Citrus Sinensis ID: 030881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEcccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHccccccccccEEcccccccHHHHHHHccccccccccccccccccEEcccccEEEEEcccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHccccccEEEEEEEccccccEEHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcEEEEEEEcccccccccccHHHHHHHHHHccccEcccccEEEccccccHHHHHHHHHcccccccccEEEccEEEEEcccccEEEcccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mtsqfiqnpesifdlsvkdarghevdlstykgKVLLIVNVASkcgmtnsnyIELSQLYDKYKDQGLEIlafpcnqfgeeepgsndqiADFVCTrfksefpifekidvngehasPLYKLlksgkwgifgdDIQWNFAKFlvdkngqvvdryypttsLLSLEHDIKKLLGLS
Flexible Loop (DISEMBL)
mtsqfiqnpesifdlsvkdARGHEVdlstykgkvLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTtsllslehdikkllgls
Low Complexity Region (SEG)
MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS
Disordered region (IsUnstruct)
***********IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE*****NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK*****
Disordered Region (DISOPRED)
*************DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL*
Disordered Region (DISEMBL)
********PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS
Disordered Region (DISPRO)
*********ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q8LBU2	167	Probable glutathione pero	yes	no	0.964	0.982	0.786	1e-75
Q9LEF0	170	Probable phospholipid hyd	N/A	no	1.0	1.0	0.7	2e-68
O48646	232	Probable phospholipid hyd	no	no	0.952	0.698	0.697	1e-67
Q06652	167	Probable phospholipid hyd	no	no	0.947	0.964	0.732	1e-67
P30708	169	Probable phospholipid hyd	N/A	no	0.994	1.0	0.682	1e-66
O23970	167	Glutathione peroxidase 1	N/A	no	0.958	0.976	0.699	1e-66
Q9FXS3	169	Probable phospholipid hyd	N/A	no	0.994	1.0	0.676	2e-66
O24031	169	Probable phospholipid hyd	N/A	no	0.994	1.0	0.664	8e-66
O23814	171	Probable phospholipid hyd	N/A	no	0.994	0.988	0.650	2e-65
O49069	170	Probable phospholipid hyd	N/A	no	0.994	0.994	0.678	2e-65

>sp|Q8LBU2|GPX8_ARATH Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1

 Score =  281 bits (719), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 149/164 (90%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           + PES+++LS++DA+G+ + LS YK KVLLIVNVASKCGMTNSNY EL++LY++YKD+GL
Sbjct: 4   KEPESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGL 63

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
           EILAFPCNQFG+EEPG+NDQI DFVCTRFKSEFPIF KI+VNGE+ASPLYK LK GKWGI
Sbjct: 64  EILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGI 123

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           FGDDIQWNFAKFLVDKNGQ V RYYPTTS L+LEHDIK LL +S
Sbjct: 124 FGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLLNIS 167

May constitute a glutathione peroxidase-like protective system against oxidative stresses.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 9

>sp|Q9LEF0|GPX4_MESCR Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1

 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 119/170 (70%), Positives = 145/170 (85%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M SQ    P+SI D  VKDARG++VDLS YKGKVLLIVNVAS+CG+TNSNY EL++LY++
Sbjct: 1   MASQSTDQPKSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQ 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKD+GLEILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K+DVNG +A+P+YK LK
Sbjct: 61  YKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           S K G+FGD I+WNF KFLVD++G+VVDRY PTTS  S+E DIKKL+G S
Sbjct: 121 SSKGGLFGDGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIGTS 170

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O48646|GPX6_ARATH Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2

 Score =  255 bits (651), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 113/162 (69%), Positives = 143/162 (88%)

Query: 9   PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI 68
           P+S++D +VKDA+G++VDLS YKGKVLLIVNVAS+CG+TNSNY EL+QLY+KYK  G EI
Sbjct: 70  PKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEI 129

Query: 69  LAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG 128
           LAFPCNQFG +EPG+N++I  F CTRFK+E+PIF+K+DVNG+ A+P+YK LKS K G+FG
Sbjct: 130 LAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFG 189

Query: 129 DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           D I+WNFAKFLVDK+G VVDR+ PTTS LS+E D+KKLLG++
Sbjct: 190 DGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLLGVT 231

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|Q06652|GPX4_CITSI Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1

 Score =  255 bits (651), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 118/161 (73%), Positives = 141/161 (87%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           Q+  S+ D +VKDA+G +VDLS YKGK+LLIVNVAS+CG+TNSNY ELSQLYDKYK+QGL
Sbjct: 4   QSKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGL 63

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
           EILAFPCNQFG +EPG N+QI +F CTRFK+EFPIF+K+DVNG++A+PLYK LKS K G+
Sbjct: 64  EILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGL 123

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           FGD I+WNF+KFLVDK G VV+RY PTTS LS+E DIKKLL
Sbjct: 124 FGDSIKWNFSKFLVDKEGNVVERYAPTTSPLSIEKDIKKLL 164

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Citrus sinensis (taxid: 2711)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|P30708|GPX4_NICSY Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1

 Score =  251 bits (641), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 116/170 (68%), Positives = 146/170 (85%), Gaps = 1/170 (0%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M SQ    P+SI+D +VKDA+G++VDLS YKGKVL+IVNVAS+CG+TNSNY +L+++Y K
Sbjct: 1   MASQ-SSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKK 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIF+K+DVNG++A+PLYK LK
Sbjct: 60  YKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLK 119

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           S K G FGD I+WNF+KFLVDK G VVDRY PTT+  S+E DIKKLLG++
Sbjct: 120 SSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLGVA 169

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Nicotiana sylvestris (taxid: 4096)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O23970|GPX1_HELAN Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1

 Score =  251 bits (641), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 148/163 (90%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           Q+ ++++D +VKDA+G++VDLS YKGKV+LIVNVASKCG+TN++Y EL+Q+Y KYK++G 
Sbjct: 4   QSKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGF 63

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
           EILAFPCNQFG++EPG+N++I DFVCT+FKSEFPIF+KIDVNGE+A+P+Y+ LK+G +GI
Sbjct: 64  EILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYGI 123

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169
            G DIQWNF+KFLVDKNGQ VD YYPTTS L++E DI+KLLGL
Sbjct: 124 LGGDIQWNFSKFLVDKNGQPVDCYYPTTSPLTVERDIQKLLGL 166

May constitute a glutathione peroxidase-like protective system against oxidative stresses.

Helianthus annuus (taxid: 4232)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 9

>sp|Q9FXS3|GPX4_TOBAC Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1

 Score =  251 bits (640), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 115/170 (67%), Positives = 146/170 (85%), Gaps = 1/170 (0%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M SQ    P+SI+D +VKDA+G++VDLS YKGKVL+IVNVAS+CG+TNSNY +++++Y K
Sbjct: 1   MASQ-SSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKK 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFG +EPGS ++I + VCTRFK+E+PIF+K+DVNG++A+PLYK LK
Sbjct: 60  YKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLK 119

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           S K G FGD I+WNF+KFLVDK G VVDRY PTT+  S+E DIKKLLG++
Sbjct: 120 SSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLGVA 169

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O24031|GPX4_SOLLC Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1

 Score =  249 bits (635), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 113/170 (66%), Positives = 144/170 (84%), Gaps = 1/170 (0%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q   NP+S++D +VKDA+G +VDLS YKGKVL+IVNVAS+CG+TNSNY ++++LY K
Sbjct: 1   MATQ-TSNPQSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKK 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFG +EPG+ + I   VCTRFK+E+PIF+K+DVNG++A+PLY+ LK
Sbjct: 60  YKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLK 119

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           S K G FGD I+WNF+KFL+DK G VVDRY PTTS  S+E DIKKLLG++
Sbjct: 120 SSKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSPASMEKDIKKLLGVA 169

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Solanum lycopersicum (taxid: 4081)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O23814|GPX4_SPIOL Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1

 Score =  248 bits (632), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 110/169 (65%), Positives = 143/169 (84%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M S     P+S+ +  V+DARG++VDLS YKGKVLLIVNVAS+CG+TNSNY E+++LY+K
Sbjct: 1   MASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           Y++ GLEILAFPCNQFG +EPGSN+++ +F CTRFK+E+PIF+K+DVNG +A+P+YK LK
Sbjct: 61  YRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169
           S K G+FGD ++WNF KFLVDK+G VVDRY PTTS  S+E D+KKLLG+
Sbjct: 121 SSKGGLFGDGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLLGI 169

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|O49069|GPX4_GOSHI Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1

 Score =  247 bits (631), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 145/171 (84%), Gaps = 2/171 (1%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M SQ    P+SI+D +VKDA+G++VDLS YKGKVL+IVNVAS+CG+TNSNY +L+++Y K
Sbjct: 1   MASQ-SSKPQSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKK 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGS-NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLL 119
           YKDQGLEILAFPCNQFG +EPGS  + I + VCTRFK+E+PIF+K+DVNG++A+PLYK L
Sbjct: 60  YKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFL 119

Query: 120 KSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           KS K G FGD I+WNF+KFLVDK G VVDRY PTT+  S+E DIKKLLG++
Sbjct: 120 KSSKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTPASMEKDIKKLLGVA 170

Protects cells and enzymes from oxidative damage, by catalyzing the reduction of hydrogen peroxide, lipid peroxides and organic hydroperoxide, by glutathione.

Gossypium hirsutum (taxid: 3635)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
440647206	169	glutathione peroxidase [Ziziphus jujuba]	0.994	1.0	0.829	1e-78
224058527	170	glutathione peroxidase [Populus trichoca	1.0	1.0	0.805	3e-77
157835621	170	Chain A, Crystal Structure Of The Poplar	1.0	1.0	0.805	3e-77
225426405	170	PREDICTED: probable glutathione peroxida	1.0	1.0	0.794	8e-77
255537449	169	glutathione peroxidase, putative [Ricinu	0.994	1.0	0.804	8e-77
388521743	171	unknown [Lotus japonicus]	0.952	0.947	0.827	1e-76
356528242	167	PREDICTED: probable glutathione peroxida	0.941	0.958	0.825	1e-75
449452332	170	PREDICTED: probable glutathione peroxida	1.0	1.0	0.758	7e-75
449495817	170	PREDICTED: probable glutathione peroxida	1.0	1.0	0.758	9e-75
18407822	167	glutathione peroxidase [Arabidopsis thal	0.964	0.982	0.786	6e-74

>gi|440647206|dbj|BAM74249.1| glutathione peroxidase [Ziziphus jujuba]

 Score =  297 bits (760), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/170 (82%), Positives = 159/170 (93%), Gaps = 1/170 (0%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           MTSQ  + PE+I+D +VKDA+G ++DLSTYKGKVLLIVNVASKCGMTNSNY EL+QLY+K
Sbjct: 1   MTSQ-PRFPETIYDFTVKDAKGDDIDLSTYKGKVLLIVNVASKCGMTNSNYTELNQLYEK 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKD GLEILAFPCNQFGEEEPGSN+QI +FVCTRFKSEFPIF+KI+VNGE A+P+YK LK
Sbjct: 60  YKDHGLEILAFPCNQFGEEEPGSNEQITEFVCTRFKSEFPIFDKIEVNGESAAPIYKFLK 119

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           SGKWGIFGDDIQWNFAKFLVDK+G+VVDRYYPTTS LSLEHDIKKLLG+S
Sbjct: 120 SGKWGIFGDDIQWNFAKFLVDKDGKVVDRYYPTTSPLSLEHDIKKLLGIS 169

Source: Ziziphus jujuba

Species: Ziziphus jujuba

Genus: Ziziphus

Family: Rhamnaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058527|ref|XP_002299535.1| glutathione peroxidase [Populus trichocarpa] gi|222846793|gb|EEE84340.1| glutathione peroxidase [Populus trichocarpa]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 156/170 (91%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q  +NPES+ D ++KDA+ ++VDLS +KGKVLLIVNVASKCGMTNSNY E++QLY+K
Sbjct: 1   MATQTSKNPESVHDFTIKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFGEEEPG+NDQI DFVCTRFKSEFPIF+KIDVNGE+ASPLYK LK
Sbjct: 61  YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYKFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
            GKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLE DIK+LL +S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157835621|pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form gi|157835622|pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form gi|157835623|pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form gi|157835624|pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form gi|157835625|pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Oxidized Form gi|157835626|pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Oxidized Form gi|125976395|gb|ABN59534.1| glutathione peroxidase 5 [Populus trichocarpa x Populus deltoides]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 156/170 (91%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q  +NPES+ D +VKDA+ ++VDLS +KGKVLLIVNVASKCGMTNSNY E++QLY+K
Sbjct: 1   MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFGEEEPG+NDQI DFVCTRFKSEFPIF+KIDVNGE+ASPLY+ LK
Sbjct: 61  YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
            GKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLE DIK+LL +S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS 170

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426405|ref|XP_002272936.1| PREDICTED: probable glutathione peroxidase 8 [Vitis vinifera] gi|297742529|emb|CBI34678.3| unnamed protein product [Vitis vinifera]

 Score =  291 bits (744), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 135/170 (79%), Positives = 155/170 (91%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M+ Q  Q PESI+D +VKDA G  V+LS YKGKVLLIVNVASKCG+TNSNY EL+QLY+K
Sbjct: 1   MSKQIQQGPESIYDFTVKDAEGKSVNLSIYKGKVLLIVNVASKCGLTNSNYTELNQLYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFGEEEPGSN+QI +FVCTRFKSEFP+F+KIDVNGE+A+PLYK LK
Sbjct: 61  YKDQGLEILAFPCNQFGEEEPGSNEQILEFVCTRFKSEFPVFDKIDVNGENAAPLYKFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           SGKWGIFGDDIQWNF KFLVDKNG++VDRYYPTTS L++E+D+KKLL +S
Sbjct: 121 SGKWGIFGDDIQWNFGKFLVDKNGKIVDRYYPTTSPLTVENDVKKLLEVS 170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537449|ref|XP_002509791.1| glutathione peroxidase, putative [Ricinus communis] gi|223549690|gb|EEF51178.1| glutathione peroxidase, putative [Ricinus communis]

 Score =  291 bits (744), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 136/169 (80%), Positives = 158/169 (93%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M SQF + PES+ D +VKDA+G++V+LS +KGKVLLIVNVASKCGMTNSNY EL+QLYD+
Sbjct: 1   MASQFSKYPESVHDFAVKDAKGNDVNLSIFKGKVLLIVNVASKCGMTNSNYTELNQLYDE 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKD+GLEILAFPCNQFG+EEPGSND+I +FVC+RFKSEFPIF+KI+VNGE++S LYK LK
Sbjct: 61  YKDKGLEILAFPCNQFGDEEPGSNDEITEFVCSRFKSEFPIFDKIEVNGENSSSLYKFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169
           SGKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLEHDIKKLLG+
Sbjct: 121 SGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLEHDIKKLLGV 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521743|gb|AFK48933.1| unknown [Lotus japonicus]

 Score =  290 bits (742), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 134/162 (82%), Positives = 156/162 (96%)

Query: 8   NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE 67
           +P+S++D SVKDA+G +VDLSTYKGKVLLIVNVASKCGM+NSNY+EL+QL++KYKD+GLE
Sbjct: 9   HPKSLYDFSVKDAKGSDVDLSTYKGKVLLIVNVASKCGMSNSNYVELNQLHEKYKDKGLE 68

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           ILAFPCNQFGEEEPGSNDQI++FVCTRFKSEFPIF+KI+VNGE+++PLYK LK GKWGIF
Sbjct: 69  ILAFPCNQFGEEEPGSNDQISEFVCTRFKSEFPIFDKIEVNGENSAPLYKFLKLGKWGIF 128

Query: 128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169
           GDDIQWNFAKFLVDK+GQVVDRYYPTTS LSLE DI+KLLG+
Sbjct: 129 GDDIQWNFAKFLVDKDGQVVDRYYPTTSPLSLERDIRKLLGI 170

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528242|ref|XP_003532714.1| PREDICTED: probable glutathione peroxidase 8-like [Glycine max]

 Score =  286 bits (733), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/160 (82%), Positives = 152/160 (95%)

Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
           +S+FD +VKDA+G +VDL+TYKGKVLLIVNVASKCGMTNSNY+EL+QL++KYKD+GLEIL
Sbjct: 7   KSVFDFTVKDAKGDDVDLATYKGKVLLIVNVASKCGMTNSNYVELNQLFEKYKDKGLEIL 66

Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
           AFPCNQFGEEEPGSNDQI +FVCTRFKSEFPIF+KI+VNG+ A PLYK LKSGKWGIFGD
Sbjct: 67  AFPCNQFGEEEPGSNDQIQEFVCTRFKSEFPIFDKIEVNGDSACPLYKFLKSGKWGIFGD 126

Query: 130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169
           DIQWNFAKFL+DK+GQVVDRYYPTTS LSLE DI+KL+G+
Sbjct: 127 DIQWNFAKFLIDKDGQVVDRYYPTTSPLSLERDIRKLIGI 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452332|ref|XP_004143913.1| PREDICTED: probable glutathione peroxidase 8-like [Cucumis sativus]

 Score =  284 bits (727), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 155/170 (91%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q   +PESI+D +VKDA G++++LS +KGKVLLIVNVAS+CGMTNSNY+EL+QLY+K
Sbjct: 1   MATQASNHPESIYDFTVKDAMGNDINLSIFKGKVLLIVNVASRCGMTNSNYVELNQLYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YK+ GLE+LAFPCNQFG+EEPGSND+I DFVC+RFKSEFPIF+KI+VNG +++PLYK LK
Sbjct: 61  YKEHGLEVLAFPCNQFGDEEPGSNDEIKDFVCSRFKSEFPIFDKIEVNGNNSAPLYKFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
            GKWGIFGDDIQWNFAKFL+DKNG VVDRYYPTT  LS+EHDIKKLLG+S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLIDKNGNVVDRYYPTTPPLSIEHDIKKLLGIS 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495817|ref|XP_004159953.1| PREDICTED: probable glutathione peroxidase 8-like [Cucumis sativus]

 Score =  284 bits (726), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 129/170 (75%), Positives = 154/170 (90%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q   +PESI+D +VKDA G+++ LS +KGKVLLIVNVAS+CGMTNSNY+EL+QLY+K
Sbjct: 1   MATQASNHPESIYDFTVKDAMGNDISLSIFKGKVLLIVNVASRCGMTNSNYVELNQLYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YK+ GLE+LAFPCNQFG+EEPGSND+I DFVC+RFKSEFPIF+KI+VNG +++PLYK LK
Sbjct: 61  YKEHGLEVLAFPCNQFGDEEPGSNDEIKDFVCSRFKSEFPIFDKIEVNGNNSAPLYKFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
            GKWGIFGDDIQWNFAKFL+DKNG VVDRYYPTT  LS+EHDIKKLLG+S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLIDKNGNVVDRYYPTTPPLSIEHDIKKLLGIS 170

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18407822|ref|NP_564813.1| glutathione peroxidase [Arabidopsis thaliana] gi|75155056|sp|Q8LBU2.1|GPX8_ARATH RecName: Full=Probable glutathione peroxidase 8 gi|21592603|gb|AAM64552.1| unknown [Arabidopsis thaliana] gi|27765006|gb|AAO23624.1| At1g63460 [Arabidopsis thaliana] gi|110743432|dbj|BAE99602.1| glutathione peroxidase like protein [Arabidopsis thaliana] gi|332195981|gb|AEE34102.1| glutathione peroxidase [Arabidopsis thaliana]

 Score =  281 bits (719), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 129/164 (78%), Positives = 149/164 (90%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           + PES+++LS++DA+G+ + LS YK KVLLIVNVASKCGMTNSNY EL++LY++YKD+GL
Sbjct: 4   KEPESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGL 63

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
           EILAFPCNQFG+EEPG+NDQI DFVCTRFKSEFPIF KI+VNGE+ASPLYK LK GKWGI
Sbjct: 64  EILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGI 123

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           FGDDIQWNFAKFLVDKNGQ V RYYPTTS L+LEHDIK LL +S
Sbjct: 124 FGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLLNIS 167

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2031331	167	GPX8 "AT1G63460" [Arabidopsis	0.964	0.982	0.786	1.6e-70
TAIR|locus:2139712	232	GPX6 "glutathione peroxidase 6	0.952	0.698	0.697	8.8e-63
TAIR|locus:2116782	233	GPX7 "glutathione peroxidase 7	0.929	0.678	0.651	3.4e-54
TAIR|locus:2058233	206	GPX3 "glutathione peroxidase 3	0.947	0.781	0.645	6.3e-53
TAIR|locus:2040179	236	GPX1 "glutathione peroxidase 1	0.929	0.669	0.620	7.2e-52
TAIR|locus:2065928	169	GPX2 "glutathione peroxidase 2	0.952	0.958	0.604	1.2e-51
TAIR|locus:2099252	173	GPX5 "glutathione peroxidase 5	0.929	0.913	0.594	1.2e-49
TAIR|locus:2039346	170	GPX4 "glutathione peroxidase 4	0.935	0.935	0.556	3.8e-46
WB|WBGene00009165	163	gpx-1 [Caenorhabditis elegans	0.929	0.969	0.544	1.3e-43
WB|WBGene00011045	163	gpx-2 [Caenorhabditis elegans	0.923	0.963	0.528	1.1e-41

TAIR|locus:2031331 GPX8 "AT1G63460" [Arabidopsis thaliana (taxid:3702)]

 Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
 Identities = 129/164 (78%), Positives = 149/164 (90%)

Query:     7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
             + PES+++LS++DA+G+ + LS YK KVLLIVNVASKCGMTNSNY EL++LY++YKD+GL
Sbjct:     4 KEPESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGL 63

Query:    67 EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
             EILAFPCNQFG+EEPG+NDQI DFVCTRFKSEFPIF KI+VNGE+ASPLYK LK GKWGI
Sbjct:    64 EILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGI 123

Query:   127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
             FGDDIQWNFAKFLVDKNGQ V RYYPTTS L+LEHDIK LL +S
Sbjct:   124 FGDDIQWNFAKFLVDKNGQAVQRYYPTTSPLTLEHDIKNLLNIS 167

GO:0004602 "glutathione peroxidase activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0004601 "peroxidase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2139712 GPX6 "glutathione peroxidase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 113/162 (69%), Positives = 143/162 (88%)

Query:     9 PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI 68
             P+S++D +VKDA+G++VDLS YKGKVLLIVNVAS+CG+TNSNY EL+QLY+KYK  G EI
Sbjct:    70 PKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEI 129

Query:    69 LAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG 128
             LAFPCNQFG +EPG+N++I  F CTRFK+E+PIF+K+DVNG+ A+P+YK LKS K G+FG
Sbjct:   130 LAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLFG 189

Query:   129 DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
             D I+WNFAKFLVDK+G VVDR+ PTTS LS+E D+KKLLG++
Sbjct:   190 DGIKWNFAKFLVDKDGNVVDRFAPTTSPLSIEKDVKKLLGVT 231

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA;TAS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009507 "chloroplast" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0006333 "chromatin assembly or disassembly" evidence=RCA

GO:0007623 "circadian rhythm" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2116782 GPX7 "glutathione peroxidase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
 Identities = 103/158 (65%), Positives = 126/158 (79%)

Query:    10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
             +S+ D +VKD  G++V L  +KGK LLIVNVAS+CG+T+SNY ELSQLY+KYK+QG EIL
Sbjct:    74 KSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQGFEIL 133

Query:    70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
             AFPCNQFG +EPGSN +I  F CTRFK+EFPIF+K+DVNG   +P+YK LKS   G  GD
Sbjct:   134 AFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGGFLGD 193

Query:   130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              I+WNF KFLVDK G+VV+RY PTTS   +E DI+KLL
Sbjct:   194 IIKWNFEKFLVDKKGKVVERYPPTTSPFQIEKDIQKLL 231

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2058233 GPX3 "glutathione peroxidase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 104/161 (64%), Positives = 126/161 (78%)

Query:     7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
             Q+  SI+++SVKD  G +V LS + GKVLLIVNVASKCG+T+ NY E++ LY KYK QG 
Sbjct:    43 QSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGF 102

Query:    67 EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
             EILAFPCNQFG +EPGSN +I + VC  FK+EFPIF+KI+VNG++  PLY  LK  K G+
Sbjct:   103 EILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGL 162

Query:   127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
             FGD I+WNFAKFLVD+ G VVDRY PTTS L +E DI KLL
Sbjct:   163 FGDAIKWNFAKFLVDRQGNVVDRYAPTTSPLEIEKDIVKLL 203

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0042631 "cellular response to water deprivation" evidence=IMP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2040179 GPX1 "glutathione peroxidase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 98/158 (62%), Positives = 124/158 (78%)

Query:    10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
             +++ D +VKD  G +V L+ +KGKV+LIVNVAS+CG+T+SNY ELS LY+KYK QG EIL
Sbjct:    77 KTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEIL 136

Query:    70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
             AFPCNQFG +EPGSN +I  F CTRFK+EFPIF+K+DVNG   +P+Y+ LKS   G  G 
Sbjct:   137 AFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGGFLGG 196

Query:   130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              I+WNF KFL+DK G+VV+RY PTTS   +E DI+KLL
Sbjct:   197 LIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKLL 234

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2065928 GPX2 "glutathione peroxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 98/162 (60%), Positives = 129/162 (79%)

Query:     7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
             ++P+SI+D +VKD  G++V L  YKGK LL+VNVASKCG+T++NY EL+ LY+KYK+QGL
Sbjct:     4 ESPKSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGL 63

Query:    67 EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
             EILAFPCNQF  +EPG+N++I   VCTRFK+EFPIF+K+DVNG++ +PLYK LK+ K G+
Sbjct:    64 EILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGL 123

Query:   127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
               D I+WNF KFLV  +G+V+ RY P TS L  E DI+  LG
Sbjct:   124 LIDAIKWNFTKFLVSPDGKVLQRYSPRTSPLQFEKDIQTALG 165

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2099252 GPX5 "glutathione peroxidase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 94/158 (59%), Positives = 123/158 (77%)

Query:    10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
             +SI   +VKD+ G EVDLS Y+GKVLL+VNVASKCG T SNY +L++LY KYKDQG  +L
Sbjct:    12 KSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVL 71

Query:    70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
             AFPCNQF  +EPG++++   F CTRFK+E+P+F+K+ VNG++A+P+YK LKS K    G 
Sbjct:    72 AFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSKKPSFLGS 131

Query:   130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              I+WNF KFLV K+GQV+DRY  T S LS++ DI+K L
Sbjct:   132 RIKWNFTKFLVGKDGQVIDRYGTTVSPLSIQKDIEKAL 169

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2039346 GPX4 "glutathione peroxidase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 89/160 (55%), Positives = 121/160 (75%)

Query:     9 PE-SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE 67
             PE S+   +VKD+ G ++++S Y+GKVLLIVNVASKCG T +NY +L++LY KYKDQ  E
Sbjct:     8 PERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFE 67

Query:    68 ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
             ILAFPCNQF  +EPG++ +  +F C RFK+E+P+F+K+ VNG++A+P+YK LK+ K    
Sbjct:    68 ILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKASKPTFL 127

Query:   128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
             G  I+WNF KFLV K+G V+DRY    + LS+E DIKK L
Sbjct:   128 GSRIKWNFTKFLVGKDGLVIDRYGTMVTPLSIEKDIKKAL 167

GO:0004602 "glutathione peroxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=NAS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

WB|WBGene00009165 gpx-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
 Identities = 86/158 (54%), Positives = 113/158 (71%)

Query:    11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
             S++D +VK+A G +V LS YKGKVL+IVNVAS+CG+TN NY +L +L D YK  GLE+LA
Sbjct:     3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLA 62

Query:    71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
             FPCNQF  +EP     I  FV  +FK E  +F+KIDVNG+  SPL+K LK+ K G   D 
Sbjct:    63 FPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGGFMFDA 122

Query:   131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
             I+WNF KFLV ++G+++ R+ PTT    +E DIK+ LG
Sbjct:   123 IKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKEALG 160

GO:0055114 "oxidation-reduction process" evidence=IEA;IMP

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

GO:0006629 "lipid metabolic process" evidence=IMP

GO:0090087 "regulation of peptide transport" evidence=IMP

GO:0047066 "phospholipid-hydroperoxide glutathione peroxidase activity" evidence=IMP

WB|WBGene00011045 gpx-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 83/157 (52%), Positives = 111/157 (70%)

Query:    11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
             S+  ++VK+A+G +  LS Y+GKVL+IVNVAS+CG+TNSNY +  +L D YK  GLE+LA
Sbjct:     3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLA 62

Query:    71 FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
             FPCNQFG +EP     IA FV  +FK E  +F+KIDVNG++ +PLYK LK  K G   D 
Sbjct:    63 FPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGGFLVDA 122

Query:   131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
             I+WNF KFLV ++G V+ R+ PTT    ++ DI+  L
Sbjct:   123 IKWNFTKFLVGRDGHVIKRFSPTTEPKDMKKDIEAAL 159

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004602 "glutathione peroxidase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z9N7	BSAA_BACHD	1, ., -, ., -, ., -	0.5031	0.9176	0.9936	yes	no
P38143	GPX2_YEAST	1, ., 1, 1, ., 1, ., 9	0.5253	0.9176	0.9629	yes	no
O23814	GPX4_SPIOL	1, ., 1, 1, ., 1, ., 1, 2	0.6508	0.9941	0.9883	N/A	no
Q5HKZ3	BSAA_STAEQ	1, ., -, ., -, ., -	0.4649	0.9176	0.9873	yes	no
A1KV41	GPXA_NEIMF	No assigned EC number	0.4602	0.9117	0.8757	yes	no
P0A0T5	GPXA_NEIMB	No assigned EC number	0.4602	0.9117	0.8757	yes	no
P0A0T4	GPXA_NEIMA	No assigned EC number	0.4602	0.9117	0.8757	yes	no
Q9CFV1	GPO_LACLA	1, ., 1, 1, ., 1, ., 9	0.4585	0.9176	0.9936	yes	no
Q9FXS3	GPX4_TOBAC	1, ., 1, 1, ., 1, ., 1, 2	0.6764	0.9941	1.0	N/A	no
P64291	BSAA_STAAW	No assigned EC number	0.4810	0.9235	0.9936	yes	no
Q6GHD0	BSAA_STAAR	No assigned EC number	0.4810	0.9235	0.9936	yes	no
Q9LEF0	GPX4_MESCR	1, ., 1, 1, ., 1, ., 1, 2	0.7	1.0	1.0	N/A	no
O23968	GPX4_HELAN	1, ., 1, 1, ., 1, ., 1, 2	0.6586	0.9705	0.9166	N/A	no
O32770	GPO_LACLM	1, ., 1, 1, ., 1, ., 9	0.4713	0.9176	0.9936	yes	no
Q5HGC7	BSAA_STAAC	No assigned EC number	0.4810	0.9235	0.9936	yes	no
P99097	BSAA_STAAN	No assigned EC number	0.4810	0.9235	0.9936	yes	no
O24031	GPX4_SOLLC	1, ., 1, 1, ., 1, ., 1, 2	0.6647	0.9941	1.0	N/A	no
Q06652	GPX4_CITSI	1, ., 1, 1, ., 1, ., 1, 2	0.7329	0.9470	0.9640	no	no
P52035	BSAA_BACSU	1, ., -, ., -, ., -	0.4873	0.9176	0.975	yes	no
P30708	GPX4_NICSY	1, ., 1, 1, ., 1, ., 1, 2	0.6823	0.9941	1.0	N/A	no
O02621	GPX1_CAEEL	1, ., 1, 1, ., 1, ., 9	0.5443	0.9294	0.9693	yes	no
P64290	BSAA_STAAM	No assigned EC number	0.4810	0.9235	0.9936	yes	no
O59858	GPX1_SCHPO	1, ., 1, 1, ., 1, ., 9	0.4838	0.9058	0.9746	yes	no
Q6G9Q8	BSAA_STAAS	No assigned EC number	0.4810	0.9235	0.9936	yes	no
O49069	GPX4_GOSHI	1, ., 1, 1, ., 1, ., 1, 2	0.6783	0.9941	0.9941	N/A	no
Q8LBU2	GPX8_ARATH	1, ., 1, 1, ., 1, ., 9	0.7865	0.9647	0.9820	yes	no
O23970	GPX1_HELAN	1, ., 1, 1, ., 1, ., 9	0.6993	0.9588	0.9760	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.11.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	PtrcGpx5	glutathione peroxidase (170 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pg.C_LG_V000227	hypothetical protein (624 aa)						•	•		0.901
	gw1.145.154.1	hypothetical protein (564 aa)						•	•		0.901
	gw1.I.2970.1	hypothetical protein (547 aa)						•	•		0.901
	gw1.XI.3695.1	hypothetical protein (213 aa)						•			0.899
	gw1.X.4735.1	hypothetical protein (207 aa)						•			0.899
	gw1.VIII.2694.1	hypothetical protein (225 aa)						•			0.899
	gw1.28.365.1	hypothetical protein (220 aa)						•			0.899
	gw1.13302.2.1	annotation not avaliable (135 aa)						•			0.899
	grail3.0104000601	SubName- Full=Putative uncharacterized protein; (213 aa)						•			0.899
	grail3.0044011201	hypothetical protein (214 aa)						•			0.899

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
cd00340	152	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxid	8e-83
PLN02412	167	PLN02412, PLN02412, probable glutathione peroxidas	3e-82
PLN02399	236	PLN02399, PLN02399, phospholipid hydroperoxide glu	1e-81
COG0386	162	COG0386, BtuE, Glutathione peroxidase [Posttransla	1e-76
PTZ00256	183	PTZ00256, PTZ00256, glutathione peroxidase; Provis	7e-56
pfam00255	108	pfam00255, GSHPx, Glutathione peroxidase	5e-53
PRK10606	183	PRK10606, btuE, putative glutathione peroxidase; P	9e-51
TIGR02540	153	TIGR02540, gpx7, putative glutathione peroxidase G	7e-44
PTZ00056	199	PTZ00056, PTZ00056, glutathione peroxidase; Provis	2e-42
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	1e-08
pfam08534	142	pfam08534, Redoxin, Redoxin	1e-07
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	2e-05
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	3e-04

>gnl|CDD|238207 cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

 Score =  240 bits (615), Expect = 8e-83
 Identities = 93/153 (60%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SI+D SVKD  G  V LS YKGKVLLIVNVASKCG     Y  L  LY+KYKD+GL +L 
Sbjct: 1   SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLG 59

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FPCNQFG +EPGSN++I +F  T +   FP+F KIDVNGE+A PLYK LK    G+ G D
Sbjct: 60  FPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKD 119

Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163
           I+WNF KFLVD++G+VV R+ PTT    LE DI
Sbjct: 120 IKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes. Length = 152

>gnl|CDD|166053 PLN02412, PLN02412, probable glutathione peroxidase

 Score =  239 bits (612), Expect = 3e-82
 Identities = 107/164 (65%), Positives = 136/164 (82%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           ++P+SI+D +VKD  G++V L+ YKGKVLLIVNVASKCG+T+SNY EL+ LY+KYK+QG 
Sbjct: 4   ESPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGF 63

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
           EILAFPCNQF  +EPGSN++I   VCTRFK+EFPIF+K+DVNG++ +PLYK LK+ K G+
Sbjct: 64  EILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGL 123

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
           FGD I+WNF KFLV K G+VV RY PTTS L +E DI+ LLG +
Sbjct: 124 FGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLGQA 167

Length = 167

>gnl|CDD|178021 PLN02399, PLN02399, phospholipid hydroperoxide glutathione peroxidase

 Score =  240 bits (615), Expect = 1e-81
 Identities = 105/158 (66%), Positives = 126/158 (79%)

Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
           +S+ D +VKD  G +V LS +KGKVLLIVNVASKCG+T+SNY ELS LY+KYK QG EIL
Sbjct: 77  KSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEIL 136

Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
           AFPCNQFG +EPGSN +I  F CTRFK+EFPIF+K+DVNG   +P+Y+ LKS   G  GD
Sbjct: 137 AFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGD 196

Query: 130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            I+WNF KFLVDKNG+VV+RY PTTS   +E DI+KLL
Sbjct: 197 LIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234

Length = 236

>gnl|CDD|223463 COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

 Score =  225 bits (576), Expect = 1e-76
 Identities = 90/160 (56%), Positives = 108/160 (67%), Gaps = 2/160 (1%)

Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
            SI+D SVKD  G  V LS YKGKVLLIVN ASKCG T   Y  L  LY KYKD+G E+L
Sbjct: 3   MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFT-PQYEGLEALYKKYKDKGFEVL 61

Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKS-GKWGIFG 128
            FPCNQFG +EPGS+++IA F    +   FP+F KIDVNG++A PLYK LK      + G
Sbjct: 62  GFPCNQFGGQEPGSDEEIAKFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGG 121

Query: 129 DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
            DI+WNF KFLVD++G VV R+ P T    +E  I+KLL 
Sbjct: 122 KDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLA 161

Length = 162

>gnl|CDD|173495 PTZ00256, PTZ00256, glutathione peroxidase; Provisional

 Score =  173 bits (441), Expect = 7e-56
 Identities = 76/169 (44%), Positives = 107/169 (63%), Gaps = 7/169 (4%)

Query: 6   IQNP-ESIFDLSVKDARGHEVDLSTYKG-KVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
           IQ P +S F+    D  G  V LS +KG K +++VNVA KCG+T+ +Y +L +LY +YK 
Sbjct: 13  IQPPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS 72

Query: 64  QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK 123
           QGLEILAFPCNQF E+EP    +I ++V  +F  +FP+F+KI+VNGE+   +YK L+   
Sbjct: 73  QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNS 132

Query: 124 WGIFGDD-----IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                +      I WNFAKFL+D  G+VV  + P  +   +  DI+KLL
Sbjct: 133 ELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181

Length = 183

>gnl|CDD|201117 pfam00255, GSHPx, Glutathione peroxidase

 Score =  163 bits (415), Expect = 5e-53
 Identities = 67/109 (61%), Positives = 81/109 (74%), Gaps = 1/109 (0%)

Query: 12  IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF 71
           I+D S KD  G  V L  Y+GKVLLIVNVASKCG+T   Y EL++L ++YKD+GL IL F
Sbjct: 1   IYDFSAKDINGEPVPLDQYRGKVLLIVNVASKCGLTP-QYTELNELQERYKDRGLVILGF 59

Query: 72  PCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           PCNQFG++EPGSN++I  F    +   FPIF KIDVNGE+A PLYK LK
Sbjct: 60  PCNQFGKQEPGSNEEIKYFRPGGYGVTFPIFSKIDVNGENAHPLYKFLK 108

Length = 108

>gnl|CDD|182585 PRK10606, btuE, putative glutathione peroxidase; Provisional

 Score =  160 bits (407), Expect = 9e-51
 Identities = 67/162 (41%), Positives = 88/162 (54%), Gaps = 21/162 (12%)

Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SI    V    G    L  Y G VLLIVNVASKCG+T   Y +L  +   + DQG  +L 
Sbjct: 4   SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLT-PQYEQLENIQKAWADQGFVVLG 62

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLL----------- 119
           FPCNQF  +EPGS+++I  +  T +   FP+F KI+VNGE   PLY+ L           
Sbjct: 63  FPCNQFLGQEPGSDEEIKTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPE 122

Query: 120 ---------KSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP 152
                      G+  ++ DDI WNF KFLV ++GQV+ R+ P
Sbjct: 123 ESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSP 164

Length = 183

>gnl|CDD|131592 TIGR02540, gpx7, putative glutathione peroxidase Gpx7

 Score =  141 bits (358), Expect = 7e-44
 Identities = 64/159 (40%), Positives = 89/159 (55%), Gaps = 8/159 (5%)

Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
             +   VKDARG  V L  Y+GKV L+VNVAS+CG T+ NY  L +L+ +       +LA
Sbjct: 1   DFYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLA 60

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLL--KSGKWGIFG 128
           FPCNQFGE EP S+ +I  F    +   FP+F KI + G  A P ++ L   S K     
Sbjct: 61  FPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKK----- 115

Query: 129 DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            + +WNF K+LV+  GQVV  + P   +  +  +I  L+
Sbjct: 116 -EPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7. Length = 153

>gnl|CDD|240248 PTZ00056, PTZ00056, glutathione peroxidase; Provisional

 Score =  139 bits (353), Expect = 2e-42
 Identities = 67/165 (40%), Positives = 98/165 (59%), Gaps = 6/165 (3%)

Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SI+D +VK   G  V +S+ K KVL+I N ASKCG+T  +  ++++L+  +   GLEILA
Sbjct: 18  SIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILA 77

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FP +QF  +E  +   I  F   + K ++  FE I+VNGE+   L+K LK+    +  ++
Sbjct: 78  FPTSQFLNQEFPNTKDIRKFN-DKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDEN 136

Query: 131 -----IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
                I WNF KFLV+K+G VV  + P T  L LE  I +LLG+ 
Sbjct: 137 GTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGVK 181

Length = 199

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 35/143 (24%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           D S+ D  G  V LS  KGKV+L VN  AS C      M      EL  L  +YKD G+E
Sbjct: 1   DFSLPDLDGKPVSLSDLKGKVVL-VNFWASWCPPCRAEMP-----ELEALAKEYKDDGVE 54

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           ++    N     +      +  F+  ++   FP+   +D +GE A           +G+ 
Sbjct: 55  VVGV--NV----DDDDPAAVKAFL-KKYGITFPVL--LDPDGELAK---------AYGVR 96

Query: 128 GDDIQWNFAKFLVDKNGQVVDRY 150
           G         FL+D++G++  R+
Sbjct: 97  G----L-PTTFLIDRDGRIRARH 114

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 32/142 (22%), Positives = 58/142 (40%), Gaps = 24/142 (16%)

Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAF 71
           F L      G  V LS +KGK +++       C   ++ +  L +L   YK +G++++A 
Sbjct: 8   FTLPDVALDGKTVSLSDFKGKKVVLNFWPGAFCPTCSAEHPYLEKLSKLYKAKGVDVVA- 66

Query: 72  PCNQFGEEEPGSNDQ--IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
             N        SND   + +F   +   ++P+          A       K+  +G+  D
Sbjct: 67  -VNA-------SNDPFFVMNF-WAKEGLKYPVL---------ADRDGAFTKA--YGLTED 106

Query: 130 DIQWNFAKFLVDKNGQVVDRYY 151
                   FL+D++G+VV    
Sbjct: 107 AGLRTPRYFLIDEDGKVVYLEV 128

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 41.8 bits (99), Expect = 2e-05
 Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 20/137 (14%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFP 72
           D  + D  G EV LS YKGK +++         +  +    L+ LY+++K  G+E+L   
Sbjct: 7   DFELPDLDGKEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGVEVLGVS 66

Query: 73  CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ 132
            +        S +    F   +    FP+    D +GE A   Y +L   +         
Sbjct: 67  VD--------SPESHKKF-AEKLGLPFPLL--SDPDGEVAK-AYGVLNEEEGLALR---- 110

Query: 133 WNFAKFLVDKNGQVVDR 149
                F++D +G++   
Sbjct: 111 ---TTFVIDPDGKIRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 34/140 (24%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
           +  + D  G +++L   KGK + +    + C         +++LY KYK++G+EI+A   
Sbjct: 43  NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV 102

Query: 74  NQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE-----HASPLYKLLKSGKWGIFG 128
           +    E   +     +    R+   FP+   ID   +        PL             
Sbjct: 103 D----ETELAVKNFVN----RYGLTFPV--AIDKGRQVIDAYGVGPLP------------ 140

Query: 129 DDIQWNFAKFLVDKNGQVVD 148
                    FL+DK+G+VV 
Sbjct: 141 -------TTFLIDKDGKVVK 153

Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	100.0
PTZ00056	199	glutathione peroxidase; Provisional	100.0
PLN02412	167	probable glutathione peroxidase	100.0
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	100.0
PRK10606	183	btuE putative glutathione peroxidase; Provisional	100.0
PTZ00256	183	glutathione peroxidase; Provisional	100.0
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.98
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	99.97
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	99.95
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.95
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.95
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.95
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.95
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.94
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.94
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.94
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.94
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.94
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.94
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.93
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.93
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.93
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.92
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.92
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.92
PRK13190	202	putative peroxiredoxin; Provisional	99.92
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.92
PRK13599	215	putative peroxiredoxin; Provisional	99.91
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.91
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.91
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.91
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.91
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.91
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.9
PRK13191	215	putative peroxiredoxin; Provisional	99.9
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.9
PRK15000	200	peroxidase; Provisional	99.9
PRK13189	222	peroxiredoxin; Provisional	99.9
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.9
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.89
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.89
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.89
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.89
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.88
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.87
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.86
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.86
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.85
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.82
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.82
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.82
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.81
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.8
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.77
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.76
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	99.75
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	99.73
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.68
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	99.64
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.59
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.58
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	99.57
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.56
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.55
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.55
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.55
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.54
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.54
PRK09381	109	trxA thioredoxin; Provisional	99.53
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.53
PRK10996	139	thioredoxin 2; Provisional	99.47
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.46
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.46
PHA02278	103	thioredoxin-like protein	99.45
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.45
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	99.44
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.44
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.42
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.42
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.41
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	99.41
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.39
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.39
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.38
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.37
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.37
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.37
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.36
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.35
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.33
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.33
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.31
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.3
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.29
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.29
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.29
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.26
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	99.25
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.23
PTZ00051	98	thioredoxin; Provisional	99.23
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.22
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.2
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.2
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.2
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.2
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.18
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	99.17
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.16
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.12
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.12
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	99.11
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.1
PTZ00102	477	disulphide isomerase; Provisional	99.09
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.07
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.06
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.06
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	99.05
cd02947	93	TRX_family TRX family; composed of two groups: Gro	99.05
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.05
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.03
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.02
PLN02309	457	5'-adenylylsulfate reductase	99.02
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.99
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.97
PTZ00102	477	disulphide isomerase; Provisional	98.93
PTZ00062	204	glutaredoxin; Provisional	98.84
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.78
PF13728	215	TraF: F plasmid transfer operon protein	98.77
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.77
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.76
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.73
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.73
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.7
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	98.64
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.64
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.58
smart00594	122	UAS UAS domain.	98.49
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.47
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.46
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.38
PHA02125	75	thioredoxin-like protein	98.38
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	98.34
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.34
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	98.33
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.11
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.11
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	98.11
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.09
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	98.0
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.99
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	97.93
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	97.9
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.85
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.85
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	97.85
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	97.83
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.73
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	97.61
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.6
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.55
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	97.5
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.23
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	97.22
KOG4277	468	consensus Uncharacterized conserved protein, conta	97.16
KOG0541	171	consensus Alkyl hydroperoxide reductase/peroxiredo	97.16
PRK11200	85	grxA glutaredoxin 1; Provisional	97.06
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	97.06
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.04
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.03
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	97.02
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.02
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.97
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	96.89
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.7
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.67
KOG3425	128	consensus Uncharacterized conserved protein [Funct	96.52
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	96.38
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	96.37
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.36
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.3
COG1331	667	Highly conserved protein containing a thioredoxin	96.3
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	96.15
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.14
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	96.08
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	96.03
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	95.93
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	95.87
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.69
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	95.55
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	95.33
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	95.32
PHA03050	108	glutaredoxin; Provisional	95.2
PRK10329	81	glutaredoxin-like protein; Provisional	95.17
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	95.13
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	94.88
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.65
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	94.63
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	94.6
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	94.4
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	94.3
PRK10638	83	glutaredoxin 3; Provisional	94.27
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.22
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	94.11
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	93.94
KOG4498	197	consensus Uncharacterized conserved protein [Funct	93.63
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	93.37
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	93.36
PRK10824	115	glutaredoxin-4; Provisional	92.95
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	92.87
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	92.06
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	91.6
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	91.21
KOG2507	506	consensus Ubiquitin regulatory protein UBXD2, cont	90.98
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	90.81
COG3054	184	Predicted transcriptional regulator [General funct	90.64
COG1651	244	DsbG Protein-disulfide isomerase [Posttranslationa	90.53
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	89.65
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	89.48
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	89.2
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	89.1
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	88.94
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	88.69
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	88.41
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	88.36
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	87.8
PF06053	249	DUF929: Domain of unknown function (DUF929); Inter	87.68
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	87.38
PTZ00062	204	glutaredoxin; Provisional	87.2
cd03072	111	PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second	86.01
KOG4614	287	consensus Inner membrane protein required for asse	84.87
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	84.21
PRK12559	131	transcriptional regulator Spx; Provisional	83.61
PHA03075	123	glutaredoxin-like protein; Provisional	83.23
PF07976	169	Phe_hydrox_dim: Phenol hydroxylase, C-terminal dim	81.83
PF04278	274	Tic22: Tic22-like family; InterPro: IPR007378 Chlo	81.05
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	80.26

