcCCcEEEEEEeCCChh---hH-------HhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           76 PSYIRDSSVAVVVYDVASRQ---SF-------LNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~---s~-------~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      ...++++|++|+.......+   ..       .-++.+...+.++..++.-++++.|-.|.
T Consensus        75 ~~~~~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv  135 (154)
T d1y7ta1          75 KVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANT  135 (154)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhcccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHH
Confidence            34578999999988765331   11       22344555555555455667777777774

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.37  E-value=0.027  Score=36.75  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ...|++.|++|+||+.+.+.+-.
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHHHH
Confidence            45689999999999999988864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=93.31  E-value=0.34  Score=29.58  Aligned_cols=51  Identities=12%  Similarity=0.080  Sum_probs=31.6

Q ss_pred             hhhhcCCcEEEEEEeCCChh--h-HHh-------HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           76 PSYIRDSSVAVVVYDVASRQ--S-FLN-------TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~~--s-~~~-------~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      ...++++|++|++.......  + .+.       .+.....+.++..++..+++++|-.|.
T Consensus        95 ~~~~~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~  155 (175)
T d7mdha1          95 YEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT  155 (175)
T ss_dssp             HHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             hhhccCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHH
Confidence            34477999999998765331  1 111       334445555555556778888887774

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.031  Score=36.85  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 030880           12 LVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~~   32 (170)
                      +.+.|++|+|||+|+-.+...
T Consensus        57 tei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          57 VEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHHH
Confidence            567899999999998877653

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.037  Score=35.83  Aligned_cols=19  Identities=21%  Similarity=0.382  Sum_probs=16.6

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      +++.|+..+||||+++.+.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5778999999999999764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.64  E-value=0.041  Score=35.34  Aligned_cols=19  Identities=16%  Similarity=0.415  Sum_probs=16.7

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 030880           12 LVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~   30 (170)
                      +++.|+..+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6788999999999999664

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.36  E-value=0.051  Score=36.04  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.0

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      =|+.++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            37899999999999998888654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.13  E-value=0.79  Score=28.69  Aligned_cols=77  Identities=17%  Similarity=0.112  Sum_probs=49.8

Q ss_pred             EEEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEE-EEEeCCCCCCccccCHH
Q 030880           57 TVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIV-LVGNKTDLVEKRQVSIE  135 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~  135 (170)
                      .+.+.++|+++.-.  ......+..+|.++++...+ ..++..+.+....+.+   .+.|++ +|.|+.+..+ ......
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~-~~~~~~  183 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD-RDIPPE  183 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT-TCCCHH
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc-chhhhH
Confidence            36789999987543  33445577899999998864 5566666666655544   346654 7789998643 334444


Q ss_pred             HHHHH
Q 030880          136 EGEAK  140 (170)
Q Consensus       136 ~~~~~  140 (170)
                      ..+.+
T Consensus       184 ~~~~~  188 (237)
T d1g3qa_         184 AAEDV  188 (237)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            44443

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=91.82  E-value=0.059  Score=35.28  Aligned_cols=89  Identities=12%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             EEEEEEeCCCccccccc-chhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcC-CCCeE-EEEEeCCCCCCccccCH
Q 030880           58 VRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERG-SDVII-VLVGNKTDLVEKRQVSI  134 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~-ivv~nK~D~~~~~~~~~  134 (170)
                      +.+.++|+|+.-..... .......+|.++++... +..++....+....+..... .+.++ -++.|+.+....    .
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~----~  190 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANE----Y  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC----H
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCc----c
Confidence            57889999874432222 22223457888877776 45666666565555554432 23332 366798876432    3


Q ss_pred             HHHHHHHhhcCCeEEEE
Q 030880          135 EEGEAKSRELNVMFIET  151 (170)
Q Consensus       135 ~~~~~~~~~~~~~~~~~  151 (170)
                      +..+++.+.++.+++.+
T Consensus       191 ~~~~~~~~~~~~~~~~~  207 (269)
T d1cp2a_         191 ELLDAFAKELGSQLIHF  207 (269)
T ss_dssp             HHHHHHHHHHTCCEEEE
T ss_pred             chhhhhHhhcCCeEEEE
Confidence            55666777788765543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=91.64  E-value=0.07  Score=30.97  Aligned_cols=23  Identities=9%  Similarity=0.210  Sum_probs=17.3