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=100.00  E-value=4.7e-35  Score=212.11  Aligned_cols=164  Identities=64%  Similarity=1.096  Sum_probs=143.0

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ...|..+|+|++.|.+|+.+++++++||++||+||++||++|..++|.|++++++++++|+++|+|++|++...++++.+
T Consensus        73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~  152 (236)
T PLN02399         73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNP  152 (236)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999987767777889


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                      ++++|+.++++++||++.+.|.++......|.+.....++..|..++|+|++||||++|+|++++.|..+++++++.|++
T Consensus       153 ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~  232 (236)
T PLN02399        153 EIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQK  232 (236)
T ss_pred             HHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence            99999855889999998655666655566677665555544445678889999999999999999999999999999999


Q ss_pred             HhcC
Q 030881          166 LLGL  169 (170)
Q Consensus       166 ~l~~  169 (170)
                      +|+.
T Consensus       233 lL~~  236 (236)
T PLN02399        233 LLAA  236 (236)
T ss_pred             HhcC
Confidence            9863

>PTZ00056 glutathione peroxidase; Provisional

Probab=100.00  E-value=8.1e-35  Score=207.56  Aligned_cols=164  Identities=41%  Similarity=0.647  Sum_probs=142.8

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ....+..+|+|++.|.+|+.+++++++||++||+||++||++|+.++|.|++++++++++|++||+|+++++.+.+.++.
T Consensus        12 ~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~   91 (199)
T PTZ00056         12 KDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT   91 (199)
T ss_pred             chhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999988777777889


Q ss_pred             HHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccC-----CccccCceeEEECCCCcEEEEeCCCCCchHH
Q 030881           85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-----DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL  159 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l  159 (170)
                      +++++|++ +++++||++.+.+.++.....++.+.....+..++     ..++++|++||||++|+|++++.|..+++++
T Consensus        92 e~~~~f~~-~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l  170 (199)
T PTZ00056         92 KDIRKFND-KNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLEL  170 (199)
T ss_pred             HHHHHHHH-HcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHH
Confidence            99999997 88999999977667777666667666544443221     4578888999999999999999998888899


Q ss_pred             HHHHHHHhcC
Q 030881          160 EHDIKKLLGL  169 (170)
Q Consensus       160 ~~~l~~~l~~  169 (170)
                      ++.|+++|++
T Consensus       171 ~~~I~~ll~~  180 (199)
T PTZ00056        171 EKKIAELLGV  180 (199)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PLN02412 probable glutathione peroxidase

Probab=100.00  E-value=2.9e-34  Score=199.85  Aligned_cols=163  Identities=66%  Similarity=1.143  Sum_probs=140.7

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      .+..+|+|++.+.+|+.+++++++||++||+||++||++|..++|.|++++++|+++|+.+++|++|++...++++.+++
T Consensus         5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~   84 (167)
T PLN02412          5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI   84 (167)
T ss_pred             cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999987766666777888


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      .++..++++++||++.+.|..+......|.+......+..+..++++|++||||++|+|++++.|..+.+++++.|+++|
T Consensus        85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l  164 (167)
T PLN02412         85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL  164 (167)
T ss_pred             HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence            77765588999999966677765666667766554444444567888899999999999999999999999999999998


Q ss_pred             cCC
Q 030881          168 GLS  170 (170)
Q Consensus       168 ~~~  170 (170)
                      +++
T Consensus       165 ~~~  167 (167)
T PLN02412        165 GQA  167 (167)
T ss_pred             hhC
Confidence            763

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=100.00  E-value=5.1e-33  Score=191.08  Aligned_cols=150  Identities=61%  Similarity=1.053  Sum_probs=126.1

Q ss_pred             cccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        12 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      +|+|++.|.+|+.+++++++||++||+||++||+ |..++|.|++++++++++|+.+++|+++.+...+.++.+++++|+
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~   80 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFC   80 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHH
Confidence            7899999999999999999999999999999999 999999999999999999999999998866555556788999999


Q ss_pred             HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +++++++||++.+.|..+......+.+.....|+..+..+.++|++||||++|+|++++.|..+.+++++.
T Consensus        81 ~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~  151 (152)
T cd00340          81 ETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD  151 (152)
T ss_pred             HHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence            74479999999554555554455566666677754445677788999999999999999998877766553

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=100.00  E-value=9.6e-33  Score=193.57  Aligned_cols=158  Identities=44%  Similarity=0.784  Sum_probs=144.3

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD   89 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~   89 (170)
                      ..+++|++.+.+|+.++|++++||++||.|||+||++|. +++.|++++++|+++|+.+++|++++|..+++++.+++++
T Consensus         3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~   81 (183)
T PRK10606          3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT   81 (183)
T ss_pred             CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence            368899999999999999999999999999999999995 7999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC--------------------ccCCccccCceeEEECCCCcEEEE
Q 030881           90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG--------------------IFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~--------------------~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                      |++.+++++||++.+.|.+|..+..+|.|++...|.                    ..+..|.||++.||||++|+++.+
T Consensus        82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r  161 (183)
T PRK10606         82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR  161 (183)
T ss_pred             HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE
Confidence            997578999999999999999999999999877762                    112479999999999999999999


Q ss_pred             eCCCCCchH--HHHHHHHHhc
Q 030881          150 YYPTTSLLS--LEHDIKKLLG  168 (170)
Q Consensus       150 ~~~~~~~~~--l~~~l~~~l~  168 (170)
                      +.+...+.+  +++.|+++|.
T Consensus       162 ~~~~~~p~~~~i~~~i~~~l~  182 (183)
T PRK10606        162 FSPDMTPEDPIVMESIKLALA  182 (183)
T ss_pred             ECCCCCCCHHHHHHHHHHHhc
Confidence            999888887  9999998885

>PTZ00256 glutathione peroxidase; Provisional

Probab=100.00  E-value=4e-32  Score=191.80  Aligned_cols=165  Identities=44%  Similarity=0.801  Sum_probs=137.1

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ....+..+|+|++.+.+|+.+++++++||++ |+.+|++||++|..++|.|++++++|+++|+.+++|++|++...++.+
T Consensus        13 ~~~~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~   92 (183)
T PTZ00256         13 IQPPTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWD   92 (183)
T ss_pred             ccCCCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCC
Confidence            3456789999999999999999999999965 556699999999999999999999999999999999988665555566


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCc-----cCCccccCceeEEECCCCcEEEEeCCCCCchH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI-----FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS  158 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~  158 (170)
                      .+++.+|++++++++||++.+.+.++.....++.++....+..     ....+|++.++||||++|+|++++.|..+.+.
T Consensus        93 ~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~  172 (183)
T PTZ00256         93 EPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNE  172 (183)
T ss_pred             HHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHH
Confidence            7889999866789999999776777776666676665544321     11367877789999999999999999999999


Q ss_pred             HHHHHHHHhcC
Q 030881          159 LEHDIKKLLGL  169 (170)
Q Consensus       159 l~~~l~~~l~~  169 (170)
                      +++.|+++|+.
T Consensus       173 l~~~I~~ll~~  183 (183)
T PTZ00256        173 MIQDIEKLLNA  183 (183)
T ss_pred             HHHHHHHHhcC
Confidence            99999998863

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.98  E-value=6.5e-31  Score=180.81  Aligned_cols=151  Identities=41%  Similarity=0.774  Sum_probs=124.6

Q ss_pred             cccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        12 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      +-+|++.+.+|+.+++++++||++||+||++||++|..++|.|++++++++++|+.+++|++++++..++++.+.+++|+
T Consensus         2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~   81 (153)
T TIGR02540         2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA   81 (153)
T ss_pred             cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999998877776678889999999


Q ss_pred             HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccc-cCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881           92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ-WNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus        92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~-~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      +++++++||++.+.+..+......+.+......     .+| |+.++||||++|+|++.+.|..+.+++++.|+++|
T Consensus        82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~-----~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~  153 (153)
T TIGR02540        82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSK-----KEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV  153 (153)
T ss_pred             HHhcCCCCCccceEecCCCCCCcHHHHHHhcCC-----CCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence            744899999996544444444444555433211     122 24459999999999999999999999999998875

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=5.5e-29  Score=164.81  Aligned_cols=158  Identities=58%  Similarity=0.992  Sum_probs=150.0

Q ss_pred             ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHH
Q 030881           11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADF   90 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~   90 (170)
                      .+-+|++.+.+|++++|++++||++||.-.||.|+.-. +...|+.|+++|+++|+.|++..+++|.+++|.+.+++++|
T Consensus         4 ~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~f   82 (162)
T COG0386           4 SIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKF   82 (162)
T ss_pred             ccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHH
Confidence            45689999999999999999999999999999999877 88999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC-ccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        91 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      +...|+.+||++...+.++..+.-+|.+++...|+ ..+..|.||++-||||++|+|+.++.+...|++++..|+++|++
T Consensus        83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~  162 (162)
T COG0386          83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE  162 (162)
T ss_pred             HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence            99999999999999999999999999999998887 45589999999999999999999999999999999999999863

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=8.7e-27  Score=156.21  Aligned_cols=163  Identities=64%  Similarity=1.094  Sum_probs=155.0

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~   86 (170)
                      ....++-+|++.|.+|+.++|++++||++|+.=.||.|+.-..+..+|+.++++|+++|+++++..+++|+.++|.+.++
T Consensus         9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E   88 (171)
T KOG1651|consen    9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE   88 (171)
T ss_pred             hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence            45567889999999999999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881           87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                      +..++..+++..||++...|.+|..+..+|.+++...++..|.+|.||++-||||++|+++.++....++.+++..|+++
T Consensus        89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~l  168 (171)
T KOG1651|consen   89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKL  168 (171)
T ss_pred             HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHH
Confidence            99999989999999999999999999999999999999888889999999999999999999999999999999999998


Q ss_pred             hcC
Q 030881          167 LGL  169 (170)
Q Consensus       167 l~~  169 (170)
                      |++
T Consensus       169 L~~  171 (171)
T KOG1651|consen  169 LAQ  171 (171)
T ss_pred             hcC
Confidence            863

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.1e-27  Score=158.80  Aligned_cols=147  Identities=18%  Similarity=0.278  Sum_probs=115.1

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+..|+++|+|+|++.+|+.++|++++||++||+|| ..++|.|..++..|++.+.+|++.|.++++||.|        +
T Consensus         3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s   74 (157)
T COG1225           3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S   74 (157)
T ss_pred             cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence            478999999999999999999999999999999999 5899999999999999999999999999999986        8


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhH-hcc-CCccCCccccCceeEEECCCCcEEEEeCCCC---CchH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK-SGK-WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT---SLLS  158 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~-~~~-~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~---~~~~  158 (170)
                      ....++|++ +++++||++  .|..+...+ .|+... ... +..+....+   ++||||++|+|++.+....   +.++
T Consensus        75 ~~~~~~F~~-k~~L~f~LL--SD~~~~v~~-~ygv~~~k~~~gk~~~~~~R---~TfvId~dG~I~~~~~~v~~~~h~~~  147 (157)
T COG1225          75 PKSHKKFAE-KHGLTFPLL--SDEDGEVAE-AYGVWGEKKMYGKEYMGIER---STFVIDPDGKIRYVWRKVKVKGHADE  147 (157)
T ss_pred             HHHHHHHHH-HhCCCceee--ECCcHHHHH-HhCcccccccCccccccccc---eEEEECCCCeEEEEecCCCCcccHHH
Confidence            899999997 889999999  555544332 233222 111 111112333   9999999999999984433   3334


Q ss_pred             HHHHHHHH
Q 030881          159 LEHDIKKL  166 (170)
Q Consensus       159 l~~~l~~~  166 (170)
                      +.+.|+++
T Consensus       148 vl~~l~~l  155 (157)
T COG1225         148 VLAALKKL  155 (157)
T ss_pred             HHHHHHHh
Confidence            44444443

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.95  E-value=1.7e-27  Score=162.57  Aligned_cols=133  Identities=28%  Similarity=0.427  Sum_probs=101.7

Q ss_pred             cCCcccccceeeC--CCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            7 QNPESIFDLSVKD--ARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         7 ~~g~~~p~f~l~~--~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+|+++|+|++++  .+|+.+++++++||++||+||++ |||+|+.++|.++++++.++++++.+++|+.+        +
T Consensus         1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~--------~   72 (146)
T PF08534_consen    1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD--------D   72 (146)
T ss_dssp             STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES--------S
T ss_pred             CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc--------C
Confidence            3799999999966  99999999999999999999999 99999999999999999999999999999987        3


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS  155 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~  155 (170)
                      ...+.++++ +++.+||++  .|..+....   .+... .....+.+ ...|+++|||++|+|++.+.|..+
T Consensus        73 ~~~~~~~~~-~~~~~~~~~--~D~~~~~~~---~~~~~-~~~~~~~~-~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   73 DPPVREFLK-KYGINFPVL--SDPDGALAK---ALGVT-IMEDPGNG-FGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             SHHHHHHHH-HTTTTSEEE--EETTSHHHH---HTTCE-EECCTTTT-SSSSEEEEEETTSBEEEEEESSBT
T ss_pred             CHHHHHHHH-hhCCCceEE--echHHHHHH---HhCCc-cccccccC-CeecEEEEEECCCEEEEEEeCCCC
Confidence            334888887 679999998  554333222   11110 00000000 134499999999999999988776

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.95  E-value=7.9e-27  Score=160.64  Aligned_cols=147  Identities=15%  Similarity=0.242  Sum_probs=112.7

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|+.+|+|++.+.+|+.+++++++||++||+||++ ||+.|..+++.|++++++++++|+++|+|+.|        
T Consensus         2 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------   73 (154)
T PRK09437          2 NPLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------   73 (154)
T ss_pred             CcCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------
Confidence            457889999999999999999999999999999999986 68899999999999999999999999999976        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccc-cCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ-WNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~-~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                      +.+++++|++ +++.+||++  .|..+....   .|.....+...+...+ ..|++||||++|+|++.+.|....+.+.+
T Consensus        74 ~~~~~~~~~~-~~~~~~~~l--~D~~~~~~~---~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~~~  147 (154)
T PRK09437         74 KPEKLSRFAE-KELLNFTLL--SDEDHQVAE---QFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHHDV  147 (154)
T ss_pred             CHHHHHHHHH-HhCCCCeEE--ECCCchHHH---HhCCCcccccccccccCcceEEEEECCCCEEEEEEcCCCcchhHHH
Confidence            6789999997 779999988  555433222   1211111100000000 01478999999999999998776666555


Q ss_pred             HHH
Q 030881          162 DIK  164 (170)
Q Consensus       162 ~l~  164 (170)
                      .|+
T Consensus       148 ~~~  150 (154)
T PRK09437        148 VLD  150 (154)
T ss_pred             HHH
Confidence            443

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.95  E-value=3.2e-27  Score=167.13  Aligned_cols=136  Identities=17%  Similarity=0.205  Sum_probs=109.3

Q ss_pred             ccCCcccccceeeCCC--CCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDAR--GHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~--g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ...|.++|+|++.+.+  |+.++++++ +||++||+||++||++|+.++|.++++.+    +++.+++|+.+       +
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~-------~  107 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK-------D  107 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------C
Confidence            3468899999999998  467777765 89999999999999999999999988754    47999999976       3


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +.++.++|++ +++.+||++. .|..+....   .           +++...|++|+||++|+|++.+.|..+.+++++.
T Consensus       108 ~~~~~~~~~~-~~~~~~~~~~-~D~~~~~~~---~-----------~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~  171 (185)
T PRK15412        108 DRQKAISWLK-ELGNPYALSL-FDGDGMLGL---D-----------LGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESE  171 (185)
T ss_pred             CHHHHHHHHH-HcCCCCceEE-EcCCccHHH---h-----------cCCCcCCeEEEECCCceEEEEEecCCCHHHHHHH
Confidence            6778889997 7799998632 454433221   1           2344445999999999999999999999999999


Q ss_pred             HHHHhc
Q 030881          163 IKKLLG  168 (170)
Q Consensus       163 l~~~l~  168 (170)
                      |+.+++
T Consensus       172 i~~~~~  177 (185)
T PRK15412        172 IKPLWE  177 (185)
T ss_pred             HHHHHH
Confidence            988875

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.94  E-value=1.9e-26  Score=161.40  Aligned_cols=144  Identities=22%  Similarity=0.319  Sum_probs=117.1

Q ss_pred             CcccccceeeCCCCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            9 PESIFDLSVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         9 g~~~p~f~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      |.++|+|++.+.+|+.++++++ +|+++||+||++|||.|..+++.|++++++++++++.+++|++|....++.++.+++
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~   80 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM   80 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence            6789999999999999999998 999999999999999999999999999999998889999999985443344678999


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC---------CCCCchH
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY---------PTTSLLS  158 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~---------~~~~~~~  158 (170)
                      +++++ +++..||++  .|..+....   .           .++.+.|++||||++|+|++...         +..+..+
T Consensus        81 ~~~~~-~~~~~~~~l--~D~~~~~~~---~-----------~~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~  143 (171)
T cd02969          81 KAKAK-EHGYPFPYL--LDETQEVAK---A-----------YGAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRD  143 (171)
T ss_pred             HHHHH-HCCCCceEE--ECCchHHHH---H-----------cCCCcCCcEEEECCCCeEEEeecccCCcccccccccHHH
Confidence            99997 789999988  554432211   1           23444569999999999998841         1224467


Q ss_pred             HHHHHHHHhcC
Q 030881          159 LEHDIKKLLGL  169 (170)
Q Consensus       159 l~~~l~~~l~~  169 (170)
                      +.++|+++|++
T Consensus       144 ~~~~i~~~l~~  154 (171)
T cd02969         144 LRAALDALLAG  154 (171)
T ss_pred             HHHHHHHHHcC
Confidence            99999998864

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.94  E-value=8.3e-27  Score=154.75  Aligned_cols=123  Identities=27%  Similarity=0.481  Sum_probs=100.9

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~   86 (170)
                      +|+++|+|++.+.+|+.+++++++||++||.||++ ||+.|..+++.|++++++++++|+.+++|+.|        +.++
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~   72 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE   72 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence            58999999999999999999999999999999998 99999999999999999999999999999986        6778


Q ss_pred             HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881           87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                      ++++.+ .++.+||++  .|..+....   .|.....     ......|++||||++|+|+++
T Consensus        73 ~~~~~~-~~~~~~~~~--~D~~~~~~~---~~~~~~~-----~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   73 IKQFLE-EYGLPFPVL--SDPDGELAK---AFGIEDE-----KDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHHH-HHTCSSEEE--EETTSHHHH---HTTCEET-----TTSEESEEEEEEETTSBEEEE
T ss_pred             hhhhhh-hhccccccc--cCcchHHHH---HcCCccc-----cCCceEeEEEEECCCCEEEeC
Confidence            999997 778999999  564433221   1111100     011145599999999999985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.94  E-value=1.7e-26  Score=156.38  Aligned_cols=138  Identities=20%  Similarity=0.319  Sum_probs=109.3

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      +++|+|++.+.+|+.+++++++||++||+|| ++||+.|..+++.|++++++++++++++++|+.|        +.+.+.
T Consensus         1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~   72 (140)
T cd03017           1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA   72 (140)
T ss_pred             CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence            4689999999999999999999999999999 5899999999999999999999889999999986        678899


Q ss_pred             HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      +|++ +++.+||++  .|..+....   .|.....+. . ......|++||||++|+|++.+.|....+++.+.|
T Consensus        73 ~~~~-~~~~~~~~l--~D~~~~~~~---~~gv~~~~~-~-~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~  139 (140)
T cd03017          73 KFAE-KYGLPFPLL--SDPDGKLAK---AYGVWGEKK-K-KYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL  139 (140)
T ss_pred             HHHH-HhCCCceEE--ECCccHHHH---HhCCccccc-c-ccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence            9997 779999988  555443222   121111100 0 01112259999999999999999988777777665

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.94  E-value=5.9e-26  Score=158.99  Aligned_cols=139  Identities=24%  Similarity=0.399  Sum_probs=118.5

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+.+.++++++++++.++.+++|+.|.       +
T Consensus        33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~-------~  105 (173)
T PRK03147         33 EKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDE-------T  105 (173)
T ss_pred             cccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCC-------C
Confidence            346789999999999999999999999999999999999999999999999999999998889999999973       6


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.+.++.+ +++.+||++  .|..+....   .           .++...|++|+||++|+|+..+.|..+.+++.+.|
T Consensus       106 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l  168 (173)
T PRK03147        106 ELAVKNFVN-RYGLTFPVA--IDKGRQVID---A-----------YGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL  168 (173)
T ss_pred             HHHHHHHHH-HhCCCceEE--ECCcchHHH---H-----------cCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence            788899996 889999988  554432221   1           23445569999999999999999988888888887


Q ss_pred             HHH
Q 030881          164 KKL  166 (170)
Q Consensus       164 ~~~  166 (170)
                      +++
T Consensus       169 ~~~  171 (173)
T PRK03147        169 EKI  171 (173)
T ss_pred             HHh
Confidence            754

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.94  E-value=7.8e-26  Score=158.47  Aligned_cols=136  Identities=18%  Similarity=0.193  Sum_probs=107.4

Q ss_pred             ccCCcccccceeeCCCCC--eecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGH--EVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~--~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ...|.++|+|++.+.+|+  .++++++ +||+++|+||++||++|+.+.|.++++.+    +++++++|+.++       
T Consensus        34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~~-------  102 (173)
T TIGR00385        34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYKD-------  102 (173)
T ss_pred             hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECCC-------
Confidence            457899999999999997  4555665 79999999999999999999999988764    369999999752       


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +.++..+|++ +++.+||.+. .|..+....   .           +++...|++|+||++|+|++++.|..+.+++++.
T Consensus       103 ~~~~~~~~~~-~~~~~f~~v~-~D~~~~~~~---~-----------~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~  166 (173)
T TIGR00385       103 QSQNALKFLK-ELGNPYQAIL-IDPNGKLGL---D-----------LGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEG  166 (173)
T ss_pred             ChHHHHHHHH-HcCCCCceEE-ECCCCchHH---h-----------cCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHH
Confidence            5566778886 7788888431 455443322   1           1233334999999999999999999999999999


Q ss_pred             HHHHhc
Q 030881          163 IKKLLG  168 (170)
Q Consensus       163 l~~~l~  168 (170)
                      |++++.
T Consensus       167 l~~~~~  172 (173)
T TIGR00385       167 FLPAME  172 (173)
T ss_pred             HHHHhh
Confidence            998875

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.94  E-value=2.3e-25  Score=155.15  Aligned_cols=144  Identities=15%  Similarity=0.098  Sum_probs=106.1

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|+++|+|++.+.+|+.+++++++||++||+||++| |++|..+++.|+++++++.  ++++++||.|        
T Consensus        16 ~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D--------   85 (167)
T PRK00522         16 SLPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD--------   85 (167)
T ss_pred             CCCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------
Confidence            4567899999999999999999999999999999999999 9999999999999999993  7999999986        


Q ss_pred             ChHHHHHHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccCC-ccCCccccCceeEEECCCCcEEEEeCCC--CCchH
Q 030881           83 SNDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPT--TSLLS  158 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~p~~~lid~~G~i~~~~~~~--~~~~~  158 (170)
                      +....++|.+ ++++. ++++  .|..+.....  .|.....|. ..|..   .|++||||++|+|++.+.+.  .+..+
T Consensus        86 ~~~~~~~f~~-~~~~~~~~~l--sD~~~~~~~~--~~gv~~~~~~~~g~~---~r~tfvId~~G~I~~~~~~~~~~~~~~  157 (167)
T PRK00522         86 LPFAQKRFCG-AEGLENVITL--SDFRDHSFGK--AYGVAIAEGPLKGLL---ARAVFVLDENNKVVYSELVPEITNEPD  157 (167)
T ss_pred             CHHHHHHHHH-hCCCCCceEe--ecCCccHHHH--HhCCeecccccCCce---eeEEEEECCCCeEEEEEECCCcCCCCC
Confidence            5677888887 77876 6777  5532212221  221111110 01112   34999999999999998432  33334


Q ss_pred             HHHHHHH
Q 030881          159 LEHDIKK  165 (170)
Q Consensus       159 l~~~l~~  165 (170)
                      +++.|+.
T Consensus       158 ~~~~l~~  164 (167)
T PRK00522        158 YDAALAA  164 (167)
T ss_pred             HHHHHHH
Confidence            5555544

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.93  E-value=1.7e-25  Score=153.01  Aligned_cols=130  Identities=19%  Similarity=0.287  Sum_probs=104.2

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCC-cEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      +..|+++|+|++.+.+|+.+++++++| |++||.|| ++||+.|..+++.|++++++++++|+++++|+.|        +
T Consensus         1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~   72 (149)
T cd03018           1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------S   72 (149)
T ss_pred             CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------C
Confidence            467999999999999999999999999 99999888 8999999999999999999999889999999986        5


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecC--CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVN--GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                      .+.+++|.+ +++.+||++  .|..  +..+.   .+.....+    .++ +.|++||||++|+|++.+.|..
T Consensus        73 ~~~~~~~~~-~~~~~~~~~--~D~~~~~~~~~---~~g~~~~~----~~~-~~~~~~lid~~G~v~~~~~~~~  134 (149)
T cd03018          73 PFSLRAWAE-ENGLTFPLL--SDFWPHGEVAK---AYGVFDED----LGV-AERAVFVIDRDGIIRYAWVSDD  134 (149)
T ss_pred             HHHHHHHHH-hcCCCceEe--cCCCchhHHHH---HhCCcccc----CCC-ccceEEEECCCCEEEEEEecCC
Confidence            678899987 779999988  4533  22211   12111111    012 2458899999999999988765

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.93  E-value=4.9e-25  Score=154.47  Aligned_cols=141  Identities=18%  Similarity=0.197  Sum_probs=103.9

Q ss_pred             CCcccccceeeCCCC----CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            8 NPESIFDLSVKDARG----HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g----~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      +|+++|+|++.+.+|    +.+++++++||++||+|| ++||++|..+++.|++++++|.+.|+.+++||.|        
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d--------   72 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD--------   72 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence            489999999999887    789999999999999999 7999999999999999999999999999999986        


Q ss_pred             ChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--
Q 030881           83 SNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--  154 (170)
Q Consensus        83 ~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--  154 (170)
                      +.+..+++.+..      .+.+||++  .|..+..+.   .|.....+  .+..+   |++||||++|+|++.+.+..  
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~~~~---~~gv~~~~--~~~~~---p~~~lID~~G~I~~~~~~~~~~  142 (173)
T cd03015          73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKKISR---DYGVLDEE--EGVAL---RGTFIIDPEGIIRHITVNDLPV  142 (173)
T ss_pred             CHHHHHHHHHhhhhhCCccCcceeEE--ECCchhHHH---HhCCcccc--CCcee---eEEEEECCCCeEEEEEecCCCC
Confidence            344445555421      35778888  565544332   12111111  01223   49999999999999985543  


Q ss_pred             --CchHHHHHHHHH
Q 030881          155 --SLLSLEHDIKKL  166 (170)
Q Consensus       155 --~~~~l~~~l~~~  166 (170)
                        +.+++.+.|+.+
T Consensus       143 ~~~~~~il~~l~~~  156 (173)
T cd03015         143 GRSVDETLRVLDAL  156 (173)
T ss_pred             CCCHHHHHHHHHHh
Confidence              334455555443

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR03137 AhpC peroxiredoxin

Probab=99.93  E-value=2.2e-25  Score=157.89  Aligned_cols=129  Identities=17%  Similarity=0.145  Sum_probs=97.2

Q ss_pred             cCCcccccceeeC-CCCC--eecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            7 QNPESIFDLSVKD-ARGH--EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         7 ~~g~~~p~f~l~~-~~g~--~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..|+++|+|++.+ .+|.  .+++++++||++||+|| ++||++|..+++.|++++++|+++|+++++||.|        
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D--------   74 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD--------   74 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence            6799999999998 5776  68888999999999999 9999999999999999999999999999999987        


Q ss_pred             ChHHHHHHHHh---hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           83 SNDQIADFVCT---RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        83 ~~~~~~~~~~~---~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                      +....++|...   ..+++||++  .|..+..+. .|+  ....  ..|.   +.|++||||++|+|++.+...
T Consensus        75 ~~~~~~~~~~~~~~~~~l~fpll--sD~~~~~a~-~~g--v~~~--~~g~---~~p~tfiID~~G~I~~~~~~~  138 (187)
T TIGR03137        75 THFVHKAWHDTSEAIGKITYPML--GDPTGVLTR-NFG--VLIE--EAGL---ADRGTFVIDPEGVIQAVEITD  138 (187)
T ss_pred             CHHHHHHHHhhhhhccCcceeEE--ECCccHHHH-HhC--Cccc--CCCc---eeeEEEEECCCCEEEEEEEeC
Confidence            44555555542   135788988  555433222 111  1100  0011   235999999999999997543

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.92  E-value=7.1e-25  Score=146.24  Aligned_cols=123  Identities=15%  Similarity=0.159  Sum_probs=98.4

Q ss_pred             cccccceeeCCCC--CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881           10 ESIFDLSVKDARG--HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus        10 ~~~p~f~l~~~~g--~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      +++|+|++.+.+|  ..+++++++||++||+||++||++|+.++|.++++.+++   ++++++|+.+       ++.+.+
T Consensus         1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~   70 (127)
T cd03010           1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENA   70 (127)
T ss_pred             CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHH
Confidence            3689999999998  889999999999999999999999999999999998775   4999999976       478899


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchH
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS  158 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~  158 (170)
                      ++|++ +++..|+.+. .|.++....   .           +++...|++|+||++|+|++++.|..+.+.
T Consensus        71 ~~~~~-~~~~~~~~~~-~D~~~~~~~---~-----------~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~  125 (127)
T cd03010          71 LAWLA-RHGNPYAAVG-FDPDGRVGI---D-----------LGVYGVPETFLIDGDGIIRYKHVGPLTPEV  125 (127)
T ss_pred             HHHHH-hcCCCCceEE-ECCcchHHH---h-----------cCCCCCCeEEEECCCceEEEEEeccCChHh
Confidence            99987 7788876432 454333221   1           223334499999999999999998777654

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.92  E-value=6.6e-25  Score=146.26  Aligned_cols=113  Identities=22%  Similarity=0.282  Sum_probs=92.0

Q ss_pred             CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCc
Q 030881           22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI  101 (170)
Q Consensus        22 g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  101 (170)
                      |+.+++++++||++||+||++||++|+.++|.|++++++++++++.+++|+.+.+..  .++.++++++++ +++++||+
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~--~~~~~~~~~~~~-~~~~~~p~   89 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAF--ERDLANVKSAVL-RYGITYPV   89 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccc--ccCHHHHHHHHH-HcCCCCCE
Confidence            468999999999999999999999999999999999999999899999998754321  247889999997 88999998


Q ss_pred             eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881          102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                      +  .|..+....   .           +++.+.|++||||++|+|++++.|.
T Consensus        90 ~--~D~~~~~~~---~-----------~~v~~~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          90 A--NDNDYATWR---A-----------YGNQYWPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             E--ECCchHHHH---H-----------hCCCcCCeEEEECCCCcEEEEEecC
Confidence            8  554432221   1           2333445999999999999998774

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.92  E-value=1.7e-24  Score=147.18  Aligned_cols=135  Identities=16%  Similarity=0.119  Sum_probs=101.0

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~   86 (170)
                      .|+++|+|++.+.+|+.+++++++||++||+||++| |++|+.+++.|++++++++  |+.+++|+.|        +.+.
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~   71 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA   71 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence            689999999999999999999999999999999988 7999999999999999984  7999999986        5667


Q ss_pred             HHHHHHhhcCC-CCCceEEeecC-CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--CchHHHHH
Q 030881           87 IADFVCTRFKS-EFPIFEKIDVN-GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--SLLSLEHD  162 (170)
Q Consensus        87 ~~~~~~~~~~~-~~p~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--~~~~l~~~  162 (170)
                      .++|.+ +++. +||++  .|.. +.... .|.  .. .+ ..+..   .|++||||++|+|++.+.|..  ...++++.
T Consensus        72 ~~~~~~-~~~~~~~~~l--~D~~~~~~~~-~~g--v~-~~-~~~~~---~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~  140 (143)
T cd03014          72 QKRWCG-AEGVDNVTTL--SDFRDHSFGK-AYG--VL-IK-DLGLL---ARAVFVIDENGKVIYVELVPEITDEPDYEAA  140 (143)
T ss_pred             HHHHHH-hcCCCCceEe--ecCcccHHHH-HhC--Ce-ec-cCCcc---ceEEEEEcCCCeEEEEEECCCcccCCCHHHH
Confidence            788886 6665 78888  4543 22211 111  10 00 01111   349999999999999987643  22345544


Q ss_pred             H
Q 030881          163 I  163 (170)
Q Consensus       163 l  163 (170)
                      |
T Consensus       141 ~  141 (143)
T cd03014         141 L  141 (143)
T ss_pred             h
Confidence            4

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.92  E-value=2.9e-24  Score=153.75  Aligned_cols=143  Identities=24%  Similarity=0.395  Sum_probs=103.9

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      +..|+++|+|++.+..| .+++++++||++|| +||++||++|..+++.|++++++|+++|+++++||+|        +.
T Consensus         2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~   72 (202)
T PRK13190          2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI   72 (202)
T ss_pred             CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence            46899999999999888 69999999998776 6889999999999999999999999999999999987        33


Q ss_pred             HHHHHHHH---hhcC--CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe----CCCCC
Q 030881           85 DQIADFVC---TRFK--SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY----YPTTS  155 (170)
Q Consensus        85 ~~~~~~~~---~~~~--~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~----~~~~~  155 (170)
                      ....++++   ++++  ++||++  .|.++..+. .|+...    ...|..+   |++||||++|+|++..    ....+
T Consensus        73 ~~~~~w~~~~~~~~g~~~~fPll--~D~~~~ia~-~ygv~~----~~~g~~~---p~~fiId~~G~I~~~~~~~~~~gr~  142 (202)
T PRK13190         73 YSHIAWLRDIEERFGIKIPFPVI--ADIDKELAR-EYNLID----ENSGATV---RGVFIIDPNQIVRWMIYYPAETGRN  142 (202)
T ss_pred             HHHHHHHHhHHHhcCCCceEEEE--ECCChHHHH-HcCCcc----ccCCcEE---eEEEEECCCCEEEEEEEeCCCCCCC
Confidence            44333332   2444  579998  565544332 122110    0111234   4999999999999885    22345


Q ss_pred             chHHHHHHHHHh
Q 030881          156 LLSLEHDIKKLL  167 (170)
Q Consensus       156 ~~~l~~~l~~~l  167 (170)
                      .+++.+.|+++.
T Consensus       143 ~~ellr~l~~l~  154 (202)
T PRK13190        143 IDEIIRITKALQ  154 (202)
T ss_pred             HHHHHHHHHHhh
Confidence            666666666654

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.92  E-value=1.8e-24  Score=146.78  Aligned_cols=135  Identities=18%  Similarity=0.187  Sum_probs=101.6

Q ss_pred             ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCC-ChhhHHHHHHHHHHhccCC---cEEEEeecCCCCCCCCCChHH
Q 030881           11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKDQG---LEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~~---v~~v~is~d~~~~~~~~~~~~   86 (170)
                      .+|+|++.+.+|+.+++.+++||++||+||++||++ |..+++.++++++++++++   +++++|+.|.    ..++.+.
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~----~~d~~~~   76 (142)
T cd02968           1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP----ERDTPEV   76 (142)
T ss_pred             CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC----CCCCHHH
Confidence            379999999999999999999999999999999997 9999999999999998875   9999999973    2256788


Q ss_pred             HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC---ccCCccccCceeEEECCCCcEEEEeCC
Q 030881           87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG---IFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~---~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +++|++ +++.+||++.  +.......-...+.....+.   ..+..+.|.|.+||||++|+|++.+.+
T Consensus        77 ~~~~~~-~~~~~~~~l~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~  142 (142)
T cd02968          77 LKAYAK-AFGPGWIGLT--GTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG  142 (142)
T ss_pred             HHHHHH-HhCCCcEEEE--CCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence            999997 7788999883  32211111111111111111   011235567789999999999998754

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.91  E-value=7.8e-24  Score=152.48  Aligned_cols=146  Identities=18%  Similarity=0.272  Sum_probs=103.7

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ..|+++|+|++.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++|+++++||+|..     .+..
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~-----~~~~   77 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV-----FSHI   77 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH-----HHHH
Confidence            68999999999999999888899999985 67889999999999999999999999999999999999731     1122


Q ss_pred             HHHHHHHh--hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC-C---CCchHH
Q 030881           86 QIADFVCT--RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP-T---TSLLSL  159 (170)
Q Consensus        86 ~~~~~~~~--~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~-~---~~~~~l  159 (170)
                      ++.+++++  ..+++||++  .|..+..+. .|+..   .++.....+   |++||||++|+|++.+.. .   .+.+++
T Consensus        78 ~w~~~i~~~~~~~i~fPil--~D~~~~va~-~yg~~---~~~~~~~~~---R~tfIID~dG~Ir~~~~~p~~~gr~~~ei  148 (215)
T PRK13599         78 KWVEWIKDNTNIAIPFPVI--ADDLGKVSN-QLGMI---HPGKGTNTV---RAVFIVDDKGTIRLIMYYPQEVGRNVDEI  148 (215)
T ss_pred             HHHHhHHHhcCCCCceeEE--ECCCchHHH-HcCCC---ccCCCCcee---eEEEEECCCCEEEEEEEcCCCCCCCHHHH
Confidence            33444442  246789999  565554332 22211   111100123   499999999999999532 1   234455


Q ss_pred             HHHHHHH
Q 030881          160 EHDIKKL  166 (170)
Q Consensus       160 ~~~l~~~  166 (170)
                      .+.|+++
T Consensus       149 lr~l~~l  155 (215)
T PRK13599        149 LRALKAL  155 (215)
T ss_pred             HHHHHHh
Confidence            5555543

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.91  E-value=8.5e-24  Score=167.91  Aligned_cols=138  Identities=20%  Similarity=0.179  Sum_probs=108.1

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ...++.+|+|++.|.+|+.++++  +||++||+|||+||++|+.++|.|++++++++..++.||+|+++....  ..+.+
T Consensus        32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~--e~~~~  107 (521)
T PRK14018         32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLH--EKKDG  107 (521)
T ss_pred             ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccc--cccHH
Confidence            34566899999999999999988  799999999999999999999999999999987789999999753221  23456


Q ss_pred             HHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           86 QIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        86 ~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      +..++.+ ..+. ++|++  .|..+..+.   .           .++...|+++|||++|+|+..+.|..+.+++.+.|+
T Consensus       108 ~~~~~~~-~~~y~~~pV~--~D~~~~lak---~-----------fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie  170 (521)
T PRK14018        108 DFQKWYA-GLDYPKLPVL--TDNGGTLAQ---S-----------LNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR  170 (521)
T ss_pred             HHHHHHH-hCCCccccee--ccccHHHHH---H-----------cCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence            6777775 4343 46766  444332211   1           234455599999999999999999999988888887

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.91  E-value=1.9e-23  Score=148.18  Aligned_cols=132  Identities=12%  Similarity=0.108  Sum_probs=98.6

Q ss_pred             cccCCcccccceeeCCCCCeecCC--CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLS--TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~--~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .+..|+++|+|+++|.+|+.+++.  +++||+++|+||++|||+|+.++|.+++++++.   ++.+++|+.+        
T Consensus        45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~--------  113 (189)
T TIGR02661        45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG--------  113 (189)
T ss_pred             CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC--------
Confidence            357899999999999999999995  569999999999999999999999999988653   5778888743        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +.++..+|++ +++.+++.+.   ..+...   ..           +++...|++|+||++|+|+++.. ....+.+++.
T Consensus       114 ~~~~~~~~~~-~~~~~~~~~~---~~~~i~---~~-----------y~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~l  174 (189)
T TIGR02661       114 TPAEHRRFLK-DHELGGERYV---VSAEIG---MA-----------FQVGKIPYGVLLDQDGKIRAKGL-TNTREHLESL  174 (189)
T ss_pred             CHHHHHHHHH-hcCCCcceee---chhHHH---Hh-----------ccCCccceEEEECCCCeEEEccC-CCCHHHHHHH
Confidence            6788899997 7788876542   111111   11           22333449999999999998732 2344556666


Q ss_pred             HHHH
Q 030881          163 IKKL  166 (170)
Q Consensus       163 l~~~  166 (170)
                      |+++
T Consensus       175 l~~l  178 (189)
T TIGR02661       175 LEAD  178 (189)
T ss_pred             HHHH
Confidence            5543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.91  E-value=1.2e-23  Score=148.32  Aligned_cols=142  Identities=13%  Similarity=0.156  Sum_probs=105.0

Q ss_pred             ccCCcccccceeeCC-CC--CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDA-RG--HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~-~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      +..|.++|+|++... +|  ..++|++++||++||+|| ++||++|..+++.|++++++|.++|+++++||.|       
T Consensus         2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D-------   74 (187)
T PRK10382          2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD-------   74 (187)
T ss_pred             CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence            578999999998763 34  567888999999999999 9999999999999999999999999999999986       


Q ss_pred             CChHHHHHHHHhh---cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC----C
Q 030881           82 GSNDQIADFVCTR---FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT----T  154 (170)
Q Consensus        82 ~~~~~~~~~~~~~---~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~----~  154 (170)
                       +....++|.+..   .+++||++  .|.++.... .|+...   + .  .++ ..|++||||++|+|++.+...    .
T Consensus        75 -~~~~~~a~~~~~~~~~~l~fpll--sD~~~~ia~-~ygv~~---~-~--~g~-~~r~tfIID~~G~I~~~~~~~~~~~~  143 (187)
T PRK10382         75 -THFTHKAWHSSSETIAKIKYAMI--GDPTGALTR-NFDNMR---E-D--EGL-ADRATFVVDPQGIIQAIEVTAEGIGR  143 (187)
T ss_pred             -CHHHHHHHHHhhccccCCceeEE--EcCchHHHH-HcCCCc---c-c--CCc-eeeEEEEECCCCEEEEEEEeCCCCCC
Confidence             677788887532   47889999  555433322 122110   0 0  112 124999999999999996443    2


Q ss_pred             CchHHHHHHHH
Q 030881          155 SLLSLEHDIKK  165 (170)
Q Consensus       155 ~~~~l~~~l~~  165 (170)
                      +.+++.+.|++
T Consensus       144 ~~~eil~~l~a  154 (187)
T PRK10382        144 DASDLLRKIKA  154 (187)
T ss_pred             CHHHHHHHHHh
Confidence            44455555543

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.91  E-value=2.4e-23  Score=140.92  Aligned_cols=129  Identities=19%  Similarity=0.234  Sum_probs=101.6

Q ss_pred             ccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881           11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD   89 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~   89 (170)
                      .+|+|++.|.+|+.+++++++||++||+|| ++||++|..+++.|+++++++++.++.+++|+.|        +.+.+++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~   72 (140)
T cd02971           1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA   72 (140)
T ss_pred             CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence            479999999999999999999999999999 7899999999999999999998889999999986        5678888


Q ss_pred             HHHhhc-CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881           90 FVCTRF-KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS  155 (170)
Q Consensus        90 ~~~~~~-~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~  155 (170)
                      |.+ ++ +.+||++  .|..+....   .+.....+..  ......|++||||++|+|++.+.|...
T Consensus        73 ~~~-~~~~~~~~~l--~D~~~~~~~---~~g~~~~~~~--~~~~~~p~~~lid~~g~i~~~~~~~~~  131 (140)
T cd02971          73 WAE-KEGGLNFPLL--SDPDGEFAK---AYGVLIEKSA--GGGLAARATFIIDPDGKIRYVEVEPLP  131 (140)
T ss_pred             HHh-cccCCCceEE--ECCChHHHH---HcCCcccccc--ccCceeEEEEEECCCCcEEEEEecCCC
Confidence            887 66 8889988  555443222   1111111110  011234599999999999999888665

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.91  E-value=2.2e-23  Score=136.47  Aligned_cols=109  Identities=14%  Similarity=0.223  Sum_probs=87.6

Q ss_pred             ccceeeCCCCCeecCCCCC-CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           13 FDLSVKDARGHEVDLSTYK-GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        13 p~f~l~~~~g~~~~l~~~~-gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      |+|++.+.+|+.+++++++ ||++||+||++||++|+.++|.++++++++.+ ++.++.++ +       ++.++.++++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~   71 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL   71 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence            7899999999999999997 99999999999999999999999999888754 48888775 3       3678888998


Q ss_pred             HhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881           92 CTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        92 ~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                      + +++. .+|++.  +.  . ...  .           +++...|++|+||++|+|+++
T Consensus        72 ~-~~~~~~~p~~~--~~--~-~~~--~-----------~~~~~~P~~~vid~~G~v~~~  111 (114)
T cd02967          72 K-KHGLEAFPYVL--SA--E-LGM--A-----------YQVSKLPYAVLLDEAGVIAAK  111 (114)
T ss_pred             H-HhCCCCCcEEe--cH--H-HHh--h-----------cCCCCcCeEEEECCCCeEEec
Confidence            7 7787 489873  21  1 111  1           233444599999999999987

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.90  E-value=1.8e-23  Score=179.19  Aligned_cols=144  Identities=17%  Similarity=0.172  Sum_probs=117.5

Q ss_pred             ccCCcccccceeeC--CCCCeecC-CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKD--ARGHEVDL-STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         6 ~~~g~~~p~f~l~~--~~g~~~~l-~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ...|.++|+|...+  .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.+|+|+++.++.  .+
T Consensus       391 ~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~--~~  468 (1057)
T PLN02919        391 KKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDN--EK  468 (1057)
T ss_pred             cccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccc--cc
Confidence            45799999999876  68999988 579999999999999999999999999999999999899999998754422  23


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +.+++++++. +++++||++  .|.......   .           .++...|+++|||++|+|++++.|....+++.+.
T Consensus       469 ~~~~~~~~~~-~~~i~~pvv--~D~~~~~~~---~-----------~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~  531 (1057)
T PLN02919        469 DLEAIRNAVL-RYNISHPVV--NDGDMYLWR---E-----------LGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDL  531 (1057)
T ss_pred             cHHHHHHHHH-HhCCCccEE--ECCchHHHH---h-----------cCCCccceEEEECCCCeEEEEEecccCHHHHHHH
Confidence            5678888986 889999988  443332111   1           2344555999999999999999998888889999


Q ss_pred             HHHHhc
Q 030881          163 IKKLLG  168 (170)
Q Consensus       163 l~~~l~  168 (170)
                      |++++.
T Consensus       532 l~~~l~  537 (1057)
T PLN02919        532 VEAALQ  537 (1057)
T ss_pred             HHHHHH
Confidence            888763

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.90  E-value=1.3e-23  Score=151.38  Aligned_cols=145  Identities=17%  Similarity=0.272  Sum_probs=101.2

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .++..|+++|+|++.+.+|+....++++||++|| +||++||++|..+++.|++++++|+++|+++++||+|        
T Consensus         5 ~~~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------   76 (215)
T PRK13191          5 RIPLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------   76 (215)
T ss_pred             ccccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------
Confidence            4567899999999999999744445589997776 7789999999999999999999999999999999997        


Q ss_pred             ChHH---HHHHHHh--hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC---
Q 030881           83 SNDQ---IADFVCT--RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT---  154 (170)
Q Consensus        83 ~~~~---~~~~~~~--~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~---  154 (170)
                      +...   +.++.++  ..+++||++  .|.++..+. .|+...   .+..+..+   |++||||++|+|++.+.+..   
T Consensus        77 s~~~h~aw~~~~~~~~~~~i~fPll--sD~~~~ia~-~ygv~~---~~~~~~~~---r~tfIID~~G~Ir~~~~~~~~~g  147 (215)
T PRK13191         77 SNISHIEWVMWIEKNLKVEVPFPII--ADPMGNVAK-RLGMIH---AESSTATV---RAVFIVDDKGTVRLILYYPMEIG  147 (215)
T ss_pred             CHHHHHHHHhhHHHhcCCCCceEEE--ECCchHHHH-HcCCcc---cccCCcee---EEEEEECCCCEEEEEEecCCCCC
Confidence            3343   3344432  236789999  565544332 122110   00001233   49999999999999854332   


Q ss_pred             -CchHHHHHHHH
Q 030881          155 -SLLSLEHDIKK  165 (170)
Q Consensus       155 -~~~~l~~~l~~  165 (170)
                       +.+++.+.|++
T Consensus       148 r~~~eilr~l~a  159 (215)
T PRK13191        148 RNIDEILRAIRA  159 (215)
T ss_pred             CCHHHHHHHHHH
Confidence             34444444444

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.90  E-value=1e-23  Score=151.14  Aligned_cols=141  Identities=14%  Similarity=0.225  Sum_probs=99.3

Q ss_pred             CCcccccceeeCCCCCeecCCCCCC-cEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKG-KVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~g-k~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      .|+++|+|++.+.+|. +++++++| |++ |++||++|||.|..+++.|++++++|+++|+++++||+|        +..
T Consensus         1 vG~~aP~F~~~~~~g~-~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~   71 (203)
T cd03016           1 LGDTAPNFEADTTHGP-IKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE   71 (203)
T ss_pred             CcCCCCCeEEecCCCc-EeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence            4889999999998884 89999988 665 557889999999999999999999999999999999997        344


Q ss_pred             HHHHHHHh-----hcCCCCCceEEeecCCCCchhHHHHhHhccCC-ccCCccccCceeEEECCCCcEEEEeCCCC----C
Q 030881           86 QIADFVCT-----RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTT----S  155 (170)
Q Consensus        86 ~~~~~~~~-----~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~i~~~p~~~lid~~G~i~~~~~~~~----~  155 (170)
                      ...+|.+.     +.+++||++  .|..+..+. .|+..   .++ ..+..+   |++||||++|+|++.+.+..    +
T Consensus        72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~~ia~-~yg~~---~~~~~~~~~~---r~~fiID~~G~I~~~~~~~~~~gr~  142 (203)
T cd03016          72 SHIKWIEDIEEYTGVEIPFPII--ADPDREVAK-LLGMI---DPDAGSTLTV---RAVFIIDPDKKIRLILYYPATTGRN  142 (203)
T ss_pred             HHHHHHhhHHHhcCCCCceeEE--ECchHHHHH-HcCCc---cccCCCCcee---eEEEEECCCCeEEEEEecCCCCCCC
Confidence            44444431     157889999  555443322 11111   110 011223   48999999999999975533    3


Q ss_pred             chHHHHHHHHH
Q 030881          156 LLSLEHDIKKL  166 (170)
Q Consensus       156 ~~~l~~~l~~~  166 (170)
                      .+++.+.|+++
T Consensus       143 ~~ell~~l~~l  153 (203)
T cd03016         143 FDEILRVVDAL  153 (203)
T ss_pred             HHHHHHHHHHH
Confidence            34455555443

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PRK15000 peroxidase; Provisional

Probab=99.90  E-value=5.8e-23  Score=146.66  Aligned_cols=132  Identities=16%  Similarity=0.230  Sum_probs=94.9

Q ss_pred             ccCCcccccceeeCCC--CC---eecCCCC-CCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881            6 IQNPESIFDLSVKDAR--GH---EVDLSTY-KGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE   78 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~--g~---~~~l~~~-~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~   78 (170)
                      ...|+++|+|++.+..  |+   .++++++ +||++||+||+ +||++|..+++.|++++++|+++|+++++||.|    
T Consensus         2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----   77 (200)
T PRK15000          2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----   77 (200)
T ss_pred             CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC----
Confidence            3479999999999864  44   3466665 89999999998 599999999999999999999999999999987    


Q ss_pred             CCCCChHHHHHHHH---hhcC---CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           79 EEPGSNDQIADFVC---TRFK---SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        79 ~~~~~~~~~~~~~~---~~~~---~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                          +....+.|.+   +..+   ++||++  .|.++..+. .|+...   + ..|..+   |++||||++|+|++.+.+
T Consensus        78 ----~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~ia~-~ygv~~---~-~~g~~~---r~tfiID~~G~I~~~~~~  143 (200)
T PRK15000         78 ----SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKREIQK-AYGIEH---P-DEGVAL---RGSFLIDANGIVRHQVVN  143 (200)
T ss_pred             ----CHHHHHHHHhhHHHhCCccccCceEE--ECCCcHHHH-HcCCcc---C-CCCcEE---eEEEEECCCCEEEEEEec
Confidence                3444444432   2333   589999  565544332 122110   0 111234   499999999999999766


Q ss_pred             CCC
Q 030881          153 TTS  155 (170)
Q Consensus       153 ~~~  155 (170)
                      ...
T Consensus       144 ~~~  146 (200)
T PRK15000        144 DLP  146 (200)
T ss_pred             CCC
Confidence            443

>PRK13189 peroxiredoxin; Provisional

Probab=99.90  E-value=6.9e-23  Score=148.41  Aligned_cols=145  Identities=20%  Similarity=0.341  Sum_probs=101.2

Q ss_pred             ccccCCcccccceeeCCCCCeecCCC-CCCcEEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLST-YKGKVLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~-~~gk~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      .++..|+++|+|++.+.+|. +++.+ ++||++|| +||++||++|..+++.|++++++|+++|+++++||+|       
T Consensus         7 ~~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D-------   78 (222)
T PRK13189          7 RMPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID-------   78 (222)
T ss_pred             ccccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC-------
Confidence            44678999999999999986 67776 59996654 7789999999999999999999999999999999997       


Q ss_pred             CChHHHHHHHH---hh--cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--
Q 030881           82 GSNDQIADFVC---TR--FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--  154 (170)
Q Consensus        82 ~~~~~~~~~~~---~~--~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--  154 (170)
                       +.....+|.+   +.  .+++||++  .|..+..+. .|+..   .++..+..   .|++||||++|+|++...+..  
T Consensus        79 -~~~~h~aw~~~~~~~~g~~i~fPll--sD~~~~ia~-~ygv~---~~~~~~~~---~r~tfIID~~G~Ir~~~~~~~~~  148 (222)
T PRK13189         79 -QVFSHIKWVEWIKEKLGVEIEFPII--ADDRGEIAK-KLGMI---SPGKGTNT---VRAVFIIDPKGIIRAILYYPQEV  148 (222)
T ss_pred             -CHHHHHHHHHhHHHhcCcCcceeEE--EcCccHHHH-HhCCC---ccccCCCc---eeEEEEECCCCeEEEEEecCCCC
Confidence             3444444443   12  24689988  565544332 12211   01110112   349999999999998865322  


Q ss_pred             --CchHHHHHHHHH
Q 030881          155 --SLLSLEHDIKKL  166 (170)
Q Consensus       155 --~~~~l~~~l~~~  166 (170)
                        +.+++.+.|+++
T Consensus       149 gr~~~eilr~l~al  162 (222)
T PRK13189        149 GRNMDEILRLVKAL  162 (222)
T ss_pred             CCCHHHHHHHHHHh
Confidence              344555555543

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.90  E-value=1.1e-22  Score=149.36  Aligned_cols=142  Identities=18%  Similarity=0.147  Sum_probs=101.5

Q ss_pred             cccCCcccccceeeC-CCC--CeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            5 FIQNPESIFDLSVKD-ARG--HEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~-~~g--~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      .+..|+++|+|++.+ .+|  ..++++++ +||++|++|| ++||++|..+++.|++++++|+++|+++++||.|     
T Consensus        67 ~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D-----  141 (261)
T PTZ00137         67 SSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD-----  141 (261)
T ss_pred             cccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            457999999999987 455  46899998 8988888888 8999999999999999999999999999999987     


Q ss_pred             CCCChHHHHHHHHh---h---cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           80 EPGSNDQIADFVCT---R---FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~---~---~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                         +....++|.+.   +   .+++||++  .|.++..+. .|+..     ...|..+   |++||||++|+|++.+...
T Consensus       142 ---s~~~h~aw~~~~~~~~g~~~l~fPlL--sD~~~~iak-ayGv~-----~~~g~a~---R~tFIID~dG~I~~~~~~~  207 (261)
T PTZ00137        142 ---SPFSHKAWKELDVRQGGVSPLKFPLF--SDISREVSK-SFGLL-----RDEGFSH---RASVLVDKAGVVKHVAVYD  207 (261)
T ss_pred             ---CHHHHHHHHhhhhhhccccCcceEEE--EcCChHHHH-HcCCC-----CcCCcee---cEEEEECCCCEEEEEEEeC
Confidence               44445555431   1   46789999  555433222 12111     0011233   4999999999999996322


Q ss_pred             ----CCchHHHHHHHH
Q 030881          154 ----TSLLSLEHDIKK  165 (170)
Q Consensus       154 ----~~~~~l~~~l~~  165 (170)
                          .+.+++.+.|++
T Consensus       208 ~~~gr~v~eiLr~l~a  223 (261)
T PTZ00137        208 LGLGRSVDETLRLFDA  223 (261)
T ss_pred             CCCCCCHHHHHHHHHH
Confidence                244445554443

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.89  E-value=1.1e-22  Score=145.48  Aligned_cols=148  Identities=17%  Similarity=0.201  Sum_probs=103.6

Q ss_pred             CccccccCCcccccceeeC----CCCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881            1 MTSQFIQNPESIFDLSVKD----ARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus         1 ~~~~~~~~g~~~p~f~l~~----~~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~   75 (170)
                      |.+.....|+++|+|++.+    .+|..+++++++||++||+||+ +||+.|..+++.|++++++|+++|+++++||.| 
T Consensus         1 ~~~~~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d-   79 (199)
T PTZ00253          1 MSCGDAKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD-   79 (199)
T ss_pred             CCccccccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-
Confidence            5566678999999999765    4568899999999999999995 889999999999999999999999999999987 


Q ss_pred             CCCCCCCChHHHHHHHHh-h-----cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881           76 FGEEEPGSNDQIADFVCT-R-----FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~-~-----~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                             +.....++... +     .+.+||++  .|..+.... .|+...  ..  .|..+   |++||||++|+|++.
T Consensus        80 -------~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~ia~-~ygv~~--~~--~g~~~---r~~fiID~~G~i~~~  142 (199)
T PTZ00253         80 -------SEYAHLQWTLQERKKGGLGTMAIPML--ADKTKSIAR-SYGVLE--EE--QGVAY---RGLFIIDPKGMLRQI  142 (199)
T ss_pred             -------CHHHHHHHHhChHhhCCccccccceE--ECcHhHHHH-HcCCcc--cC--CCceE---EEEEEECCCCEEEEE
Confidence                   33333333211 1     13689999  555443322 121110  00  01123   499999999999998


Q ss_pred             eCCCCCch-HHHHHHHHH
Q 030881          150 YYPTTSLL-SLEHDIKKL  166 (170)
Q Consensus       150 ~~~~~~~~-~l~~~l~~~  166 (170)
                      +.+..... .+.+.|+.+
T Consensus       143 ~~~~~~~~r~~~e~l~~l  160 (199)
T PTZ00253        143 TVNDMPVGRNVEEVLRLL  160 (199)
T ss_pred             EecCCCCCCCHHHHHHHH
Confidence            75533322 344444433

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.89  E-value=8.1e-23  Score=139.59  Aligned_cols=130  Identities=19%  Similarity=0.211  Sum_probs=94.1

Q ss_pred             ccccceeeCCCCCeecCCCCC-CcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881           11 SIFDLSVKDARGHEVDLSTYK-GKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~-gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      .+|+|++.+.+|+.++++++. ++++ |++||++||++|+.+++.|+++++++++.|+.+++|+.|        +.+...
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~   72 (149)
T cd02970           1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE   72 (149)
T ss_pred             CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence            479999999999999999874 4555 555569999999999999999999999889999999986        455666


Q ss_pred             HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhc----------------cCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSG----------------KWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~----------------~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +|.+ +++.+||++  .|.++..... ++.....                .....+......|++||||++|+|++.+.+
T Consensus        73 ~~~~-~~~~~~p~~--~D~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~  148 (149)
T cd02970          73 AFDK-GKFLPFPVY--ADPDRKLYRA-LGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD  148 (149)
T ss_pred             HHHH-hcCCCCeEE--ECCchhHHHH-cCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence            7776 779999999  5655443221 1110000                000000111234599999999999999865

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.89  E-value=5.3e-23  Score=139.12  Aligned_cols=106  Identities=14%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-------CcEEEEeecCCCCCCCCCChHHHHHHHHhhc
Q 030881           23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-------GLEILAFPCNQFGEEEPGSNDQIADFVCTRF   95 (170)
Q Consensus        23 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-------~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~   95 (170)
                      ..+++++++||+++|+|||+||++|+.++|.|++++++++++       ++.+|+||.|.       +.++..+|++ ++
T Consensus        16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~-------~~~~~~~f~~-~~   87 (146)
T cd03008          16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ-------SEQQQESFLK-DM   87 (146)
T ss_pred             ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC-------CHHHHHHHHH-HC
Confidence            356888999999999999999999999999999999887653       69999999873       6677889997 77


Q ss_pred             CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881           96 KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        96 ~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                      +++|+.+...+..+   ..+...          +++...|++||||++|+|+.+
T Consensus        88 ~~~~~~~p~~~~~~---~~l~~~----------y~v~~iPt~vlId~~G~Vv~~  128 (146)
T cd03008          88 PKKWLFLPFEDEFR---RELEAQ----------FSVEELPTVVVLKPDGDVLAA  128 (146)
T ss_pred             CCCceeecccchHH---HHHHHH----------cCCCCCCEEEEECCCCcEEee
Confidence            87765431122110   011111          223334499999999999987

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.89  E-value=2.6e-22  Score=133.04  Aligned_cols=121  Identities=21%  Similarity=0.260  Sum_probs=99.7

Q ss_pred             ccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        13 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      |+|++.+.+|+.+++.+++||+++|+||++||++|+..++.+++++++     +.+++|+++.      ++.+.+.++.+
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~~   69 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFMQ   69 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999877     5678888763      46889999997


Q ss_pred             hhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           93 TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        93 ~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                       +++++||++  .|.++....   .           +++.+.|++++||++| |++.+.|..+.+++.++
T Consensus        70 -~~~~~~~~~--~d~~~~~~~---~-----------~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~  121 (123)
T cd03011          70 -KKGYGFPVI--NDPDGVISA---R-----------WGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR  121 (123)
T ss_pred             -HcCCCccEE--ECCCcHHHH---h-----------CCCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence             778999988  454322111   1           3445556999999999 99999998888887765

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.88  E-value=2.5e-22  Score=140.30  Aligned_cols=132  Identities=16%  Similarity=0.170  Sum_probs=97.8

Q ss_pred             ccCCcccccceeeCC-----CC-----CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEE------E
Q 030881            6 IQNPESIFDLSVKDA-----RG-----HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI------L   69 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~-----~g-----~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~------v   69 (170)
                      +..|.++|..++.+.     +|     +.++.++++||+.||.|||+||++|+.+.|.|.++    +++|+.+      +
T Consensus        23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~t~   98 (184)
T TIGR01626        23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQTTT   98 (184)
T ss_pred             hhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccceE
Confidence            567899999988765     44     35677778999999999999999999999999999    4456888      9


Q ss_pred             EeecCCCCCCCCCChHHHHHHHHhhcCCCCC---ceEEeecCCCCchhHHHHhHhccCCccCCccccCcee-EEECCCCc
Q 030881           70 AFPCNQFGEEEPGSNDQIADFVCTRFKSEFP---IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAK-FLVDKNGQ  145 (170)
Q Consensus        70 ~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~-~lid~~G~  145 (170)
                      +|+.|+   .......-++.|++ +.+..||   ++  .|.++....   .           +++...|++ ||||++|+
T Consensus        99 ~IN~dd---~~~~~~~fVk~fie-~~~~~~P~~~vl--lD~~g~v~~---~-----------~gv~~~P~T~fVIDk~Gk  158 (184)
T TIGR01626        99 IINADD---AIVGTGMFVKSSAK-KGKKENPWSQVV--LDDKGAVKN---A-----------WQLNSEDSAIIVLDKTGK  158 (184)
T ss_pred             EEECcc---chhhHHHHHHHHHH-HhcccCCcceEE--ECCcchHHH---h-----------cCCCCCCceEEEECCCCc
Confidence            999873   01112334555665 6688888   66  555443321   2           234444477 89999999


Q ss_pred             EEEEeCCCCCchHHHH
Q 030881          146 VVDRYYPTTSLLSLEH  161 (170)
Q Consensus       146 i~~~~~~~~~~~~l~~  161 (170)
                      |++++.|..+.+++++
T Consensus       159 Vv~~~~G~l~~ee~e~  174 (184)
T TIGR01626       159 VKFVKEGALSDSDIQT  174 (184)
T ss_pred             EEEEEeCCCCHHHHHH
Confidence            9999999988887766

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.87  E-value=1.7e-21  Score=126.66  Aligned_cols=116  Identities=30%  Similarity=0.510  Sum_probs=95.4

Q ss_pred             cceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHh
Q 030881           14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT   93 (170)
Q Consensus        14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~   93 (170)
                      +|++.+.+|+.+++++++||+++|+||++||++|...++.|.++.+++.+.++.+++|++|.      .+.+.++++.+ 
T Consensus         1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~~-   73 (116)
T cd02966           1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFLK-   73 (116)
T ss_pred             CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHHH-
Confidence            47889999999999999999999999999999999999999999999987789999999973      14899999997 


Q ss_pred             hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        94 ~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +++.+|+++  .+.......   .           +++.+.|+++|+|++|+|++.+.|
T Consensus        74 ~~~~~~~~~--~~~~~~~~~---~-----------~~~~~~P~~~l~d~~g~v~~~~~g  116 (116)
T cd02966          74 KYGITFPVL--LDPDGELAK---A-----------YGVRGLPTTFLIDRDGRIRARHVG  116 (116)
T ss_pred             HcCCCcceE--EcCcchHHH---h-----------cCcCccceEEEECCCCcEEEEecC
Confidence            778888888  444222111   1           233345599999999999998764

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.86  E-value=2.1e-21  Score=134.93  Aligned_cols=121  Identities=15%  Similarity=0.208  Sum_probs=90.9

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      .....|+|++.  +|+.+++++++    ||+||++|||+|++++|.|+++++++   ++.+++|++|.       ..   
T Consensus        51 ~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~---  111 (181)
T PRK13728         51 EKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG---  111 (181)
T ss_pred             CCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC---
Confidence            44466788874  99999999998    77899999999999999999999997   59999999873       11   


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEE-EeCCCCCchHHHHHHHHH
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD-RYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~-~~~~~~~~~~l~~~l~~~  166 (170)
                              ..+||++  .+..+.....  .|.         ......|++||||++|++++ .+.|..+.+++++.|+++
T Consensus       112 --------~~~fPv~--~dd~~~~~~~--~~g---------~~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l  170 (181)
T PRK13728        112 --------DTAFPEA--LPAPPDVMQT--FFP---------NIPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV  170 (181)
T ss_pred             --------CCCCceE--ecCchhHHHH--HhC---------CCCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence                    2588988  4311111111  110         10123449999999999975 689999999999999988


Q ss_pred             hc
Q 030881          167 LG  168 (170)
Q Consensus       167 l~  168 (170)
                      ++
T Consensus       171 l~  172 (181)
T PRK13728        171 LQ  172 (181)
T ss_pred             Hh
Confidence            75

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.86  E-value=2.7e-21  Score=129.78  Aligned_cols=110  Identities=20%  Similarity=0.251  Sum_probs=80.8

Q ss_pred             CCC-CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           20 ARG-HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        20 ~~g-~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      ++| +++++++++||++||+||++||++|+.++|.++++++++++.  ++.+++|++|.       +.+++.+|++ +++
T Consensus         4 ~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~-------~~~~~~~~~~-~~~   75 (132)
T cd02964           4 LDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDR-------SEESFNEYFS-EMP   75 (132)
T ss_pred             ccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCC-------CHHHHHHHHh-cCC
Confidence            344 489999999999999999999999999999999999999875  79999999873       6678889987 665


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                       .+..+...+.  .....+..     .     +++...|+++|||++|+|+++.
T Consensus        76 -~~~~~~~~d~--~~~~~~~~-----~-----~~v~~iPt~~lid~~G~iv~~~  116 (132)
T cd02964          76 -PWLAVPFEDE--ELRELLEK-----Q-----FKVEGIPTLVVLKPDGDVVTTN  116 (132)
T ss_pred             -CeEeeccCcH--HHHHHHHH-----H-----cCCCCCCEEEEECCCCCEEchh
Confidence             4433311110  00011111     0     2344445999999999999874

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.85  E-value=2.7e-21  Score=129.61  Aligned_cols=111  Identities=21%  Similarity=0.312  Sum_probs=80.8

Q ss_pred             eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881           17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTR   94 (170)
Q Consensus        17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~   94 (170)
                      |.+.+|+.+++++++||++||+||++||++|+.++|.+++++++++++  ++.+++|+.|.       +.++..++++ +
T Consensus         3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~-------~~~~~~~~~~-~   74 (131)
T cd03009           3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDR-------DEESFNDYFS-K   74 (131)
T ss_pred             ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCC-------CHHHHHHHHH-c
Confidence            468899999999999999999999999999999999999999999865  69999999873       5567777775 3


Q ss_pred             cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881           95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                      +.  +..+. +... .....+.     ..     +++...|+++|||++|+|+.+
T Consensus        75 ~~--~~~~~-~~~~-~~~~~~~-----~~-----~~v~~~P~~~lid~~G~i~~~  115 (131)
T cd03009          75 MP--WLAVP-FSDR-ERRSRLN-----RT-----FKIEGIPTLIILDADGEVVTT  115 (131)
T ss_pred             CC--eeEcc-cCCH-HHHHHHH-----HH-----cCCCCCCEEEEECCCCCEEcc
Confidence            22  21110 1100 0000010     01     234445599999999999987

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=8.7e-20  Score=126.29  Aligned_cols=142  Identities=20%  Similarity=0.311  Sum_probs=106.8

Q ss_pred             ccCCcccccceeeCC-CCC---eecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            6 IQNPESIFDLSVKDA-RGH---EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~-~g~---~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      +..|+++|+|++... .|.   +++++++.|||+|++|| +.+.+.|..++..+++.+++|+++|++++++|+|      
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------   76 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------   76 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence            568999999999987 664   89999998899999999 6899999999999999999999999999999998      


Q ss_pred             CCChHHHHHHHHh---hcC---CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           81 PGSNDQIADFVCT---RFK---SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~---~~~---~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                        +.....+|...   ..+   ++||++  .|.++..+.. |+.+..    ..|..+.   .+|||||+|+|++...-..
T Consensus        77 --s~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~vs~~-ygvl~~----~~g~a~R---~~FIIDp~g~ir~~~v~~~  144 (194)
T COG0450          77 --SVFSHKAWKATIREAGGIGKIKFPMI--ADPKGEIARA-YGVLHP----EEGLALR---GTFIIDPDGVIRHILVNPL  144 (194)
T ss_pred             --cHHHHHHHHhcHHhcCCccceecceE--EcCchhHHHH-cCCccc----CCCccee---EEEEECCCCeEEEEEEecC
Confidence              44555555442   455   689999  6777665542 222211    1113455   8899999999999943333


Q ss_pred             ----CchHHHHHHHH
Q 030881          155 ----SLLSLEHDIKK  165 (170)
Q Consensus       155 ----~~~~l~~~l~~  165 (170)
                          +.+++.+.|++
T Consensus       145 ~iGRn~dEilR~idA  159 (194)
T COG0450         145 TIGRNVDEILRVIDA  159 (194)
T ss_pred             CCCcCHHHHHHHHHH
Confidence                34444444443

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.82  E-value=4.6e-20  Score=126.92  Aligned_cols=132  Identities=18%  Similarity=0.234  Sum_probs=97.9

Q ss_pred             CCcccccceeeCCC---CCeecCCC-CCCcEEEEEEe-cCCCCCChhh-HHHHHHHHHHhccCCc-EEEEeecCCCCCCC
Q 030881            8 NPESIFDLSVKDAR---GHEVDLST-YKGKVLLIVNV-ASKCGMTNSN-YIELSQLYDKYKDQGL-EILAFPCNQFGEEE   80 (170)
Q Consensus         8 ~g~~~p~f~l~~~~---g~~~~l~~-~~gk~~lv~f~-~~~C~~C~~~-~~~l~~~~~~~~~~~v-~~v~is~d~~~~~~   80 (170)
                      .|+++|+|++.+.+   |+.++|++ ++||++||+|+ +.|||.|..+ ++.+++.+++|++.|+ .+++||.|      
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------   74 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------   74 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence            58999999999985   99999999 58887777777 7999999999 9999999999999999 69999986      


Q ss_pred             CCChHHHHHHHHhhcCC--CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           81 PGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                        +....++|++ +.+.  +||++  .|....... .|+.......  .|........+|||| +|+|++.+....
T Consensus        75 --~~~~~~~~~~-~~~~~~~f~lL--sD~~~~~~~-~ygv~~~~~~--~~~~~~~~R~~fiId-~g~I~~~~~~~~  141 (155)
T cd03013          75 --DPFVMKAWGK-ALGAKDKIRFL--ADGNGEFTK-ALGLTLDLSA--AGGGIRSKRYALIVD-DGKVKYLFVEED  141 (155)
T ss_pred             --CHHHHHHHHH-hhCCCCcEEEE--ECCCHHHHH-HcCCCccccc--cCCcceeeeEEEEEC-CCEEEEEEEecC
Confidence              7788888987 6676  89999  555433222 2222111110  011111133889999 699999865543

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.82  E-value=3.4e-20  Score=129.84  Aligned_cols=137  Identities=19%  Similarity=0.287  Sum_probs=101.7

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCCh
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~   84 (170)
                      .....|+|+|.|.+|+.+++++++||++||+|..+.|| .|...+..|+++++.+.+.  .+++++||+|+    +.|++
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP----~~DTp  103 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP----ERDTP  103 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST----TTC-H
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC----CCCCH
Confidence            55678899999999999999999999999999999998 7999999999999988764  69999999995    56899


Q ss_pred             HHHHHHHHhhcCCCCCceEEeecCCCCchhHHH-HhH--hccC---CccCCccccCceeEEECCCCcEEEEeCC
Q 030881           85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYK-LLK--SGKW---GIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~-~~~--~~~~---~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +.+++|++ .++.++..+......   .+.+.. +..  ...+   +...+.+.|...+|||||+|+|+..|.+
T Consensus       104 ~~L~~Y~~-~~~~~~~~ltg~~~~---i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~  173 (174)
T PF02630_consen  104 EVLKKYAK-KFGPDFIGLTGSREE---IEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL  173 (174)
T ss_dssp             HHHHHHHH-CHTTTCEEEEEEHHH---HHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred             HHHHHHHH-hcCCCcceeEeCHHH---HHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence            99999998 788887766421111   111111 111  0000   1112567788899999999999998754

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.81  E-value=4.5e-19  Score=127.07  Aligned_cols=149  Identities=17%  Similarity=0.228  Sum_probs=113.8

Q ss_pred             cceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhc---cCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881           14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYK---DQGLEILAFPCNQFGEEEPGSNDQIAD   89 (170)
Q Consensus        14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~---~~~v~~v~is~d~~~~~~~~~~~~~~~   89 (170)
                      +|+|.|.+|+.+++.+++||++||+|..|+|| .|...+..|.++++++.   ...++++.|++|+    +.|+++.+++
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDP----erDtp~~lk~  124 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDP----ERDTPEVLKK  124 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECC----CCCCHHHHHH
Confidence            79999999999999999999999999999999 89999999999999988   3359999999996    6789999999


Q ss_pred             HHHhhcCCCCCceEEeecCCCCchhHH-HHhHh--ccCCc--cCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           90 FVCTRFKSEFPIFEKIDVNGEHASPLY-KLLKS--GKWGI--FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~-~~~~~--~~~~~--~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      |..-.+...|..+.  .. ....+.+. .|..-  ..+..  ..+.+-|+..+|+||++|+++..+.+...++++.+.|+
T Consensus       125 Y~~~~~~~~~~~lt--g~-~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~  201 (207)
T COG1999         125 YAELNFDPRWIGLT--GT-PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLK  201 (207)
T ss_pred             HhcccCCCCeeeee--CC-HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHH
Confidence            98512333343342  11 11111111 11111  11111  12678889999999999999999888788899999999


Q ss_pred             HHhcC
Q 030881          165 KLLGL  169 (170)
Q Consensus       165 ~~l~~  169 (170)
                      .++++
T Consensus       202 ~l~~~  206 (207)
T COG1999         202 KLLKE  206 (207)
T ss_pred             HHhhc
Confidence            99864

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.80  E-value=1.3e-19  Score=114.83  Aligned_cols=94  Identities=21%  Similarity=0.277  Sum_probs=68.6

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ||+++|+||++||++|..++|.|.+++++++ +.++++|+|+.|.       +.++++++.+ +++.+++.+  ......
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~-------~~~~~~~~~~-~~~~~~~~~--~~~~~~   70 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE-------DEEEWKKFLK-KNNFPWYNV--PFDDDN   70 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS-------SHHHHHHHHH-TCTTSSEEE--ETTTHH
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC-------CHHHHHHHHH-hcCCCceEE--eeCcch
Confidence            7999999999999999999999999999999 5579999999983       7889999997 555565544  221111


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcE
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV  146 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i  146 (170)
                      .......           .++...|+++|+|++|+|
T Consensus        71 ~~~l~~~-----------~~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   71 NSELLKK-----------YGINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             HHHHHHH-----------TT-TSSSEEEEEETTSBE
T ss_pred             HHHHHHH-----------CCCCcCCEEEEECCCCCC
Confidence            1111111           344445599999999987

...

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.77  E-value=1.6e-18  Score=117.54  Aligned_cols=109  Identities=15%  Similarity=0.191  Sum_probs=83.7

Q ss_pred             eeeCCCCCeecCCCC--CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHh
Q 030881           16 SVKDARGHEVDLSTY--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT   93 (170)
Q Consensus        16 ~l~~~~g~~~~l~~~--~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~   93 (170)
                      ++.+++++...+++.  +||++||+||++||++|+.+.|.+.++.+++.+. +.|+.|++|.       .  ...+.+. 
T Consensus         2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~~-   70 (142)
T cd02950           2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEID-   70 (142)
T ss_pred             ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHHH-
Confidence            345566666666654  7899999999999999999999999999999764 8899998762       1  1112222 


Q ss_pred             hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        94 ~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      ++                                  +|...|++++++++|+++..+.|....+++.+.|++++++
T Consensus        71 ~~----------------------------------~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~  112 (142)
T cd02950          71 RY----------------------------------RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG  112 (142)
T ss_pred             Hc----------------------------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence            21                                  2333349999999999999999988888899999998864

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.76  E-value=4.6e-18  Score=116.23  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=72.9

Q ss_pred             CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCc
Q 030881           22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI  101 (170)
Q Consensus        22 g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  101 (170)
                      |+.+++++    +.||+||++||++|++++|.|+++++++   ++.+++|++|.       ..  .         ..||.
T Consensus        44 G~~~~l~~----~~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~---------~~fp~   98 (153)
T TIGR02738        44 GRHANQDD----YALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L---------TGFPD   98 (153)
T ss_pred             chhhhcCC----CEEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c---------ccccc
Confidence            55555544    5599999999999999999999999987   48899999873       11  0         13444


Q ss_pred             eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE-EEeCCCCCchHHHHHHHHHh
Q 030881          102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV-DRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~-~~~~~~~~~~~l~~~l~~~l  167 (170)
                      .  .+.........+.     .+     ++...|++|+||++|+++ ..+.|..+.+++++.|+++|
T Consensus        99 ~--~~~~~~~~~~~~~-----~~-----~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll  153 (153)
T TIGR02738        99 P--LPATPEVMQTFFP-----NP-----RPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL  153 (153)
T ss_pred             c--cCCchHHHHHHhc-----cC-----CCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence            3  2211111110010     00     233344999999998864 46888888888999888765

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=99.75  E-value=3e-17  Score=105.19  Aligned_cols=107  Identities=66%  Similarity=1.147  Sum_probs=97.8

Q ss_pred             ccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        13 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      -+|++.|.+|+.++|++++||++||.=.|+.|+.-. +...|++++++|+++|+.|+++.+++|+.+++.+.+++++++.
T Consensus         2 Ydf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~~   80 (108)
T PF00255_consen    2 YDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFCK   80 (108)
T ss_dssp             GGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHHC
T ss_pred             cceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHHH
Confidence            378999999999999999999999999999999888 9999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCceEEeecCCCCchhHHHHhH
Q 030881           93 TRFKSEFPIFEKIDVNGEHASPLYKLLK  120 (170)
Q Consensus        93 ~~~~~~~p~~~~~d~~~~~~~~~~~~~~  120 (170)
                      .+++.+||++...+.+|..+..+|.|++
T Consensus        81 ~~~~~~F~vf~ki~VnG~~ahPly~~LK  108 (108)
T PF00255_consen   81 EKFGVTFPVFEKIDVNGPDAHPLYKYLK  108 (108)
T ss_dssp             HCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred             hccCCcccceEEEEecCCCCcHHHHHhC
Confidence            7799999999889999999888887753

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=99.73  E-value=1.8e-17  Score=118.75  Aligned_cols=144  Identities=21%  Similarity=0.275  Sum_probs=109.7

Q ss_pred             cceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccC-C--cEEEEeecCCCCCCCCCChHHHHH
Q 030881           14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ-G--LEILAFPCNQFGEEEPGSNDQIAD   89 (170)
Q Consensus        14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~-~--v~~v~is~d~~~~~~~~~~~~~~~   89 (170)
                      +|+|.|.+|+.++-.++.|||+|+||..|+|| .|..++..|.+..++..++ |  +..|.|++|+    +.|+.+.+++
T Consensus       121 pF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP----eRD~~~~~~e  196 (280)
T KOG2792|consen  121 PFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDP----ERDSVEVVAE  196 (280)
T ss_pred             ceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCc----ccCCHHHHHH
Confidence            79999999999999999999999999999999 8999999999999988766 3  4578899985    6789999999


Q ss_pred             HHHhhcCCCCCceEEeecCCCCchhHHHHhH------hccCCc--cCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLK------SGKWGI--FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~------~~~~~~--~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                      |++ +|....-     ..+|.. +++.+..+      +.-|..  .-+-|.|.=-+|||||+|+.+..+....+++++.+
T Consensus       197 Y~~-eF~pkll-----GLTGT~-eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~  269 (280)
T KOG2792|consen  197 YVS-EFHPKLL-----GLTGTT-EQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELAD  269 (280)
T ss_pred             HHH-hcChhhh-----cccCCH-HHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHH
Confidence            998 7776543     333332 11111111      121211  11456666678999999999998877778888888


Q ss_pred             HHHHHhc
Q 030881          162 DIKKLLG  168 (170)
Q Consensus       162 ~l~~~l~  168 (170)
                      .|.+-++
T Consensus       270 ~I~~~v~  276 (280)
T KOG2792|consen  270 SILKHVA  276 (280)
T ss_pred             HHHHHHH
Confidence            8876553

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.68  E-value=6.8e-16  Score=99.21  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=65.0

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+|+++||+||++||++|+.+.|.|+++.+++  .++.++.|+.|.       + ....++++ +++             
T Consensus        13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~~-~~~-------------   68 (103)
T cd02985          13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELCR-REK-------------   68 (103)
T ss_pred             cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHHH-HcC-------------
Confidence            46899999999999999999999999999999  349999998862       2 23334443 322             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                                           |...||++++ ++|+++.++.| ..++++.+.+.
T Consensus        69 ---------------------V~~~Pt~~~~-~~G~~v~~~~G-~~~~~l~~~~~  100 (103)
T cd02985          69 ---------------------IIEVPHFLFY-KDGEKIHEEEG-IGPDELIGDVL  100 (103)
T ss_pred             ---------------------CCcCCEEEEE-eCCeEEEEEeC-CCHHHHHHHHH
Confidence                                 2222385555 89999999988 45666666654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=3.8e-15  Score=100.30  Aligned_cols=143  Identities=17%  Similarity=0.257  Sum_probs=105.9

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCC-cEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .+..|+.+|+|+|.|.||++++|.++.| +++|++|| +...|.|.++...+++-++++++.+..++++|.|        
T Consensus        62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D--------  133 (211)
T KOG0855|consen   62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD--------  133 (211)
T ss_pred             eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence            4678999999999999999999999976 58888888 5778999999999999999999999999999987        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchH-HHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS-LEH  161 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~-l~~  161 (170)
                      +....+.|.. ++++.|.++  .|+.+....   .......|  + ++.+.- +.||++++|...........|+. +.+
T Consensus       134 ~s~sqKaF~s-KqnlPYhLL--SDpk~e~ik---~lGa~k~p--~-gg~~~R-sh~if~kg~~k~~ik~~~isPevsvd~  203 (211)
T KOG0855|consen  134 DSASQKAFAS-KQNLPYHLL--SDPKNEVIK---DLGAPKDP--F-GGLPGR-SHYIFDKGGVKQLIKNNQISPEVSVDE  203 (211)
T ss_pred             chHHHHHhhh-hccCCeeee--cCcchhHHH---HhCCCCCC--C-CCcccc-eEEEEecCCeEEEEEecccCccccHHH
Confidence            5677778886 778899988  565554322   11111112  1 122211 77999988776666555666664 444


Q ss_pred             HHHH
Q 030881          162 DIKK  165 (170)
Q Consensus       162 ~l~~  165 (170)
                      .++.
T Consensus       204 a~k~  207 (211)
T KOG0855|consen  204 ALKF  207 (211)
T ss_pred             HHHH
Confidence            4433

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.59  E-value=1.6e-14  Score=94.06  Aligned_cols=91  Identities=14%  Similarity=0.028  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      ...|+++||+||++||++|+...|.+.++.+++++.++.++.|+++.        ..   ..+. +++            
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~--------~~---~l~~-~~~------------   76 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH--------ER---RLAR-KLG------------   76 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc--------cH---HHHH-HcC------------
Confidence            34689999999999999999999999999999987679999998752        11   1222 322            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                            |...|+++++ ++|+++....|..+.+.+.+.|+++
T Consensus        77 ----------------------V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~  111 (111)
T cd02963          77 ----------------------AHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL  111 (111)
T ss_pred             ----------------------CccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence                                  2223388888 5899999888988888888887754

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.58  E-value=1.2e-14  Score=97.87  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=87.0

Q ss_pred             ceeeCCCCCeecCC-CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           15 LSVKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        15 f~l~~~~g~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      ..|...+|..+... .++||.+.++|.|.||++|+...|.+.+++++.++.  .+.+|.||.|.       +.+++..|.
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~-------~~~~~~~y~   87 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR-------DEESLDEYM   87 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC-------CHHHHHHHH
Confidence            66788899888777 479999999999999999999999999999999866  49999999984       888999999


Q ss_pred             HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE
Q 030881           92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR  149 (170)
Q Consensus        92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~  149 (170)
                      . .++..|..+-..|..  ..+....           +.+...|+..+++++|+++..
T Consensus        88 ~-~~~~~W~~iPf~d~~--~~~l~~k-----------y~v~~iP~l~i~~~dG~~v~~  131 (157)
T KOG2501|consen   88 L-EHHGDWLAIPFGDDL--IQKLSEK-----------YEVKGIPALVILKPDGTVVTE  131 (157)
T ss_pred             H-hcCCCeEEecCCCHH--HHHHHHh-----------cccCcCceeEEecCCCCEehH
Confidence            7 666666555211111  1111112           334444499999999988876

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.1e-14  Score=97.55  Aligned_cols=142  Identities=15%  Similarity=0.227  Sum_probs=100.9

Q ss_pred             CccccccCCcccccceeeCCCCCeecCCCCCCc-EEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881            1 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGK-VLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE   78 (170)
Q Consensus         1 ~~~~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk-~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~   78 (170)
                      |....+..|+.+|+|+..+..|+ +.+.++-|. |.|+ .--+.+.|.|..++..+..+..+|.++|++.+++|+|.+++
T Consensus         1 m~~~~l~lgd~~PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves   79 (224)
T KOG0854|consen    1 MDGPRLRLGDTVPNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES   79 (224)
T ss_pred             CCCCcccccCcCCCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence            45566789999999999888886 889998664 4333 33478999999999999999999999999999999997654


Q ss_pred             CCCCChHHHHHHHHhhcC--CCCCceEEeecCCCCchhHHHHhHhc-cCCccCCccccCceeEEECCCCcEEEEe
Q 030881           79 EEPGSNDQIADFVCTRFK--SEFPIFEKIDVNGEHASPLYKLLKSG-KWGIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~--~~~p~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                      +. +.-.+++.|.+ ...  ++||++  .|.....+-.+....... -+...|..+.   .+|+|+++.+|+..+
T Consensus        80 H~-~Wi~DIks~~~-~~~~~~~yPII--aD~~rela~~l~MlD~~e~~~~~~~~T~R---avfvi~pdkKirLs~  147 (224)
T KOG0854|consen   80 HK-DWIKDIKSYAK-VKNHSVPYPII--ADPNRELAFLLNMLDPEEKKNIGDGKTVR---AVFVIDPDKKIRLSF  147 (224)
T ss_pred             HH-HHHHHHHHHHh-ccCCCCCCCee--cCCchhhhhhhcccCHhHcCCCCCCceEE---EEEEECCCceEEEEE
Confidence            43 44556666665 334  789999  676665543221111100 0111113455   889999999999883

>TIGR02740 TraF-like TraF-like protein

Probab=99.56  E-value=1.1e-14  Score=108.42  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=78.8

Q ss_pred             CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881           23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF  102 (170)
Q Consensus        23 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~  102 (170)
                      +...+++++|+++||+||++||++|+.+.|.|+++.+++   |+.+++|++|.       ...           ..||.+
T Consensus       157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~-------~~~-----------~~fp~~  215 (271)
T TIGR02740       157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDG-------GPL-----------PGFPNA  215 (271)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCC-------Ccc-----------ccCCcc
Confidence            446788899999999999999999999999999999997   48999999873       110           124543


Q ss_pred             EEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          103 EKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                        .+ +...+   ..           .+|...|++||++++ |++.....|..+.+++.+.|..+..
T Consensus       216 --~~-d~~la---~~-----------~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~  265 (271)
T TIGR02740       216 --RP-DAGQA---QQ-----------LKIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH  265 (271)
T ss_pred             --cC-CHHHH---HH-----------cCCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence              11 11111   11           245555699999995 5666667788889999988887654

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=4e-14  Score=94.58  Aligned_cols=90  Identities=21%  Similarity=0.278  Sum_probs=71.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++|||.|||+||+||+...|.|+++..++.++ +++..|++|.        .-   +.+. +|               
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~--------~~---ela~-~Y---------------  111 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE--------HP---ELAE-DY---------------  111 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc--------cc---chHh-hc---------------
Confidence            5689999999999999999999999999999766 9999998872        11   1111 21               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         +|...|+++++ +||+.+.+..|..+.+.+.+.|++.|+
T Consensus       112 -------------------~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~  149 (150)
T KOG0910|consen  112 -------------------EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK  149 (150)
T ss_pred             -------------------ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence                               22233375555 689999999999999999999999886

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.55  E-value=3.4e-14  Score=91.39  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=67.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .|+++||+||++||++|....+.+   .++.+.+++ ++.++.|+.+.       +......+++ +++           
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~~~~~~~~~-~~~-----------   69 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTK-------NDPEITALLK-RFG-----------   69 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCC-------CCHHHHHHHH-HcC-----------
Confidence            579999999999999999999887   577777765 69999998752       2222334443 322           


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECC-CCcEEEEeCCCCCchHHHHHH
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i~~~~~~~~~~~~l~~~l  163 (170)
                                             +...|+++++++ +|+++.++.|..+.+++.+.|
T Consensus        70 -----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l  103 (104)
T cd02953          70 -----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL  103 (104)
T ss_pred             -----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence                                   222339999999 999999999988888877765

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.55  E-value=3.7e-14  Score=94.17  Aligned_cols=104  Identities=12%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             CC-cEEEEEEecCCCCCChhhHHHHH---HHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           31 KG-KVLLIVNVASKCGMTNSNYIELS---QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        31 ~g-k~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      .| |+++|+||++||++|+...+.+.   ++.+.+++ ++.++.|+++.       +. ...+|-  .       .    
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~-~~~~~~--~-------~----   69 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DK-EVTDFD--G-------E----   69 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cc-eeeccC--C-------C----
Confidence            57 99999999999999999998885   56666653 58899998763       11 111110  0       0    


Q ss_pred             cCCCCchhH-HHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          107 VNGEHASPL-YKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       107 ~~~~~~~~~-~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                        ......+ ..           +++...|++++++++ |+++.+..|..+.+.+.+.|+.++++
T Consensus        70 --~~~~~~l~~~-----------~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~  121 (125)
T cd02951          70 --ALSEKELARK-----------YRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK  121 (125)
T ss_pred             --CccHHHHHHH-----------cCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence              0000111 11           234444599999999 89999999988889999999988764

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.54  E-value=3.8e-14  Score=90.56  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      ++++||++||.||++||++|+.+.|.+.++.+++++  +.++.|+.
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~--~~~~~vd~   57 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ--IRHLAIEE   57 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc--CceEEEEC
Confidence            357899999999999999999999999999999964  88888854

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.54  E-value=6.5e-14  Score=89.80  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|++++|+||++||++|+...|.+.++++++++..+.++.++.|        ..    +.++ +++              
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~----~~~~-~~~--------------   68 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TI----DTLK-RYR--------------   68 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CH----HHHH-HcC--------------
Confidence            58999999999999999999999999999998666888888764        11    1222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                          +...|+++++ ++|+++.+..|. +++.+.+.|+++
T Consensus        69 --------------------v~~~Pt~~~~-~~g~~~~~~~G~-~~~~~~~~i~~~  102 (102)
T cd02948          69 --------------------GKCEPTFLFY-KNGELVAVIRGA-NAPLLNKTITEL  102 (102)
T ss_pred             --------------------CCcCcEEEEE-ECCEEEEEEecC-ChHHHHHHHhhC
Confidence                                2223364444 799999998884 777788877653