Q ss_pred             ceeE-EEEcCCCCCHHHHHHHHhc
Q 030880            9 KYKL-VFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         9 ~~~i-~v~G~~~~GKstli~~l~~   31 (170)
                      ..++ ++.++.|+|||+++-.+..
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4444 6689999999998866554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.53  E-value=0.043  Score=36.99  Aligned_cols=14  Identities=43%  Similarity=0.724  Sum_probs=12.7

Q ss_pred             EEEcCCCCCHHHHH
Q 030880           13 VFLGDQSVGKTSII   26 (170)
Q Consensus        13 ~v~G~~~~GKstli   26 (170)
                      +++|.+|+|||||-
T Consensus        18 lfFGLSGTGKTTLs   31 (313)
T d2olra1          18 VFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEECSTTSSHHHHH
T ss_pred             EEEccCCCCcccce
Confidence            68899999999975

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.12  E-value=0.047  Score=36.90  Aligned_cols=15  Identities=40%  Similarity=0.649  Sum_probs=13.1

Q ss_pred             EEEEcCCCCCHHHHH
Q 030880           12 LVFLGDQSVGKTSII   26 (170)
Q Consensus        12 i~v~G~~~~GKstli   26 (170)
                      -++.|.+|+|||||-
T Consensus        17 alffGLSGTGKTTLs   31 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEEECTTSCHHHHT
T ss_pred             EEEEccCCCCccccc
Confidence            478899999999975

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.10  E-value=0.1  Score=34.43  Aligned_cols=39  Identities=15%  Similarity=0.048  Sum_probs=24.5

Q ss_pred             cEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeE-EEEEeCCC
Q 030880           83 SVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVII-VLVGNKTD  125 (170)
Q Consensus        83 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D  125 (170)
                      +.+++|-.. ++-+..+..+.+..+....   +|+ -+|+||.-
T Consensus       199 t~~~lVt~p-e~~~~~~~~r~~~~l~~~g---i~~~~vVvN~v~  238 (296)
T d1ihua1         199 TRLVLVARL-QKSTLQEVARTHLELAAIG---LKNQYLVINGVL  238 (296)
T ss_dssp             EEEEEEEES-CHHHHHHHHHHHHHHHHHT---CCCEEEEEEEEC
T ss_pred             ceeeEecCc-chhHHHHHHHHHHHHHhcC---CCceEEEEcCCc
Confidence            355666554 4667777877777776543   443 45669963

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.86  E-value=0.055  Score=36.59  Aligned_cols=15  Identities=40%  Similarity=0.647  Sum_probs=13.3

Q ss_pred             EEEEcCCCCCHHHHH
Q 030880           12 LVFLGDQSVGKTSII   26 (170)
Q Consensus        12 i~v~G~~~~GKstli   26 (170)
                      -++.|.+|+|||||-
T Consensus        17 alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLS   31 (323)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEEccCCCCcccce
Confidence            368999999999987

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=90.19  E-value=0.1  Score=34.23  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=15.2

Q ss_pred             ceeEEEE-cCCCCCHHHHHHHH
Q 030880            9 KYKLVFL-GDQSVGKTSIITRF   29 (170)
Q Consensus         9 ~~~i~v~-G~~~~GKstli~~l   29 (170)
                      ..+|+++ |..|+||||+.-.|
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nL   40 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAI   40 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHH
Confidence            3455555 99999999985544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.01  E-value=0.089  Score=32.97  Aligned_cols=24  Identities=4%  Similarity=0.012  Sum_probs=20.8

Q ss_pred             CceeEEEEcCCCCCHHHHHHHHhc
Q 030880            8 AKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         8 ~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      ....+++.|++|+||++++..+..
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988765

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.68  E-value=0.093  Score=34.93  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             ceeEEEEcCCCCCHHHHHHHHhcC
Q 030880            9 KYKLVFLGDQSVGKTSIITRFMYD   32 (170)
Q Consensus         9 ~~~i~v~G~~~~GKstli~~l~~~   32 (170)
                      -=|+.++|.+|+|||+|+..+..+
T Consensus        68 GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          68 GQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             TCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEeecCCCCChHHHHHHHHHh
Confidence            347899999999999998877654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=89.45  E-value=0.13  Score=32.18  Aligned_cols=67  Identities=10%  Similarity=-0.029  Sum_probs=34.0