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PRK09381 trxA thioredoxin; Provisional

Probab=99.53  E-value=1.1e-13  Score=89.70  Aligned_cols=90  Identities=20%  Similarity=0.198  Sum_probs=70.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.++++.+++.+. +.++.++++.       . ..   ..+ ++               
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~-~~---~~~-~~---------------   71 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------N-PG---TAP-KY---------------   71 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------C-hh---HHH-hC---------------
Confidence            4789999999999999999999999999999764 8999998762       1 11   111 21               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         ++...|+++++ ++|+++..+.|..+.+++.+.|++.|+
T Consensus        72 -------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~  109 (109)
T PRK09381         72 -------------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  109 (109)
T ss_pred             -------------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence                               12223387777 699999999998888889999988764

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.53  E-value=8.7e-14  Score=88.09  Aligned_cols=85  Identities=16%  Similarity=0.214  Sum_probs=65.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+++||+||++||++|+...|.++++.+.+.+. +.++.|+.+.        ..   ..++ +++              
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~--------~~---~l~~-~~~--------------   63 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA--------QP---QIAQ-QFG--------------   63 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC--------CH---HHHH-HcC--------------
Confidence            5789999999999999999999999999999764 8888998752        11   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                                          +...|++++++ +|+++..+.|..+.+++.+.|
T Consensus        64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l   95 (96)
T cd02956          64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML   95 (96)
T ss_pred             --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence                                22223888886 899999888888887777765

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK10996 thioredoxin 2; Provisional

Probab=99.47  E-value=2.4e-13  Score=91.92  Aligned_cols=89  Identities=17%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...+.|.++++++.+. +.++.++.+.        ..   +..+ +++              
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~--------~~---~l~~-~~~--------------  103 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK-VRFVKVNTEA--------ER---ELSA-RFR--------------  103 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEeCCC--------CH---HHHH-hcC--------------
Confidence            5799999999999999999999999999998754 8888887652        11   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          |...|+++++ ++|+++..+.|..+.+.+.+.|++++
T Consensus       104 --------------------V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~  139 (139)
T PRK10996        104 --------------------IRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL  139 (139)
T ss_pred             --------------------CCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence                                2222386666 58999999999888888999998764

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.46  E-value=4.9e-13  Score=89.80  Aligned_cols=92  Identities=10%  Similarity=-0.006  Sum_probs=69.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||.|||+||++|+...|.|.++.+++.+. +.|+-|++|.        ..   ++.. .+++.            
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe--------~~---dla~-~y~I~------------   76 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE--------VP---DFNT-MYELY------------   76 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC--------CH---HHHH-HcCcc------------
Confidence            5789999999999999999999999999999765 8889999873        22   3332 32221            


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCc-EEEEeCC--------CCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ-VVDRYYP--------TTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~-i~~~~~~--------~~~~~~l~~~l~~~l~~  169 (170)
                                         +.   |+++++-++|+ .+.+..|        ..+.+++.+.++.++++
T Consensus        77 -------------------~~---~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~  122 (142)
T PLN00410         77 -------------------DP---CTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG  122 (142)
T ss_pred             -------------------CC---CcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence                               11   26666667888 8888877        46777888888887754

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.46  E-value=3e-13  Score=86.47  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ..+++++|.||++||++|+...|.+.++.+++++. +.+..|+++.       .    ...++ ++++            
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~----~~~~~-~~~v------------   70 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D----RMLCR-SQGV------------   70 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c----HHHHH-HcCC------------
Confidence            35699999999999999999999999999999765 8999998862       1    12332 3222            


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                                            ...|+++++ ++|+.+..+.|..+.+++.+
T Consensus        71 ----------------------~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~   99 (101)
T cd03003          71 ----------------------NSYPSLYVF-PSGMNPEKYYGDRSKESLVK   99 (101)
T ss_pred             ----------------------CccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence                                  122376677 78988888888777776654

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PHA02278 thioredoxin-like protein

Probab=99.45  E-value=6.5e-13  Score=85.09  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=37.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++||+|||+||++|+...|.+.++.+++... +.++.|++|
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~-~~~~~vdvd   55 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK-KPILTLNLD   55 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-ceEEEEECC
Confidence            5799999999999999999999999998875433 678888886

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.45  E-value=6.3e-13  Score=84.92  Aligned_cols=85  Identities=20%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+ +||.||++||++|+...|.++++.+.++..++.+..++.+.       .. .   .++ +++              
T Consensus        16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~-~---~~~-~~~--------------   68 (101)
T cd02994          16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EP-G---LSG-RFF--------------   68 (101)
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CH-h---HHH-HcC--------------
Confidence            566 68999999999999999999999998876678999988752       11 1   222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                                          +...|+++++ ++|++ ..+.|..+.+++.+.|+
T Consensus        69 --------------------i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~  100 (101)
T cd02994          69 --------------------VTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE  100 (101)
T ss_pred             --------------------CcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence                                2222387776 78986 67888888877777765

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.3e-12  Score=86.86  Aligned_cols=128  Identities=16%  Similarity=0.174  Sum_probs=95.3

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..++.|+++|+|++.+.+.+.++++++.||..++..+ +-..+.|-.+...+++...++.+  +.++.||+|        
T Consensus        16 ~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D--------   85 (158)
T COG2077          16 NEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD--------   85 (158)
T ss_pred             CCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC--------
Confidence            4578999999999999999999999999987777766 56899999999999999999865  999999997        


Q ss_pred             ChHHHHHHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccC--CccCCccccCceeEEECCCCcEEEEe
Q 030881           83 SNDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKW--GIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                      .+-+.++|+.++ ++. -..+  .|.......+.|+..+...|  |..   =+   ++|++|.+|+|+|..
T Consensus        86 LPFAq~RfC~ae-Gi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~gLl---AR---aV~V~De~g~V~y~e  147 (158)
T COG2077          86 LPFAQKRFCGAE-GIENVITL--SDFRDRAFGENYGVLINEGPLAGLL---AR---AVFVLDENGKVTYSE  147 (158)
T ss_pred             ChhHHhhhhhhc-CcccceEh--hhhhhhhhhHhhCEEeccccccCee---ee---EEEEEcCCCcEEEEE
Confidence            678999999844 654 3333  33322222222333222222  211   11   789999999999983

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.44  E-value=1.4e-12  Score=83.79  Aligned_cols=86  Identities=21%  Similarity=0.298  Sum_probs=65.2

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ..+|.+|++|+|+||++|+...|.+.++..+|.+  +.|+.|++|        .   +...+. .+              
T Consensus        19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~~-~~--------------   70 (106)
T KOG0907|consen   19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVAK-EF--------------   70 (106)
T ss_pred             CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHHH-hc--------------
Confidence            3469999999999999999999999999999987  999999986        1   444443 32              


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                                          ++...||+.++ ++|+.+....|. +.+++++.|.+
T Consensus        71 --------------------~V~~~PTf~f~-k~g~~~~~~vGa-~~~~l~~~i~~  104 (106)
T KOG0907|consen   71 --------------------NVKAMPTFVFY-KGGEEVDEVVGA-NKAELEKKIAK  104 (106)
T ss_pred             --------------------CceEeeEEEEE-ECCEEEEEEecC-CHHHHHHHHHh
Confidence                                22223375555 899999998885 44466666654

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.42  E-value=1.1e-12  Score=85.05  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=40.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +|++++|.||++||++|+...|.+.++...+++.++.++.|++|
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d   63 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD   63 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence            57999999999999999999999999999998777999999876

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.42  E-value=8.4e-13  Score=85.51  Aligned_cols=43  Identities=12%  Similarity=-0.024  Sum_probs=39.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++||+|||+||++|+...|.|.++.+++.+. +.++.|++|
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD   55 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDID   55 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECC
Confidence            4689999999999999999999999999999765 789999887

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.41  E-value=2e-12  Score=83.01  Aligned_cols=85  Identities=15%  Similarity=0.096  Sum_probs=63.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|.||++||++|+...|.++++.+++.+. +.+..|+.+.        .   .+.++ +++              
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~--------~---~~~~~-~~~--------------   70 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK-VKVGSVDCQK--------Y---ESLCQ-QAN--------------   70 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCc--------h---HHHHH-HcC--------------
Confidence            4679999999999999999999999999998654 8899998752        1   22332 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC-chHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS-LLSLEHD  162 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~-~~~l~~~  162 (170)
                                          |...|+++++..+|+.+..+.|..+ .+++.+.
T Consensus        71 --------------------i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~  103 (104)
T cd03004          71 --------------------IRAYPTIRLYPGNASKYHSYNGWHRDADSILEF  103 (104)
T ss_pred             --------------------CCcccEEEEEcCCCCCceEccCCCCCHHHHHhh
Confidence                                2222388888776688899988776 7666654

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=2.2e-12  Score=87.68  Aligned_cols=134  Identities=18%  Similarity=0.185  Sum_probs=94.2

Q ss_pred             ccCCcccccceeeC---CCCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            6 IQNPESIFDLSVKD---ARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         6 ~~~g~~~p~f~l~~---~~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      +....++|+|+-.-   -.-+.++|++++||++++.|+. .+.-.|..+.-.+++.+.+|++.|.+++++|+|..     
T Consensus         4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~-----   78 (196)
T KOG0852|consen    4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSV-----   78 (196)
T ss_pred             cccCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccch-----
Confidence            45566778888543   3447899999999999999994 67779999999999999999999999999999831     


Q ss_pred             CChHHHHHHHHhhcCCC---CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           82 GSNDQIADFVCTRFKSE---FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~---~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                      -+--++...-+++.++.   +|++  .|.+...... |+.+..    ..|-.+.   ..||||++|.++.......
T Consensus        79 fshlAW~ntprk~gGlg~~~iPll--sD~~~~Isrd-yGvL~~----~~G~~lR---glfIId~~gi~R~it~NDl  144 (196)
T KOG0852|consen   79 FSHLAWINTPRKQGGLGPLNIPLL--SDLNHEISRD-YGVLKE----DEGIALR---GLFIIDPDGILRQITINDL  144 (196)
T ss_pred             hhhhhHhcCchhhCCcCcccccee--eccchhhHHh-cCceec----CCCccee---eeEEEccccceEEeeeccc
Confidence            12223333333455554   9999  6666554331 222222    2223444   7899999999999744433

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.39  E-value=2.5e-12  Score=82.64  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=61.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      ++++++|+||++||++|+...|.++++++++++.+  +.+..++.+.        ..   ..++ ++             
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~--------~~---~~~~-~~-------------   68 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA--------YS---SIAS-EF-------------   68 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc--------CH---hHHh-hc-------------
Confidence            46899999999999999999999999999997543  6677776541        11   1221 21             


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                           +|...|+++++. +| +...+.|..+.+++.+.+++.
T Consensus        69 ---------------------~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~  103 (104)
T cd03000          69 ---------------------GVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV  103 (104)
T ss_pred             ---------------------CCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence                                 222233888884 45 456678877888888877754

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.39  E-value=2.5e-12  Score=82.00  Aligned_cols=89  Identities=16%  Similarity=0.134  Sum_probs=67.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC-cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG-LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ++++++|.||++||+.|+...+.++++.+.+++.+ +.++.++.+.           .....+ ++              
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~~-~~--------------   65 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----------EKDLAS-RF--------------   65 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----------hHHHHH-hC--------------
Confidence            68999999999999999999999999999997653 8888877641           122222 22              


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                          ++...|+++++++++. +..+.|..+.+++...|++.
T Consensus        66 --------------------~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~  101 (102)
T TIGR01126        66 --------------------GVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK  101 (102)
T ss_pred             --------------------CCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence                                2223349899998877 67788888888888888764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.38  E-value=1.5e-12  Score=83.13  Aligned_cols=83  Identities=24%  Similarity=0.349  Sum_probs=60.8

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ++++|+||++||++|+...|.++++++++++  ..+.++.|+.+.        ..   ..++ +++              
T Consensus        17 ~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~--------~~---~~~~-~~~--------------   70 (102)
T cd03005          17 GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ--------HR---ELCS-EFQ--------------   70 (102)
T ss_pred             CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC--------Ch---hhHh-hcC--------------
Confidence            3599999999999999999999999999976  358888887652        11   2221 211              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                                          +...|+++++ ++|+.+..+.|..+.+++.+.
T Consensus        71 --------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~  101 (102)
T cd03005          71 --------------------VRGYPTLLLF-KDGEKVDKYKGTRDLDSLKEF  101 (102)
T ss_pred             --------------------CCcCCEEEEE-eCCCeeeEeeCCCCHHHHHhh
Confidence                                2223388888 688888889888877766554

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.37  E-value=3.2e-12  Score=83.22  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++||.|||+||++|+...|.+.++.+++++. +.++.|+++
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d   70 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW   70 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC
Confidence            5689999999999999999999999999999765 889999876

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>TIGR01068 thioredoxin thioredoxin

Probab=99.37  E-value=6.8e-12  Score=79.70  Aligned_cols=88  Identities=24%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      +++++|+||++||++|+...+.++++.+++.+. +.++.++.+.       + .   ...+ ++                
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~vd~~~-------~-~---~~~~-~~----------------   64 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK-VKFVKLNVDE-------N-P---DIAA-KY----------------   64 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC-eEEEEEECCC-------C-H---HHHH-Hc----------------
Confidence            579999999999999999999999999988644 9999998752       1 1   1222 22                


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                        ++...|+++++ ++|+++..+.|..+.+++.+.|++.+
T Consensus        65 ------------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~  101 (101)
T TIGR01068        65 ------------------GIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL  101 (101)
T ss_pred             ------------------CCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence                              22233487888 68999888888888888888887654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.37  E-value=3.6e-12  Score=82.43  Aligned_cols=88  Identities=14%  Similarity=0.166  Sum_probs=64.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|++++|.||++||++|+...|.+.++.+.+++. +.++.|+.+.         +...+.+. +++              
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~v~~~~---------~~~~~~~~-~~~--------------   71 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL-VQVAAVDCDE---------DKNKPLCG-KYG--------------   71 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-ceEEEEecCc---------cccHHHHH-HcC--------------
Confidence            4789999999999999999999999999998754 8899998762         11122332 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCC----cEEEEeCCCCCchHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG----QVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G----~i~~~~~~~~~~~~l~~~l  163 (170)
                                          +...|+++++++++    .+...+.|..+.+++.++|
T Consensus        72 --------------------i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi  108 (109)
T cd03002          72 --------------------VQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV  108 (109)
T ss_pred             --------------------CCcCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence                                22233889998876    3566788877777777665

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.36  E-value=6.6e-12  Score=79.67  Aligned_cols=85  Identities=9%  Similarity=0.175  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++++||++||+.|....+.++++.+++.+ ++.++.|+.+.        ..+   ... +++              
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~--------~~~---l~~-~~~--------------   64 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDE--------DQE---IAE-AAG--------------   64 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCC--------CHH---HHH-HCC--------------
Confidence            578999999999999999999999999999875 48888888752        122   221 221              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                                          +...|+++++. +|+++....|..+.+++.+.|
T Consensus        65 --------------------v~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l   96 (97)
T cd02949          65 --------------------IMGTPTVQFFK-DKELVKEISGVKMKSEYREFI   96 (97)
T ss_pred             --------------------CeeccEEEEEE-CCeEEEEEeCCccHHHHHHhh
Confidence                                22233888884 799999998877777776665

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.35  E-value=1.2e-12  Score=85.07  Aligned_cols=106  Identities=17%  Similarity=0.105  Sum_probs=64.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHH---HHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQL---YDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~---~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .||++|++||++||++|+...+.+...   ...+++ ++.++.++++.       +......+.. ..+...+..  .  
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~--~--   70 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNIDD-------SRDESEAVLD-FDGQKNVRL--S--   70 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESHS-------HHHHHHHHHS-HTCHSSCHH--H--
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecCC-------cccccccccc-cccchhhhH--H--
Confidence            589999999999999999988888754   344433 48888888762       2222333332 111111111  0  


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                          ..++...          .++...|+++++|++|+++++..|..+++++.+.|
T Consensus        71 ----~~~l~~~----------~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L  112 (112)
T PF13098_consen   71 ----NKELAQR----------YGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML  112 (112)
T ss_dssp             ----HHHHHHH----------TT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred             ----HHHHHHH----------cCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence                0011111          34666669999999999999999999998887764

...

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.33  E-value=2.9e-11  Score=79.90  Aligned_cols=98  Identities=15%  Similarity=0.079  Sum_probs=64.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|+.++|+|+++|||+|+...|.|.++.++.   ++.+..|++|.-...+..+..++.++.+ +++....          
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~---~~~~y~vdvd~~~~~~~~~~~~~~~~~~-~~~i~~~----------   87 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQT---KAPIYYIDSENNGSFEMSSLNDLTAFRS-RFGIPTS----------   87 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhc---CCcEEEEECCCccCcCcccHHHHHHHHH-HcCCccc----------
Confidence            4788999999999999999999999999982   3678888876311111122335666654 4433221          


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-CCchHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-TSLLSLEHDI  163 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-~~~~~l~~~l  163 (170)
                                          +...|+++++ ++|+.+.+..|. .+.++|++.+
T Consensus        88 --------------------i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~~~  120 (122)
T TIGR01295        88 --------------------FMGTPTFVHI-TDGKQVSVRCGSSTTAQELQDIA  120 (122)
T ss_pred             --------------------CCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHHHh
Confidence                                1222386655 689999998774 3455555544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.33  E-value=1.9e-12  Score=84.93  Aligned_cols=47  Identities=11%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+..+||++||+||++||++|+.+.+.+.+..+... .+..++.|++|
T Consensus        14 ~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd   60 (117)
T cd02959          14 EAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLE   60 (117)
T ss_pred             HHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEec
Confidence            344578999999999999999999999998766543 23556667665

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.31  E-value=1.1e-11  Score=91.34  Aligned_cols=90  Identities=22%  Similarity=0.337  Sum_probs=71.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +.+||||+||++||++|...+|.|.++..+++++ +.+..|++|.       .+. +..    .|++             
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D~-------~p~-vAa----qfgi-------------   95 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCDA-------EPM-VAA----QFGV-------------   95 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCCc-------chh-HHH----HhCc-------------
Confidence            5579999999999999999999999999999887 9999999873       222 221    3222             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                        ..||   ++|++ .+|+-+..+.|..+.+.++++|++++.
T Consensus        96 ------------------qsIP---tV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~  131 (304)
T COG3118          96 ------------------QSIP---TVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP  131 (304)
T ss_pred             ------------------CcCC---eEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence                              2233   87777 689999999998777789999998874

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.30  E-value=8.3e-12  Score=80.74  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=37.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-----CcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-----GLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-----~v~~v~is~d   74 (170)
                      .+++++|+||++||++|+...|.++++.+.+++.     .+.+..|++|
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d   65 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD   65 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence            4689999999999999999999999999887532     3788888876

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.29  E-value=2.6e-11  Score=77.27  Aligned_cols=87  Identities=22%  Similarity=0.294  Sum_probs=68.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+|+++||++|....|.++++.+++.+ ++.++.|+.+.       .    ...++ ++++             
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~-------~----~~l~~-~~~v-------------   69 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDE-------N----KELCK-KYGV-------------   69 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------S----HHHHH-HTTC-------------
T ss_pred             cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhc-------c----chhhh-ccCC-------------
Confidence            369999999999999999999999999999987 69999998752       1    33333 4332             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                                           ...|+++++ ++|+....+.|..+.+++.+.|++
T Consensus        70 ---------------------~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~  102 (103)
T PF00085_consen   70 ---------------------KSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK  102 (103)
T ss_dssp             ---------------------SSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred             ---------------------CCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence                                 222376666 578888899998899999999876

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.29  E-value=1.4e-11  Score=78.86  Aligned_cols=87  Identities=16%  Similarity=0.175  Sum_probs=60.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ++++++|.||++||++|+...+.++++.+.+++. .+.++.++.+.         ++.....+ +++             
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~---------~~~~~~~~-~~~-------------   72 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK---------PEHDALKE-EYN-------------   72 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC---------CccHHHHH-hCC-------------
Confidence            5779999999999999999999999999998743 37777777641         11122222 222             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                                           +...|+++ +.++|+++..+.|..+.+.+.+.
T Consensus        73 ---------------------i~~~Pt~~-~~~~g~~~~~~~g~~~~~~l~~~  103 (104)
T cd02997          73 ---------------------VKGFPTFK-YFENGKFVEKYEGERTAEDIIEF  103 (104)
T ss_pred             ---------------------CccccEEE-EEeCCCeeEEeCCCCCHHHHHhh
Confidence                                 22223754 44689988899888887776654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.29  E-value=2.7e-11  Score=87.71  Aligned_cols=89  Identities=15%  Similarity=0.086  Sum_probs=66.5

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      +++++|+||++||++|+...|.++++.+++++. +.+..++.+.       .    .+.++ +++               
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~~-------~----~~l~~-~~~---------------  103 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDATR-------A----LNLAK-RFA---------------  103 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCcc-------c----HHHHH-HcC---------------
Confidence            589999999999999999999999999999764 7777776541       1    12222 322               


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         |...|++++++ +|+++..+.|..+.+++.+.+.+.++
T Consensus       104 -------------------I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~  140 (224)
T PTZ00443        104 -------------------IKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFK  140 (224)
T ss_pred             -------------------CCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence                               22233888887 78888877787888888888877653

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.26  E-value=5.3e-11  Score=75.27  Aligned_cols=42  Identities=12%  Similarity=0.033  Sum_probs=36.8

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++|+||++||++|+...+.|.++.+++ ..++.++.++.+
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~   55 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAE   55 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEccc
Confidence            699999999999999999999999999997 335888888653

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=99.25  E-value=4e-11  Score=97.99  Aligned_cols=94  Identities=14%  Similarity=0.118  Sum_probs=68.7

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      .+||+++|+||++||++|+.+.+.+   .++.++++  ++.++.++++.       +.++..+..+ +++          
T Consensus       472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~~-~~~----------  531 (571)
T PRK00293        472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALLK-HYN----------  531 (571)
T ss_pred             hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHHH-HcC----------
Confidence            3589999999999999999987764   56777775  48888888753       2223334443 322          


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE--EEeCCCCCchHHHHHHHHHh
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV--DRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~--~~~~~~~~~~~l~~~l~~~l  167 (170)
                                              +...|+++++|++|+++  .++.|..+++++.+.|+++.
T Consensus       532 ------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~  570 (571)
T PRK00293        532 ------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ  570 (571)
T ss_pred             ------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence                                    22223999999999984  67788889999999998753

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.23  E-value=4.1e-11  Score=76.71  Aligned_cols=87  Identities=15%  Similarity=0.122  Sum_probs=62.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .++++++.||++||++|+...+.+.++.+.++. .++.++.++.+.       .   ..+.++ +++             
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~~-~~~-------------   72 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLAK-KYG-------------   72 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhHH-hCC-------------
Confidence            357999999999999999999999999999973 358888887652       0   122232 222             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                                           +...|++++++++|+....+.|..+.+++.+.
T Consensus        73 ---------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~  104 (105)
T cd02998          73 ---------------------VSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF  104 (105)
T ss_pred             ---------------------CCCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence                                 12223889998887777778887777666654

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>PTZ00051 thioredoxin; Provisional

Probab=99.23  E-value=9.2e-11  Score=74.35  Aligned_cols=42  Identities=10%  Similarity=0.180  Sum_probs=37.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+++++|+||++||++|+...+.+.++.+++.+  +.++.|+.+
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~vd~~   58 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK--MVFVKVDVD   58 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC--cEEEEEECc
Confidence            478999999999999999999999999998754  888888764

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.22  E-value=2.2e-10  Score=73.87  Aligned_cols=43  Identities=14%  Similarity=-0.010  Sum_probs=39.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+|++||.|+++||++|+...|.|.++..++++. +.|+.|++|
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD   55 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD   55 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc
Confidence            5899999999999999999999999999999654 899999886

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.20  E-value=1.9e-10  Score=73.43  Aligned_cols=85  Identities=11%  Similarity=0.074  Sum_probs=60.9

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      +++++|.||++||++|+...|.+.++.+++.+. +.++.++.+.        .   .+.++ +++               
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~~--------~---~~~~~-~~~---------------   69 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDADV--------H---QSLAQ-QYG---------------   69 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECcc--------h---HHHHH-HCC---------------
Confidence            567999999999999999999999999998754 8888887651        1   12222 322               


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                                         +...|++++++++......+.|..+.+++.+++
T Consensus        70 -------------------i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~  102 (103)
T cd03001          70 -------------------VRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA  102 (103)
T ss_pred             -------------------CCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence                               222238888876546666677877777776553

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.20  E-value=3.9e-10  Score=73.54  Aligned_cols=90  Identities=12%  Similarity=0.224  Sum_probs=63.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +++.++|+||++||++|+...+.+.++.+++.  .+.+..|+.|.       .+    +... +                
T Consensus        21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~--~i~~~~vd~d~-------~~----~l~~-~----------------   70 (113)
T cd02975          21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELSD--KLKLEIYDFDE-------DK----EKAE-K----------------   70 (113)
T ss_pred             CCeEEEEEeCCCCCCChHHHHHHHHHHHHhcC--ceEEEEEeCCc-------CH----HHHH-H----------------
Confidence            45678999999999999999999999998873  38888888762       11    1221 2                


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCC---CcEEEEeCCCCCchHHHHHHHHHhcCC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN---GQVVDRYYPTTSLLSLEHDIKKLLGLS  170 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~---G~i~~~~~~~~~~~~l~~~l~~~l~~~  170 (170)
                                        +++...|++++.+.+   |.+  ++.|..+..++.+.|+.++..|
T Consensus        71 ------------------~~v~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~~~  113 (113)
T cd02975          71 ------------------YGVERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVRVS  113 (113)
T ss_pred             ------------------cCCCcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHhcC
Confidence                              123333487777643   333  4667777788999999988654

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.20  E-value=8.9e-11  Score=80.21  Aligned_cols=44  Identities=14%  Similarity=0.037  Sum_probs=40.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++||+||++||++|+...|.++++.+++.+.++.++.|++|
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd   89 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG   89 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC
Confidence            46799999999999999999999999999998767999999987

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.20  E-value=1.1e-10  Score=73.81  Aligned_cols=86  Identities=19%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ++++++|.||++||++|....+.+.++.+.++ ..++.++.++.+.           ....++ +++             
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~~~-~~~-------------   68 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-----------NNDLCS-EYG-------------   68 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-----------hHHHHH-hCC-------------
Confidence            45699999999999999999999999999985 4458999987641           223332 322             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                                           +...|++++++++|+....+.|..+.+++.+.
T Consensus        69 ---------------------i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~  100 (101)
T cd02961          69 ---------------------VRGYPTIKLFPNGSKEPVKYEGPRTLESLVEF  100 (101)
T ss_pred             ---------------------CCCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence                                 22234889999887777778777766666543

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.18  E-value=4.2e-10  Score=73.89  Aligned_cols=88  Identities=11%  Similarity=0.148  Sum_probs=65.3

Q ss_pred             CcEEEEEEecCCCCC--Ch--hhHHHHHHHHHHh-ccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           32 GKVLLIVNVASKCGM--TN--SNYIELSQLYDKY-KDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        32 gk~~lv~f~~~~C~~--C~--~~~~~l~~~~~~~-~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      ..++|++||+.||++  |+  ...|.+.++..++ ++.++.++.|++|.        ..   +.++ ++++         
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--------~~---~La~-~~~I---------   85 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--------DA---KVAK-KLGL---------   85 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--------CH---HHHH-HcCC---------
Confidence            469999999999988  99  7778888888887 23459999999872        12   2222 4332         


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                            .++   ||++++ +||+++. +.|..+.+.+.+.|++++
T Consensus        86 ----------------------~~i---PTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~  119 (120)
T cd03065          86 ----------------------DEE---DSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI  119 (120)
T ss_pred             ----------------------ccc---cEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence                                  122   276666 5899887 889889999999999876

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=99.17  E-value=1.6e-10  Score=83.13  Aligned_cols=143  Identities=14%  Similarity=0.163  Sum_probs=99.5

Q ss_pred             ccccCCcccccceeeCCCCCe-ecCCCC-C-CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC-----
Q 030881            4 QFIQNPESIFDLSVKDARGHE-VDLSTY-K-GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ-----   75 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~-~~l~~~-~-gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~-----   75 (170)
                      +.+..|..|||..+.+.+|.. .++-|+ + ++|+||+|.+-.||+-+..+..++++.++|.+. +.++.|=+..     
T Consensus        71 ~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAHpsD  149 (237)
T PF00837_consen   71 KEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAHPSD  149 (237)
T ss_pred             cceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhCcCC
Confidence            346689999999999999988 999998 3 599999999988999999999999999999875 4555552210     


Q ss_pred             --------CCCCCCCChH---HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC
Q 030881           76 --------FGEEEPGSND---QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG  144 (170)
Q Consensus        76 --------~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G  144 (170)
                              +.-..+.+.+   ..++.+. +....+|++  .|.........|+    +.|         + +.|||. +|
T Consensus       150 gW~~~~~~~~i~qh~sledR~~aA~~l~-~~~~~~pi~--vD~mdN~~~~~Yg----A~P---------e-RlyIi~-~g  211 (237)
T PF00837_consen  150 GWAFGNNPYEIPQHRSLEDRLRAAKLLK-EEFPQCPIV--VDTMDNNFNKAYG----ALP---------E-RLYIIQ-DG  211 (237)
T ss_pred             CccCCCCceeecCCCCHHHHHHHHHHHH-hhCCCCCEE--EEccCCHHHHHhC----CCc---------c-eEEEEE-CC
Confidence                    1111233333   3344444 334678888  6766555544333    222         1 668885 99


Q ss_pred             cEEEEeC-C--CCCchHHHHHHHH
Q 030881          145 QVVDRYY-P--TTSLLSLEHDIKK  165 (170)
Q Consensus       145 ~i~~~~~-~--~~~~~~l~~~l~~  165 (170)
                      +|+|... |  ...++++++.|++
T Consensus       212 kv~Y~Gg~GP~~y~~~e~r~~L~~  235 (237)
T PF00837_consen  212 KVVYKGGPGPFGYSPEELREWLEK  235 (237)
T ss_pred             EEEEeCCCCCCcCCHHHHHHHHHh
Confidence            9999932 2  2366778888875

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.16  E-value=6.3e-10  Score=73.51  Aligned_cols=45  Identities=9%  Similarity=0.043  Sum_probs=32.8

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d   74 (170)
                      .-.||+++|+|+++||++|+.+.+..   .++.+.+.+ ++.+|.++.+
T Consensus        12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~   59 (124)
T cd02955          12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE   59 (124)
T ss_pred             HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC
Confidence            34689999999999999999887633   245555433 3777777654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.12  E-value=4.9e-10  Score=73.06  Aligned_cols=41  Identities=12%  Similarity=0.132  Sum_probs=37.2

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++|+||++||++|+...|.++++.+++.+  +.++.|+.+
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~--v~f~~vd~~   64 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE--TKFVKINAE   64 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC--cEEEEEEch
Confidence            58999999999999999999999999999864  888888764

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.12  E-value=4.3e-10  Score=89.17  Aligned_cols=44  Identities=18%  Similarity=0.322  Sum_probs=41.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++||+||++||++|+.+.|.+.++.+++++.++.|+.|++|
T Consensus       370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD  413 (463)
T TIGR00424       370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD  413 (463)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence            67899999999999999999999999999998878999999886

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=99.11  E-value=2.7e-10  Score=72.77  Aligned_cols=44  Identities=20%  Similarity=0.219  Sum_probs=38.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d   74 (170)
                      .+++++|+||++||++|+...+.+.++.+.+++ ..+.+..|+.+
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~   61 (104)
T cd02995          17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT   61 (104)
T ss_pred             CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence            368999999999999999999999999999977 35888888764

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=6.3e-10  Score=80.06  Aligned_cols=93  Identities=22%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      ++...+|.++|.|.++||+||....|.++.+..+|++  ..|+-|++|           +....++ .            
T Consensus        16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~--aVFlkVdVd-----------~c~~taa-~------------   69 (288)
T KOG0908|consen   16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG--AVFLKVDVD-----------ECRGTAA-T------------   69 (288)
T ss_pred             hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc--cEEEEEeHH-----------Hhhchhh-h------------
Confidence            4445679999999999999999999999999999954  899999775           3344333 2            


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                            .+|...|| |+.-+||+-+..+.| .++..|++.+++.+..
T Consensus        70 ----------------------~gV~amPT-Fiff~ng~kid~~qG-Ad~~gLe~kv~~~~st  108 (288)
T KOG0908|consen   70 ----------------------NGVNAMPT-FIFFRNGVKIDQIQG-ADASGLEEKVAKYAST  108 (288)
T ss_pred             ----------------------cCcccCce-EEEEecCeEeeeecC-CCHHHHHHHHHHHhcc
Confidence                                  12222336 666689998998877 5777899999887653

>PTZ00102 disulphide isomerase; Provisional

Probab=99.09  E-value=3.1e-10  Score=91.12  Aligned_cols=106  Identities=15%  Similarity=0.089  Sum_probs=75.6

Q ss_pred             eeCCCCCeecCC-CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881           17 VKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTR   94 (170)
Q Consensus        17 l~~~~g~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~   94 (170)
                      +..+.|..+.-. .-.|+.++|+||++||++|+...|.++++.+.+++. .+.+..++.+.       +. .   .+. +
T Consensus       359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~-~---~~~-~  426 (477)
T PTZ00102        359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NE-T---PLE-E  426 (477)
T ss_pred             eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cc-c---chh-c
Confidence            444556555432 235899999999999999999999999999998764 37777777642       10 0   010 1


Q ss_pred             cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881           95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                                        ..+...|+++++++++++...+.|..+.+.+.+.|++.+.
T Consensus       427 ----------------------------------~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~  466 (477)
T PTZ00102        427 ----------------------------------FSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT  466 (477)
T ss_pred             ----------------------------------CCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence                                              1122223999999888877778898999999999988764

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.07  E-value=1.6e-09  Score=70.62  Aligned_cols=42  Identities=7%  Similarity=-0.069  Sum_probs=38.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+++++|+||++||++|+...|.+.++.+++.+  +.++.|+.+
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~--i~f~~Vd~~   62 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE--TKFIKVNAE   62 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC--CEEEEEEcc
Confidence            468999999999999999999999999999864  899999876

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.06  E-value=4.2e-09  Score=64.41  Aligned_cols=39  Identities=8%  Similarity=0.093  Sum_probs=33.9

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|..||++||++|....+.++++.++++.. +.++.|+.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~   40 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVM   40 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCc
Confidence            467899999999999999999999998654 888888765

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.06  E-value=1.2e-09  Score=71.28  Aligned_cols=43  Identities=19%  Similarity=0.210  Sum_probs=36.7

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d   74 (170)
                      +++++|.||++||++|+...+.++++.+.+++.  .+.+..++.+
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~   63 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA   63 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence            479999999999999999999999999988653  2777777653

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=99.05  E-value=4.1e-09  Score=68.76  Aligned_cols=96  Identities=14%  Similarity=0.118  Sum_probs=66.4

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI  105 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (170)
                      .-++|+++|+|.++||++|......+   .++.+.+++ ...++.++.+        + .+..++.. .++         
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~-~e~~~~~~-~~~---------   73 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------S-SEGQRFLQ-SYK---------   73 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------C-ccHHHHHH-HhC---------
Confidence            34689999999999999999876543   234444443 3555555443        1 22334433 211         


Q ss_pred             ecCCCCchhHHHHhHhccCCccCCccccCceeEEECC-CCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                    .        ..+   |++++||+ +|+++.+..|..+++++...|++++..
T Consensus        74 --------------~--------~~~---P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~  113 (114)
T cd02958          74 --------------V--------DKY---PHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE  113 (114)
T ss_pred             --------------c--------cCC---CeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence                          1        122   38899999 899999999999999999999988753

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=99.05  E-value=2.1e-09  Score=66.53  Aligned_cols=41  Identities=15%  Similarity=0.176  Sum_probs=36.6

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++|+||++||++|....+.++++.+.  ..++.++.++.+
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~   50 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD   50 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC
Confidence            38999999999999999999999999988  345999999875

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.05  E-value=8.2e-10  Score=72.32  Aligned_cols=43  Identities=12%  Similarity=0.087  Sum_probs=39.5

Q ss_pred             CCcEEEEEEec-------CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +|++++|+|||       +||++|+...|.++++.+++++ ++.++.|+++
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd   69 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVG   69 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcC
Confidence            58999999999       9999999999999999999974 3999999986

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.03  E-value=3.2e-09  Score=68.42  Aligned_cols=82  Identities=12%  Similarity=0.139  Sum_probs=61.5

Q ss_pred             CCcEEEEEEecCC--CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASK--CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .|.++||.||++|  ||+|....|.|.++.+++.+. +.++.|+.|+       .+ ++..    +|+            
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~-------~~-~la~----~f~------------   80 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRAD-------EQ-ALAA----RFG------------   80 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCC-------CH-HHHH----HcC------------
Confidence            6789999999997  999999999999999999766 8888998863       22 2222    322            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHH
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE  160 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~  160 (170)
                                            |...||++++ ++|+++....|..+.+++.
T Consensus        81 ----------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~~  109 (111)
T cd02965          81 ----------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEYV  109 (111)
T ss_pred             ----------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence                                  2222375555 6899999998877776654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.02  E-value=3.5e-09  Score=74.21  Aligned_cols=41  Identities=7%  Similarity=0.011  Sum_probs=37.3

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++++||+||++||++|....|.|.++..++..  +.|+.|+.+
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~--vkF~kVd~d  123 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA--VKFCKIRAS  123 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC--eEEEEEecc
Confidence            35999999999999999999999999999864  999999875

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN02309 5'-adenylylsulfate reductase

Probab=99.02  E-value=2.2e-09  Score=85.08  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++||.||++||++|+.+.|.+.++.+++...++.|+.|+.|
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d  407 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD  407 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence            68999999999999999999999999999998878999999875

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.99  E-value=4.7e-09  Score=74.56  Aligned_cols=41  Identities=12%  Similarity=0.101  Sum_probs=37.3

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++|||+||++||++|....+.|++++.+|..  +.|+.|+.+
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~--vkFvkI~ad  142 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD--TKFVKIIST  142 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence            46999999999999999999999999999964  999999763

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.97  E-value=2.1e-09  Score=85.82  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=67.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      ++++++|.||++||++|+...|.+.++.+.+.+.+  +.++.|+++.       .    .+.++ ++++           
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~~-~~~i-----------   73 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLAQ-KYGV-----------   73 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHHH-hCCC-----------
Confidence            57899999999999999999999999999987665  8888888752       1    22332 3222           


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE-EEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i-~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                             ...|+++++ ++|+. +..+.|..+.+.+.+.+.+.+.
T Consensus        74 -----------------------~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~  110 (462)
T TIGR01130        74 -----------------------SGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSG  110 (462)
T ss_pred             -----------------------ccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence                                   222376666 46776 6778888888889888887764

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=98.93  E-value=3.9e-09  Score=84.82  Aligned_cols=90  Identities=17%  Similarity=0.188  Sum_probs=65.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      +++.++|.||++||++|+...|.+.++...+++.  ++.+..|+++.       .    .+.++ ++++           
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~----~~l~~-~~~i-----------  104 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------E----MELAQ-EFGV-----------  104 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------C----HHHHH-hcCC-----------
Confidence            5789999999999999999999999999888654  37788887641       1    12232 3222           


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                             ...|+++++...+ .+ .+.|..+.+.+.+.|++++.
T Consensus       105 -----------------------~~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~~  139 (477)
T PTZ00102        105 -----------------------RGYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLTG  139 (477)
T ss_pred             -----------------------CcccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhhC
Confidence                                   2223878887544 44 77888899999999988764

>PTZ00062 glutaredoxin; Provisional

Probab=98.84  E-value=2.9e-08  Score=70.93  Aligned_cols=77  Identities=13%  Similarity=0.050  Sum_probs=58.4

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCc
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHA  112 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~  112 (170)
                      ..+|++||++||++|+...+.|.++.+++.+  +.|+.|+.|                    +++               
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d--------------------~~V---------------   60 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA--------------------DAN---------------   60 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc--------------------cCc---------------
Confidence            6789999999999999999999999999965  889888531                    111               


Q ss_pred             hhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          113 SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                      ..+|   +++++ ++|+++.+..|. ++.++...+.++.
T Consensus        61 ----------------~~vP---tfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~~   94 (204)
T PTZ00062         61 ----------------NEYG---VFEFY-QNSQLINSLEGC-NTSTLVSFIRGWA   94 (204)
T ss_pred             ----------------ccce---EEEEE-ECCEEEeeeeCC-CHHHHHHHHHHHc
Confidence                            1333   75555 689999998874 5666777766554

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.78  E-value=7.6e-08  Score=61.33  Aligned_cols=43  Identities=16%  Similarity=0.242  Sum_probs=39.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|+++++.|+++||++|....+.+.++.++++++ +.++.|+.+
T Consensus        11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~   53 (103)
T cd02982          11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD   53 (103)
T ss_pred             cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence            3789999999999999999999999999999866 999999765

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.77  E-value=3e-08  Score=71.65  Aligned_cols=99  Identities=23%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      +.++.+++-|++|+.+.|++|..+.|.|+.+.+++   |+.++.||+|.-                  ....||...  .
T Consensus       115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~------------------~~~~fp~~~--~  171 (215)
T PF13728_consen  115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGR------------------PIPSFPNPR--P  171 (215)
T ss_pred             HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCC------------------CCcCCCCCC--C
Confidence            44557889999999999999999999999999996   699999999831                  011222210  0


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC-cEEEEeCCCCCchHHHHHH
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-QVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G-~i~~~~~~~~~~~~l~~~l  163 (170)
                       +   ...+-.           .++...|++||+++++ ++.....|..+.++|.+.|
T Consensus       172 -~---~g~~~~-----------l~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri  214 (215)
T PF13728_consen  172 -D---PGQAKR-----------LGVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI  214 (215)
T ss_pred             -C---HHHHHH-----------cCCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence             0   000001           2344556999999988 6666678888888877654

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.77  E-value=9.2e-08  Score=57.82  Aligned_cols=36  Identities=8%  Similarity=0.040  Sum_probs=30.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP   72 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is   72 (170)
                      .|.||++||++|....|.++++.+++... +.++-|+
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v~   37 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKVT   37 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEeC
Confidence            37899999999999999999999998644 6776663

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.76  E-value=4.1e-08  Score=72.34  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=74.7

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      +.++.+++-|++|+.+.|++|..+.|.++.+.+++   |+.++.||+|.                  .....||... .|
T Consensus       145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG------------------~~~p~fp~~~-~d  202 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---GISVIPISVDG------------------TLIPGLPNSR-SD  202 (256)
T ss_pred             HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCC------------------CCCCCCCCcc-CC
Confidence            44556789999999999999999999999999995   59999999983                  1111233221 01


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                           ...+..           .++...|++||++++ +++.-...|..+.++|.+.|..++.
T Consensus       203 -----~gqa~~-----------l~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~  249 (256)
T TIGR02739       203 -----SGQAQH-----------LGVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLT  249 (256)
T ss_pred             -----hHHHHh-----------cCCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence                 000001           234455699999999 6666668899999999998877653

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.73  E-value=5.6e-08  Score=71.27  Aligned_cols=104  Identities=14%  Similarity=0.156  Sum_probs=75.0

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      +.++.+++-|++|+.+.|++|..+.|.|+.+.+++   |+.++.||+|.-                  ....||... .|
T Consensus       138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG~------------------~~p~fp~~~-~d  195 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY---GLSVIPVSVDGV------------------INPLLPDSR-TD  195 (248)
T ss_pred             HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh---CCeEEEEecCCC------------------CCCCCCCCc-cC
Confidence            44556789999999999999999999999999995   699999999841                  111233220 01


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC-cEEEEeCCCCCchHHHHHHHHHhc
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-QVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G-~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      .  ..+   -.           .++...|++||++++. ++.-...|..+.++|.+.|..++.
T Consensus       196 ~--gqa---~~-----------l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t  242 (248)
T PRK13703        196 Q--GQA---QR-----------LGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVST  242 (248)
T ss_pred             h--hHH---Hh-----------cCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence            0  000   01           2455566999999985 777778899999999998887654

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.73  E-value=1.4e-07  Score=62.60  Aligned_cols=25  Identities=12%  Similarity=0.244  Sum_probs=22.2

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL   54 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l   54 (170)
                      -.||+++|+|++.||++|+..-..+
T Consensus        21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~   45 (130)
T cd02960          21 KSNKPLMVIHHLEDCPHSQALKKAF   45 (130)
T ss_pred             HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence            3689999999999999999987765

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.70  E-value=1.4e-07  Score=68.34  Aligned_cols=92  Identities=12%  Similarity=0.173  Sum_probs=60.5

Q ss_pred             CCCCcEEEEEEec---CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881           29 TYKGKVLLIVNVA---SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI  105 (170)
Q Consensus        29 ~~~gk~~lv~f~~---~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (170)
                      ..++...++.|.+   +||++|....|.+.++.+++.+  +.+..+++|.         ++..+.++ +++         
T Consensus        16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~---------~~~~~l~~-~~~---------   74 (215)
T TIGR02187        16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT---------PEDKEEAE-KYG---------   74 (215)
T ss_pred             hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC---------cccHHHHH-HcC---------
Confidence            3455555666777   9999999999999999999853  5555555541         11122222 322         


Q ss_pred             ecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE-EEeCCCCCchHHHHHHHHHh
Q 030881          106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV-DRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~-~~~~~~~~~~~l~~~l~~~l  167 (170)
                                               |...||+++++ +|+.+ .++.|..+.+++.+.|+.++
T Consensus        75 -------------------------V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~  111 (215)
T TIGR02187        75 -------------------------VERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIV  111 (215)
T ss_pred             -------------------------CCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHH
Confidence                                     22233866665 57776 47888778888888888775

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=9.4e-08  Score=75.96  Aligned_cols=90  Identities=13%  Similarity=0.192  Sum_probs=66.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      ....++|.|||+||++|....|++.+....+++.  .+.+..|...         . . ...+. ++++           
T Consensus        41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---------~-~-~~~~~-~y~v-----------   97 (493)
T KOG0190|consen   41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---------E-E-SDLAS-KYEV-----------   97 (493)
T ss_pred             cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---------h-h-hhhHh-hhcC-----------
Confidence            4579999999999999999999999999999987  4677777532         1 2 44443 4332           


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                             +..|| .-|.+||+....|.|....+.+..+|++..
T Consensus        98 -----------------------~gyPT-lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~  132 (493)
T KOG0190|consen   98 -----------------------RGYPT-LKIFRNGRSAQDYNGPREADGIVKWLKKQS  132 (493)
T ss_pred             -----------------------CCCCe-EEEEecCCcceeccCcccHHHHHHHHHhcc
Confidence                                   22224 456688998777888888888888887653

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.64  E-value=2.4e-07  Score=74.05  Aligned_cols=90  Identities=20%  Similarity=0.175  Sum_probs=65.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .++.+||+||++||++|....|.+.++.+.+++.  ++.++.++++.       +  +    +.     .+.        
T Consensus       363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n--~----~~-----~~~--------  416 (462)
T TIGR01130       363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N--D----VP-----PFE--------  416 (462)
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C--c----cC-----CCC--------
Confidence            4799999999999999999999999999999872  58888887642       1  0    00     000        


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE-EEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i-~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                 .        ..+   |+++++.+.++. ...+.|..+.+.+.+.|.+..+
T Consensus       417 -----------i--------~~~---Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  455 (462)
T TIGR01130       417 -----------V--------EGF---PTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT  455 (462)
T ss_pred             -----------c--------ccc---CEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence                       1        123   388898766652 3456777888888888887654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.58  E-value=6.5e-07  Score=64.84  Aligned_cols=43  Identities=12%  Similarity=0.013  Sum_probs=33.2

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..+..+|+.||++||++|....+.++++..+..  .+.+..++.+
T Consensus       131 ~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~  173 (215)
T TIGR02187       131 LDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN  173 (215)
T ss_pred             cCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence            345566777999999999999998888888753  3777777654

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>smart00594 UAS UAS domain

Probab=98.49  E-value=1.2e-06  Score=57.81  Aligned_cols=89  Identities=9%  Similarity=0.019  Sum_probs=58.5

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      -.+|+++|+|.+.||++|......+   .++.+.+++ ++.++.+++.        +.+. .+.+. .++.         
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~eg-~~l~~-~~~~---------   84 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSEG-QRVSQ-FYKL---------   84 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------ChhH-HHHHH-hcCc---------
Confidence            3689999999999999999987654   234444433 4666666553        2222 23332 3221         


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC-----cEEEEeCCCCCchHHHHHH
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG-----QVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G-----~i~~~~~~~~~~~~l~~~l  163 (170)
                                            .+.   |++.+++++|     .++.+..|..+++++.+.|
T Consensus        85 ----------------------~~~---P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       85 ----------------------DSF---PYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             ----------------------CCC---CEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence                                  112   2889999998     5777788888988887765

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.47  E-value=4.3e-07  Score=58.17  Aligned_cols=49  Identities=27%  Similarity=0.365  Sum_probs=41.8

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .....++++++++.||++||++|....|.+.++.+++.. .+.++.++..
T Consensus        25 ~~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~   73 (127)
T COG0526          25 LSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVD   73 (127)
T ss_pred             eehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECC
Confidence            344445589999999999999999999999999999976 5888888863

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.46  E-value=2.5e-06  Score=53.15  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=39.0

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.++++...+..|+++||++|....+.++++.+.+.+  +.+..++.+
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~--i~~~~vd~~   52 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPN--IEHEMIDGA   52 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCC--ceEEEEEhH
Confidence            3467788899999999999999999999999988754  888888764

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.38  E-value=1.6e-06  Score=53.08  Aligned_cols=43  Identities=14%  Similarity=0.207  Sum_probs=33.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d   74 (170)
                      .||+++|+|+++||++|...-..+   .++.+.+. +++.++.|..+
T Consensus        16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~-~~fv~v~vd~~   61 (82)
T PF13899_consen   16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN-KNFVLVKVDVD   61 (82)
T ss_dssp             HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH-HCSEEEEEETT
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH-CCEEEEEEEcC
Confidence            689999999999999999988777   24444344 44888888764

...

>PHA02125 thioredoxin-like protein

Probab=98.38  E-value=3.3e-06  Score=50.79  Aligned_cols=32  Identities=9%  Similarity=0.035  Sum_probs=24.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|+++||++|+...|.|.++.       +.++.|+.+
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~   33 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTD   33 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCC
Confidence            78999999999999999886542       445666543

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=98.34  E-value=5.8e-06  Score=59.51  Aligned_cols=116  Identities=13%  Similarity=0.214  Sum_probs=77.9

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC---cEEEEeecCCCCCCCCCChHH
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG---LEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~---v~~v~is~d~~~~~~~~~~~~   86 (170)
                      .+.|.+++-    ....+.+..|+++||-+...+|..|..++..|..|..++.+.|   |.++.|+.-.      .....
T Consensus         8 ~~~p~W~i~----~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~------~~s~~   77 (238)
T PF04592_consen    8 KPPPPWKIG----GQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQG------EHSRL   77 (238)
T ss_pred             CCCCCceEC----CchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCC------cchhH
Confidence            345555543    3445788899999999999999999999999999999998775   7888887421      12222


Q ss_pred             HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881           87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus        87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                      +...++.+....+|++-    +......+|..+.....           -++|+|+-|++.+..
T Consensus        78 ~~~~l~~r~~~~ipVyq----q~~~q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i  126 (238)
T PF04592_consen   78 KYWELKRRVSEHIPVYQ----QDENQPDVWELLNGSKD-----------DFLIYDRCGRLTYHI  126 (238)
T ss_pred             HHHHHHHhCCCCCceec----CCccccCHHHHhCCCcC-----------cEEEEeccCcEEEEe
Confidence            22344445555688872    11222334444332222           559999999999984

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.34  E-value=3.1e-07  Score=61.16  Aligned_cols=90  Identities=13%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .....+..++.|..+|||.|....|.|.++.+..+.  +.+=-++.|           +-.+... ++    ..      
T Consensus        37 ~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~--i~~~~i~rd-----------~~~el~~-~~----lt------   92 (129)
T PF14595_consen   37 KSIQKPYNILVITETWCGDCARNVPVLAKIAEANPN--IEVRIILRD-----------ENKELMD-QY----LT------   92 (129)
T ss_dssp             HT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT--EEEEEE-HH-----------HHHHHTT-TT----TT------
T ss_pred             HhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC--CeEEEEEec-----------CChhHHH-HH----Hh------
Confidence            344567899999999999999999999999999654  555555332           2223222 11    00      


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      .          ..        ..||   +++++|.+|+.+.++.+  .|+.+.+.+.
T Consensus        93 ~----------g~--------~~IP---~~I~~d~~~~~lg~wge--rP~~~~~~~~  126 (129)
T PF14595_consen   93 N----------GG--------RSIP---TFIFLDKDGKELGRWGE--RPKEVQELVD  126 (129)
T ss_dssp             -----------SS----------SS---EEEEE-TT--EEEEEES--S-HHHH----
T ss_pred             C----------CC--------eecC---EEEEEcCCCCEeEEEcC--CCHHHhhccc
Confidence            0          00        2344   99999999999988754  4455554443

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.33  E-value=1.5e-06  Score=70.04  Aligned_cols=94  Identities=12%  Similarity=0.071  Sum_probs=70.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH-HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL-SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l-~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ++|+|+|+|+|.||-.|+..-+.. ++.+..++-.+++.+-.+.-       .+..+..+..+ +++.            
T Consensus       473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lLk-~~~~------------  532 (569)
T COG4232         473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALLK-RLGV------------  532 (569)
T ss_pred             CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHHH-HcCC------------
Confidence            556999999999999999886654 45566666667888888763       24556666665 4322            


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                         .++|   ++++++++|.-.....|..+.+.+++.|++.
T Consensus       533 -------------------~G~P---~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~  567 (569)
T COG4232         533 -------------------FGVP---TYLFFGPQGSEPEILTGFLTADAFLEHLERA  567 (569)
T ss_pred             -------------------CCCC---EEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence                               2344   8899999998777788888999999998875

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=3e-05  Score=61.00  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=36.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .++..+|.|+++||++|.+..|.+.++...+++. +.+..|..
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~   87 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDC   87 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCc
Confidence            5689999999999999999999999999999773 66666654

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.11  E-value=1.3e-05  Score=46.93  Aligned_cols=38  Identities=8%  Similarity=0.045  Sum_probs=31.7

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      -|..|+++||++|....+.++++.+...  ++.+..++.+
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~   39 (67)
T cd02973           2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA   39 (67)
T ss_pred             EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence            4678999999999999999999977653  4888888765

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=98.11  E-value=8.5e-05  Score=52.90  Aligned_cols=119  Identities=17%  Similarity=0.230  Sum_probs=79.9

Q ss_pred             cceeeCCCCCeecCCCC-CCc--EEEEEEe-----cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881           14 DLSVKDARGHEVDLSTY-KGK--VLLIVNV-----ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus        14 ~f~l~~~~g~~~~l~~~-~gk--~~lv~f~-----~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      +..+...+|. ++|.++ .|+  .+|..|.     ..-|+.|...+..+......+.++++.++.||-.        ..+
T Consensus        48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSra--------P~~  118 (211)
T PF05988_consen   48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRA--------PLE  118 (211)
T ss_pred             CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCC--------CHH
Confidence            4566666776 888885 664  5555555     3459999999999988888898899999999864        678


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      ++..|.+ ++|-++|+++..+..-.     ++|.....++   ...|.. ++|+-|. |+|...|..
T Consensus       119 ~i~afk~-rmGW~~pw~Ss~gs~Fn-----~D~~~~~~~~---~~~~g~-svF~Rdg-~~VfhTyst  174 (211)
T PF05988_consen  119 KIEAFKR-RMGWTFPWYSSYGSDFN-----YDFGVSFDEG---GEMPGL-SVFLRDG-GRVFHTYST  174 (211)
T ss_pred             HHHHHHH-hcCCCceEEEcCCCccc-----ccccceeccC---CCceeE-EEEEEcC-CEEEEEeec
Confidence            9999987 88999999964432211     1121111110   122222 6666665 888777643

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.09  E-value=8.9e-06  Score=60.66  Aligned_cols=89  Identities=22%  Similarity=0.375  Sum_probs=62.2

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccC----CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC-CCCceEEee
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ----GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS-EFPIFEKID  106 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~----~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~d  106 (170)
                      ...++|.|+|.||+.++...|.+.+..+.++++    .+.+-.|++|        ....+++    +|.+ .||.+    
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--------~e~~ia~----ky~I~KyPTl----   76 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--------KEDDIAD----KYHINKYPTL----   76 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--------hhhHHhh----hhccccCcee----
Confidence            679999999999999999999999877666543    3555556554        2233332    4333 24443    


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhc
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~  168 (170)
                                                      =|-+||.+..+ |.|..+.+.+.+.|++.++
T Consensus        77 --------------------------------KvfrnG~~~~rEYRg~RsVeaL~efi~kq~s  107 (375)
T KOG0912|consen   77 --------------------------------KVFRNGEMMKREYRGQRSVEALIEFIEKQLS  107 (375)
T ss_pred             --------------------------------eeeeccchhhhhhccchhHHHHHHHHHHHhc
Confidence                                            22357887774 8888888889999888765

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=98.00  E-value=8.7e-05  Score=43.73  Aligned_cols=32  Identities=13%  Similarity=0.161  Sum_probs=25.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +..|+++||++|....+.|.+       .++.+..++++
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~   33 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE   33 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc
Confidence            567889999999998776654       46888888775

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.99  E-value=3.8e-05  Score=43.31  Aligned_cols=38  Identities=18%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~   75 (170)
                      |+.||++||++|....+.++++  +....++.++.++.+.
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~   38 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDE   38 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCC
Confidence            5789999999999999999998  4455679999999863

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=97.93  E-value=0.0013  Score=44.91  Aligned_cols=142  Identities=18%  Similarity=0.197  Sum_probs=88.3

Q ss_pred             cCCcccccceeeCC-----CCCee-----cCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHH-hccCCcEEEEe-ecC
Q 030881            7 QNPESIFDLSVKDA-----RGHEV-----DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK-YKDQGLEILAF-PCN   74 (170)
Q Consensus         7 ~~g~~~p~f~l~~~-----~g~~~-----~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~v~~v~i-s~d   74 (170)
                      ..|.++|..++.|.     +|..+     +..++.||+.+|...|-.-..-....|-+..+.+. |+....+..+| +.|
T Consensus         2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d   81 (160)
T PF09695_consen    2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD   81 (160)
T ss_pred             cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence            46788898887653     34444     55557899999999976655555566777777766 55555666655 333


Q ss_pred             CCCCCCCCChHHHHHHHHhhcCCCCCceE-EeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           75 QFGEEEPGSNDQIADFVCTRFKSEFPIFE-KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                      +   .-..+..=++..++ ...-.||+-. ..|.++.. ...|+.     ++.       +-.++++|++|+|++...|.
T Consensus        82 D---Ai~gt~~fVrss~e-~~kk~~p~s~~vlD~~G~~-~~aW~L-----~~~-------~SaiiVlDK~G~V~F~k~G~  144 (160)
T PF09695_consen   82 D---AIWGTGGFVRSSAE-DSKKEFPWSQFVLDSNGVV-RKAWQL-----QEE-------SSAIIVLDKQGKVQFVKEGA  144 (160)
T ss_pred             c---ccccchHHHHHHHH-HhhhhCCCcEEEEcCCCce-eccccC-----CCC-------CceEEEEcCCccEEEEECCC
Confidence            1   11233333444443 3343455421 26766653 223331     111       11789999999999999999


Q ss_pred             CCchHHHHHHHH
Q 030881          154 TSLLSLEHDIKK  165 (170)
Q Consensus       154 ~~~~~l~~~l~~  165 (170)
                      ++++++.+.|.-
T Consensus       145 Ls~~Ev~qVi~L  156 (160)
T PF09695_consen  145 LSPAEVQQVIAL  156 (160)
T ss_pred             CCHHHHHHHHHH
Confidence            999998887753

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=6.9e-05  Score=50.34  Aligned_cols=132  Identities=21%  Similarity=0.234  Sum_probs=81.3

Q ss_pred             ccCCcccccceeeCCCC-------CeecCCCC-CCc-EEEEEEecCCCCCChh-hHHHHHHHHHHhccCCc-EEEEeecC
Q 030881            6 IQNPESIFDLSVKDARG-------HEVDLSTY-KGK-VLLIVNVASKCGMTNS-NYIELSQLYDKYKDQGL-EILAFPCN   74 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g-------~~~~l~~~-~gk-~~lv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~v-~~v~is~d   74 (170)
                      ...|+++|..++....+       ..++.+++ +|| ++|+..-+.+.|.|.. .+|.+.+++++++++|| .++-||++
T Consensus         3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN   82 (165)
T COG0678           3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN   82 (165)
T ss_pred             cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence            56899999999887632       23555564 775 5555556889999997 79999999999999986 44555654


Q ss_pred             CCCCCCCCChHHHHHHHHhhcCCC--CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           75 QFGEEEPGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                              +.-.+..|.+ ..+..  ..++  .|-++.-.+.+ +++.....  .|.++..+ ++-.+=.||.|.+.+..
T Consensus        83 --------D~FVm~AWak-~~g~~~~I~fi--~Dg~geFTk~~-Gm~~d~~~--~g~G~RS~-RYsmvV~nGvV~~~~iE  147 (165)
T COG0678          83 --------DAFVMNAWAK-SQGGEGNIKFI--PDGNGEFTKAM-GMLVDKSD--LGFGVRSW-RYSMVVENGVVEKLFIE  147 (165)
T ss_pred             --------cHHHHHHHHH-hcCCCccEEEe--cCCCchhhhhc-Cceeeccc--CCcceeee-eEEEEEeCCeEEEEEec
Confidence                    5667777776 33433  3344  55444432211 11111111  11334444 44444468998887644

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.85  E-value=0.00025  Score=46.35  Aligned_cols=92  Identities=10%  Similarity=0.093  Sum_probs=61.2

Q ss_pred             CCCCcEEEEEEecC----CCCCChhhH--HHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC-CCCc
Q 030881           29 TYKGKVLLIVNVAS----KCGMTNSNY--IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS-EFPI  101 (170)
Q Consensus        29 ~~~gk~~lv~f~~~----~C~~C~~~~--~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~  101 (170)
                      .-.+|+++|+++++    ||..|+..+  +.+.++.++    ++.+.+.++.        +.+ -.+... .++. +|| 
T Consensus        14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~----~fv~w~~dv~--------~~e-g~~la~-~l~~~~~P-   78 (116)
T cd02991          14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT----RMLFWACSVA--------KPE-GYRVSQ-ALRERTYP-   78 (116)
T ss_pred             HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc----CEEEEEEecC--------ChH-HHHHHH-HhCCCCCC-
Confidence            34679999999998    777887654  555555542    3666666654        222 122221 2111 233 


Q ss_pred             eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEE---CCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLV---DKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~li---d~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                        ++.+|   +.+.+++.+..|..+++++...|+.++.+
T Consensus        79 ----------------------------------~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~  115 (116)
T cd02991          79 ----------------------------------FLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA  115 (116)
T ss_pred             ----------------------------------EEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence                                              55677   66778899999999999999999988764

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.85  E-value=0.00016  Score=43.16  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=23.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +..||++||++|+...+.|.++       ++.+-.++++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~   33 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE   33 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence            5789999999999988776543       4555566665

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=1.8e-05  Score=63.23  Aligned_cols=43  Identities=28%  Similarity=0.375  Sum_probs=37.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~   73 (170)
                      .+|-+||.|+|+||++|....|.+++|.+.+++. ++.+.-+..
T Consensus       383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDa  426 (493)
T KOG0190|consen  383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDA  426 (493)
T ss_pred             cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEecc
Confidence            5799999999999999999999999999999986 566666643

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=97.83  E-value=8.1e-05  Score=48.50  Aligned_cols=43  Identities=12%  Similarity=0.003  Sum_probs=31.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQ   75 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~   75 (170)
                      +.+.+||.|+++| |.|-+ .|+..++..++...  .+.+..|.+++
T Consensus        17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d   61 (116)
T cd03007          17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD   61 (116)
T ss_pred             cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence            5689999999966 55555 48888888777432  37788887753

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.73  E-value=0.00054  Score=47.23  Aligned_cols=81  Identities=11%  Similarity=0.059  Sum_probs=40.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHH-HH--HHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIE-LS--QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~-l~--~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .+|+++|++.++||..|+.+..+ ++  ++.+.+++.   ||.|-+|.      +...++..... .+            
T Consensus        36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~---FI~VkvDr------ee~Pdid~~y~-~~------------   93 (163)
T PF03190_consen   36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN---FIPVKVDR------EERPDIDKIYM-NA------------   93 (163)
T ss_dssp             HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH----EEEEEET------TT-HHHHHHHH-HH------------
T ss_pred             cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC---EEEEEecc------ccCccHHHHHH-HH------------
Confidence            58999999999999999987642 22  233333322   44554442      24445544432 10            


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                               .......     +   .+|++++++|+|+..+..
T Consensus        94 ---------~~~~~~~-----g---GwPl~vfltPdg~p~~~~  119 (163)
T PF03190_consen   94 ---------VQAMSGS-----G---GWPLTVFLTPDGKPFFGG  119 (163)
T ss_dssp             ---------HHHHHS-----------SSEEEEE-TTS-EEEEE
T ss_pred             ---------HHHhcCC-----C---CCCceEEECCCCCeeeee
Confidence                     0011111     1   234999999999999973

; PDB: 3IRA_A.

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=97.61  E-value=0.00083  Score=49.79  Aligned_cols=136  Identities=15%  Similarity=0.149  Sum_probs=72.7

Q ss_pred             CcccccceeeCCCCCeecCCC-CCCcEEEEEEecC-CCCCChhhH--HHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            9 PESIFDLSVKDARGHEVDLST-YKGKVLLIVNVAS-KCGMTNSNY--IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         9 g~~~p~f~l~~~~g~~~~l~~-~~gk~~lv~f~~~-~C~~C~~~~--~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      -.-+|+|...++.|+.+++.+ ++||+.||..+.+ |-..|...-  |...++...-.+ .++++-|++.+         
T Consensus        98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~-~~q~v~In~~e---------  167 (252)
T PF05176_consen   98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYG-RVQIVEINLIE---------  167 (252)
T ss_pred             CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCC-ceEEEEEecch---------
Confidence            346799999999999988888 5999888888754 433333221  223333222111 59999998741         


Q ss_pred             HHHHHHHHh----hcCCCCC-----ceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881           85 DQIADFVCT----RFKSEFP-----IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS  155 (170)
Q Consensus        85 ~~~~~~~~~----~~~~~~p-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~  155 (170)
                      .-++.++..    ...-..|     .+.... .+.....+..    .+.    -.=+....+||||++|+|++...|..+
T Consensus       168 ~~~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~-~~~~~~~iRe----~Lg----i~N~~~GYvyLVD~~grIRWagsG~At  238 (252)
T PF05176_consen  168 NWLKSWLVKLFMGSLRKSIPEERHDRYFIVY-RGQLSDDIRE----ALG----INNSYVGYVYLVDPNGRIRWAGSGPAT  238 (252)
T ss_pred             HHHHHHHHHHHhhhhhccCCHHHCceEEEEe-CCcccHHHHH----HhC----CCCCCcCeEEEECCCCeEEeCccCCCC
Confidence            222233221    1111111     111011 1100111101    110    000011177999999999999999888


Q ss_pred             chHHHHHH
Q 030881          156 LLSLEHDI  163 (170)
Q Consensus       156 ~~~l~~~l  163 (170)
                      +++++...
T Consensus       239 ~~E~~~L~  246 (252)
T PF05176_consen  239 PEELESLW  246 (252)
T ss_pred             HHHHHHHH
Confidence            88866544

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.60  E-value=0.00018  Score=43.71  Aligned_cols=47  Identities=19%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      |+.|+++|||+|....+.|.++.  .+. .+.++-|+.+       .+..++.+++.
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~-------~~~~~~~~~l~   47 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL-------SNGSEIQDYLE   47 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC-------CChHHHHHHHH
Confidence            46788999999999999998876  221 2677777654       24455555554

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0022  Score=43.63  Aligned_cols=103  Identities=15%  Similarity=0.110  Sum_probs=66.1

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEE-e
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK-I  105 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~  105 (170)
                      -.+|+.++.|-...|++|...-..+   .++++.+.++ +.++.+.....       .               |+... .
T Consensus        40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h-f~~~~l~i~~s-------k---------------pv~f~~g   96 (182)
T COG2143          40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH-FSAYYLNISYS-------K---------------PVLFKVG   96 (182)
T ss_pred             ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC-eEEEEEEeccC-------c---------------ceEeecC
Confidence            3689999999999999999876555   4566666555 77777765310       0               11100 0


Q ss_pred             ec-CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881          106 DV-NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       106 d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                      +. .....+++.+-          ..+...|++++.|.+|+-+....|..+++++...++-
T Consensus        97 ~kee~~s~~ELa~k----------f~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkY  147 (182)
T COG2143          97 DKEEKMSTEELAQK----------FAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKY  147 (182)
T ss_pred             ceeeeecHHHHHHH----------hccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHH
Confidence            11 00011122111          3455556999999999999999999999987776653

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=97.50  E-value=3.5e-05  Score=62.00  Aligned_cols=61  Identities=15%  Similarity=0.303  Sum_probs=48.1

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC-CCceE
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE-FPIFE  103 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~  103 (170)
                      +..+|.|+++||++|+...|.+.++.+...+..  +.+.+|++.         .+.-.+.++ +|+++ ||.+.
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lCR-ef~V~~~Ptlr  121 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLCR-EFSVSGYPTLR  121 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhHh-hcCCCCCceee
Confidence            588999999999999999999999999887663  677777764         344456665 77775 78765

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.23  E-value=0.0081  Score=40.05  Aligned_cols=98  Identities=15%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             ecCCCC--CCcEEEEEEec--CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881           25 VDLSTY--KGKVLLIVNVA--SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP  100 (170)
Q Consensus        25 ~~l~~~--~gk~~lv~f~~--~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p  100 (170)
                      -+++++  .+...+|+|-+  ..+|-+.-..-.|.++.++|.+..+.+..|+.|.        ..++..    +|++   
T Consensus        25 ~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--------~~~LA~----~fgV---   89 (132)
T PRK11509         25 SRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--------SEAIGD----RFGV---   89 (132)
T ss_pred             ccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--------CHHHHH----HcCC---
Confidence            345554  34556666664  3577888888888899999965458999998863        222222    4332   


Q ss_pred             ceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          101 IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       101 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                     ...||+ ++-++|+++....|..+.+++.+.|+++|..
T Consensus        90 -------------------------------~siPTL-l~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~  126 (132)
T PRK11509         90 -------------------------------FRFPAT-LVFTGGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_pred             -------------------------------ccCCEE-EEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence                                           222374 4557999999999999999999999999864

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=97.22  E-value=0.0068  Score=39.69  Aligned_cols=107  Identities=18%  Similarity=0.182  Sum_probs=65.5

Q ss_pred             cCCCCCCcEEEEEEec--CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC-CCChHHHHHHHHhhcCCCCCce
Q 030881           26 DLSTYKGKVLLIVNVA--SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE-PGSNDQIADFVCTRFKSEFPIF  102 (170)
Q Consensus        26 ~l~~~~gk~~lv~f~~--~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~-~~~~~~~~~~~~~~~~~~~p~~  102 (170)
                      +|++++++--+|.++|  ..-+.-..+...|++-...+.++.+.++.+.-+.+.... .-+........+ .++++    
T Consensus         2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~~~lr~-~l~~~----   76 (118)
T PF13778_consen    2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDIQALRK-RLRIP----   76 (118)
T ss_pred             ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHHHHHHH-HhCCC----
Confidence            3566766544444444  334455677888888888888888999998544321111 111222222221 32221    


Q ss_pred             EEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          103 EKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                                   +..++++||+++|.+..++....+++++-+.|+..
T Consensus        77 -----------------------------~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M  111 (118)
T PF13778_consen   77 -----------------------------PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM  111 (118)
T ss_pred             -----------------------------CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence                                         11128899999999999988888999888888753

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=97.16  E-value=0.00099  Score=50.03  Aligned_cols=35  Identities=17%  Similarity=0.173  Sum_probs=30.6

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCc
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL   66 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v   66 (170)
                      ...++|.|+|+||.+|++.-|...++--++++.|.
T Consensus        43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~   77 (468)
T KOG4277|consen   43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGL   77 (468)
T ss_pred             CCeEEEEeechhhhhcccccchhHHhCcchhhcCC
Confidence            36999999999999999999999988888877653

>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0065  Score=41.28  Aligned_cols=136  Identities=20%  Similarity=0.159  Sum_probs=79.7

Q ss_pred             ccccCCcccccceee---CC----CCCeecCCCC-CCc-EEEEEEecCCCCCC-hhhHHHHHHHHHHhccCCc-EEEEee
Q 030881            4 QFIQNPESIFDLSVK---DA----RGHEVDLSTY-KGK-VLLIVNVASKCGMT-NSNYIELSQLYDKYKDQGL-EILAFP   72 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~---~~----~g~~~~l~~~-~gk-~~lv~f~~~~C~~C-~~~~~~l~~~~~~~~~~~v-~~v~is   72 (170)
                      .....|+.+|+-++.   +.    .+.+++++++ +|| .+|+=.-+.+.|.| ....|.+-+..++++.+|+ +++-+|
T Consensus         7 a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS   86 (171)
T KOG0541|consen    7 APIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS   86 (171)
T ss_pred             ccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence            457789999993332   21    1227888886 784 55555557889985 5679999999999999996 455556


Q ss_pred             cCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           73 CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        73 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +|        ++-.+..|.+ .++.+-.+-...|.++.....+ +.... ..+. +.++..- ++-++=.||++.+....
T Consensus        87 Vn--------DpFv~~aW~k-~~g~~~~V~f~aD~~g~ftk~l-gleld-~~d~-~~g~RS~-R~a~vvengkV~~~nvE  153 (171)
T KOG0541|consen   87 VN--------DPFVMKAWAK-SLGANDHVKFVADPAGEFTKSL-GLELD-LSDK-LLGVRSR-RYALVVENGKVTVVNVE  153 (171)
T ss_pred             cC--------cHHHHHHHHh-hcCccceEEEEecCCCceeeec-cceee-eccc-cCccccc-cEEEEEeCCeEEEEEec
Confidence            65        5677777776 5555433322255555433211 11110 0000 0011111 44455568999888544

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.06  E-value=0.0021  Score=39.33  Aligned_cols=38  Identities=5%  Similarity=0.055  Sum_probs=31.1

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      -|..|..+||++|......|+++..++  .++.+..++++
T Consensus         2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~   39 (85)
T PRK11200          2 FVVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIH   39 (85)
T ss_pred             EEEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECC
Confidence            367788899999999999999999876  35777777765

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.0037  Score=49.25  Aligned_cols=42  Identities=19%  Similarity=0.166  Sum_probs=36.3

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeec
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPC   73 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~   73 (170)
                      ...+++.|+++||++|+...|.+.++...++. .++.+..++.
T Consensus       162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~  204 (383)
T KOG0191|consen  162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA  204 (383)
T ss_pred             CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence            46889999999999999999999999999874 5688888764

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.04  E-value=0.001  Score=43.48  Aligned_cols=43  Identities=14%  Similarity=0.200  Sum_probs=32.8

Q ss_pred             CCcEEEEEEec-------CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|++++|.|.+       +|||.|....|.+++......+ +..+|.+.+.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG   67 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG   67 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence            56788888884       4999999999999998888443 5888888763

; PDB: 1V9W_A 1WOU_A.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.03  E-value=0.006  Score=36.56  Aligned_cols=23  Identities=9%  Similarity=0.081  Sum_probs=19.7

Q ss_pred             ecCCCCCChhhHHHHHHHHHHhc
Q 030881           40 VASKCGMTNSNYIELSQLYDKYK   62 (170)
Q Consensus        40 ~~~~C~~C~~~~~~l~~~~~~~~   62 (170)
                      .+++|+.|......++++...+.
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~   28 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG   28 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC
Confidence            56779999999999999988873

...

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.02  E-value=0.003  Score=45.22  Aligned_cols=81  Identities=11%  Similarity=0.211  Sum_probs=61.1

Q ss_pred             eeCCCCCeecCCCC-CCc--EEEEEEe-cC----CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881           17 VKDARGHEVDLSTY-KGK--VLLIVNV-AS----KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus        17 l~~~~g~~~~l~~~-~gk--~~lv~f~-~~----~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      +.+.+| +.+|.++ .||  .+|..|. ++    -|+.|...+..+.-....++.+++.+++||-.        ..+++.
T Consensus        57 Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~~l~  127 (247)
T COG4312          57 FETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLEELV  127 (247)
T ss_pred             eecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHHHHH
Confidence            334455 5778885 564  4554453 33    49999999999999899998889999999854        567888


Q ss_pred             HHHHhhcCCCCCceEEeec
Q 030881           89 DFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~  107 (170)
                      .+.+ ++|-.||+++..+.
T Consensus       128 ~~k~-rmGW~f~w~Ss~~s  145 (247)
T COG4312         128 AYKR-RMGWQFPWVSSTDS  145 (247)
T ss_pred             HHHH-hcCCcceeEeccCc
Confidence            8876 88999999965543

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.02  E-value=0.0084  Score=44.53  Aligned_cols=30  Identities=10%  Similarity=0.180  Sum_probs=26.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHH
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDK   60 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~   60 (170)
                      .++.+|+.|....||+|++...++..+.+.
T Consensus       116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~  145 (251)
T PRK11657        116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS  145 (251)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence            568999999999999999999998887654

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.97  E-value=0.007  Score=44.43  Aligned_cols=40  Identities=13%  Similarity=0.217  Sum_probs=31.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|+.+|+.|....||+|++..+++.++.+    .++.+..+.+.
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~~~P  145 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYLAFP  145 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEEecc
Confidence            57899999999999999999988887644    45666655443

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=96.89  E-value=0.015  Score=37.65  Aligned_cols=88  Identities=22%  Similarity=0.266  Sum_probs=56.1

Q ss_pred             HHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhH------------------
Q 030881           54 LSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPL------------------  115 (170)
Q Consensus        54 l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~------------------  115 (170)
                      |.+...++++.|+.++.|.+.        +.+.+++|++ ..+.++|++  .|++......+                  
T Consensus         2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~~-~~~~p~~ly--~D~~~~lY~~lg~~~~~~~~~~~~~~~~~   70 (115)
T PF13911_consen    2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFCE-LTGFPFPLY--VDPERKLYKALGLKRGLKWSLLPPALWSG   70 (115)
T ss_pred             hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHHh-ccCCCCcEE--EeCcHHHHHHhCCccccccCCCchHHHHH
Confidence            566778888899999999975        6666999996 678889977  55543211100                  


Q ss_pred             ----HHHhHh-ccCCcc-CCccccCceeEEECCCCcEEEEeCC
Q 030881          116 ----YKLLKS-GKWGIF-GDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus       116 ----~~~~~~-~~~~~~-~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                          ..-... ..++.. ...+.-...+||+|++|+|++.|..
T Consensus        71 ~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr~  113 (115)
T PF13911_consen   71 LSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHRD  113 (115)
T ss_pred             HHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEec
Confidence                000111 122222 2333334478999999999998753

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.70  E-value=0.008  Score=34.99  Aligned_cols=32  Identities=13%  Similarity=0.244  Sum_probs=23.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|..+||++|......+.+       .++.+..++++
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~   33 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD   33 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence            567788999999987666554       45677777665

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.67  E-value=0.0035  Score=42.32  Aligned_cols=41  Identities=20%  Similarity=0.299  Sum_probs=33.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .++++|+.|+..+||+|....+.+.++..++.+  +.++..++
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEEeC
Confidence            468999999999999999999999998887754  55554444

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.007  Score=39.24  Aligned_cols=47  Identities=11%  Similarity=0.182  Sum_probs=35.9

Q ss_pred             CCCC-CCcEEEEEEec--------CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           27 LSTY-KGKVLLIVNVA--------SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        27 l~~~-~gk~~lv~f~~--------~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++. +|+.+++.|.+        +|||.|.+..|-+.+..+... .++.||-+-+.
T Consensus        19 ~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap-~~~~~v~v~VG   74 (128)
T KOG3425|consen   19 LKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP-EDVHFVHVYVG   74 (128)
T ss_pred             HHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC-CceEEEEEEec
Confidence            3444 67778888875        499999999999998888544 34888888663

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.38  E-value=0.019  Score=33.94  Aligned_cols=32  Identities=9%  Similarity=0.210  Sum_probs=24.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|..++||+|......|++       +|+.+-.++++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~   33 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD   33 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC
Confidence            456778999999998877764       45777777765

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=96.37  E-value=0.01  Score=33.62  Aligned_cols=32  Identities=13%  Similarity=0.237  Sum_probs=24.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..++||+|......|       ++.|+.+-.++++
T Consensus         1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~   32 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD   32 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred             cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence            4678889999999887766       3356777777775

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.36  E-value=0.011  Score=35.66  Aligned_cols=34  Identities=18%  Similarity=0.154  Sum_probs=25.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..+|||+|......|+++...     ..++-++.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~~-----~~~~~v~~~   35 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGVK-----PAVVELDQH   35 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCCC-----cEEEEEeCC
Confidence            4667789999999999888876552     556666554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.30  E-value=0.02  Score=34.52  Aligned_cols=38  Identities=13%  Similarity=0.253  Sum_probs=28.2

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+.+.-|+.|..+||++|......|.+       .|+.+..++++
T Consensus         4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~   41 (79)
T TIGR02190         4 ARKPESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG   41 (79)
T ss_pred             cCCCCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence            445556778889999999998877753       46777777765

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.30  E-value=0.039  Score=46.05  Aligned_cols=22  Identities=18%  Similarity=0.116  Sum_probs=20.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHH
Q 030881           31 KGKVLLIVNVASKCGMTNSNYI   52 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~   52 (170)
                      .+|||+|...++||..|+.+..
T Consensus        42 edkPIflSIGys~CHWChVM~~   63 (667)
T COG1331          42 EDKPILLSIGYSTCHWCHVMAH   63 (667)
T ss_pred             hCCCEEEEeccccccchHHHhh
Confidence            6899999999999999998763

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=96.15  E-value=0.018  Score=34.54  Aligned_cols=32  Identities=13%  Similarity=0.236  Sum_probs=22.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|+.+|||+|......|++       +|+.+-.++++
T Consensus         1 v~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~   32 (79)
T TIGR02181         1 VTIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVD   32 (79)
T ss_pred             CEEEecCCChhHHHHHHHHHH-------cCCCcEEEEec
Confidence            356778999999998877764       34555556554

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.14  E-value=0.021  Score=35.07  Aligned_cols=37  Identities=8%  Similarity=0.004  Sum_probs=27.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..+|||+|......|.++..++.  ++.+..++++
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~   38 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH   38 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence            456678999999999988888765543  3666666654

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>KOG3414 consensus Component of the U4/U6

Probab=96.08  E-value=0.18  Score=33.18  Aligned_cols=57  Identities=16%  Similarity=0.083  Sum_probs=42.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP  100 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p  100 (170)
                      ..|.+|+-|.-.|-|.|+.+-..|.++.+...+- .++.-+..           .+...|.+ -++++.|
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdi-----------deV~~~~~-~~~l~~p   78 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDI-----------DEVPDFVK-MYELYDP   78 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEec-----------chhhhhhh-hhcccCC
Confidence            4589999999999999999999999999998652 33444433           35666665 5566554

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=96.03  E-value=0.014  Score=39.80  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=39.0

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecC
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCN   74 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d   74 (170)
                      ..+.+-.++++|+.|+...||+|....+.+.++.+++-+. .+.++..++.
T Consensus         5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~   55 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP   55 (162)
T ss_dssp             EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred             CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence            4455666799999999999999999999999999998322 3888877763

...

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=95.93  E-value=0.071  Score=39.96  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=35.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++-+|||+||-+.++.|......|..|+.+|..  ++|+.|...
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~  186 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRAS  186 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehh
Confidence            456999999999999999999999999999987  999999753

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.87  E-value=0.033  Score=32.11  Aligned_cols=32  Identities=19%  Similarity=0.143  Sum_probs=23.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..+|||+|......|.+..       +.+..++++
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~   33 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDIL   33 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECC
Confidence            45677899999999887776543       556666654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.69  E-value=0.11  Score=42.97  Aligned_cols=40  Identities=10%  Similarity=0.154  Sum_probs=30.8

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      ++..+-.|.+++||+|+.....++++..+..+  +..-.|..
T Consensus       476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~--i~~~~i~~  515 (555)
T TIGR03143       476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPN--VEAEMIDV  515 (555)
T ss_pred             CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCC--ceEEEEEC
Confidence            44556666799999999999999999998763  66666654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=95.55  E-value=0.084  Score=31.08  Aligned_cols=32  Identities=13%  Similarity=0.223  Sum_probs=23.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..++|+.|.+....|++       +|+.+-.++++
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~   34 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID   34 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence            345667999999998877664       56777777765

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.33  E-value=0.038  Score=38.30  Aligned_cols=42  Identities=17%  Similarity=0.123  Sum_probs=34.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .+++.|+.|+...||+|....+.+.++..++++ ++.+.-+.+
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~~   55 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVPV   55 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcCC
Confidence            579999999999999999999999999999854 366655543

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=95.32  E-value=0.085  Score=31.93  Aligned_cols=44  Identities=9%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      +..|.-++||+|......|.       .+|+.+.-|.++.      +..++..++++
T Consensus         3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~~   46 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMVK   46 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHHH
Confidence            44556688999998876666       4677777777652      23345556665

>PHA03050 glutaredoxin; Provisional

Probab=95.20  E-value=0.049  Score=35.07  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=18.4

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHH
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLY   58 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~   58 (170)
                      -|+.|..+|||+|......|.+.-
T Consensus        14 ~V~vys~~~CPyC~~ak~~L~~~~   37 (108)
T PHA03050         14 KVTIFVKFTCPFCRNALDILNKFS   37 (108)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcC
Confidence            366788899999998877665543

>PRK10329 glutaredoxin-like protein; Provisional

Probab=95.17  E-value=0.091  Score=31.87  Aligned_cols=32  Identities=6%  Similarity=0.270  Sum_probs=24.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|..+||++|......|.       ++|+.+-.++++
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~   34 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD   34 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence            45667899999998776663       367888888775

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=95.13  E-value=0.21  Score=33.26  Aligned_cols=92  Identities=10%  Similarity=-0.024  Sum_probs=59.8

Q ss_pred             cEEEEEEecC--CCCC-Ch-hhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           33 KVLLIVNVAS--KCGM-TN-SNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        33 k~~lv~f~~~--~C~~-C~-~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      ++=+|-|...  .|.. +. .....+.+++++|+++.+.++.++.+.        ...   +.+ .+++.=         
T Consensus        21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~---~~~-~fgl~~---------   79 (130)
T cd02983          21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLD---LEE-ALNIGG---------   79 (130)
T ss_pred             CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHH---HHH-HcCCCc---------
Confidence            4445555432  2432 33 346788899999998889999998752        122   332 333310         


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhcC
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          ...|   ++++++.++. .|. +.+..+.+.+.+.++..+.+
T Consensus        80 --------------------~~~P---~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~G  117 (130)
T cd02983          80 --------------------FGYP---AMVAINFRKM-KFATLKGSFSEDGINEFLRELSYG  117 (130)
T ss_pred             --------------------cCCC---EEEEEecccC-ccccccCccCHHHHHHHHHHHHcC
Confidence                                1122   7788888776 666 77888999999999998864

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=94.88  E-value=0.18  Score=31.72  Aligned_cols=37  Identities=14%  Similarity=0.210  Sum_probs=24.3

Q ss_pred             CCcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.+.++|+-.+    +|||+|......|.+       .|+.+..++++
T Consensus        10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~   50 (97)
T TIGR00365        10 KENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL   50 (97)
T ss_pred             ccCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence            34566666543    799999988766655       34666666654

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.65  E-value=0.35  Score=39.79  Aligned_cols=41  Identities=10%  Similarity=0.034  Sum_probs=32.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .+..-+..|....||+|+.....++++..+.+.  +..-.|..
T Consensus       115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~--i~~~~id~  155 (517)
T PRK15317        115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNPN--ITHTMIDG  155 (517)
T ss_pred             CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCC--ceEEEEEc
Confidence            455668888899999999999999999887653  77666643

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=94.63  E-value=0.1  Score=32.98  Aligned_cols=32  Identities=16%  Similarity=0.169  Sum_probs=21.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..+|||+|.+....|.+       .|+.+-.+.+|
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~-------~~i~~~~vdid   41 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT-------LGVNPAVHEID   41 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence            556777999999987765543       34545555554

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=94.60  E-value=0.12  Score=30.28  Aligned_cols=32  Identities=13%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..+|||+|.+....|++       .|+.+..++++
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~   34 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG   34 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence            456677999999998766653       45667677665

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=94.40  E-value=0.13  Score=30.21  Aligned_cols=31  Identities=13%  Similarity=0.217  Sum_probs=23.4

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..|..++||+|......|++       +|+.+-.++++
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~   32 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID   32 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence            45667999999998877753       56777777765

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.30  E-value=0.028  Score=40.58  Aligned_cols=43  Identities=16%  Similarity=0.208  Sum_probs=37.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~   75 (170)
                      +++.++++||+.||.+|......+..+.+.+  .+++++.+..+.
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~   58 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE   58 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence            7899999999999999999888888888887  458888887653

>PRK10638 glutaredoxin 3; Provisional

Probab=94.27  E-value=0.23  Score=30.00  Aligned_cols=32  Identities=13%  Similarity=0.334  Sum_probs=22.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|..+|||+|......|.+       +|+.+..++++
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~   35 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID   35 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            445667999999988876664       45666666665

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.22  E-value=0.26  Score=35.03  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=23.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHH
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQ   56 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~   56 (170)
                      .++..|+.|....||+|++..+.+.+
T Consensus        76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          76 NGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             CCCEEEEEEECCCCccHHHHHHHHhh
Confidence            46899999999999999999998877

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=94.11  E-value=0.28  Score=30.30  Aligned_cols=37  Identities=22%  Similarity=0.392  Sum_probs=23.5

Q ss_pred             CCcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++++++|+--+    +|||+|......|.+.       |+.+-.++++
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~   46 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL   46 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence            45566665443    5999999877665543       4566666654

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.94  E-value=0.05  Score=39.23  Aligned_cols=45  Identities=18%  Similarity=0.020  Sum_probs=41.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~   75 (170)
                      +.+++||.|++.|.+-|....|-+.++..+|...++++-.|++..
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGr  187 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGR  187 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeecc
Confidence            457999999999999999999999999999998889999998753

>KOG4498 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.63  E-value=0.12  Score=36.38  Aligned_cols=55  Identities=22%  Similarity=0.401  Sum_probs=45.5

Q ss_pred             eCCCCCeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881           18 KDARGHEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFP   72 (170)
Q Consensus        18 ~~~~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is   72 (170)
                      .+..|..+...++ +.+..+|.|. -.-|--|+++...|..+.+-++..|+..+.|-
T Consensus        35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg   91 (197)
T KOG4498|consen   35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG   91 (197)
T ss_pred             hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence            5778999999996 5555555555 68899999999999999888888999999986

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=93.37  E-value=0.12  Score=37.24  Aligned_cols=44  Identities=9%  Similarity=0.110  Sum_probs=34.3

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..|++.|+.|+.-.||+|....+.+   ..+.+.+.+ ++.++-+.+.
T Consensus        35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~~   81 (207)
T PRK10954         35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHVE   81 (207)
T ss_pred             CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEeccc
Confidence            3678999999999999999988765   677777754 4677766653

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=93.36  E-value=0.93  Score=37.30  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=31.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP   72 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is   72 (170)
                      .++.-+-.|....||+|+.....++++..+.+.  +..-.|.
T Consensus       116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~--i~~~~id  155 (515)
T TIGR03140       116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNPN--ISHTMID  155 (515)
T ss_pred             CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCC--ceEEEEE
Confidence            456678888899999999998899888888763  6655554

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK10824 glutaredoxin-4; Provisional

Probab=92.95  E-value=0.41  Score=31.15  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=18.8

Q ss_pred             CCcEEEEEEec----CCCCCChhhHHHHHHH
Q 030881           31 KGKVLLIVNVA----SKCGMTNSNYIELSQL   57 (170)
Q Consensus        31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~   57 (170)
                      ..+.|+|+--+    +|||+|.+...-|+++
T Consensus        13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~   43 (115)
T PRK10824         13 AENPILLYMKGSPKLPSCGFSAQAVQALSAC   43 (115)
T ss_pred             hcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence            34566666554    5999999988766654

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=92.87  E-value=0.16  Score=30.89  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=29.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|+...||+|....+.+.++.....+ ++.+.-..+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP   38 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence            4678889999999999999998855443 4777766654

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=92.06  E-value=1.6  Score=35.19  Aligned_cols=64  Identities=11%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..+-.+.+.-.+|+.+++.+++|..-+|...++- .+|...+...+.+.+++.++||.+|-+..+
T Consensus       274 e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~  337 (453)
T PLN03098        274 ETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG  337 (453)
T ss_pred             hhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence            3444455544467889999999976666655543 577888888899999999999999999876

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=91.60  E-value=0.91  Score=29.04  Aligned_cols=59  Identities=14%  Similarity=0.351  Sum_probs=37.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE   98 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..++++|+=-+|.||.+.....++++..+...+. +.+..+.+-        ....+-..++.++++.
T Consensus        18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~--------~~R~vSn~IAe~~~V~   76 (105)
T PF11009_consen   18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI--------EYRPVSNAIAEDFGVK   76 (105)
T ss_dssp             --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG--------GGHHHHHHHHHHHT--
T ss_pred             ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE--------eCchhHHHHHHHhCCC
Confidence            3678888888999999999999999999998765 777777763        3455555555465553

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=91.21  E-value=0.49  Score=30.73  Aligned_cols=50  Identities=12%  Similarity=0.225  Sum_probs=34.9

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881           38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF   99 (170)
Q Consensus        38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .|+.++|+.|+.....|.+       +|+.+..+++..    .+.+.+++.++++ ..+.++
T Consensus         3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~----~~~~~~el~~l~~-~~~~~~   52 (117)
T TIGR01617         3 VYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGE----DGPTREELLDILS-LLEDGI   52 (117)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------cCCceEEEecCC----ChhhHHHHHHHHH-HcCCCH
Confidence            4567999999998866655       456777776642    3457888888886 556443

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]

Probab=90.98  E-value=2.2  Score=33.99  Aligned_cols=37  Identities=14%  Similarity=0.079  Sum_probs=31.7

Q ss_pred             cccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       131 i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      ++..|+.|+|+..|+-+....|...+++|...|++..
T Consensus        75 ~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~  111 (506)
T KOG2507|consen   75 YVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW  111 (506)
T ss_pred             cccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence            4445699999999999999999999999998887764

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.81  E-value=0.34  Score=28.79  Aligned_cols=42  Identities=12%  Similarity=0.118  Sum_probs=29.2

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      .-|++..||.|......+.++.-.     ..+|-|.         .+-..+++|..
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~v~-----yd~VeIt---------~Sm~NlKrFl~   46 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLNVD-----YDFVEIT---------ESMANLKRFLH   46 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcCCC-----ceeeehh---------hhhhhHHHHHh
Confidence            457889999999888777665433     4455553         25678888885

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=90.64  E-value=1.9  Score=29.42  Aligned_cols=142  Identities=17%  Similarity=0.231  Sum_probs=75.4

Q ss_pred             ccCCcccccceeeCC-----CCCeecC-----CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHH-hccCCcEEEE-eec
Q 030881            6 IQNPESIFDLSVKDA-----RGHEVDL-----STYKGKVLLIVNVASKCGMTNSNYIELSQLYDK-YKDQGLEILA-FPC   73 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~-----~g~~~~l-----~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~-~~~~~v~~v~-is~   73 (170)
                      +..|.++|+..+.+.     +|+.++.     +++-||+-++.-.|-....=....+-+..+... |+....+--. |+.
T Consensus        23 lq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIiN~  102 (184)
T COG3054          23 LQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTIINT  102 (184)
T ss_pred             cccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEecc
Confidence            456788888876543     4444443     445799988888876554433444445444332 2211233222 233


Q ss_pred             CCCCCCCCCChHHHHHHHHhhcCCCCCceE-EeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           74 NQFGEEEPGSNDQIADFVCTRFKSEFPIFE-KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      |+   .-+.+..=.+.-++ ...--||+-- ..|..+ .+...|+... ...           .++++|++|++.+...|
T Consensus       103 DD---Ai~GtgmFVkssae-~~Kke~pwSq~vlD~~g-vak~AWqL~e-~~S-----------aivVlDk~G~VkfvkeG  165 (184)
T COG3054         103 DD---AIPGTGMFVKSSAE-SNKKEYPWSQFVLDSNG-VAKNAWQLKE-ESS-----------AVVVLDKDGRVKFVKEG  165 (184)
T ss_pred             CC---ccccccceeecchh-hccccCCceeeEEccch-hhhhhhcccc-ccc-----------eEEEEcCCCcEEEEecC
Confidence            32   01122222222222 2233345411 145555 4444554321 122           77999999999999999


Q ss_pred             CCCchHHHHHHH
Q 030881          153 TTSLLSLEHDIK  164 (170)
Q Consensus       153 ~~~~~~l~~~l~  164 (170)
                      ..+..++.+.|.
T Consensus       166 aLt~aevQ~Vi~  177 (184)
T COG3054         166 ALTQAEVQQVID  177 (184)
T ss_pred             CccHHHHHHHHH
Confidence            988887766654

>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=90.53  E-value=0.9  Score=33.32  Aligned_cols=55  Identities=20%  Similarity=0.272  Sum_probs=39.8

Q ss_pred             CCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           19 DARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        19 ~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      ..++...-..+..++++++.|....||+|.+..+.+.+.+....+..+.+.-+.+
T Consensus        71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~f  125 (244)
T COG1651          71 TPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFPF  125 (244)
T ss_pred             cCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEeec
Confidence            3455555556666699999999999999999999999977777665444444333

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=89.65  E-value=1.1  Score=28.53  Aligned_cols=45  Identities=11%  Similarity=0.155  Sum_probs=25.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      +|.|.-+||++|...-.-|++    +. -...++-+.-+       ....++.++..
T Consensus        16 VVifSKs~C~~c~~~k~ll~~----~~-v~~~vvELD~~-------~~g~eiq~~l~   60 (104)
T KOG1752|consen   16 VVIFSKSSCPYCHRAKELLSD----LG-VNPKVVELDED-------EDGSEIQKALK   60 (104)
T ss_pred             EEEEECCcCchHHHHHHHHHh----CC-CCCEEEEccCC-------CCcHHHHHHHH
Confidence            455677999999984444443    22 12445554322       23446666665

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=89.48  E-value=0.84  Score=29.36  Aligned_cols=48  Identities=17%  Similarity=0.260  Sum_probs=32.2

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881           38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS   97 (170)
Q Consensus        38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~   97 (170)
                      .|..++|+.|++...-|++       +|+.+-.+++..    .+.+.+++.++.+ ..+.
T Consensus         3 iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~----~~~~~~el~~~~~-~~~~   50 (111)
T cd03036           3 FYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVE----EPPSKEELKKWLE-KSGL   50 (111)
T ss_pred             EEECCCCHHHHHHHHHHHH-------cCCceEEecccC----CcccHHHHHHHHH-HcCC
Confidence            4557899999988755544       456666666542    3457788888876 4443

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=89.20  E-value=1  Score=28.54  Aligned_cols=48  Identities=13%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      ..|..++|+.|++....|++       +|+.+-.+++..    .+.+.+++.++.. ..+
T Consensus         2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~----~~~~~~~l~~~~~-~~~   49 (105)
T cd02977           2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLK----EPPTKEELKELLA-KLG   49 (105)
T ss_pred             EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeecc----CCCCHHHHHHHHH-hcC
Confidence            35667999999998755544       455555555531    3457788888876 444

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=89.10  E-value=3.8  Score=28.23  Aligned_cols=39  Identities=18%  Similarity=0.245  Sum_probs=24.4

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++.|..............++.+..+++++ +.++.+..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~~  136 (184)
T PF13848_consen   98 VLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDAD  136 (184)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEETT
T ss_pred             EEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeehH
Confidence            555555444444556666777777777655 777777653

...