Q ss_pred             CcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEec
Q 030880           82 SSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSA  153 (170)
Q Consensus        82 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~  153 (170)
                      ...+++|.+...... .........+...  .....-++.|+.+....  ...+-...+.+.++++++.+=.
T Consensus       138 ~~~v~~V~~~~~~~~-~~~~~~~~~~~~~--~~~~~gvv~N~~~~~~~--~~~~~~~~l~~~~gi~vlG~IP  204 (224)
T d1byia_         138 QLPVILVVGVKLGCI-NHAMLTAQVIQHA--GLTLAGWVANDVTPPGK--RHAEYMTTLTRMIPAPLLGEIP  204 (224)
T ss_dssp             TCCEEEEEECSTTHH-HHHHHHHHHHHHT--TCCEEEEEEECCSSCCT--THHHHHHHHHHHSSSCEEEEEC
T ss_pred             cceeeEEEeeccchh-HHHHHHHHHHhcc--CCccEEEEEeCcCCCch--HHHHHHHHHHHHhCCCEEEECC
Confidence            344555556544333 2222233333332  23345677799875332  2334456667778888765433

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.43  E-value=0.13  Score=33.94  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      +.+.|++++|||+|.-.+..
T Consensus        60 tei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          60 TEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEecCCccchHHHHHHHHH
Confidence            56789999999999987765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.35  E-value=0.13  Score=33.83  Aligned_cols=20  Identities=25%  Similarity=0.388  Sum_probs=16.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhc
Q 030880           12 LVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus        12 i~v~G~~~~GKstli~~l~~   31 (170)
                      +.+.|++++|||+|+-.+..
T Consensus        63 ~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          63 IEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEecCCCcHHHHHHHHHHH
Confidence            56789999999999876664

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.92  E-value=0.15  Score=33.69  Aligned_cols=90  Identities=11%  Similarity=0.067  Sum_probs=49.7

Q ss_pred             EEEEEEEeCCCcccccccchhh-hcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhc-CCCCeE-EEEEeCCCCCCccccC
Q 030880           57 TVRLQLWDTAGQERFRSLIPSY-IRDSSVAVVVYDVASRQSFLNTSKWIDEVRTER-GSDVII-VLVGNKTDLVEKRQVS  133 (170)
Q Consensus        57 ~~~~~i~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~-ivv~nK~D~~~~~~~~  133 (170)
                      .+.+.++|+|+.-......... ...++.++++... +..++..+...+..+.... ..+.++ -++.|+.+....    
T Consensus       118 ~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~----  192 (289)
T d2afhe1         118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRE----  192 (289)
T ss_dssp             TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH----
T ss_pred             cCCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhh----
Confidence            3577899998754322222222 2356666666553 4556655555555554433 234554 367798764322    


Q ss_pred             HHHHHHHHhhcCCeEEEE
Q 030880          134 IEEGEAKSRELNVMFIET  151 (170)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~  151 (170)
                      .+....+.+.++..++.+
T Consensus       193 ~~~~~~~~~~~g~~vl~~  210 (289)
T d2afhe1         193 DELIIALANKLGTQMIHF  210 (289)
T ss_dssp             HHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHHHHcCCeEEEE
Confidence            344566777778766543

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=88.80  E-value=0.12  Score=34.22  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=19.6

Q ss_pred             eeEEEEcCCCCCHHHHHHHHhcCC
Q 030880           10 YKLVFLGDQSVGKTSIITRFMYDK   33 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli~~l~~~~   33 (170)
                      =|+.++|.+|+|||+|+..+..+.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ceEeeccCCCCChHHHHHHHHhhh
Confidence            478999999999999998765443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.67  E-value=1.4  Score=25.79  Aligned_cols=50  Identities=16%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             hhhhcCCcEEEEEEeCCCh------hhHHh----HHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           76 PSYIRDSSVAVVVYDVASR------QSFLN----TSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        76 ~~~~~~~~~~i~v~d~~~~------~s~~~----~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      ...++++|++|+.......      +-+..    ++.....+.++. ++.-++++.|-.|.
T Consensus        63 ~~~~~~aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~-p~~iiivvtNPvD~  122 (144)
T d1mlda1          63 PDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISNPVNS  122 (144)
T ss_dssp             HHHHTTCSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSCHHH
T ss_pred             HHHhCCCCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcC-CCeEEEEecCchhh
Confidence            3457899999998764322      11211    344555555553 56777777788874