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=88.94  E-value=4.3  Score=33.79  Aligned_cols=42  Identities=12%  Similarity=0.092  Sum_probs=27.8

Q ss_pred             CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEe
Q 030881           28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF   71 (170)
Q Consensus        28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~i   71 (170)
                      +++++.+.|+.|+...|..|.+....|+++.. +.++ +.+...
T Consensus       362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~-i~~~~~  403 (555)
T TIGR03143       362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK-LNSEAV  403 (555)
T ss_pred             HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc-EEEEEe
Confidence            44677778888888888888777666666663 3333 555444

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=88.69  E-value=0.12  Score=37.74  Aligned_cols=40  Identities=15%  Similarity=0.087  Sum_probs=32.5

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP   72 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is   72 (170)
                      .-.++.|.++|||-|.--.+.+.++..--.+.++.+--|.
T Consensus        40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VD   79 (248)
T KOG0913|consen   40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVD   79 (248)
T ss_pred             hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEE
Confidence            4567889999999999999999999887777776655553

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=88.41  E-value=0.82  Score=30.43  Aligned_cols=50  Identities=10%  Similarity=0.101  Sum_probs=32.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE   98 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ..|..++|+.|++...-|       .++|+.+-.+++..    .+.+.+++.++++ ..+.+
T Consensus         3 ~iY~~~~C~~C~ka~~~L-------~~~gi~~~~idi~~----~~~~~~eL~~~l~-~~~~g   52 (131)
T PRK01655          3 TLFTSPSCTSCRKAKAWL-------EEHDIPFTERNIFS----SPLTIDEIKQILR-MTEDG   52 (131)
T ss_pred             EEEeCCCChHHHHHHHHH-------HHcCCCcEEeeccC----ChhhHHHHHHHHH-HhcCC
Confidence            345579999999976443       33466666666532    3457788888886 54433

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=88.36  E-value=1.6  Score=28.25  Aligned_cols=49  Identities=6%  Similarity=0.136  Sum_probs=33.1

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881           38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE   98 (170)
Q Consensus        38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
                      .|..++|+.|++....|++       +|+.+-.+++..    .+.+.+++.++++ ..+.+
T Consensus         4 iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~~----~~~~~~el~~~~~-~~~~~   52 (115)
T cd03032           4 LYTSPSCSSCRKAKQWLEE-------HQIPFEERNLFK----QPLTKEELKEILS-LTENG   52 (115)
T ss_pred             EEeCCCCHHHHHHHHHHHH-------CCCceEEEecCC----CcchHHHHHHHHH-HhcCC
Confidence            4557899999998765554       456666666532    3457888998887 54443

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=87.80  E-value=2.5  Score=28.15  Aligned_cols=43  Identities=14%  Similarity=-0.006  Sum_probs=34.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..|.+++-|...|-+.|+.+-..|.++.++.++- ..+..+..+
T Consensus        19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~   61 (133)
T PF02966_consen   19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDID   61 (133)
T ss_dssp             SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred             CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcc
Confidence            4699999999999999999999999999988663 556666554

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function

Probab=87.68  E-value=1.3  Score=32.91  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=27.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD   63 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~   63 (170)
                      .||+.+++..+.|||+|..+.=.|-....+|..
T Consensus        57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn   89 (249)
T PF06053_consen   57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFGN   89 (249)
T ss_pred             CCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence            689999999999999999987666666666654

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=87.38  E-value=1.4  Score=28.12  Aligned_cols=48  Identities=6%  Similarity=0.119  Sum_probs=32.5

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      ..|..++|+.|++...-|.+       +|+.+-.+++..    .+-+.+++.++++ ..+
T Consensus         2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~----~p~s~~eL~~~l~-~~g   49 (105)
T cd03035           2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRK----DGLDAATLERWLA-KVG   49 (105)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEeccc----CCCCHHHHHHHHH-HhC
Confidence            35667999999998755443       455555555431    3568999999987 555

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>PTZ00062 glutaredoxin; Provisional

Probab=87.20  E-value=2.5  Score=30.49  Aligned_cols=37  Identities=14%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.++++|+--+    ++|++|++....|++       .++.+..++++
T Consensus       111 ~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~  151 (204)
T PTZ00062        111 RNHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF  151 (204)
T ss_pred             hcCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence            44566666654    578888876655553       45777777665

>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=86.01  E-value=6.2  Score=25.32  Aligned_cols=77  Identities=9%  Similarity=-0.071  Sum_probs=47.3

Q ss_pred             hhhHHHHHHHHHH---hccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccC
Q 030881           48 NSNYIELSQLYDK---YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW  124 (170)
Q Consensus        48 ~~~~~~l~~~~~~---~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~  124 (170)
                      ......+..+.++   ++++ +.++.++.+.+        ....+    .+|++-                         
T Consensus        30 ~~~~~~~~~vAk~~~~~kgk-i~Fv~~d~~~~--------~~~~~----~fgl~~-------------------------   71 (111)
T cd03072          30 ESLKEFKQAVARQLISEKGA-INFLTADGDKF--------RHPLL----HLGKTP-------------------------   71 (111)
T ss_pred             HHHHHHHHHHHHHHHhcCce-EEEEEEechHh--------hhHHH----HcCCCH-------------------------
Confidence            4456777888888   8877 88999877531        22222    333320                         


Q ss_pred             CccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhcC
Q 030881          125 GIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       125 ~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~~  169 (170)
                          ...|   .+.+++-++.-.+. ..+..+++.+.+.++..+.+
T Consensus        72 ----~~~P---~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G  110 (111)
T cd03072          72 ----ADLP---VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG  110 (111)
T ss_pred             ----hHCC---EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence                0111   55666655533444 44567888899999988765

It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.

>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]

Probab=84.87  E-value=1.9  Score=31.64  Aligned_cols=29  Identities=21%  Similarity=0.265  Sum_probs=25.2

Q ss_pred             eeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881          136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus       136 ~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      .+|+||..|+|++...|..+++++++.+.
T Consensus       250 yV~L~D~s~kIRW~g~G~aTp~Eve~L~~  278 (287)
T KOG4614|consen  250 YVLLLDKSGKIRWQGFGTATPEEVEQLLS  278 (287)
T ss_pred             EEEEEccCceEEEeecCCCCHHHHHHHHH
Confidence            66999999999999999999998776653

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=84.21  E-value=2.6  Score=28.05  Aligned_cols=50  Identities=12%  Similarity=0.171  Sum_probs=33.3

Q ss_pred             EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881           38 VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF   99 (170)
Q Consensus        38 ~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      .|..++|+.|++...-       +.++|+.+-.+++..    .+-+.+++.++++ ..+.++
T Consensus         4 iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~----~~~s~~eL~~~l~-~~~~~~   53 (132)
T PRK13344          4 IYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGK----EPLTKEEILAILT-KTENGI   53 (132)
T ss_pred             EEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCC----CCCCHHHHHHHHH-HhCCCH
Confidence            4556899999986633       334566666666542    3568889999987 555443

>PRK12559 transcriptional regulator Spx; Provisional

Probab=83.61  E-value=3.1  Score=27.68  Aligned_cols=46  Identities=7%  Similarity=0.146  Sum_probs=31.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      +..|..++|+.|++...-|.       ++|+.+-.+++..    .+.+.+++.++++
T Consensus         2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~----~~~s~~el~~~l~   47 (131)
T PRK12559          2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVS----NSMTVDELKSILR   47 (131)
T ss_pred             EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeC----CcCCHHHHHHHHH
Confidence            34556799999999774433       3456666665532    3568899999987

>PHA03075 glutaredoxin-like protein; Provisional

Probab=83.23  E-value=1  Score=29.16  Aligned_cols=30  Identities=30%  Similarity=0.351  Sum_probs=26.5

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhc
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYK   62 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~   62 (170)
                      |.+++-|.-+.|+.|......+.++.++|.
T Consensus         2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~   31 (123)
T PHA03075          2 KKTLILFGKPLCSVCESISEALKELEDEYD   31 (123)
T ss_pred             CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence            568899999999999999999988888875

>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products

Probab=81.83  E-value=9  Score=26.65  Aligned_cols=71  Identities=14%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             ccccCCcccccceeeC-CCCCeecCCCC---CCcEEEEEEecCC-CCCChhhHHHHHHHHH-------HhccC------C
Q 030881            4 QFIQNPESIFDLSVKD-ARGHEVDLSTY---KGKVLLIVNVASK-CGMTNSNYIELSQLYD-------KYKDQ------G   65 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~-~~g~~~~l~~~---~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~-------~~~~~------~   65 (170)
                      ..+.+|.++|+..+.. .||+++.|.+.   .|++-|+.|-+.. .+.+...+..+.+..+       +|...      -
T Consensus        28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~  107 (169)
T PF07976_consen   28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV  107 (169)
T ss_dssp             TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred             cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence            3467999999999987 58999999984   7999999999754 4555555555555443       44332      2


Q ss_pred             cEEEEeecC
Q 030881           66 LEILAFPCN   74 (170)
Q Consensus        66 v~~v~is~d   74 (170)
                      +.++.|...
T Consensus       108 ~~~~~I~~~  116 (169)
T PF07976_consen  108 FDVLLIHSS  116 (169)
T ss_dssp             EEEEEEESS
T ss_pred             eEEEEEecC
Confidence            778888753

The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.

>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane

Probab=81.05  E-value=22  Score=26.95  Aligned_cols=60  Identities=15%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             CcccccceeeCCCCCeecCCCCC--CcEEEEEEecCCCCCChhhH-HHHHHHHHHhc--cCCcEEEEeecC
Q 030881            9 PESIFDLSVKDARGHEVDLSTYK--GKVLLIVNVASKCGMTNSNY-IELSQLYDKYK--DQGLEILAFPCN   74 (170)
Q Consensus         9 g~~~p~f~l~~~~g~~~~l~~~~--gk~~lv~f~~~~C~~C~~~~-~~l~~~~~~~~--~~~v~~v~is~d   74 (170)
                      -..+|-|++.|.+|.++-...-.  ++.+...|.      |.... ..++++.....  ..+++|+.++++
T Consensus        72 L~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~  136 (274)
T PF04278_consen   72 LAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG  136 (274)
T ss_dssp             HTTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred             hcCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence            45789999999999998666654  566665555      34444 34455555543  456999999875

This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=80.26  E-value=2.5  Score=25.37  Aligned_cols=52  Identities=10%  Similarity=0.254  Sum_probs=35.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF  102 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~  102 (170)
                      |+.|....|+-|-.....+.++..+   .++.+-.|+++        +.++   +.. +|+..-|++
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~--------~d~~---l~~-~Y~~~IPVl   53 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID--------EDPE---LFE-KYGYRIPVL   53 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT--------TTHH---HHH-HSCTSTSEE
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC--------CCHH---HHH-HhcCCCCEE
Confidence            5666778999999988888876555   34778888775        2223   332 777777776

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	170
2p5q_A	170	Crystal Structure Of The Poplar Glutathione Peroxid		5e-80
2vup_A	190	Crystal Structure Of A Type Ii Tryparedoxin-Dependa		4e-42
3dwv_A	187	Glutathione Peroxidase-Type Tryparedoxin Peroxidase		4e-42
3e0u_A	166	Crystal Structure Of T. Cruzi Gpx1 Length = 166		6e-42
2rm5_A	167	Glutathione Peroxidase-Type Tryparedoxin Peroxidase		7e-42
2wgr_A	169	Combining Crystallography And Molecular Dynamics: T		2e-39
2v1m_A	169	Crystal Structure Of Schistosoma Mansoni Glutathion		2e-39
2obi_A	183	Crystal Structure Of The Selenocysteine To Cysteine		1e-38
3cmi_A	171	Crystal Structure Of Glutathione-Dependent Phosphol		2e-38
2gs3_A	185	Crystal Structure Of The Selenocysteine To Glycine		2e-37
3kij_A	180	Crystal Structure Of The Human Pdi-Peroxidase Lengt		3e-29
2p31_A	181	Crystal Structure Of Human Glutathione Peroxidase 7		3e-29
3cyn_A	189	The Structure Of Human Gpx8 Length = 189		3e-29
1gp1_A	198	The Refined Structure Of The Selenoenzyme Glutathio		7e-24
2f8a_A	208	Crystal Structure Of The Selenocysteine To Glycine		1e-23
2he3_A	208	Crystal Structure Of The Selenocysteine To Cysteine		2e-22
2i3y_A	215	Crystal Structure Of Human Glutathione Peroxidase 5		2e-20
2r37_A	207	Crystal Structure Of Human Glutathione Peroxidase 3		6e-20
2lrt_A	152	Solution Structure Of The Uncharacterized Thioredox		4e-06

>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5 In The Reduced Form Length = 170

Iteration: 1
 Score =  292 bits (748), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 137/170 (80%), Positives = 156/170 (91%)
Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q  +NPES+ D +VKDA+ ++VDLS +KGKVLLIVNVASKCGMTNSNY E++QLY+K
Sbjct: 1   MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60
Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFGEEEPG+NDQI DFVCTRFKSEFPIF+KIDVNGE+ASPLY+ LK
Sbjct: 61  YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
            GKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLE DIK+LL +S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS 170

>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant Peroxidase From Trypanosoma Brucei Length = 190

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/158 (51%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SIFD  V DA     +L  +KG  LLI NVASKCG T   Y   + LY+KYK QG  +LA
Sbjct: 27  SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 86
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FPCNQFG +EPG+ ++I +FVCT+FK+EFPI  KI+VNGE+A PLY+ +K  K GI    
Sbjct: 87  FPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTK 146
Query: 131 -IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            I+WNF  FL+D++G  V+R+ P  S+  +E  +  LL
Sbjct: 147 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLL 184

>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 187

Iteration: 1
 Score =  167 bits (422), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SIFD  V DA     +L  +KG  LLI NVASKCG T   Y   + LY+KYK QG  +LA
Sbjct: 25  SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 84
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FP NQFG +EPG+ ++I +FVCT+FK+EFPI  KI+VNGE+A PLY+ +K  K GI    
Sbjct: 85  FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 144
Query: 131 -IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
            I+WNF  FL+D++G  V+R+ P  S+  +E  +  LLG
Sbjct: 145 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG 183

>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1 Length = 166

Iteration: 1
 Score =  166 bits (420), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 106/160 (66%), Gaps = 1/160 (0%)
Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
           +SI++  V  A G   DLS +KG  LLI NVAS+CG T   Y   + LY+KYK QG  +L
Sbjct: 3   KSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFTVL 62
Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
           AFPCNQF  +EPG+  ++ +F CTRFK++FPI  KIDVNG  A PLY+ +K+   G+FG 
Sbjct: 63  AFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLFGT 122
Query: 130 D-IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
             I+WNF  FL+D++G  V+R+ P  S+  +E  +  LLG
Sbjct: 123 KAIKWNFTSFLIDRHGVPVERFSPGASVEDIEKKLLPLLG 162

>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase, Oxidized Form Length = 167

Iteration: 1
 Score =  166 bits (419), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 106/159 (66%), Gaps = 1/159 (0%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SIFD  V DA     +L  +KG  LLI NVASKCG T   Y   + LY+KYK QG  +LA
Sbjct: 5   SIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLA 64
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FP NQFG +EPG+ ++I +FVCT+FK+EFPI  KI+VNGE+A PLY+ +K  K GI    
Sbjct: 65  FPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATK 124
Query: 131 -IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
            I+WNF  FL+D++G  V+R+ P  S+  +E  +  LLG
Sbjct: 125 AIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG 163

>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case Of Schistosoma Mansoni Phospholipid Glutathione Peroxidase Length = 169

Iteration: 1
 Score =  158 bits (399), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 105/157 (66%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SI++ +VKD  G +V L  Y+G V LIVNVA K G T+ NY +L +++ +   +GL ILA
Sbjct: 10  SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FPCNQFG +EP +  +I  FV  ++  +F +F KI VNG  A  LYK LKS + G   ++
Sbjct: 70  FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           I+WNF+KFLVD+ GQ V RY PTT+   +E DI +LL
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione Peroxidase Length = 169

Iteration: 1
 Score =  157 bits (398), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/157 (49%), Positives = 105/157 (66%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SI++ +VKD  G +V L  Y+G V LIVNVA K G T+ NY +L +++ +   +GL ILA
Sbjct: 10  SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGKGLRILA 69
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FPCNQFG +EP +  +I  FV  ++  +F +F KI VNG  A  LYK LKS + G   ++
Sbjct: 70  FPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN 129
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           I+WNF+KFLVD+ GQ V RY PTT+   +E DI +LL
Sbjct: 130 IKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Phospholipid Hydroperoxide Glutathione Peroxidase (Gpx4) Length = 183

Iteration: 1
 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 78/157 (49%), Positives = 105/157 (66%), Gaps = 5/157 (3%)
Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
            S+ + S KD  GH V+L  Y+G V ++ NVAS+CG T  NY +L  L+ +Y + GL IL
Sbjct: 25  RSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRIL 84
Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK---SGKWGI 126
           AFPCNQFG++EPGSN++I +F    +  +F +F KI VNG+ A PL+K +K    GK GI
Sbjct: 85  AFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK-GI 142
Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163
            G+ I+WNF KFL+DKNG VV RY P    L +E D+
Sbjct: 143 LGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 179

>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae Length = 171

Iteration: 1
 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72
           + L+  D +G        KGKV+LIVNVASKCG T   Y EL  LY +YKD+G  I+ FP
Sbjct: 13  YKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGFP 71
Query: 73  CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-DDI 131
           CNQFG +EPGS+++IA F    +   FPI +KIDVNG +  P+YK LKS K G+ G   I
Sbjct: 72  CNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGI 131
Query: 132 QWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           +WNF KFLVDK G+V +RY   T   SL   I++LL
Sbjct: 132 KWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167

>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 4(Gpx4) Length = 185

Iteration: 1
 Score =  151 bits (381), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/163 (47%), Positives = 107/163 (65%), Gaps = 5/163 (3%)
Query: 4   QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
           Q ++   S+ + S KD  GH V+L  Y+G V ++ NVAS+ G T  NY +L  L+ +Y +
Sbjct: 21  QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE 80
Query: 64  QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK--- 120
            GL ILAFPCNQFG++EPGSN++I +F    +  +F +F KI VNG+ A PL+K +K   
Sbjct: 81  CGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMKIQP 139
Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163
            GK GI G+ I+WNF KFL+DKNG VV RY P    L +E D+
Sbjct: 140 KGK-GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDL 181

>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase Length = 180

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           S +   VKDA+G  V L  YKGKV L+VNVAS C +T+ NY+ L +L+ ++      +LA
Sbjct: 17  SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FPCNQFGE EP  + ++  F    +   FPIF KI + G    P ++ L          +
Sbjct: 77  FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 132
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            +WNF K+LV+  GQVV  + P   +  +  DI  L+
Sbjct: 133 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169

>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7 Length = 181

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 4   QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
           Q +Q  +  +D    + RG  V L  Y+G V L+VNVAS+CG T+ +Y  L QL      
Sbjct: 21  QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP 80
Query: 64  QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK 123
               +LAFPCNQFG++EP SN +I  F    +   FP+F KI V G  A P +K L    
Sbjct: 81  HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS 140
Query: 124 WGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
               G +  WNF K+LV  +G+VV  + PT S+  +   I  L+
Sbjct: 141 ----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180

>pdb|3CYN|A Chain A, The Structure Of Human Gpx8 Length = 189

Iteration: 1
 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 87/157 (55%), Gaps = 4/157 (2%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           S +   VKDA+G  V L  YKGKV L+VNVAS C +T+ NY+ L +L+ ++      +LA
Sbjct: 26  SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           FPCNQFGE EP  + ++  F    +   FPIF KI + G    P ++ L          +
Sbjct: 86  FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KKE 141
Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            +WNF K+LV+  GQVV  + P   +  +  DI  L+
Sbjct: 142 PRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 178

>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione Peroxidase At 0.2-Nm Resolution Length = 198

Iteration: 1
 Score =  106 bits (264), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/186 (34%), Positives = 96/186 (51%), Gaps = 29/186 (15%)
Query: 9   PESIFDLSVKD-ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE 67
           P +++  S +  A G   +LS+ +GKVLLI NVAS  G T  +Y +++ L  +   +GL 
Sbjct: 9   PRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLV 68
Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTR-------FKSEFPIFEKIDVNGEHASPLYKLLK 120
           +L FPCNQFG +E   N++I +  C +       F+  F +FEK +VNGE A PL+  L+
Sbjct: 69  VLGFPCNQFGHQENAKNEEILN--CLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLR 126
Query: 121 SG------------------KWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH 161
                                W  +  +D+ WNF KFLV  +G  V RY      + +E 
Sbjct: 127 EVLPTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEP 186
Query: 162 DIKKLL 167
           DI+ LL
Sbjct: 187 DIETLL 192

>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant Of Human Glutathione Peroxidase 1 Length = 208

Iteration: 1
 Score =  105 bits (261), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 97/188 (51%), Gaps = 25/188 (13%)
Query: 5   FIQNPESIFDLSVKD-ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
           + Q+ +S++  S +  A G  V L + +GKVLLI NVAS  G T  +Y ++++L  +   
Sbjct: 19  YFQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP 78
Query: 64  QGLEILAFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIFEKIDVNGEHASPLYKL 118
           +GL +L FPCNQFG +E   N++I + +        F+  F +FEK +VNG  A PL+  
Sbjct: 79  RGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAF 138
Query: 119 LKSG------------------KWG-IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL 159
           L+                     W  +  +D+ WNF KFLV  +G  + RY      + +
Sbjct: 139 LREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDI 198
Query: 160 EHDIKKLL 167
           E DI+ LL
Sbjct: 199 EPDIEALL 206

>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant Of Human Glutathionine Peroxidase 2 (Gpx2) Length = 208

Iteration: 1
 Score =  101 bits (252), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 25/182 (13%)
Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
           +S +DLS  +  G +VD +T++G+ +LI NVAS CG T  ++ +L++L  ++  + L +L
Sbjct: 26  KSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRFPRR-LVVL 84
Query: 70  AFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW 124
            FPCNQFG +E   N++I + +        ++  F + +K +VNG++  P++  LK    
Sbjct: 85  GFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDKLP 144
Query: 125 GIFGD-------------------DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165
             + D                   D+ WNF KFL+   G+   RY  T   +++E DIK+
Sbjct: 145 YPYDDPFSLMTDPKLIIWSPVRRSDVAWNFEKFLIGPEGEPFRRYSRTFPTINIEPDIKR 204
Query: 166 LL 167
           LL
Sbjct: 205 LL 206

>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5 Length = 215

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/159 (38%), Positives = 84/159 (52%), Gaps = 21/159 (13%)
Query: 25  VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN 84
           V    Y GK +L VNVA+ CG+T + Y EL+ L ++ K  GL +L FPCNQFG++EPG N
Sbjct: 49  VSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN 107
Query: 85  DQIADFV-----CTRFKSEFPIFEKIDVNGE--------------HASPLYKLLKSGKW- 124
            +I   +        F   F +FEK DVNGE              H S +    KS  W 
Sbjct: 108 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWD 167
Query: 125 GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163
            +   DI+WNF KFLV  +G  V R+    ++ S++ DI
Sbjct: 168 PVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDI 206

>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3 (Selenocysteine To Glycine Mutant) Length = 207

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 89/174 (51%), Gaps = 22/174 (12%)
Query: 11  SIFDLSVKDARGHE-VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
           +I++       G E +    Y GK +L VNVAS  G+T   YIEL+ L ++    GL IL
Sbjct: 16  TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVIL 74
Query: 70  AFPCNQFGEEEPGSNDQIADFV-----CTRFKSEFPIFEKIDVNGEHASPLYKLLKSG-- 122
            FPCNQFG++EPG N +I   +        F   F +FEK DVNGE     Y  LK+   
Sbjct: 75  GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 123 -KWGIFG------------DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI 163
               + G             DI+WNF KFLV  +G  + R++  T++ +++ DI
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDI 188

>pdb|2LRT|A Chain A, Solution Structure Of The Uncharacterized Thioredoxin-Like Protein Bvu_1432 From Bacteroides Vulgatus Length = 152

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 34/161 (21%)
Query: 11  SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILA 70
           SI D+ +KD +G+   L+  KGKV+LI        M+ ++ + L +LY+KY  QG EI  
Sbjct: 14  SIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQ 73
Query: 71  FPCNQFGEEE--PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHAS--PLYKLLKSGKWGI 126
              +  G+E     S D +  +VC R           D NG ++S   LY +        
Sbjct: 74  ISLD--GDEHFWKTSADNLP-WVCVR-----------DANGAYSSYISLYNVTNLP---- 115
Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                    + FLV++N ++  R     ++  L+  IKKLL
Sbjct: 116 ---------SVFLVNRNNELSAR---GENIKDLDEAIKKLL 144

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	1e-104
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	1e-101
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	1e-100
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	2e-99
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	3e-98
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	4e-97
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	1e-94
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	3e-94
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	2e-93
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	2e-89
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	2e-85
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	7e-85
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	1e-14
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	2e-13
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	4e-13
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	4e-13
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	6e-13
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	4e-12
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-11
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	4e-11
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	5e-11
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	5e-11
3raz_A	151	Thioredoxin-related protein; structural genomics,	1e-10
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	1e-10
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	2e-10
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-10
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	4e-10
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	3e-09
2lrt_A	152	Uncharacterized protein; structural genomics, thio	5e-09
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	6e-09
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	8e-09
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	2e-08
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	5e-08
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	7e-08
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	3e-07
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	3e-07
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	5e-07
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	5e-07
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	6e-07
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	2e-06
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	5e-06
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	2e-05
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	7e-05

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A Length = 170

 Score =  294 bits (755), Expect = e-104
 Identities = 137/170 (80%), Positives = 156/170 (91%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M +Q  +NPES+ D +VKDA+ ++VDLS +KGKVLLIVNVASKCGMTNSNY E++QLY+K
Sbjct: 1   MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKDQGLEILAFPCNQFGEEEPG+NDQI DFVCTRFKSEFPIF+KIDVNGE+ASPLY+ LK
Sbjct: 61  YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGLS 170
            GKWGIFGDDIQWNFAKFLV+K+GQVVDRYYPTTS LSLE DIK+LL +S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS 170

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A Length = 169

 Score =  286 bits (733), Expect = e-101
 Identities = 80/167 (47%), Positives = 111/167 (66%), Gaps = 1/167 (0%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M+S   ++  SI++ +VKD  G +V L  Y+G V LIVNVA KCG T+ NY +L +++ +
Sbjct: 1   MSSSH-KSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTR 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
              +GL ILAFPCNQFG +EP +  +I  FV  ++  +F +F KI VNG  A  LYK LK
Sbjct: 60  LVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLK 119

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           S + G   ++I+WNF+KFLVD+ GQ V RY PTT+   +E DI +LL
Sbjct: 120 SRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMELL 166

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidoreductase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A Length = 187

 Score =  284 bits (729), Expect = e-100
 Identities = 81/168 (48%), Positives = 109/168 (64%), Gaps = 1/168 (0%)

Query: 2   TSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY 61
           + + +    SIFD  V DA     +L  +KG  LLI NVASKCG T   Y   + LY+KY
Sbjct: 16  SRKKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKY 75

Query: 62  KDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKS 121
           K QG  +LAFP NQFG +EPG+ ++I +FVCT+FK+EFPI  KI+VNGE+A PLY+ +K 
Sbjct: 76  KSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKK 135

Query: 122 GKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
            K GI     I+WNF  FL+D++G  V+R+ P  S+  +E  +  LLG
Sbjct: 136 TKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPLLG 183

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei} Length = 190

 Score =  283 bits (726), Expect = 2e-99
 Identities = 81/168 (48%), Positives = 107/168 (63%), Gaps = 1/168 (0%)

Query: 2   TSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY 61
               +    SIFD  V DA     +L  +KG  LLI NVASKCG T   Y   + LY+KY
Sbjct: 18  GGSHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKY 77

Query: 62  KDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKS 121
           K QG  +LAFPCNQFG +EPG+ ++I +FVCT+FK+EFPI  KI+VNGE+A PLY+ +K 
Sbjct: 78  KSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKK 137

Query: 122 GKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
            K GI     I+WNF  FL+D++G  V+R+ P  S+  +E  +  LL 
Sbjct: 138 TKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE 185

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens} Length = 183

 Score =  280 bits (718), Expect = 3e-98
 Identities = 76/163 (46%), Positives = 104/163 (63%), Gaps = 3/163 (1%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           +   S+ + S KD  GH V+L  Y+G V ++ NVAS+CG T  NY +L  L+ +Y + GL
Sbjct: 22  RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGL 81

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK--W 124
            ILAFPCNQFG++EPGSN++I +F    +  +F +F KI VNG+ A PL+K +K      
Sbjct: 82  RILAFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK 140

Query: 125 GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           GI G+ I+WNF KFL+DKNG VV RY P    L +E D+    
Sbjct: 141 GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 183

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens} Length = 185

 Score =  277 bits (711), Expect = 4e-97
 Identities = 75/163 (46%), Positives = 103/163 (63%), Gaps = 3/163 (1%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL 66
           +   S+ + S KD  GH V+L  Y+G V ++ NVAS+ G T  NY +L  L+ +Y + GL
Sbjct: 24  RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGL 83

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK--W 124
            ILAFPCNQFG++EPGSN++I +F    +  +F +F KI VNG+ A PL+K +K      
Sbjct: 84  RILAFPCNQFGKQEPGSNEEIKEF-AAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGK 142

Query: 125 GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           GI G+ I+WNF KFL+DKNG VV RY P    L +E D+    
Sbjct: 143 GILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHYF 185

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae} Length = 171

 Score =  270 bits (693), Expect = 1e-94
 Identities = 81/168 (48%), Positives = 103/168 (61%), Gaps = 2/168 (1%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           M      +    + L+  D +G        KGKV+LIVNVASKCG T   Y EL  LY +
Sbjct: 1   MGHHHHHHMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKR 59

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           YKD+G  I+ FPCNQFG +EPGS+++IA F    +   FPI +KIDVNG +  P+YK LK
Sbjct: 60  YKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLK 119

Query: 121 SGKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           S K G+ G   I+WNF KFLVDK G+V +RY   T   SL   I++LL
Sbjct: 120 SQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEELL 167

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 181

 Score =  270 bits (692), Expect = 3e-94
 Identities = 64/167 (38%), Positives = 89/167 (53%), Gaps = 4/167 (2%)

Query: 1   MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDK 60
           +  Q +Q  +  +D    + RG  V L  Y+G V L+VNVAS+CG T+ +Y  L QL   
Sbjct: 18  LYFQSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRD 77

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
                  +LAFPCNQFG++EP SN +I  F    +   FP+F KI V G  A P +K L 
Sbjct: 78  LGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLA 137

Query: 121 SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                  G +  WNF K+LV  +G+VV  + PT S+  +   I  L+
Sbjct: 138 QTS----GKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALV 180

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB: 3cyn_A Length = 180

 Score =  267 bits (686), Expect = 2e-93
 Identities = 61/158 (38%), Positives = 87/158 (55%), Gaps = 4/158 (2%)

Query: 10  ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEIL 69
            S +   VKDA+G  V L  YKGKV L+VNVAS C +T+ NY+ L +L+ ++      +L
Sbjct: 16  NSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVL 75

Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
           AFPCNQFGE EP  + ++  F    +   FPIF KI + G    P ++ L          
Sbjct: 76  AFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSS----KK 131

Query: 130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           + +WNF K+LV+  GQVV  + P   +  +  DI  L+
Sbjct: 132 EPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALV 169

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A Length = 208

 Score =  258 bits (662), Expect = 2e-89
 Identities = 63/186 (33%), Positives = 94/186 (50%), Gaps = 25/186 (13%)

Query: 7   QNPESIFDLSVKDARGHE-VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG 65
           Q+ +S++  S +   G E V L + +GKVLLI NVAS  G T  +Y ++++L  +   +G
Sbjct: 21  QSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG 80

Query: 66  LEILAFPCNQFGEEEPGSNDQIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           L +L FPCNQFG +E   N++I + +        F+  F +FEK +VNG  A PL+  L+
Sbjct: 81  LVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 140

Query: 121 SGKWGIFGD-------------------DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH 161
                   D                   D+ WNF KFLV  +G  + RY      + +E 
Sbjct: 141 EALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEP 200

Query: 162 DIKKLL 167
           DI+ LL
Sbjct: 201 DIEALL 206

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens} Length = 215

 Score =  249 bits (637), Expect = 2e-85
 Identities = 65/182 (35%), Positives = 90/182 (49%), Gaps = 22/182 (12%)

Query: 7   QNPESIFDLSVKDARGHE-VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG 65
               +I+D        +E V    Y GK +L VNVA+ CG+T + Y EL+ L ++ K  G
Sbjct: 30  DEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLT-AQYPELNALQEELKPYG 88

Query: 66  LEILAFPCNQFGEEEPGSNDQIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           L +L FPCNQFG++EPG N +I   +        F   F +FEK DVNGE    ++  LK
Sbjct: 89  LVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLK 148

Query: 121 S---GKWGIFGD------------DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK 165
                   I G             DI+WNF KFLV  +G  V R+    ++ S++ DI  
Sbjct: 149 HSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVMRWSHRATVSSVKTDILA 208

Query: 166 LL 167
            L
Sbjct: 209 YL 210

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens} Length = 207

 Score =  247 bits (632), Expect = 7e-85
 Identities = 63/179 (35%), Positives = 90/179 (50%), Gaps = 22/179 (12%)

Query: 10  ESIFDLSVKDARGHE-VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI 68
            +I++       G E +    Y GK +L VNVAS  G+T   YIEL+ L ++    GL I
Sbjct: 15  GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVI 73

Query: 69  LAFPCNQFGEEEPGSNDQIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLLKS-- 121
           L FPCNQFG++EPG N +I   +        F   F +FEK DVNGE     Y  LK+  
Sbjct: 74  LGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSC 133

Query: 122 -GKWGIFG------------DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                + G             DI+WNF KFLV  +G  + R++  T++ +++ DI   +
Sbjct: 134 PPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVSNVKMDILSYM 192

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 66.7 bits (163), Expect = 1e-14
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 14/157 (8%)

Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYI-ELSQLYDKYKDQGLEILAF 71
             +        ++ L+  +GKV++I      C     + I    ++   + +  + +L  
Sbjct: 9   LQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGL 68

Query: 72  PCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDI 131
                  E   +   +  F+   ++ +FP+   +D  G+ A P            +   +
Sbjct: 69  HTVFEHHEA-MTPISLKAFL-HEYRIKFPVG--VDQPGDGAMP-------RTMAAYQ--M 115

Query: 132 QWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
           +   +  L+DK G +   ++   S L L  +I  LLG
Sbjct: 116 RGTPSLLLIDKAGDLRAHHFGDVSELLLGAEIATLLG 152

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 35/160 (21%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             S+ D  G  V  +  +GKV L +N     C      M       + +  + YK++  +
Sbjct: 10  AFSLPDLHGKTVSNADLQGKVTL-INFWFPSCPGCVSEMPK-----IIKTANDYKNKNFQ 63

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           +LA        E       +  +V   +   F +    D +               +G  
Sbjct: 64  VLAVAQPIDPIE------SVRQYV-KDYGLPFTVM--YDADKAVGQ---------AFGTQ 105

Query: 128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                +     L+ K G+++  Y        L  +I    
Sbjct: 106 V----YP-TSVLIGKKGEILKTYVGEPDFGKLYQEIDTAW 140

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 62.8 bits (153), Expect = 4e-13
 Identities = 24/162 (14%), Positives = 49/162 (30%), Gaps = 33/162 (20%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             S     G     ++ KGK  + VN  A+ C      + +     + Q+   +  +G  
Sbjct: 16  SFSGVTVDGKPFSSASLKGKAYI-VNFFATWCPPCRSEIPD-----MVQVQKTWASRGFT 69

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
            +    N+           + +++       +P+   +       +           GI 
Sbjct: 70  FVGIAVNE-------QLPNVKNYM-KTQGIIYPVM--MATPELIRA----FNGYIDGGIT 115

Query: 128 GDDIQWNF-AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
           G          F++D +G V        S    +  +K  LG
Sbjct: 116 G------IPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALG 151

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 65.0 bits (158), Expect = 4e-13
 Identities = 29/160 (18%), Positives = 55/160 (34%), Gaps = 31/160 (19%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
              +       +DL + +GKV+L ++  A  C      +       +   Y  YKD GL 
Sbjct: 64  TGWLNTPGNKPIDLKSLRGKVVL-IDFWAYSCINCQRAIP-----HVVGWYQAYKDSGLA 117

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           ++     ++  E+      +A          +PI   +D N    +          +   
Sbjct: 118 VIGVHTPEYAFEK--VPGNVAKGA-ANLGISYPIA--LDNNYATWT---------NYRNR 163

Query: 128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                W  A++L+D  G V    +        E  +++LL
Sbjct: 164 Y----WP-AEYLIDATGTVRHIKFGEGDYNVTETLVRQLL 198

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 62.1 bits (151), Expect = 6e-13
 Identities = 18/158 (11%), Positives = 56/158 (35%), Gaps = 14/158 (8%)

Query: 13  FDLSVKDA-RGHEVDLSTYKGKVLLIVNVASKCGMTNSNYI-ELSQLYDKYKDQGLEILA 70
            +L V++      +     +GKV+++      C    ++ + +  +++    +  ++++ 
Sbjct: 10  LELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIG 69

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
                   +   + + +  F+   F  +FP+   +D+  E                +   
Sbjct: 70  LHSVFEHHDV-MTPEALKVFI-DEFGIKFPVA--VDMPREGQRI------PSTMKKYR-- 117

Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
           ++   +  L D+ G++    +       L   +  LL 
Sbjct: 118 LEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLS 155

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 59.6 bits (145), Expect = 4e-12
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 35/162 (21%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             S  D  G  V L+  KGK + I +V A+ CG     +       L +L +KY  + + 
Sbjct: 12  SFSYPDINGKTVSLADLKGKYIYI-DVWATWCGPCRGELPA-----LKELEEKYAGKDIH 65

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
            ++  C++       +     + V         +   +  +       Y           
Sbjct: 66  FVSLSCDK-------NKKAWENMVTKDQLKGIQLH--MGTDRT-FMDAYL---------- 105

Query: 128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL 169
              I       L+D++G+++       S         +LLGL
Sbjct: 106 ---INGIPRFILLDRDGKIISANMTRPSDPKTAEKFNELLGL 144

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 57.3 bits (139), Expect = 2e-11
 Identities = 24/160 (15%), Positives = 53/160 (33%), Gaps = 33/160 (20%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           D  +    G    LS YKGK + +    AS C      + +       ++  +  D  + 
Sbjct: 4   DFELMGVDGKTYRLSDYKGKKVYL-KFWASWCSICLASLPD-----TDEIAKEAGDDYVV 57

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           +        G +   S     ++         P+   +D +G+             +G+ 
Sbjct: 58  LTV---VSPGHKGEQSEADFKNWYKGLDYKNLPVL--VDPSGKLLE---------TYGVR 103

Query: 128 GDDIQWNF-AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166
                  +  +  +DK G++V  +       ++   +K+L
Sbjct: 104 S------YPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL 137

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 35/163 (21%), Positives = 64/163 (39%), Gaps = 39/163 (23%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           D ++    G  V LS   G V+  ++  AS CG             ++Q+  KYK +G +
Sbjct: 11  DFALPGKTG-VVKLSDKTGSVVY-LDFWASWCGPCRQSFPW-----MNQMQAKYKAKGFQ 63

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           ++A   +               F+  +  +EF +    D  G+             +G+ 
Sbjct: 64  VVAVNLDA-------KTGDAMKFL-AQVPAEFTVA--FDPKGQTPR---------LYGVK 104

Query: 128 GDDIQWNFAKFLVDKNGQVVDRY--YPTTSLLSLEHDIKKLLG 168
           G  +      FL+D+NG+V+ ++  +      +LE  I   LG
Sbjct: 105 G--MP---TSFLIDRNGKVLLQHVGFRPADKEALEQQILAALG 142

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 22/160 (13%), Positives = 43/160 (26%), Gaps = 30/160 (18%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             ++K A      +   K K  LI    AS C      +      +  +     K     
Sbjct: 20  MSTMKTADNRPASVYLKKDKPTLI-KFWASWCPLCLSELG-----QAEKWAQDAKFSSAN 73

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           ++      F  E+   + +   +       + P+    D  G  A             I 
Sbjct: 74  LITVASPGFLHEK--KDGEFQKWYAGLNYPKLPVV--TDNGGTIAQ---------NLNIS 120

Query: 128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                +  +  L+ K+G V      + +       I+   
Sbjct: 121 V----YP-SWALIGKDGDVQRIVKGSINEAQALALIRNPN 155

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 28/160 (17%), Positives = 58/160 (36%), Gaps = 36/160 (22%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           +  ++D  G  ++LS  KGK +  +N   + C              ++  Y  +K QG+E
Sbjct: 8   NFVLEDTNGKRIELSDLKGKGVF-LNFWGTWCEPCKKEFPY-----MANQYKHFKSQGVE 61

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           I+A    +       S   + +F+   +   FP+   +D + +     Y           
Sbjct: 62  IVAVNVGE-------SKIAVHNFM-KSYGVNFPVV--LDTDRQ-VLDAYD---------- 100

Query: 128 GDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              +      FL++  G+VV     T +   +   +  + 
Sbjct: 101 ---VSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLIK 137

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 32/152 (21%)