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.47  E-value=0.18  Score=31.12  Aligned_cols=16  Identities=25%  Similarity=0.279  Sum_probs=13.6

Q ss_pred             eeEEEEcCCCCCHHHH
Q 030880           10 YKLVFLGDQSVGKTSI   25 (170)
Q Consensus        10 ~~i~v~G~~~~GKstl   25 (170)
                      -++++++++|+|||..
T Consensus        24 ~n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLI   39 (200)
T ss_dssp             SCEEEECCTTSCHHHH
T ss_pred             CCeEEEeCCCCcHHHH
Confidence            3688999999999964

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=87.97  E-value=1  Score=27.19  Aligned_cols=55  Identities=16%  Similarity=0.087  Sum_probs=37.9

Q ss_pred             CChhhHHhHHHHHHHHHHhcCCCCeEEEEEeCCCCCCccccCHHHHHHHHhhcCCeEEEEe
Q 030880           92 ASRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETS  152 (170)
Q Consensus        92 ~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s  152 (170)
                      +|+.+++.......++.  ...+.|+|+++.......    ..+++.++++..+++++.+.
T Consensus         3 sd~~~l~~~v~~~~~~l--~~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFI--ANRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHH--TTCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHH--HcCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            45666666544333332  235799999999887543    35889999999999987554

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.59  E-value=0.6  Score=27.66  Aligned_cols=50  Identities=18%  Similarity=0.169  Sum_probs=28.4

Q ss_pred             hhhcCCcEEEEEEeCCChh------hH----HhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           77 SYIRDSSVAVVVYDVASRQ------SF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~~------s~----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      ..++++|++|++-......      -+    .-.+.....+.++.+...-++++.|-+|.
T Consensus        75 ~~~~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~  134 (154)
T d5mdha1          75 IAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT  134 (154)
T ss_dssp             HHTTTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH
T ss_pred             cccCCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH
Confidence            3467889888877654321      12    22344445555555444456666787774

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.77  E-value=0.24  Score=29.08  Aligned_cols=17  Identities=35%  Similarity=0.563  Sum_probs=13.4

Q ss_pred             EEEcCCCCCHHH-HHHHH
Q 030880           13 VFLGDQSVGKTS-IITRF   29 (170)
Q Consensus        13 ~v~G~~~~GKst-li~~l   29 (170)
                      +++||=.||||| |++++
T Consensus         6 ~i~GpMfsGKTteLi~~~   23 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRL   23 (139)
T ss_dssp             EEECSTTSCHHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHHH
Confidence            467999999999 55554

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=86.53  E-value=0.099  Score=30.02  Aligned_cols=16  Identities=25%  Similarity=0.110  Sum_probs=12.9

Q ss_pred             eeEEEEcCCCCCHHHH
Q 030880           10 YKLVFLGDQSVGKTSI   25 (170)
Q Consensus        10 ~~i~v~G~~~~GKstl   25 (170)
                      -++++.+++|+|||..
T Consensus         8 ~~~il~~~tGsGKT~~   23 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRR   23 (140)
T ss_dssp             CEEEECCCTTSSTTTT
T ss_pred             CcEEEEcCCCCChhHH
Confidence            4678889999999943

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.91  E-value=0.11  Score=32.42  Aligned_cols=17  Identities=24%  Similarity=0.286  Sum_probs=14.4

Q ss_pred             eeEEEEcCCCCCHHHHH
Q 030880           10 YKLVFLGDQSVGKTSII   26 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli   26 (170)
                      -++++.+++|+|||+..
T Consensus        41 ~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             SCEEEECSSHHHHHHHH
T ss_pred             CCEEEEcCCCCchhHHH
Confidence            46899999999999753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.63  E-value=2.5  Score=24.70  Aligned_cols=49  Identities=12%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             hhhcCCcEEEEEEeCCCh------hhH----HhHHHHHHHHHHhcCCCCeEEEEEeCCCC
Q 030880           77 SYIRDSSVAVVVYDVASR------QSF----LNTSKWIDEVRTERGSDVIIVLVGNKTDL  126 (170)
Q Consensus        77 ~~~~~~~~~i~v~d~~~~------~s~----~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  126 (170)
                      ..++++|.++++.-....      +-+    .-++...+.+..+. ++.-++++.|=+|.
T Consensus        70 ~~l~daDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPvd~  128 (148)
T d1ldna1          70 DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPVDI  128 (148)
T ss_dssp             GGTTTCSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSHHH
T ss_pred             HHhccceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCccHH
Confidence            347789999987765432      111    11333445555554 55666666677774

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=83.31  E-value=0.19  Score=32.31  Aligned_cols=26  Identities=23%  Similarity=0.331  Sum_probs=20.4

Q ss_pred             CCCceeEEEEcCCCCCHHHHHHHHhc
Q 030880            6 ALAKYKLVFLGDQSVGKTSIITRFMY   31 (170)
Q Consensus         6 ~~~~~~i~v~G~~~~GKstli~~l~~   31 (170)
                      .....+.++.|..|||||-..-+...
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHH
Confidence            44567889999999999988665553

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.39  E-value=0.55  Score=29.42  Aligned_cols=82  Identities=12%  Similarity=-0.008  Sum_probs=46.9

Q ss_pred             EEEEEEeCCCcccccccchhhhcCCcEEEEEEeCCChhhHHhHHHHHHHHHHhcCCCCe-EEEEEeCCCCCCccccCHHH
Q 030880           58 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDVASRQSFLNTSKWIDEVRTERGSDVI-IVLVGNKTDLVEKRQVSIEE  136 (170)
Q Consensus        58 ~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~~~  136 (170)
                      +.+.++|+|+.-.  ......+..+|.++++...+ ..+.....+.+..+.+..   .+ +-++.|+.+.... +   ..
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~~---~~~~~iv~N~~~~~~~-~---~~  179 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG---TKVLGVVVNRITTLGI-E---MA  179 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT---CEEEEEEEEEECTTTH-H---HH
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhcc---cccccccccccccccc-c---ch
Confidence            4578999987542  33444566799999998864 455555555444444433   33 4467799864221 1   22


Q ss_pred             HHHHHhhcCCeEE
Q 030880          137 GEAKSRELNVMFI  149 (170)
Q Consensus       137 ~~~~~~~~~~~~~  149 (170)
                      ...+.+.++.+++
T Consensus       180 ~~~i~~~~~~~~~  192 (232)
T d1hyqa_         180 KNEIEAILEAKVI  192 (232)
T ss_dssp             HHHHHHHTTSCEE
T ss_pred             hhhHHhhcCCeEE
Confidence            2344445566544

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.97  E-value=0.21  Score=32.76  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=18.8

Q ss_pred             CCceeEEEEcCCCCCHHHHHHHHh
Q 030880            7 LAKYKLVFLGDQSVGKTSIITRFM   30 (170)
Q Consensus         7 ~~~~~i~v~G~~~~GKstli~~l~   30 (170)
                      ..+.+-++.|+.|||||-..-...
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~  125 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAI  125 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHH
T ss_pred             cCcceeeeeccccccccHHHHHHH
Confidence            456778999999999998765443

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.05  E-value=0.24  Score=31.59  Aligned_cols=17  Identities=29%  Similarity=0.208  Sum_probs=14.0

Q ss_pred             eeEEEEcCCCCCHHHHH
Q 030880           10 YKLVFLGDQSVGKTSII   26 (170)
Q Consensus        10 ~~i~v~G~~~~GKstli   26 (170)
                      -.+++++++|+|||...
T Consensus        59 ~~~~i~apTGsGKT~~~   75 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFG   75 (237)
T ss_dssp             CCEECCCCBTSCSHHHH
T ss_pred             CCEEEEecCCChHHHHH
Confidence            36889999999999653