Query: 22  GHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLEILAFPCNQ 75
                L + K  V + VN+ A+ CG     M       +S+ Y   K   ++++      
Sbjct: 14  NTPQSLQSLKAPVRI-VNLWATWCGPCRKEMP-----AMSKWYKAQKKGSVDMVG----- 62

Query: 76  FGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNF 135
              +     D I +F+  +    +PI+      G ++    K         +G+ +    
Sbjct: 63  IALDTS---DNIGNFL-KQTPVSYPIW---RYTGANSRNFMKT--------YGNTVGVLP 107

Query: 136 AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              +               +  SL   +K   
Sbjct: 108 FTVVEAPKCGYRQTITGEVNEKSLTDAVKLAH 139

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 43/164 (26%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           +  +    G    L+ Y+GK++L VN  AS C      M +     + +L   +    L 
Sbjct: 23  NFKLPTLSGENKSLAQYRGKIVL-VNFWASWCPYCRDEMPS-----MDRLVKSFPKGDLV 76

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           +LA   N           +  +    R    F      D  G+            ++G  
Sbjct: 77  VLAV--NV--------EKRFPEKY-RRAPVSFNFL--SDATGQVQQ---------RYGAN 114

Query: 128 GDDIQWNF-AKFLVDKNGQVVDRY--YPTTSLLSLEHDIKKLLG 168
                      F+VD+ G +  R           +   +K L G
Sbjct: 115 R------LPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSLEG 152

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 24/163 (14%), Positives = 54/163 (33%), Gaps = 39/163 (23%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           D ++    G  V LS  KG+V++ VN  A+ C      + +     + +L      +   
Sbjct: 10  DFTLNTLNGEVVKLSDLKGQVVI-VNFWATWCPPCREEIPS-----MMRLNAAMAGKPFR 63

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
           +L    ++      G    + +F   +     P+   +D +               +G  
Sbjct: 64  MLCVSIDE------GGKVAVEEFF-RKTGFTLPVL--LDADKRVGK---------LYGTT 105

Query: 128 GDDIQWNF-AKFLVDKNGQVVDRY--YPTTSLLSLEHDIKKLL 167
           G          F++D++G ++ +           +   +   L
Sbjct: 106 G------VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL 142

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 55.4 bits (134), Expect = 2e-10
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 32/162 (19%)

Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGL 66
                    G          K  L ++  +  C      M      ++++  DKY+DQ L
Sbjct: 10  LTGEKAWLNGEVTREQLIGEKPTL-IHFWSISCHLCKEAMP-----QVNEFRDKYQDQ-L 62

Query: 67  EILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI 126
            ++A    +  ++      +I +          PIF  +D +               +  
Sbjct: 63  NVVAVHMPRSEDDL--DPGKIKETA-AEHDITQPIF--VDSDHALTD---------AFEN 108

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
                    A ++ DK GQ+       + +  LE  + ++L 
Sbjct: 109 EY----VP-AYYVFDKTGQLRHFQAGGSGMKMLEKRVNRVLA 145

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 24/151 (15%), Positives = 51/151 (33%), Gaps = 36/151 (23%)

Query: 7   QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDK 60
           + P       +K   G ++ +   KG+  + ++   S C      +           YD 
Sbjct: 10  KQPAVPAVFLMKTIEGEDISIP-NKGQKTI-LHFWTSWCPPCKKELPQ-----FQSFYDA 62

Query: 61  YKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
           +    ++++    N    E+  +   + DF+    K  FPI   +D  GE          
Sbjct: 63  HPSDSVKLVTV--NLVNSEQ--NQQVVEDFI-KANKLTFPIV--LDSKGELMK------- 108

Query: 121 SGKWGIFGDDIQWNF-AKFLVDKNGQVVDRY 150
             ++ I            FL+++ G++    
Sbjct: 109 --EYHIIT------IPTSFLLNEKGEIEKTK 131

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 22/154 (14%), Positives = 53/154 (34%), Gaps = 21/154 (13%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
           +L + D  G    L   + K  ++    S+CG       +L   + K + +G+++ A   
Sbjct: 13  NLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANI 72

Query: 74  NQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQW 133
            +        +++   F+ ++    +        + +     Y             DI  
Sbjct: 73  ER-------KDEEWLKFIRSKKIGGWLNVRDSKNHTDFKI-TY-------------DIYA 111

Query: 134 NFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
               +++DKN  ++ +     +L       +K L
Sbjct: 112 TPVLYVLDKNKVIIAKRIGYENLDDFLVQYEKSL 145

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 28/155 (18%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
           D+ +KD +G+   L+  KGKV+LI        M+ ++ + L +LY+KY  QG EI     
Sbjct: 17  DIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQI-- 74

Query: 74  NQFGEEEPGSNDQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ 132
                    S D    F  T   +  +      +        LY             ++ 
Sbjct: 75  ---------SLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLY-------------NVT 112

Query: 133 WNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              + FLV++N ++  R     ++  L+  IKKLL
Sbjct: 113 NLPSVFLVNRNNELSARG---ENIKDLDEAIKKLL 144

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 21/158 (13%), Positives = 48/158 (30%), Gaps = 28/158 (17%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG---MTNSNYIELSQLYDKYKDQGLEILA 70
           D +     G    +S  K +  ++      C         + E+    +  ++  L +LA
Sbjct: 9   DFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLA 68

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
              ++       + ++ A          + +      +      LY             D
Sbjct: 69  IYPDE-------NREEWATKA-VYMPQGWIVGWNKAGDIRTRQ-LY-------------D 106

Query: 131 IQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
           I+     +L+D   +V+ +    TS+  L   +    G
Sbjct: 107 IRATPTIYLLDGRKRVILK---DTSMEQLIDYLATQAG 141

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 26/155 (16%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72
            ++  D +G+ V L+ +KGK +L+ +   + C         L + Y+ +KD+G  I    
Sbjct: 11  AITGIDLKGNSVSLNDFKGKYVLV-DFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVS 69

Query: 73  CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ 132
            ++         +     +         +  + D   +     Y              I 
Sbjct: 70  TDR-------REEDWKKAIEEDKSYWNQVLLQKDDVKD-VLESYC-------------IV 108

Query: 133 WNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                 LVD  G++V +         L + ++K +
Sbjct: 109 GFPHIILVDPEGKIVAKELRGD---DLYNTVEKFV 140

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 30/153 (19%), Positives = 49/153 (32%), Gaps = 32/153 (20%)

Query: 5   FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLY 58
               P  + DL+ +DA G    LS ++GK LL+ N+ A+ C      M       L +L 
Sbjct: 33  MASAPLKLPDLAFEDADGKPKKLSDFRGKTLLV-NLWATWCVPCRKEMPA-----LDELQ 86

Query: 59  DKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKL 118
            K      E++A   +          ++   F+     +    F   D   +    L  +
Sbjct: 87  GKLSGPNFEVVAINIDT------RDPEKPKTFLKEANLTRLGYF--NDQKAKVFQDLKAI 138

Query: 119 LKSGKWGIFGDDIQWNF-AKFLVDKNGQVVDRY 150
                    G           LVD  G  +   
Sbjct: 139 -----GRALG------MPTSVLVDPQGCEIATI 160

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 17/139 (12%), Positives = 43/139 (30%), Gaps = 25/139 (17%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG---MTNSNYIELSQLYDKYKDQGLEILA 70
           + +     G +  L  +  +  L+      C               +      + L++L+
Sbjct: 13  NFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLS 72

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
              ++         D+        F  E+      ++  ++ + LY             D
Sbjct: 73  IYPDE-------ELDEWKKHR-NDFAKEWTNGYDKELVIKNKN-LY-------------D 110

Query: 131 IQWNFAKFLVDKNGQVVDR 149
           ++     +L+DKN  V+ +
Sbjct: 111 LRAIPTLYLLDKNKTVLLK 129

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 48.5 bits (116), Expect = 7e-08
 Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 34/162 (20%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           D ++    G +V LS+ +GKV+++    AS CG     M       + +          +
Sbjct: 15  DFTITLTDGKQVTLSSLRGKVVML-QFTASWCGVCRKEMPF-----IEKDIWLKHKDNAD 68

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
                 ++  +E     +++  F        +P+   +D   +  +         K+ + 
Sbjct: 69  FALIGIDR--DEPL---EKVLAFA-KSTGVTYPLG--LDPGADIFA---------KYALR 111

Query: 128 GDDIQWNFAKFLVDKNGQVVDRY--YPTTSLLSLEHDIKKLL 167
              I  N    L+D+ G++V     Y      SL   I ++L
Sbjct: 112 DAGITRN---VLIDREGKIVKLTRLYNEEEFASLVQQINEML 150

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 21/136 (15%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
            +        +       G+  L+   A+    + +  ++L+   +K+    + + +   
Sbjct: 15  RIEFLGNDA-KASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSI-- 71

Query: 74  NQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQW 133
               E+E    + +         ++F      +      S LYK            D++ 
Sbjct: 72  -SMDEKESIFTETVKIDKLD-LSTQFHEGLGKE------SELYKKY----------DLRK 113

Query: 134 NFAKFLVDKNGQVVDR 149
            F  FL++  G ++  
Sbjct: 114 GFKNFLINDEGVIIAA 129

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 30/171 (17%), Positives = 57/171 (33%), Gaps = 41/171 (23%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             S+    G  + L+   G V+++    A+ C              L +L +KY++  + 
Sbjct: 19  SFSLTTIDGEVISLNNVGGDVVIL-WFMAAWCPSCVYMADL-----LDRLTEKYREISVI 72

Query: 68  ILAF---------PCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKL 118
            + F           N+ G   P + +    F+   +     I   +  +G         
Sbjct: 73  AIDFWTAEALKALGLNKPGYPPPDTPEMFRKFI-ANYGDPSWIM--VMDDGSLVE----- 124

Query: 119 LKSGKWGIFGDDIQWNF-AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG 168
               K+ +             ++DK+  V+     T SL  LE  IK + G
Sbjct: 125 ----KFNVRS------IDYIVIMDKSSNVLYA-GTTPSLGELESVIKSVQG 164

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 19/163 (11%), Positives = 41/163 (25%), Gaps = 42/163 (25%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             +     G   D ++ +GK  + +      C        +     LSQ+        + 
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAV-LWFWTPWCPFCNAEAPS-----LSQVAAANP--AVT 57

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
            +                 +  FV +++   F      D +G   +         ++ + 
Sbjct: 58  FVGIATRA-------DVGAMQSFV-SKYNLNFTNL--NDADGVIWA---------RYNVP 98

Query: 128 GDDIQWNF-AKFLVDKNGQV--VDRYYPTTSLLSLEHDIKKLL 167
                    A      +G    V+      S   L   +  L 
Sbjct: 99  W------QPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAALT 135

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 40/168 (23%)

Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQG- 65
                    G +++LS ++ +V++ +N     C             +L  ++++ +  G 
Sbjct: 40  IGGDSLMEEGTQINLSDFENQVVI-LNAWGQWCAPCRSESD-----DLQIIHEELQAAGN 93

Query: 66  -----LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK 120
                  +L        +      D   DFV T    ++P     D     A+ L     
Sbjct: 94  GDTPGGTVLGI---NVRDYSR---DIAQDFV-TDNGLDYPSI--YDPPFMTAASL----- 139

Query: 121 SGKWGIFGDDIQWNF-AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            G                 ++DK  +    +    +   +      L+
Sbjct: 140 -GGVPASV------IPTTIVLDKQHRPAAVFLREVTSKDVLDVALPLV 180

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 29/159 (18%)

Query: 14  DLSVKDARGHEVDLS--TYKGKVLLIVNVASKCG--MTNSNYIELSQLYDKYK-DQGLEI 68
             S+ +A+G ++  S   +K K LLI   AS         +  EL ++Y KYK ++ + +
Sbjct: 13  FFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGM 72

Query: 69  LAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG 128
           L    +           Q  D +  R   ++      D  G + S + K           
Sbjct: 73  LGISLDV-------DKQQWKDAI-KRDTLDWEQV--CDFGGLN-SEVAKQYS-------- 113

Query: 129 DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
             I    A  L+  +G+++ +         L+  I+ ++
Sbjct: 114 --IYKIPANILLSSDGKILAKNLRGE---ELKKKIENIV 147

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 22/161 (13%), Positives = 52/161 (32%), Gaps = 37/161 (22%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
           D  + D +G  V  +T     ++     AS C              L ++ ++       
Sbjct: 13  DFLLLDPKGQPVTPATVSKPAVI--VFWASWCTVCKAEFPG-----LHRVAEETGVP-FY 64

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI-FEKIDVNGEHASPLYKLLKSGKWGI 126
           +++            + + + +++   +    P+     D   E A+         ++ +
Sbjct: 65  VISREPRD-------TREVVLEYM-KTYPRFIPLLASDRDRPHEVAA---------RFKV 107

Query: 127 FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            G    W    F+VD+ G+VV  +       +L   +    
Sbjct: 108 LG--QPWT---FVVDREGKVVALFAGRAGREALLDALLLAG 143

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 27/158 (17%), Positives = 53/158 (33%), Gaps = 29/158 (18%)

Query: 14  DLSVKDARGHEVDLST--YKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKY-KDQGLEIL 69
             S+ + +G ++  S   ++ + LL+ N  AS C        EL +L  +Y K++   +L
Sbjct: 13  YFSLPNEKGEKLSRSAERFRNRYLLL-NFWASWCDPQPEANAELKRLNKEYKKNKNFAML 71

Query: 70  AFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD 129
               +          +     +  +    +      D  G   S   K            
Sbjct: 72  GISLDI-------DREAWETAI-KKDTLSWDQV--CDFTGLS-SETAKQYA--------- 111

Query: 130 DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
            I       L+   G+++ R        +L   +K+LL
Sbjct: 112 -ILTLPTNILLSPTGKILARDIQGE---ALTGKLKELL 145

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 24/161 (14%), Positives = 44/161 (27%), Gaps = 40/161 (24%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKYKDQGLE 67
             S K   GH+    +  GK  + +   A  C              + Q+   + +    
Sbjct: 7   QFSAKTLDGHDFHGESLLGKPAV-LWFWAPWCPTCQGEAP-----VVGQVAASHPEVTFV 60

Query: 68  ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIF 127
            +A      G ++      + +FV       F      D +G   +          +G+ 
Sbjct: 61  GVA------GLDQV---PAMQEFVNKYPVKTFTQL--ADTDGSVWA---------NFGVT 100

Query: 128 GDDIQWNF-AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
                    A   VD +G V       +    L   +  L 
Sbjct: 101 Q------QPAYAFVDPHGNVDVVRGRMSQ-DELTRRVTALT 134

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 14 DLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCG-----MTNSNYIELSQLYDKY-KDQGL 66
            +   ++  EV L +  GK + +    AS C              L++ Y+K+   +  
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFL-YFSASWCPPCRGFTPV-----LAEFYEKHHVAKNF 63

Query: 67 EILA 70
          E++ 
Sbjct: 64 EVVL 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	100.0
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	100.0
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	100.0
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	100.0
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	100.0
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	100.0
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	100.0
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	100.0
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	100.0
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	100.0
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	100.0
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	100.0
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.97
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.97
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.97
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.97
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.97
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.97
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.97
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.97
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.97
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.97
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.97
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.97
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.97
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.97
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.96
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.96
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.96
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.96
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.96
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.96
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.96
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.96
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.96
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.96
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.96
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.96
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.96
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.96
3me7_A	170	Putative uncharacterized protein; electron transfe	99.96
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.96
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.96
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.96
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.96
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.96
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.96
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.96
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.96
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.96
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.96
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.95
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.95
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.95
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.95
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.95
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.95
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.95
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.95
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.95
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.95
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.95
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.95
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.95
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.95
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.95
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.95
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.95
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.95
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.95
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.95
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.95
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.95
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.95
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.95
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.95
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.94
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.94
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.94
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.94
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.94
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.94
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.94
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.94
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.94
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.89
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.94
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.94
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.94
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.93
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.93
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.93
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.93
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.92
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.92
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.92
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.91
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.9
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.9
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.9
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.82
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.89
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.87
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.85
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.84
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.79
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.77
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.76
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.74
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.72
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.68
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.64
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.63
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.63
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.63
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.62
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.62
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.61
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.61
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.61
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.61
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.6
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.6
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.6
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.6
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.59
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.59
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.58
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.58
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.58
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.58
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.58
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.58
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.58
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.58
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.57
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.57
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.57
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.57
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.57
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.56
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.56
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.56
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.56
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.56
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.56
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.56
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.56
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.56
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.55
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.55
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.55
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.54
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.31
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.54
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.53
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.53
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.53
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.53
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.53
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.53
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.52
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.52
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.51
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.51
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.51
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.51
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.51
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.51
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.51
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.5
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.5
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.49
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.49
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.49
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.49
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.48
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.48
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.48
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.46
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.46
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.46
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.44
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.44
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	99.16
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.43
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.43
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.41
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.39
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.39
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.38
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.37
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.36
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.36
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.35
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.34
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.33
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.27
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.27
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.25
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.25
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.25
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.24
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.24
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.23
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.22
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.21
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.2
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.18
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.18
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	99.14
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.14
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.13
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.11
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.1
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.09
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.09
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.03
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.03
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	99.02
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.02
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.98
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	98.87
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.86
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.86
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.79
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.78
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.73
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.73
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.72
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.7
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.63
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.53
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.52
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.5
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.47
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.44
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.39
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.38
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.34
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.3
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.25
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.22
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.21
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	98.2
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	98.0
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.99
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.94
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.91
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	97.88
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.79
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.77
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.66
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.65
3c7m_A	195	Thiol:disulfide interchange protein DSBA-like; red	97.57
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.36
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.36
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.35
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	97.24
3feu_A	185	Putative lipoprotein; alpha-beta structure, struct	97.19
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.13
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.07
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.01
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.0
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	96.98
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	96.95
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	96.8
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	96.77
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	96.77
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	96.75
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	96.75
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	96.73
3l9s_A	191	Thiol:disulfide interchange protein; thioredoxin-f	96.59
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	96.37
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	96.3
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	96.02
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	95.83
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	95.44
3kzq_A	208	Putative uncharacterized protein VP2116; protein w	95.25
3gha_A	202	Disulfide bond formation protein D; BDBD, DSBA-lik	95.2
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	94.95
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	94.87
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	94.87
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	94.76
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	94.61
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	94.5
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	94.29
3gmf_A	205	Protein-disulfide isomerase; oxidoreductase, PSI-2	93.83
3bci_A	186	Disulfide bond protein A; thiol-disulfide oxidored	93.74
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	93.5
3f4s_A	226	Alpha-DSBA1, putative uncharacterized protein; thi	93.19
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	92.74
3gn3_A	182	Putative protein-disulfide isomerase; MCSG, PSI, s	92.64
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	92.18
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	92.02
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	91.79
2l4c_A	124	Endoplasmic reticulum resident protein 27; ERP27,	91.71
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	91.44
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	90.92
3l78_A	120	Regulatory protein SPX; transcription, transcripti	90.87
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	89.99
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	89.18
3fz4_A	120	Putative arsenate reductase; APC61768, structural	89.05
3gkx_A	120	Putative ARSC family related protein; ARSC family	87.69
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	87.68
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	84.5
3rdw_A	121	Putative arsenate reductase; structural genomics,	83.98
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	83.06

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=100.00  E-value=1e-36  Score=211.18  Aligned_cols=170  Identities=81%  Similarity=1.319  Sum_probs=140.6

Q ss_pred             CccccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            1 MTSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         1 ~~~~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      |.......|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.+...+
T Consensus         1 ~~~~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~~~~   80 (170)
T 2p5q_A            1 MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQGLEILAFPCNQFGEEE   80 (170)
T ss_dssp             ---------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCC
T ss_pred             CCCCcCCCCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCCEEEEEEECCCCCCCC
Confidence            45667789999999999999999999999999999999999999999999999999999999989999999999777767


Q ss_pred             CCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHH
Q 030881           81 PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~  160 (170)
                      +++.+++++|++.+++.+||++...|..+.....++.+.....++.++..+||+|++||||++|+|++++.|..+++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~~~g~~~~~~l~  160 (170)
T 2p5q_A           81 PGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLE  160 (170)
T ss_dssp             CSCHHHHHHHHHHHTCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEEECTTSCGGGGH
T ss_pred             CCCHHHHHHHHHHhcCCCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEeeCCCCCHHHHH
Confidence            78899999999756899999985557777766666665543323333357899999999999999999999988999999


Q ss_pred             HHHHHHhcCC
Q 030881          161 HDIKKLLGLS  170 (170)
Q Consensus       161 ~~l~~~l~~~  170 (170)
                      +.|+++|+++
T Consensus       161 ~~i~~ll~~s  170 (170)
T 2p5q_A          161 RDIKQLLEIS  170 (170)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHhhcC
Confidence            9999999865

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=100.00  E-value=7e-37  Score=215.90  Aligned_cols=165  Identities=49%  Similarity=0.881  Sum_probs=145.8

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      .+..+.++|+|++.|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|+++|+|++|+++..++++.
T Consensus        19 ~~~~~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~e~~~~   98 (187)
T 3dwv_A           19 KMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPSNQFGGQEPGNE   98 (187)
T ss_dssp             -CTTCCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGTCEEEEEEBCCCSSCSSSBT
T ss_pred             hhcCCCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCCeEEEEEECcccCCCCCCCH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999998877777889


Q ss_pred             HHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccC-CccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      +++++|++.+++++||++.+.|..+.....+|.+.....++.++ ..+||++++||||++|+|++.+.|..+++++.+.|
T Consensus        99 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~~~g~~~~~~l~~~i  178 (187)
T 3dwv_A           99 EEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKL  178 (187)
T ss_dssp             THHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEEECCCCCHHHHHHHH
Confidence            99999997667999999966688888777778777776666655 46777879999999999999999999999999999


Q ss_pred             HHHhcC
Q 030881          164 KKLLGL  169 (170)
Q Consensus       164 ~~~l~~  169 (170)
                      +++|+.
T Consensus       179 ~~lL~~  184 (187)
T 3dwv_A          179 IPLLGS  184 (187)
T ss_dssp             HHHC--
T ss_pred             HHHHhc
Confidence            999875

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=100.00  E-value=2.7e-35  Score=203.81  Aligned_cols=164  Identities=48%  Similarity=0.830  Sum_probs=139.8

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ....|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.++..++++.
T Consensus         4 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~   83 (169)
T 2v1m_A            4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAE   83 (169)
T ss_dssp             ---CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCH
T ss_pred             cccCCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCCeEEEEEECCccCCCCCCCH
Confidence            46789999999999999999999999999999999999999999999999999999999899999999987766667788


Q ss_pred             HHHHHHH-HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           85 DQIADFV-CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        85 ~~~~~~~-~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      +++++|+ + +++.+||++.+.|..+.....+|.+......+..+..+.+.|++||||++|+|++++.|..+++++.+.|
T Consensus        84 ~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  162 (169)
T 2v1m_A           84 AEIKKFVTE-KYGVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDI  162 (169)
T ss_dssp             HHHHHHHHH-HHCCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEEECTTSCGGGGHHHH
T ss_pred             HHHHHHHHH-hcCCCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEEcCCCCCHHHHHHHH
Confidence            9999994 5 8899999985447777666556666554444443334777889999999999999999988999999999


Q ss_pred             HHHhcC
Q 030881          164 KKLLGL  169 (170)
Q Consensus       164 ~~~l~~  169 (170)
                      +++|++
T Consensus       163 ~~ll~~  168 (169)
T 2v1m_A          163 MELLEK  168 (169)
T ss_dssp             HHHHHC
T ss_pred             HHHhcc
Confidence            999875

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.6e-35  Score=211.86  Aligned_cols=163  Identities=39%  Similarity=0.638  Sum_probs=140.6

Q ss_pred             ccCCcccccceeeCCC-CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            6 IQNPESIFDLSVKDAR-GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~-g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ......+|+|++.|.+ |+.++|++++||++||+|||+||++|+ ++|.|++++++|+++|++||+|++|+|...++++.
T Consensus        29 ~~~~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g~~Vlgvs~d~f~~~e~~~~  107 (215)
T 2i3y_A           29 KDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDN  107 (215)
T ss_dssp             CCCCCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSCH
T ss_pred             ccccCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCCeEEEEEEccccCcCCCCCH
Confidence            3457789999999999 999999999999999999999999999 99999999999999999999999999887778888


Q ss_pred             HHHHHHHH-----hhcCCCCCceEEeecCCCCchhHHHHhHhccCC---cc------------CCccccCceeEEECCCC
Q 030881           85 DQIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG---IF------------GDDIQWNFAKFLVDKNG  144 (170)
Q Consensus        85 ~~~~~~~~-----~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~---~~------------~~~i~~~p~~~lid~~G  144 (170)
                      +++++|++     .+++++||++.+.|.++.....+|.+.....++   ..            +..++|+|++||||++|
T Consensus       108 ~~i~~f~~~~~~~~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~G  187 (215)
T 2i3y_A          108 KEILPGLKYVRPGGGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDG  187 (215)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTTS
T ss_pred             HHHHHHHHhccchhccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCCC
Confidence            99999996     278999999966666677666677776544332   11            13578899999999999


Q ss_pred             cEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          145 QVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       145 ~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      +|++++.|..+++++++.|+++|++
T Consensus       188 ~vv~~~~g~~~~~~l~~~I~~ll~~  212 (215)
T 2i3y_A          188 IPVMRWSHRATVSSVKTDILAYLKQ  212 (215)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHGGG
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            9999999888899999999999875

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=100.00  E-value=5.4e-35  Score=209.52  Aligned_cols=164  Identities=37%  Similarity=0.660  Sum_probs=139.4

Q ss_pred             ccCCcccccceeeCCC-CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            6 IQNPESIFDLSVKDAR-GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~-g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ...+.++|+|++.+.+ |+.+++++++||++||+||++||++|+.++|.|++++++|+++|++||+|++|+++..++++.
T Consensus        20 ~~~~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g~~vv~v~~d~~~~~e~d~~   99 (208)
T 2f8a_A           20 FQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKN   99 (208)
T ss_dssp             --CCCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCH
T ss_pred             hhhcCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCCeEEEEEECCcccccCCCCH
Confidence            4578899999999999 999999999999999999999999999999999999999999999999999997766677788


Q ss_pred             HHHHHHHH-----hhcCCCCCceEEeecCCCCchhHHHHhHhccCCc-------c------------CCccccCceeEEE
Q 030881           85 DQIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI-------F------------GDDIQWNFAKFLV  140 (170)
Q Consensus        85 ~~~~~~~~-----~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~-------~------------~~~i~~~p~~~li  140 (170)
                      +++++|++     .+++++||++.+.+.++.....+|.+.....++.       .            ...+.|+|++|||
T Consensus       100 ~~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tflI  179 (208)
T 2f8a_A          100 EEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLV  179 (208)
T ss_dssp             HHHHHHHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEE
T ss_pred             HHHHHHHHhcccccccccceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEEE
Confidence            99999996     3789999999666777776666677665433321       0            1257888999999


Q ss_pred             CCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          141 DKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       141 d~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      |++|+|++++.|..+++++++.|+++|++
T Consensus       180 D~~G~i~~~~~g~~~~~~l~~~I~~ll~~  208 (208)
T 2f8a_A          180 GPDGVPLRRYSRRFQTIDIEPDIEALLSQ  208 (208)
T ss_dssp             CTTSCEEEEECTTSCGGGGHHHHHHHHC-
T ss_pred             cCCCcEEEEeCCCCCHHHHHHHHHHHhhC
Confidence            99999999999989999999999999863

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=100.00  E-value=5.1e-35  Score=206.01  Aligned_cols=163  Identities=47%  Similarity=0.839  Sum_probs=140.1

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.++|.|++++++++++++++++|++|.++..++++
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~is~d~~~~~~~~~  100 (185)
T 2gs3_A           21 QSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS  100 (185)
T ss_dssp             GGGGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCTTTTCCCSC
T ss_pred             hhccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCCeEEEEEECcccCCCCCCC
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999776667778


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccC--CccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW--GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                      .+++++|++ +++++||++.+.|.++.....+|.+.....+  +..+..+.|+|++||||++|+|++++.|..+++++.+
T Consensus       101 ~~~~~~~~~-~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  179 (185)
T 2gs3_A          101 NEEIKEFAA-GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  179 (185)
T ss_dssp             HHHHHHHHH-HTTCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTSCGGGGGG
T ss_pred             HHHHHHHHH-HcCCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCCCHHHHHH
Confidence            899999996 8899999986557777666656665544333  3333457778899999999999999999888999999


Q ss_pred             HHHHHh
Q 030881          162 DIKKLL  167 (170)
Q Consensus       162 ~l~~~l  167 (170)
                      .|+++|
T Consensus       180 ~i~~lL  185 (185)
T 2gs3_A          180 DLPHYF  185 (185)
T ss_dssp             GHHHHC
T ss_pred             HHHHhC
Confidence            988875

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=100.00  E-value=6.9e-35  Score=204.44  Aligned_cols=160  Identities=38%  Similarity=0.734  Sum_probs=137.4

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ....|.++|+|++.|.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++|+.+++|++|+|...++++.
T Consensus        11 ~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~~~vi~is~d~~~~~~~d~~   90 (180)
T 3kij_A           11 LKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPS   90 (180)
T ss_dssp             CCCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTSEEEEEEECCCSTTCCCSCH
T ss_pred             hcCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCCeEEEEEECCccccCCCCCH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999998888888899


Q ss_pred             HHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      +++++|+++.++.+||++.+.+..+.....++.+.....+    ....|++++||||++|+|++++.|..+++++.+.|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~p~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~  166 (180)
T 3kij_A           91 KEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSK----KEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIA  166 (180)
T ss_dssp             HHHHHHHHHHHCCCSCBBCCCCCSSTTCCHHHHHHHHHHT----CCCSSTTCEEEECTTSCEEEEECTTCCGGGTHHHHH
T ss_pred             HHHHHHHHHhcCCCCceeeeeeccCccccHHHHHHHhcCC----CCccccceEEEECCCCCEEEEECCCCCHHHHHHHHH
Confidence            9999999832899999986566666666556666654433    233345569999999999999999889888888887


Q ss_pred             HHhc
Q 030881          165 KLLG  168 (170)
Q Consensus       165 ~~l~  168 (170)
                      ++|+
T Consensus       167 ~lL~  170 (180)
T 3kij_A          167 ALVR  170 (180)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=206.52  Aligned_cols=161  Identities=37%  Similarity=0.627  Sum_probs=136.1

Q ss_pred             cCCcccccceeeCCC-CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            7 QNPESIFDLSVKDAR-GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~-g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      .....+|+|++.|.+ |+.++|++++||++||+||++||++| .++|.|++++++|+++|++||+|++|+|...++++.+
T Consensus        12 ~~~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g~~vlgvs~d~f~~~e~~~~~   90 (207)
T 2r37_A           12 GISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFGLVILGFPCNQFGKQEPGENS   90 (207)
T ss_dssp             ---CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGTEEEEEEECCCBTTCCCSCHH
T ss_pred             cccCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCCEEEEEEECcccCcCCCCCHH
Confidence            456789999999999 99999999999999999999999999 7999999999999999999999999988777778889


Q ss_pred             HHHHHHH-----hhcCCCCCceEEeecCCCCchhHHHHhHhccCC---cc------------CCccccCceeEEECCCCc
Q 030881           86 QIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG---IF------------GDDIQWNFAKFLVDKNGQ  145 (170)
Q Consensus        86 ~~~~~~~-----~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~---~~------------~~~i~~~p~~~lid~~G~  145 (170)
                      ++++|++     .+++++||++.+.+.++.....+|.+.....++   ..            +..+.|+|++||||++|+
T Consensus        91 ~i~~f~~~~~~~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~G~  170 (207)
T 2r37_A           91 EILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGI  170 (207)
T ss_dssp             HHHHHHHHTSSCTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTTSC
T ss_pred             HHHHHHHhcchhhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCCCc
Confidence            9999996     278999999966666676666667776544332   11            135788899999999999


Q ss_pred             EEEEeCCCCCchHHHHHHHHHhc
Q 030881          146 VVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       146 i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      |++++.|..+++++++.|+++|+
T Consensus       171 i~~~~~g~~~~~~l~~~I~~ll~  193 (207)
T 2r37_A          171 PIMRWHHRTTVSNVKMDILSYMR  193 (207)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHh
Confidence            99999988889999999999885

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=100.00  E-value=1.4e-34  Score=203.34  Aligned_cols=163  Identities=47%  Similarity=0.851  Sum_probs=139.4

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.++..++++
T Consensus        19 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~   98 (183)
T 2obi_A           19 DDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGS   98 (183)
T ss_dssp             CCGGGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSC
T ss_pred             cCCcccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCCeEEEEEECCCCCCCCCCC
Confidence            45678999999999999999999999999999999999999999999999999999999989999999999776667788


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccC--CccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKW--GIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                      .+++++|++ +++++||++.+.|..+.....+|.+.....+  +..+..+.+.|++||||++|+|++++.|..+++++.+
T Consensus        99 ~~~~~~~~~-~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  177 (183)
T 2obi_A           99 NEEIKEFAA-GYNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEK  177 (183)
T ss_dssp             HHHHHHHHH-TTTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTSCTHHHHT
T ss_pred             HHHHHHHHH-HcCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCCCHHHHHH
Confidence            999999997 8899999985447777666666666554333  3333457778899999999999999999888888888


Q ss_pred             HHHHHh
Q 030881          162 DIKKLL  167 (170)
Q Consensus       162 ~l~~~l  167 (170)
                      .|+++|
T Consensus       178 ~i~~lL  183 (183)
T 2obi_A          178 DLPHYF  183 (183)
T ss_dssp             TSGGGC
T ss_pred             HHHHhC
Confidence            887764

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-34  Score=201.58  Aligned_cols=161  Identities=39%  Similarity=0.716  Sum_probs=135.2

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.++|.|++++++++++++.+++|++|+++..++++
T Consensus        21 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~v~vv~vs~d~~~~~e~~~  100 (181)
T 2p31_A           21 QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDS  100 (181)
T ss_dssp             ------CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTCCCSC
T ss_pred             CcCCcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCCEEEEEEECcCCCCCCCCC
Confidence            34678999999999999999999999999999999999999999999999999999999999999999998766666678


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+++++|+++.++++||++.+.|.++.....++.+.....|    ..+.|+.++||||++|+|++++.|..+++++.+.|
T Consensus       101 ~~~~~~~~~~~~~~~~p~~~~~d~~g~~~~~~~~~~~~~~P----~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i  176 (181)
T 2p31_A          101 NKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSG----KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQI  176 (181)
T ss_dssp             HHHHHHHHHHHHCCCSCBBCCCCCSSTTSCHHHHHHHHHHS----CCCCSTTCEEEECTTSCEEEEECTTSCHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCceeEeecccCCccchhhhhhhhhcCC----CccccceeEEEEcCCCCEEEEeCCCCCHHHHHHHH
Confidence            99999999832899999996556666666656666666666    34556668999999999999999988999999999


Q ss_pred             HHHhc
Q 030881          164 KKLLG  168 (170)
Q Consensus       164 ~~~l~  168 (170)
                      +++|+
T Consensus       177 ~~ll~  181 (181)
T 2p31_A          177 TALVR  181 (181)
T ss_dssp             HTTCC
T ss_pred             HHHhC
Confidence            98874

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=100.00  E-value=3.7e-34  Score=202.36  Aligned_cols=164  Identities=48%  Similarity=0.867  Sum_probs=139.1

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      .+..++++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.++..++++.
T Consensus        21 ~~~~~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~  100 (190)
T 2vup_A           21 HMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTVLAFPCNQFGGQEPGNE  100 (190)
T ss_dssp             ---CCCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECCCSTTCCCSCH
T ss_pred             cCCCCCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcCccCCCCCCCH
Confidence            36789999999999999999999999999999999999999999999999999999999899999999997766677789


Q ss_pred             HHHHHHH-HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCC-ccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           85 DQIADFV-CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD-DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        85 ~~~~~~~-~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +++++|+ + +++.+||++.+.|..+.....++.+.....++..+. .+.|+|++||||++|+|++++.|..+++++.+.
T Consensus       101 ~~~~~~~~~-~~~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~  179 (190)
T 2vup_A          101 EEIKEFVCT-KFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKK  179 (190)
T ss_dssp             HHHHHHHHH-HHCCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEEECTTCCHHHHHHH
T ss_pred             HHHHHHHHH-hcCCCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEEECCCCCHHHHHHH
Confidence            9999999 6 789999999655777776665666654433333222 355777999999999999999998899999999


Q ss_pred             HHHHhcC
Q 030881          163 IKKLLGL  169 (170)
Q Consensus       163 l~~~l~~  169 (170)
                      |+++|++
T Consensus       180 i~~ll~~  186 (190)
T 2vup_A          180 LIPLLES  186 (190)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhh
Confidence            9999864

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-33  Score=195.51  Aligned_cols=161  Identities=50%  Similarity=0.888  Sum_probs=120.0

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      .+..+|+|++.|.+|+.+++++++||++||+||++||++|+ ++|.|++++++++++++.+++|++|+++..++++.+.+
T Consensus         8 ~~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~   86 (171)
T 3cmi_A            8 HMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEI   86 (171)
T ss_dssp             --CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGTEEEEEEEECSCC----------
T ss_pred             chhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCCeEEEEEECcccCCCCCCCHHHH
Confidence            46789999999999999999999999999999999999999 99999999999999999999999986655556788899


Q ss_pred             HHHH-HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCC-ccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881           88 ADFV-CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGD-DIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus        88 ~~~~-~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                      ++|+ + +++++||++.+.|..+.....++++......+..+. .++|++++||||++|+|++++.|..+++++.+.|++
T Consensus        87 ~~~~~~-~~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~i~~  165 (171)
T 3cmi_A           87 AQFCQL-NYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEE  165 (171)
T ss_dssp             ---------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEEECTTSCGGGGHHHHHH
T ss_pred             HHHHHh-ccCCCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEEeCCCCCHHHHHHHHHH
Confidence            9999 6 889999999655666665655666554333322211 244566999999999999999998899999999999


Q ss_pred             HhcCC
Q 030881          166 LLGLS  170 (170)
Q Consensus       166 ~l~~~  170 (170)
                      +|+++
T Consensus       166 ll~~~  170 (171)
T 3cmi_A          166 LLKEV  170 (171)
T ss_dssp             HHTCC
T ss_pred             HHHhc
Confidence            99764

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.97  E-value=2.1e-31  Score=182.42  Aligned_cols=149  Identities=19%  Similarity=0.302  Sum_probs=123.9

Q ss_pred             cCCcccccceeeCC--CCCeecCCCCCCcEEEEEEecCCCCCChhh-HHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            7 QNPESIFDLSVKDA--RGHEVDLSTYKGKVLLIVNVASKCGMTNSN-YIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         7 ~~g~~~p~f~l~~~--~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      +.|.++|+|++.+.  +|+.+++++++||++||+||++||++|+.+ +|.|+++++++++.++.+++|++| +...+.++
T Consensus         1 s~g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~   79 (158)
T 3eyt_A            1 SNAMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHTV-FEHHEAMT   79 (158)
T ss_dssp             CCCEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSC
T ss_pred             CCCCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEec-ccccccCC
Confidence            36899999999994  789999999999999999999999999997 999999999999889999999987 33333568


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCc-hhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHA-SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      .+.+++|++ +++++||++  .|..+... ..+...          +++.+.|++||||++|+|++++.|..+.+++.+.
T Consensus        80 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~~~~~~~----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~  146 (158)
T 3eyt_A           80 PISLKAFLH-EYRIKFPVG--VDQPGDGAMPRTMAA----------YQMRGTPSLLLIDKAGDLRAHHFGDVSELLLGAE  146 (158)
T ss_dssp             HHHHHHHHH-HTTCCSCEE--EECCCSSSSCHHHHH----------TTCCSSSEEEEECTTSEEEEEEESCCCHHHHHHH
T ss_pred             HHHHHHHHH-HcCCCceEE--EcCccchhhHHHHHH----------cCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHH
Confidence            999999997 889999988  45444211 011111          3345556999999999999999999999999999


Q ss_pred             HHHHhcC
Q 030881          163 IKKLLGL  169 (170)
Q Consensus       163 l~~~l~~  169 (170)
                      |+++|++
T Consensus       147 i~~ll~~  153 (158)
T 3eyt_A          147 IATLLGE  153 (158)
T ss_dssp             HHHHHTS
T ss_pred             HHHHhcc
Confidence            9999864

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.97  E-value=4e-32  Score=186.58  Aligned_cols=149  Identities=20%  Similarity=0.232  Sum_probs=108.9

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      +++..|+++|+|+|.+.+|+.++|++++||++||+|| ++||++|+.+++.|+++++++++.++.+++||.|        
T Consensus         2 ~~l~vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~~~~v~vs~d--------   73 (157)
T 4g2e_A            2 HMVEIGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVNAVVLGISVD--------   73 (157)
T ss_dssp             CCCCTTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCSSEEEEEESS--------
T ss_pred             CcCCCCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccCceEeeeccc--------
Confidence            4688999999999999999999999999999999999 8999999999999999999999999999999986        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-----CCch
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-----TSLL  157 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-----~~~~  157 (170)
                      +.+.+++|++ +++++||++  .|.++..+. .|+.. ...++.. ...-..|++||||++|+|++.+.+.     .+.+
T Consensus        74 ~~~~~~~~~~-~~~~~~p~l--~D~~~~v~~-~ygv~-~~~~~~~-~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~~  147 (157)
T 4g2e_A           74 PPFSNKAFKE-HNKLNFTIL--SDYNREVVK-KYNVA-WEFPALP-GYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYD  147 (157)
T ss_dssp             CHHHHHHHHH-HTTCCSEEE--ECTTSHHHH-HTTCE-EECTTST-TCEEECEEEEEECTTSBEEEEEEESSTTCCCCHH
T ss_pred             chhHHHHHHH-HcCCcEEEE--EcCCcHHHH-HcCCc-cccccCC-CcceeeeeEEEECCCCEEEEEEECCCCCCCCCHH
Confidence            6888999987 889999999  565543322 11110 0011111 1112345899999999999986442     2445


Q ss_pred             HHHHHHHHH
Q 030881          158 SLEHDIKKL  166 (170)
Q Consensus       158 ~l~~~l~~~  166 (170)
                      ++.+.|++|
T Consensus       148 eil~~l~~L  156 (157)
T 4g2e_A          148 EIEKVVKSL  156 (157)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            566666543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.97  E-value=5.1e-31  Score=180.75  Aligned_cols=148  Identities=14%  Similarity=0.255  Sum_probs=124.8

Q ss_pred             CCcccccceeeC-CCCCeecCCCCCCcEEEEEEecCCCCCChhh-HHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            8 NPESIFDLSVKD-ARGHEVDLSTYKGKVLLIVNVASKCGMTNSN-YIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         8 ~g~~~p~f~l~~-~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      .|.++|+|++.+ .+|+.+++++++||++||+||++||++|..+ ++.|++++++++++++.+++|+++ ++..+.++.+
T Consensus         5 ~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~-~~~~~~~~~~   83 (160)
T 3lor_A            5 DNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSV-FEHHDVMTPE   83 (160)
T ss_dssp             TTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECC-CSCGGGSCHH
T ss_pred             CCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEecc-ccccccCCHH
Confidence            789999999999 8999999999999999999999999999995 999999999999989999999997 4444456899


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCC--CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGE--HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~--~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+++|++ +++.+||++  .|..+.  ....+...          +++...|++||||++|+|++++.|..+.+++.+.|
T Consensus        84 ~~~~~~~-~~~~~~~~~--~d~~~~~~~~~~~~~~----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i  150 (160)
T 3lor_A           84 ALKVFID-EFGIKFPVA--VDMPREGQRIPSTMKK----------YRLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLL  150 (160)
T ss_dssp             HHHHHHH-HTTCCSCEE--EECCCTTCSSCHHHHH----------TTCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHH-HcCCCCcEE--ECCccccchhhhHHHh----------cccCccceEEEECCCCcEEEEecCcCCHHHHHHHH
Confidence            9999997 889999988  454433  11111111          23445569999999999999999999999999999


Q ss_pred             HHHhcC
Q 030881          164 KKLLGL  169 (170)
Q Consensus       164 ~~~l~~  169 (170)
                      +++|++
T Consensus       151 ~~ll~~  156 (160)
T 3lor_A          151 GSLLSE  156 (160)
T ss_dssp             HHHHTC
T ss_pred             HHHHhc
Confidence            999975

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.97  E-value=2.3e-30  Score=180.00  Aligned_cols=156  Identities=16%  Similarity=0.250  Sum_probs=120.9

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~   82 (170)
                      .+.|.++|+|+|.|.+|+++++++++||++||+||+|||+ +|...++.|.++++.+++.  ++++|+||+|+    +.|
T Consensus         6 ~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp----~~D   81 (170)
T 4hde_A            6 KPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDP----DLD   81 (170)
T ss_dssp             SCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT----TTC
T ss_pred             cCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCc----ccc
Confidence            4578899999999999999999999999999999999998 8999999999999998765  49999999984    457


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhH----hccCCccCCccccCceeEEECCCCcEEEEeCCC--CCc
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLK----SGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT--TSL  156 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~--~~~  156 (170)
                      +++.+++|++ +++.+++.+  ....+...+.+.....    ........+.+.|.|++||||++|+|+..+.|.  .+.
T Consensus        82 tp~~l~~y~~-~~~~~~~~~--~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~  158 (170)
T 4hde_A           82 KPENLKAFIQ-KFTEDTSNW--NLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGISNTPY  158 (170)
T ss_dssp             CHHHHHHHHT-TTCSCCTTE--EEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSSSCCH
T ss_pred             cHHHHHHHHH-HcCCCCCCc--eecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCCCCCH
Confidence            8999999997 888877765  2333333332222111    111111225677888999999999999988763  345


Q ss_pred             hHHHHHHHHHhc
Q 030881          157 LSLEHDIKKLLG  168 (170)
Q Consensus       157 ~~l~~~l~~~l~  168 (170)
                      +++.+.|++|++
T Consensus       159 ~~l~~~ik~Lle  170 (170)
T 4hde_A          159 EDIIRDMKRLAE  170 (170)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            678888988874

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=4.6e-30  Score=174.59  Aligned_cols=142  Identities=20%  Similarity=0.232  Sum_probs=119.9

Q ss_pred             ccccCCcccccceeeCCCCCeecCC--CCCCcEEEEEEecCCCCC--ChhhHHHHHHHHHHh-ccCCcEEEEeecCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLS--TYKGKVLLIVNVASKCGM--TNSNYIELSQLYDKY-KDQGLEILAFPCNQFGE   78 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~--~~~gk~~lv~f~~~~C~~--C~~~~~~l~~~~~~~-~~~~v~~v~is~d~~~~   78 (170)
                      ..+..|+++|+|++.+.+|+.++++  +++||++||+||++||++  |+.++|.|+++++++ +++++.+++|++|.   
T Consensus         3 ~~l~~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~---   79 (150)
T 3fw2_A            3 AKSEIGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDV---   79 (150)
T ss_dssp             CTTSTTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCS---
T ss_pred             ccccCCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCC---
Confidence            4578999999999999999999999  999999999999999999  999999999999999 88889999999983   


Q ss_pred             CCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchH
Q 030881           79 EEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLS  158 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~  158 (170)
                          +.+.++++++ +++.+||.+  .|..+....-...           +++.+.|++||||++|+|++++.   +.++
T Consensus        80 ----~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~~~~~-----------~~v~~~P~~~lid~~G~i~~~~~---~~~~  138 (150)
T 3fw2_A           80 ----DKQQWKDAIK-RDTLDWEQV--CDFGGLNSEVAKQ-----------YSIYKIPANILLSSDGKILAKNL---RGEE  138 (150)
T ss_dssp             ----CHHHHHHHHH-HTTCCSEEE--CCSCGGGCHHHHH-----------TTCCSSSEEEEECTTSBEEEESC---CHHH
T ss_pred             ----CHHHHHHHHH-HhCCCceEE--EcCcccchHHHHH-----------cCCCccCeEEEECCCCEEEEccC---CHHH
Confidence                6789999997 889999988  4543222221112           34555669999999999999963   7788


Q ss_pred             HHHHHHHHhcC
Q 030881          159 LEHDIKKLLGL  169 (170)
Q Consensus       159 l~~~l~~~l~~  169 (170)
                      +.+.|++++++
T Consensus       139 l~~~l~~ll~~  149 (150)
T 3fw2_A          139 LKKKIENIVEE  149 (150)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.97  E-value=1.9e-30  Score=187.08  Aligned_cols=149  Identities=19%  Similarity=0.231  Sum_probs=124.5

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcE-EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKV-LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~-~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|+++|+|++.+.+|+.+++++++||+ +||+||++||++|+.+++.|++++++++++|+.+|+|++|++...+.+
T Consensus        30 ~~l~~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~d  109 (218)
T 3u5r_E           30 NSITLGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAINSNDAQAFPEE  109 (218)
T ss_dssp             CCCCTTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECSCTTTCGGG
T ss_pred             CcCCCCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCcccccccC
Confidence            4578999999999999999999999999995 999999999999999999999999999999999999999876665567


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC---------CC
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY---------PT  153 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~---------~~  153 (170)
                      +.+.+++|++ +++++||++  .|..+....   .|           ++...|++||||++|+|+++..         +.
T Consensus       110 ~~~~~~~~~~-~~~~~~~~l--~D~~~~~~~---~~-----------~v~~~P~~~liD~~G~i~~~g~~d~~~~~~~~~  172 (218)
T 3u5r_E          110 TLERVGAEVK-AYGYGFPYL--KDASQSVAK---AY-----------GAACTPDFFLYDRERRLVYHGQFDDARPGNGKD  172 (218)
T ss_dssp             SHHHHHHHHH-HHTCCSCEE--ECTTCHHHH---HH-----------TCCEESEEEEECTTCBEEEEECSSSCCTTSCCC
T ss_pred             CHHHHHHHHH-HhCCCccEE--ECCccHHHH---Hc-----------CCCCCCeEEEECCCCcEEEeccccccccccccc
Confidence            9999999997 889999998  554332221   22           3444459999999999998743         23


Q ss_pred             CCchHHHHHHHHHhcC
Q 030881          154 TSLLSLEHDIKKLLGL  169 (170)
Q Consensus       154 ~~~~~l~~~l~~~l~~  169 (170)
                      .+.+++.+.|++++++
T Consensus       173 ~~~~~l~~~i~~ll~~  188 (218)
T 3u5r_E          173 VTGADLRAAVDAVLKG  188 (218)
T ss_dssp             CCCHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHcC
Confidence            3467899999998853

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.97  E-value=3.1e-30  Score=174.10  Aligned_cols=137  Identities=12%  Similarity=0.171  Sum_probs=107.2

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|+++|+|++ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|+++++.+++|++|.       +
T Consensus         5 ~~l~~G~~~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~-------~   76 (143)
T 4fo5_A            5 EGVNPGDLAPRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSISMDE-------K   76 (143)
T ss_dssp             BSSSTTSBCCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCS-------C
T ss_pred             cccCCcccCCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccC-------C
Confidence            45789999999999 999999999999999999999999999999999999999999998899999999983       6


Q ss_pred             hHHHHHHHHhhcCCCC-CceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           84 NDQIADFVCTRFKSEF-PIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~-p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      .++++++++ +++++| +.+  .|..+........           +++.+.|++||||++|+|++++.   ..+++.+.
T Consensus        77 ~~~~~~~~~-~~~~~~~~~~--~d~~~~~~~~~~~-----------~~v~~~P~~~lid~~G~i~~~~~---~~~~l~~~  139 (143)
T 4fo5_A           77 ESIFTETVK-IDKLDLSTQF--HEGLGKESELYKK-----------YDLRKGFKNFLINDEGVIIAANV---TPEKLTEI  139 (143)
T ss_dssp             HHHHHHHHH-HHTCCGGGEE--ECTTGGGSHHHHH-----------TTGGGCCCEEEECTTSBEEEESC---CHHHHHHH
T ss_pred             HHHHHHHHH-HhCCCCceee--ecccccchHHHHH-----------cCCCCCCcEEEECCCCEEEEccC---CHHHHHHH
Confidence            788999997 779999 666  4543322221112           23445559999999999999853   46667666


Q ss_pred             HHH
Q 030881          163 IKK  165 (170)
Q Consensus       163 l~~  165 (170)
                      |++
T Consensus       140 l~~  142 (143)
T 4fo5_A          140 LKA  142 (143)
T ss_dssp             HTC
T ss_pred             HHh
Confidence            654

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.97  E-value=3.7e-30  Score=173.28  Aligned_cols=137  Identities=14%  Similarity=0.167  Sum_probs=113.8

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHH---HHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQ---LYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~---~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+|.++|+|++.+.+|+.+++++++||++||+||++||++|+.++|.|.+   ++++++++++.+++|++|.       +
T Consensus         2 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~-------~   74 (142)
T 3ewl_A            2 NAGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDE-------N   74 (142)
T ss_dssp             CTTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSS-------C
T ss_pred             CCCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecC-------C
Confidence            57999999999999999999999999999999999999999999999998   9999998899999999973       7


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.+.++++ +++.+||++  .|..+....       ...     +++.+.|++||||++|+|++.   ..+.+++++.|
T Consensus        75 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~-------~~~-----~~v~~~P~~~lid~~G~i~~~---~~~~~~l~~~l  136 (142)
T 3ewl_A           75 REEWATKAV-YMPQGWIVG--WNKAGDIRT-------RQL-----YDIRATPTIYLLDGRKRVILK---DTSMEQLIDYL  136 (142)
T ss_dssp             HHHHHHHHT-TSCTTCEEE--ECTTCHHHH-------TTC-----SCCCSSSEEEEECTTCBEEEC---SCCHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCCccee--eCCccchhh-------HHH-----cCCCCCCeEEEECCCCCEEec---CCCHHHHHHHH
Confidence            888999997 889999988  554432210       001     345666799999999999985   46788898888


Q ss_pred             HHHhc
Q 030881          164 KKLLG  168 (170)
Q Consensus       164 ~~~l~  168 (170)
                      +++.+
T Consensus       137 ~~~~~  141 (142)
T 3ewl_A          137 ATQAG  141 (142)
T ss_dssp             HC---
T ss_pred             HHHcc
Confidence            87654

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.97  E-value=4.9e-30  Score=179.88  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=123.2

Q ss_pred             ccCCcccccceeeCC--CCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCc------EEEEeecCCCC
Q 030881            6 IQNPESIFDLSVKDA--RGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGL------EILAFPCNQFG   77 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~--~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v------~~v~is~d~~~   77 (170)
                      ...|.++|+|++.+.  +|+.+++++++||++||+||++||++|+.+++.|++++++++++++      .+++|++|.  
T Consensus        31 ~~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~--  108 (183)
T 3lwa_A           31 EADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRD--  108 (183)
T ss_dssp             GGGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSC--
T ss_pred             cccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCC--
Confidence            567899999999999  9999999999999999999999999999999999999999999889      999999872  


Q ss_pred             CCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCch
Q 030881           78 EEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLL  157 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~  157 (170)
                          ++.+.+++|++ +++++||++  .|..+.....+.         .  +.+...|++||||++|+|++++.|..+.+
T Consensus       109 ----~~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~~~~---------~--~~v~~~P~~~lid~~G~i~~~~~g~~~~~  170 (183)
T 3lwa_A          109 ----YSRDIAQDFVT-DNGLDYPSI--YDPPFMTAASLG---------G--VPASVIPTTIVLDKQHRPAAVFLREVTSK  170 (183)
T ss_dssp             ----CCHHHHHHHHH-HTTCCSCEE--ECTTCGGGGGTT---------T--CCTTCCSEEEEECTTSCEEEEECSCCCHH
T ss_pred             ----CCHHHHHHHHH-HcCCCccEE--ECCcchHHHHhc---------c--CCCCCCCeEEEECCCCcEEEEEcCCCCHH
Confidence                26889999997 889999998  565544333210         0  23455569999999999999999988999


Q ss_pred             HHHHHHHHHhcC
Q 030881          158 SLEHDIKKLLGL  169 (170)
Q Consensus       158 ~l~~~l~~~l~~  169 (170)
                      ++.+.|+++|++
T Consensus       171 ~l~~~l~~ll~~  182 (183)
T 3lwa_A          171 DVLDVALPLVDE  182 (183)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999999875

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.97  E-value=3.8e-32  Score=187.97  Aligned_cols=151  Identities=17%  Similarity=0.252  Sum_probs=116.5

Q ss_pred             cccccCCcccccceeeCCCCCeecCCCC--CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            3 SQFIQNPESIFDLSVKDARGHEVDLSTY--KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         3 ~~~~~~g~~~p~f~l~~~~g~~~~l~~~--~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      ..++..|+++|+|+|.|.+|+.++|+++  +||++||+|| ++|||+|..+++.|++++++|+++|+.+++||.|     
T Consensus         2 ~gml~vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~v~vv~is~d-----   76 (164)
T 4gqc_A            2 KGLVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD-----   76 (164)
T ss_dssp             --CCCTTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSSSEEEEEESS-----
T ss_pred             CCcccCCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccCceEEEecCC-----
Confidence            3468899999999999999999999998  8999999988 9999999999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-----C
Q 030881           80 EPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-----T  154 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-----~  154 (170)
                         +.+.+++|.+ +++++||++  .|.++..+. .|+.......+.   .....|++||||++|+|++.+.+.     .
T Consensus        77 ---~~~~~~~~~~-~~~~~fp~l--~D~~~~v~~-~ygv~~~~~~~~---~~~~~p~tflID~~G~I~~~~~~~~~~~~~  146 (164)
T 4gqc_A           77 ---SPWCLKKFKD-ENRLAFNLL--SDYNREVIK-LYNVYHEDLKGL---KMVAKRAVFIVKPDGTVAYKWVTDNPLNEP  146 (164)
T ss_dssp             ---CHHHHHHHHH-HTTCCSEEE--ECTTSHHHH-HTTCEEEEETTE---EEEECCEEEEECTTSBEEEEEECSCTTCCC
T ss_pred             ---CHHHHHHHHH-hcCccccee--ecCchHHHH-HcCCcccccccC---cCCeeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence               7888999987 889999999  666544322 121110001111   111245899999999999986442     2


Q ss_pred             CchHHHHHHHHHhc
Q 030881          155 SLLSLEHDIKKLLG  168 (170)
Q Consensus       155 ~~~~l~~~l~~~l~  168 (170)
                      +.+++.+.|++++.
T Consensus       147 ~~~eil~~l~~l~~  160 (164)
T 4gqc_A          147 DYDEVVREANKIAG  160 (164)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc
Confidence            45677777777654

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.97  E-value=8e-30  Score=173.39  Aligned_cols=139  Identities=19%  Similarity=0.336  Sum_probs=120.1

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~   86 (170)
                      +.|+++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.       +.+.
T Consensus         1 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~-------~~~~   73 (151)
T 2f9s_A            1 SEGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGE-------SKIA   73 (151)
T ss_dssp             -CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESC-------CHHH
T ss_pred             CCCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------CHHH
Confidence            368999999999999999999999999999999999999999999999999999998889999999973       6788


Q ss_pred             HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881           87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                      +++|++ +++.+||++  .|.......   .           +++.+.|++|+||++|++++.+.|..+.+++.+.|+++
T Consensus        74 ~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~G~~~~~~l~~~l~~l  136 (151)
T 2f9s_A           74 VHNFMK-SYGVNFPVV--LDTDRQVLD---A-----------YDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMNLI  136 (151)
T ss_dssp             HHHHHH-HHTCCSCEE--EETTSHHHH---H-----------TTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHHH-HcCCCceEE--ECCchHHHH---h-----------cCCCCCCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHH
Confidence            999997 789999998  454322111   1           34555569999999999999999988999999999999


Q ss_pred             hcC
Q 030881          167 LGL  169 (170)
Q Consensus       167 l~~  169 (170)
                      ++.
T Consensus       137 l~~  139 (151)
T 2f9s_A          137 KPG  139 (151)
T ss_dssp             SCC
T ss_pred             Hhh
Confidence            864

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.97  E-value=7.2e-30  Score=177.35  Aligned_cols=154  Identities=18%  Similarity=0.278  Sum_probs=122.6

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEE   80 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~   80 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||+ +|+.+++.|+++++++++++  +.+|+|++|.    +
T Consensus         5 ~~l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~----~   80 (174)
T 1xzo_A            5 IKDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP----E   80 (174)
T ss_dssp             CCSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT----T
T ss_pred             CcCccccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCC----C
Confidence            347789999999999999999999999999999999999999 99999999999999999876  9999999973    2


Q ss_pred             CCChHHHHHHHHhhcCCCC---CceEEeecCCCCchhHHHHhHh-------ccCCccCCccccCceeEEECCCCcEEEEe
Q 030881           81 PGSNDQIADFVCTRFKSEF---PIFEKIDVNGEHASPLYKLLKS-------GKWGIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~---p~~~~~d~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                      .++.+.+++|++ +++.+|   |++  .|......   ..+...       ..++.  +.+.+.|++||||++|+|++++
T Consensus        81 ~d~~~~~~~~~~-~~~~~~~~~~~l--~d~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~p~~~lid~~G~i~~~~  152 (174)
T 1xzo_A           81 NDKPKQLKKFAA-NYPLSFDNWDFL--TGYSQSEI---EEFALKSFKAIVKKPEGE--DQVIHQSSFYLVGPDGKVLKDY  152 (174)
T ss_dssp             TCCHHHHHHHHT-TSCCCGGGEEEE--BCSCHHHH---HHHHHHHHCCCCCCCSSC--CSCCSCCEEEEECTTSEEEEEE
T ss_pred             CCCHHHHHHHHH-HcCCCCcceEEE--eCCCHHHH---HHHHHhhcCeeEeecCCC--CeeeeeeEEEEECCCCeEEEEE
Confidence            357889999997 889988   545  33222111   112110       01111  3456677999999999999998


Q ss_pred             CCCC--CchHHHHHHHHHhcC
Q 030881          151 YPTT--SLLSLEHDIKKLLGL  169 (170)
Q Consensus       151 ~~~~--~~~~l~~~l~~~l~~  169 (170)
                      .|..  +.+++.+.|++++++
T Consensus       153 ~g~~~~~~~~l~~~l~~ll~~  173 (174)
T 1xzo_A          153 NGVENTPYDDIISDVKSASTL  173 (174)
T ss_dssp             ESSSSCCHHHHHHHHHHHTCC
T ss_pred             cCCCCCCHHHHHHHHHHHHhc
Confidence            8865  468899999999875

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.97  E-value=5.7e-30  Score=176.38  Aligned_cols=151  Identities=15%  Similarity=0.183  Sum_probs=114.6

Q ss_pred             ccccCCcccccce--eeCCCCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            4 QFIQNPESIFDLS--VKDARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         4 ~~~~~g~~~p~f~--l~~~~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      ..+..|+++|+|+  +.+.+|+++++++++||++||+||+ +||++|+.+++.|++++++++++|+.+++|+.|      
T Consensus         5 ~~l~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d------   78 (163)
T 3gkn_A            5 TDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRD------   78 (163)
T ss_dssp             CCCCCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESS------
T ss_pred             cccccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCC------
Confidence            3478999999999  9999999999999999999999997 999999999999999999999999999999986      


Q ss_pred             CCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccC-CccccCceeEEECCCCcEEEEeCCCCCc---
Q 030881           81 PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSL---  156 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~i~~~p~~~lid~~G~i~~~~~~~~~~---  156 (170)
                        +.+.+++|++ +++.+||++  .|..+....   .|......+..| ....+.|++||||++|+|++.+.+....   
T Consensus        79 --~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~~~~~~~~~  150 (163)
T 3gkn_A           79 --SVKSHDNFCA-KQGFAFPLV--SDGDEALCR---AFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHA  150 (163)
T ss_dssp             --CHHHHHHHHH-HHCCSSCEE--ECTTCHHHH---HTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEECSCCSTTHH
T ss_pred             --CHHHHHHHHH-HhCCCceEE--ECCcHHHHH---HhCCccccccccccccCcceEEEEECCCCeEEEEEcCCCcccCH
Confidence              7899999997 789999999  554432221   111111000000 0000155999999999999998654433   


Q ss_pred             hHHHHHHHHHhc
Q 030881          157 LSLEHDIKKLLG  168 (170)
Q Consensus       157 ~~l~~~l~~~l~  168 (170)
                      +++.+.|+++.+
T Consensus       151 ~~il~~l~~l~~  162 (163)
T 3gkn_A          151 DAVLAALKAHAK  162 (163)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhc
Confidence            335555555543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.97  E-value=3.3e-30  Score=177.48  Aligned_cols=129  Identities=16%  Similarity=0.200  Sum_probs=106.5

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcE-EEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKV-LLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~-~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      +..|+++|+|++.+.+|+.+++++++||+ +||+|| ++||++|+.+++.|++++++++++|+.+++|+.|        +
T Consensus         2 l~~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d--------~   73 (161)
T 3drn_A            2 VKVGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD--------D   73 (161)
T ss_dssp             CCTTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESC--------C
T ss_pred             CCCCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCC--------C
Confidence            67899999999999999999999999997 999999 9999999999999999999999999999999986        6


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS  155 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~  155 (170)
                      .+.+++|++ +++++||++  .|.......   .|....       ..-+.|++||||++|+|++.+.|...
T Consensus        74 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~~~v~~-------~~~~~P~~~lid~~G~i~~~~~g~~~  132 (161)
T 3drn_A           74 INSHKRFKE-KYKLPFILV--SDPDKKIRE---LYGAKG-------FILPARITFVIDKKGIIRHIYNSQMN  132 (161)
T ss_dssp             HHHHHHHHH-HTTCCSEEE--ECTTSHHHH---HTTCCC-------SSSCCCEEEEECTTSBEEEEEECSSC
T ss_pred             HHHHHHHHH-HhCCCceEE--ECCcHHHHH---HcCCCC-------cCcccceEEEECCCCEEEEEEecCCC
Confidence            889999997 889999998  453322211   111111       01114599999999999999888433

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.96  E-value=1.8e-29  Score=170.12  Aligned_cols=135  Identities=15%  Similarity=0.102  Sum_probs=110.4

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHH---HHHHhccCCcEEEEeecCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQ---LYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~---~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      ....|.++|+|++.+.+|+.+++++++||++||+||++||++|+.++|.|++   +++++++.++.+++|+.|.      
T Consensus         4 ~~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~------   77 (142)
T 3eur_A            4 KNRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDE------   77 (142)
T ss_dssp             TTCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSS------
T ss_pred             hhcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCC------
Confidence            3678999999999999999999999999999999999999999999999999   9999998899999999973      


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                       +.+.++++++ +++.+|+.+  .|..+..     .  ....     +++...|++||||++|+|+++..+   .+++++
T Consensus        78 -~~~~~~~~~~-~~~~~~~~~--~d~~~~~-----~--~~~~-----~~v~~~P~~~lid~~G~i~~~~~~---~~~l~~  138 (142)
T 3eur_A           78 -ELDEWKKHRN-DFAKEWTNG--YDKELVI-----K--NKNL-----YDLRAIPTLYLLDKNKTVLLKDAT---LQKVEQ  138 (142)
T ss_dssp             -CHHHHHHHGG-GSCTTSEEE--ECTTCHH-----H--HTTC-----SCCTTCSEEEEECTTCBEEEEEEC---HHHHHH
T ss_pred             -CHHHHHHHHH-hcccccccc--cCccchh-----h--hhhh-----cCCCcCCeEEEECCCCcEEecCCC---HHHHHH
Confidence             6788889987 778888876  5543320     0  0011     345555699999999999999653   556666


Q ss_pred             HHH
Q 030881          162 DIK  164 (170)
Q Consensus       162 ~l~  164 (170)
                      .|+
T Consensus       139 ~l~  141 (142)
T 3eur_A          139 YLA  141 (142)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.96  E-value=1.1e-28  Score=169.78  Aligned_cols=147  Identities=16%  Similarity=0.203  Sum_probs=122.3

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|..+++.|++++++++++++.+++|++|.       +
T Consensus         6 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~-------~   78 (165)
T 3or5_A            6 QADARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNE-------Q   78 (165)
T ss_dssp             -CCCCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSC-------C
T ss_pred             hhhcCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCC-------C
Confidence            457899999999999999999999999999999999999999999999999999999999899999999873       6


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.+.+|++ +++++||++.  +..    .....|. ....    .++...|++||||++|+|++.+.|..+.+++.+.|
T Consensus        79 ~~~~~~~~~-~~~~~~~~~~--~~~----~~~~~~~-~~~~----~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  146 (165)
T 3or5_A           79 LPNVKNYMK-TQGIIYPVMM--ATP----ELIRAFN-GYID----GGITGIPTSFVIDASGNVSGVIVGPRSKADFDRIV  146 (165)
T ss_dssp             HHHHHHHHH-HHTCCSCEEE--CCH----HHHHHHH-TTST----TCSCSSSEEEEECTTSBEEEEECSCCCHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCCCceEe--cCH----HHHHHHh-hhhc----cCCCCCCeEEEECCCCcEEEEEcCCCCHHHHHHHH
Confidence            888999997 7899999883  322    1111111 1000    13555569999999999999999999999999999


Q ss_pred             HHHhcC
Q 030881          164 KKLLGL  169 (170)
Q Consensus       164 ~~~l~~  169 (170)
                      +++|++
T Consensus       147 ~~~l~~  152 (165)
T 3or5_A          147 KMALGA  152 (165)
T ss_dssp             HHHHC-
T ss_pred             HHHHhh
Confidence            999864

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.96  E-value=7e-29  Score=167.69  Aligned_cols=142  Identities=18%  Similarity=0.227  Sum_probs=117.6

Q ss_pred             ccccCCcccccceeeCCCCCeecCC--CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHh-ccCCcEEEEeecCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLS--TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY-KDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~--~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~-~~~~v~~v~is~d~~~~~~   80 (170)
                      ..+..|.++|+|++.+.+|+.++++  +++||++||+||++||++|+.+++.++++++++ +++++.+++|++|.     
T Consensus         3 ~~~~~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~-----   77 (148)
T 3fkf_A            3 AKVTVGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDI-----   77 (148)
T ss_dssp             --CCTTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCS-----
T ss_pred             ccccCCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCC-----
Confidence            4578999999999999999999999  999999999999999999999999999999999 88889999999974     


Q ss_pred             CCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHH
Q 030881           81 PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE  160 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~  160 (170)
                        +.+.+.++.+ +++.+||++  .+..+........           +++.+.|++++||++|+|++.+.   +.+++.
T Consensus        78 --~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~~~~~-----------~~v~~~P~~~lid~~G~i~~~~~---~~~~l~  138 (148)
T 3fkf_A           78 --DREAWETAIK-KDTLSWDQV--CDFTGLSSETAKQ-----------YAILTLPTNILLSPTGKILARDI---QGEALT  138 (148)
T ss_dssp             --CHHHHHHHHH-HTTCCSEEE--CCSCGGGCHHHHH-----------TTCCSSSEEEEECTTSBEEEESC---CHHHHH
T ss_pred             --CHHHHHHHHH-HcCCCceEE--EccCCcchHHHHh-----------cCCCCcCEEEEECCCCeEEEecC---CHHHHH
Confidence              6789999997 889999988  4543222221112           34555669999999999999964   788899


Q ss_pred             HHHHHHhcC
Q 030881          161 HDIKKLLGL  169 (170)
Q Consensus       161 ~~l~~~l~~  169 (170)
                      +.|+++|++
T Consensus       139 ~~l~~ll~~  147 (148)
T 3fkf_A          139 GKLKELLKT  147 (148)
T ss_dssp             HHHHHHC--
T ss_pred             HHHHHHHcc
Confidence            999998864

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.96  E-value=2.7e-29  Score=169.74  Aligned_cols=143  Identities=16%  Similarity=0.165  Sum_probs=117.6

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.       +
T Consensus         3 ~~~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~   75 (148)
T 3hcz_A            3 APLLLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAANIER-------K   75 (148)
T ss_dssp             CCCCTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCS-------S
T ss_pred             CccCCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCEEEEEEEecC-------C
Confidence            457899999999999999999999999999999999999999999999999999999999899999999973       6


Q ss_pred             hHHHHHHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           84 NDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      .++++++.+ +++.+ ||++  .|..+... -...|           ++...|+++|||++|+|++++.|..+.+++.+.
T Consensus        76 ~~~~~~~~~-~~~~~~~~~~--~d~~~~~~-~~~~~-----------~i~~~P~~~lid~~G~i~~~~~g~~~~~~~l~~  140 (148)
T 3hcz_A           76 DEEWLKFIR-SKKIGGWLNV--RDSKNHTD-FKITY-----------DIYATPVLYVLDKNKVIIAKRIGYENLDDFLVQ  140 (148)
T ss_dssp             SHHHHHHHH-HHTCTTSEEE--ECTTCCCC-HHHHH-----------CCCSSCEEEEECTTCBEEEESCCGGGHHHHHHH
T ss_pred             HHHHHHHHH-HcCCCCceEE--eccccchh-HHHhc-----------CcCCCCEEEEECCCCcEEEecCCHHHHHHHHHH
Confidence            779999997 77888 8888  56554311 11122           344455999999999999998877666666666


Q ss_pred             HHHHhc
Q 030881          163 IKKLLG  168 (170)
Q Consensus       163 l~~~l~  168 (170)
                      |.++++
T Consensus       141 l~~~l~  146 (148)
T 3hcz_A          141 YEKSLK  146 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666554

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.96  E-value=2.6e-29  Score=171.01  Aligned_cols=141  Identities=18%  Similarity=0.249  Sum_probs=120.0

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ...|.++|+|++.+.+|+.+++++++||++||+||++||++|..+++.|++++++++++++.+++|+.+.      ++.+
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~------~~~~   75 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPI------DPIE   75 (153)
T ss_dssp             --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTT------SCHH
T ss_pred             CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCCeEEEEEecCC------CCHH
Confidence            4579999999999999999999999999999999999999999999999999999998899999999762      5788


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                      .+++|++ +++.+||++  .|......   ..           +++...|++|+||++|+|++.+.|..+.+++.+.|++
T Consensus        76 ~~~~~~~-~~~~~~~~~--~d~~~~~~---~~-----------~~i~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~  138 (153)
T 2l5o_A           76 SVRQYVK-DYGLPFTVM--YDADKAVG---QA-----------FGTQVYPTSVLIGKKGEILKTYVGEPDFGKLYQEIDT  138 (153)
T ss_dssp             HHHHHHH-HTTCCSEEE--ECSSCHHH---HH-----------HTCCSSSEEEEECSSSCCCEEEESSCCHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCCceEE--cCchHHHH---HH-----------cCCCccCeEEEECCCCcEEEEEcCCCCHHHHHHHHHH
Confidence            9999997 889999987  44332211   11           2344455999999999999999998899999999999


Q ss_pred             HhcC
Q 030881          166 LLGL  169 (170)
Q Consensus       166 ~l~~  169 (170)
                      +|+.
T Consensus       139 ll~~  142 (153)
T 2l5o_A          139 AWRN  142 (153)
T ss_dssp             HHHC
T ss_pred             HHHh
Confidence            9864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.96  E-value=3.4e-29  Score=176.28  Aligned_cols=148  Identities=20%  Similarity=0.276  Sum_probs=121.7

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++ +.+++|++|.......++
T Consensus         5 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~-~~~v~v~~d~~~~~~~d~   83 (188)
T 2cvb_A            5 PELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPEDA   83 (188)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGGGS
T ss_pred             CcCCCCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC-eEEEEEEcCccccccccC
Confidence            5578999999999999999999999999999999999999999999999999999999988 999999997544333468


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC--------CCCC
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY--------PTTS  155 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~--------~~~~  155 (170)
                      .+.+++|++ +++.+||++  .|..+....   .           +++...|++||||++|+|+++..        |..+
T Consensus        84 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~g~~~~~~~~~g~~~  146 (188)
T 2cvb_A           84 PEKMAAFAE-EHGIFFPYL--LDETQEVAK---A-----------YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSKVQ  146 (188)
T ss_dssp             HHHHHHHHH-HHTCCSCEE--ECSSSHHHH---H-----------TTCCEESEEEEECTTCBEEEEECSSSCTTCGGGCC
T ss_pred             HHHHHHHHH-HhCCCceEE--ECCcchHHH---H-----------cCCCCCCeEEEECCCCcEEEEEecCCccccccccC
Confidence            899999997 789999988  454332211   1           23444459999999999999821        2236


Q ss_pred             chHHHHHHHHHhcC
Q 030881          156 LLSLEHDIKKLLGL  169 (170)
Q Consensus       156 ~~~l~~~l~~~l~~  169 (170)
                      .+++.+.|++++++
T Consensus       147 ~~~l~~~i~~ll~~  160 (188)
T 2cvb_A          147 SHDLEAAIEALLRG  160 (188)
T ss_dssp             CCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC
Confidence            78899999999864

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.96  E-value=1.6e-29  Score=178.97  Aligned_cols=149  Identities=17%  Similarity=0.217  Sum_probs=123.6

Q ss_pred             ccccCCcccccceee-CCCCCeecCCCCCCc-EEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVK-DARGHEVDLSTYKGK-VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~-~~~g~~~~l~~~~gk-~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      ..+..|.++|+|++. +.+|+.+++++++|| ++||+||++||++|+.+++.|++++++++++++.+++|++|.......
T Consensus        16 ~~~~~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~   95 (196)
T 2ywi_A           16 NMFPLGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKGVSFVAINSNDAEQYPE   95 (196)
T ss_dssp             CCCCTTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECSCTTTCGG
T ss_pred             cCCCcCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEECCccccccc
Confidence            346789999999999 999999999999998 599999999999999999999999999998899999999986443334


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE---------eCC
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR---------YYP  152 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~---------~~~  152 (170)
                      ++.+.+++|++ +++.+||++  .|..+....   .|           ++...|++||||++|+|+++         +.|
T Consensus        96 d~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~~-----------~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g  158 (196)
T 2ywi_A           96 DSPENMKKVAE-ELGYPFPYL--YDETQEVAK---AY-----------DAACTPDFYIFDRDLKCVYRGQLDDSRPNNGI  158 (196)
T ss_dssp             GSHHHHHHHHH-HHTCCSCEE--ECSSCHHHH---HH-----------TCCEESEEEEEETTCBEEEEECSSSCCTTTCC
T ss_pred             cCHHHHHHHHH-HcCCCceEE--ECCchHHHH---Hh-----------CCCCCCeEEEEcCCCeEEEccccCcccccccC
Confidence            68899999997 789999988  454332221   22           23344599999999999998         346


Q ss_pred             CCCchHHHHHHHHHhcC
Q 030881          153 TTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       153 ~~~~~~l~~~l~~~l~~  169 (170)
                      ..+.+++.+.|++++++
T Consensus       159 ~~~~~~l~~~i~~ll~~  175 (196)
T 2ywi_A          159 PVTGESIRAALDALLEG  175 (196)
T ss_dssp             CCCCHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHcC
Confidence            66888999999998853

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.96  E-value=5.9e-29  Score=169.43  Aligned_cols=140  Identities=18%  Similarity=0.221  Sum_probs=115.8

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      +..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++++.+++|++|.       +.+
T Consensus         3 l~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~-------~~~   75 (152)
T 2lrn_A            3 LATGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDR-------REE   75 (152)
T ss_dssp             SCTTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCS-------CHH
T ss_pred             ccCCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCCeEEEEEEccC-------CHH
Confidence            5789999999999999999999999999999999999999999999999999999998899999999973       678


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                      .++++++ +++.+||++  .|..... ..+..     .     +++...|++||||++|+|++++   .+.+++.+.|++
T Consensus        76 ~~~~~~~-~~~~~~~~~--~d~~~~~-~~~~~-----~-----~~v~~~P~~~lid~~G~i~~~~---~~~~~l~~~l~~  138 (152)
T 2lrn_A           76 DWKKAIE-EDKSYWNQV--LLQKDDV-KDVLE-----S-----YCIVGFPHIILVDPEGKIVAKE---LRGDDLYNTVEK  138 (152)
T ss_dssp             HHHHHHH-HHTCCSEEE--EECHHHH-HHHHH-----H-----TTCCSSCEEEEECTTSEEEEEC---CCTTHHHHHHHH
T ss_pred             HHHHHHH-HhCCCCeEE--ecccchh-HHHHH-----H-----hCCCcCCeEEEECCCCeEEEee---CCHHHHHHHHHH
Confidence            8999997 779999988  4431100 11111     0     2344556999999999999996   356789999998


Q ss_pred             HhcC
Q 030881          166 LLGL  169 (170)
Q Consensus       166 ~l~~  169 (170)
                      ++++
T Consensus       139 l~~~  142 (152)
T 2lrn_A          139 FVNG  142 (152)
T ss_dssp             HHTS
T ss_pred             HHhh
Confidence            8764

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.96  E-value=3.2e-29  Score=172.41  Aligned_cols=151  Identities=15%  Similarity=0.153  Sum_probs=116.8

Q ss_pred             ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCC-ChhhHHHHHHHHHHhcc----CCcEEEEeecCCCCCCCCCChH
Q 030881           11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKD----QGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      .+|+|++.|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++++    .++.+++|++|.    ..++.+
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~----~~d~~~   77 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP----ERDTKE   77 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT----TTCCHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC----CCCCHH
Confidence            579999999999999999999999999999999998 99999999999999986    479999999974    345788


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHH-HHhHhccCC----ccCCccccCceeEEECCCCcEEEEeCCCCCchHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLY-KLLKSGKWG----IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE  160 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~-~~~~~~~~~----~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~  160 (170)
                      .+++|++ +++.+||++.  ..... ...+. .|.....|.    ...+.+.|++++||||++|+|++.+.|..+++++.
T Consensus        78 ~~~~~~~-~~~~~~~~l~--~~~d~-~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~  153 (164)
T 2ggt_A           78 AIANYVK-EFSPKLVGLT--GTREE-VDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIA  153 (164)
T ss_dssp             HHHHHHH-TTCSSCEEEE--CCHHH-HHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTCCHHHHH
T ss_pred             HHHHHHH-HcCCCeEEEe--CCHHH-HHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCCCHHHHH
Confidence            9999997 8899998773  11000 00010 111111120    00012345668999999999999999988999999


Q ss_pred             HHHHHHhcC
Q 030881          161 HDIKKLLGL  169 (170)
Q Consensus       161 ~~l~~~l~~  169 (170)
                      +.|+++|++
T Consensus       154 ~~l~~ll~~  162 (164)
T 2ggt_A          154 ASIATHMRP  162 (164)
T ss_dssp             HHHHHHHGG
T ss_pred             HHHHHHHHh
Confidence            999999864

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.96  E-value=1.9e-28  Score=166.51  Aligned_cols=138  Identities=23%  Similarity=0.369  Sum_probs=117.6

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      +..|.++|+|++.+ +|..+++++++||++||+||++||++|..+++.|++++++++++++.+++|++|.       +.+
T Consensus         3 l~~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~~   74 (152)
T 3gl3_A            3 LDKGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDA-------KTG   74 (152)
T ss_dssp             CCTTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCS-------SHH
T ss_pred             CCCCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCC-------CHH
Confidence            57899999999999 9999999999999999999999999999999999999999999999999999873       678


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCc--hHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL--LSLEHDI  163 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~--~~l~~~l  163 (170)
                      ++.++.+ +++.+||++  .|.......   .           +++...|++||||++|+|++.+.|....  +++.+.|
T Consensus        75 ~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~i  137 (152)
T 3gl3_A           75 DAMKFLA-QVPAEFTVA--FDPKGQTPR---L-----------YGVKGMPTSFLIDRNGKVLLQHVGFRPADKEALEQQI  137 (152)
T ss_dssp             HHHHHHH-HSCCCSEEE--ECTTCHHHH---H-----------TTCCSSSEEEEECTTSBEEEEEESCCTTTHHHHHHHH
T ss_pred             HHHHHHH-HcCCCCcee--ECCcchhHH---H-----------cCCCCCCeEEEECCCCCEEEEEccCCCcCHHHHHHHH
Confidence            8899997 889999988  554432111   1           2344555999999999999998886544  6799999


Q ss_pred             HHHhc
Q 030881          164 KKLLG  168 (170)
Q Consensus       164 ~~~l~  168 (170)
                      ++++.
T Consensus       138 ~~~~~  142 (152)
T 3gl3_A          138 LAALG  142 (152)
T ss_dssp             HHHTC
T ss_pred             HHHHc
Confidence            88875

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.96  E-value=3.9e-29  Score=175.08  Aligned_cols=150  Identities=12%  Similarity=0.186  Sum_probs=114.1

Q ss_pred             ccccCCcc----cccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881            4 QFIQNPES----IFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE   78 (170)
Q Consensus         4 ~~~~~g~~----~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~   78 (170)
                      ..+..|+.    +|+|++.+.+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++|+.+++|+.|    
T Consensus        19 ~~l~~Gd~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~~~vv~Vs~D----   94 (179)
T 3ixr_A           19 SHMNIGDTLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQINATVLGVSRD----   94 (179)
T ss_dssp             CSSCTTCBCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESC----
T ss_pred             cccCcCcccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC----
Confidence            45678888    99999999999999999999999999999 8999999999999999999999999999999986    


Q ss_pred             CCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccC-CccccCceeEEECCCCcEEEEeCCCCCc-
Q 030881           79 EEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG-DDIQWNFAKFLVDKNGQVVDRYYPTTSL-  156 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~i~~~p~~~lid~~G~i~~~~~~~~~~-  156 (170)
                          +.+.+++|++ +++++||++  .|..+....   .|.....+...| ....+.|++||||++|+|++.+.+.... 
T Consensus        95 ----~~~~~~~~~~-~~~~~f~~l--~D~~~~~~~---~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~~~~~~~  164 (179)
T 3ixr_A           95 ----SVKSHDSFCA-KQGFTFPLV--SDSDAILCK---AFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWRQVKVPG  164 (179)
T ss_dssp             ----CHHHHHHHHH-HHTCCSCEE--ECTTCHHHH---HTTCEEEECCC--CEEEECCEEEEECTTSBEEEEECSCCSTT
T ss_pred             ----CHHHHHHHHH-HcCCceEEE--ECCchHHHH---HcCCcccccccCcccCCcceEEEEECCCCEEEEEEcCCCCCC
Confidence                6788999997 789999999  554443221   121111111111 0111256999999999999998654333 


Q ss_pred             --hHHHHHHHHHh
Q 030881          157 --LSLEHDIKKLL  167 (170)
Q Consensus       157 --~~l~~~l~~~l  167 (170)
                        +++.+.|+++.
T Consensus       165 ~~~~il~~l~~l~  177 (179)
T 3ixr_A          165 HAEEVLNKLKAHA  177 (179)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence              34555555544

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.96  E-value=1.7e-28  Score=172.40  Aligned_cols=146  Identities=20%  Similarity=0.213  Sum_probs=118.0

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      .+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|+++++++++.++.+++|++|.      ++.
T Consensus        33 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~------~~~  106 (186)
T 1jfu_A           33 MASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT------RDP  106 (186)
T ss_dssp             ECCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC------SCT
T ss_pred             cccCCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCC------CCH
Confidence            45689999999999999999999999999999999999999999999999999999998889999999973      345


Q ss_pred             HHHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC--chHHHH
Q 030881           85 DQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS--LLSLEH  161 (170)
Q Consensus        85 ~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~--~~~l~~  161 (170)
                      +.+++|++ +++. +||++  .|..+....   .+...       ..+...|++||||++|+|++++.|..+  .+++.+
T Consensus       107 ~~~~~~~~-~~~~~~~~~~--~d~~~~~~~---~~~~~-------~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~  173 (186)
T 1jfu_A          107 EKPKTFLK-EANLTRLGYF--NDQKAKVFQ---DLKAI-------GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALK  173 (186)
T ss_dssp             THHHHHHH-HTTCCTTCCE--ECTTCHHHH---HHHTT-------TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHH
T ss_pred             HHHHHHHH-HcCCCCCceE--ECCcchHHH---Hhccc-------cccCCCCEEEEECCCCCEEEEEecCCccCHHHHHH
Confidence            78888987 7788 59988  554432211   11111       011123499999999999999888664  678999


Q ss_pred             HHHHHhcC
Q 030881          162 DIKKLLGL  169 (170)
Q Consensus       162 ~l~~~l~~  169 (170)
                      .|++++++
T Consensus       174 ~l~~ll~~  181 (186)
T 1jfu_A          174 LIRAATGK  181 (186)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhcc
Confidence            99999864

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.96  E-value=1.2e-28  Score=178.04  Aligned_cols=143  Identities=15%  Similarity=0.187  Sum_probs=112.0

Q ss_pred             cccCCcccccceeeCC--CC--CeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881            5 FIQNPESIFDLSVKDA--RG--HEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE   78 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~--~g--~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~   78 (170)
                      .+..|+++|+|++.+.  +|  +.++++++ +||++||+|| ++||++|+.+++.|++++++|+++++++|+|++|    
T Consensus        24 ~l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~v~vv~Is~D----   99 (221)
T 2c0d_A           24 LSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKNVELLGISVD----   99 (221)
T ss_dssp             --CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTTEEEEEEESS----
T ss_pred             cCCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEeCC----
Confidence            3678999999999998  99  99999999 9999999999 9999999999999999999999889999999986    


Q ss_pred             CCCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC
Q 030881           79 EEPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY  151 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~  151 (170)
                          +.+.+++|++ ++       +.+||++  .|..+....   .|... .  ..|   ...|++||||++|+|++.+.
T Consensus       100 ----~~~~~~~~~~-~~~~~~g~~~~~fp~l--~D~~~~~~~---~ygv~-~--~~g---~~~P~~~lID~~G~I~~~~~  163 (221)
T 2c0d_A          100 ----SVYSHLAWKN-MPIEKGGIGNVEFTLV--SDINKDISK---NYNVL-Y--DNS---FALRGLFIIDKNGCVRHQTV  163 (221)
T ss_dssp             ----CHHHHHHHHH-SCGGGTCCCSCSSEEE--ECTTSHHHH---HTTCE-E--TTT---EECEEEEEECTTSBEEEEEE
T ss_pred             ----CHHHHHHHHH-HhhhhcCccCCceEEE--ECCchHHHH---HcCCc-c--cCC---CccceEEEECCCCeEEEEEe
Confidence                6778888987 66       6789988  554332211   11110 0  001   13459999999999999976


Q ss_pred             CC----CCchHHHHHHHHHh
Q 030881          152 PT----TSLLSLEHDIKKLL  167 (170)
Q Consensus       152 ~~----~~~~~l~~~l~~~l  167 (170)
                      +.    .+.+++.+.|+++.
T Consensus       164 g~~~~~~~~~ell~~l~~L~  183 (221)
T 2c0d_A          164 NDLPIGRNVQEVLRTIDSII  183 (221)
T ss_dssp             ECTTCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHh
Confidence            53    34567888887765

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.96  E-value=2.9e-28  Score=171.55  Aligned_cols=144  Identities=13%  Similarity=0.107  Sum_probs=114.3

Q ss_pred             ccCCcccccceeeCCCCC----eecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGH----EVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~----~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      +..|+++|+|++.+.+|.    .+++++++||++||+|| ++||++|+.+++.|++++++++++++.+++|++|      
T Consensus         1 ~~~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d------   74 (187)
T 1we0_A            1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD------   74 (187)
T ss_dssp             CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS------
T ss_pred             CCCCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcCCEEEEEECC------
Confidence            357999999999999999    99999999999999999 9999999999999999999999889999999986      


Q ss_pred             CCChHHHHHHHHhhc----CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--
Q 030881           81 PGSNDQIADFVCTRF----KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~----~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--  154 (170)
                        +.+.+++|.+ ++    +.+||++  .|.......   .|.....  ..|.   +.|++||||++|+|++.+.|..  
T Consensus        75 --~~~~~~~~~~-~~~~~~~~~~~~~--~d~~~~~~~---~~~v~~~--~~g~---~~P~~~lid~~G~i~~~~~g~~~~  141 (187)
T 1we0_A           75 --THFVHKAWHE-NSPAVGSIEYIMI--GDPSQTISR---QFDVLNE--ETGL---ADRGTFIIDPDGVIQAIEINADGI  141 (187)
T ss_dssp             --CHHHHHHHHH-SCHHHHTCCSEEE--ECTTCHHHH---HTTCEET--TTTE---ECEEEEEECTTSBEEEEEEECTTS
T ss_pred             --CHHHHHHHHH-HhccccCCCceEE--ECCchHHHH---HhCCCcC--CCCc---eeeEEEEECCCCeEEEEEecCCCC
Confidence              5678888886 66    7889988  454322111   1111100  0001   4459999999999999987754  


Q ss_pred             --CchHHHHHHHHHhc
Q 030881          155 --SLLSLEHDIKKLLG  168 (170)
Q Consensus       155 --~~~~l~~~l~~~l~  168 (170)
                        +.+++.+.|++++.
T Consensus       142 ~~~~~~l~~~l~~l~~  157 (187)
T 1we0_A          142 GRDASTLINKVKAAQY  157 (187)
T ss_dssp             CCCTTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhh
Confidence              57788888887763

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.96  E-value=5.8e-28  Score=167.82  Aligned_cols=156  Identities=16%  Similarity=0.239  Sum_probs=118.9

Q ss_pred             cCCcccc-cceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhcc--CCcEEEEeecCCCCCCCCC
Q 030881            7 QNPESIF-DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         7 ~~g~~~p-~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~--~~v~~v~is~d~~~~~~~~   82 (170)
                      ..|.++| +|+|.|.+|+.+++++++||++||+||++||+ +|..+++.|+++++++++  .++++|+|++|.     .+
T Consensus         2 ~~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~-----~d   76 (170)
T 3me7_A            2 SLGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDP-----KD   76 (170)
T ss_dssp             CTTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCT-----TC
T ss_pred             CCCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCC-----CC
Confidence            5799999 99999999999999999999999999999998 599999999999999975  459999999983     36


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHh-ccCCc-cCCccccCceeEEECCCCcEEEEeCCC-CCchHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKS-GKWGI-FGDDIQWNFAKFLVDKNGQVVDRYYPT-TSLLSL  159 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~p~~~lid~~G~i~~~~~~~-~~~~~l  159 (170)
                      +.+.+++|++ +++..++.+...- .+. .......... ...-. .++.+.+.|++||||++|+|++.+.|. .+++++
T Consensus        77 ~~~~~~~~~~-~~~~~~~~w~~l~-~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~~~~~~~i  153 (170)
T 3me7_A           77 TLEDIKRFQK-EYGIDGKGWKVVK-AKT-SEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGVNYNYLEF  153 (170)
T ss_dssp             CHHHHHHHHH-HTTCCSSSEEEEE-ESS-HHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESSSCCHHHH
T ss_pred             CHHHHHHHHH-HcCCCCCCeEEEe-CCC-HHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCCCCCHHHH
Confidence            8999999997 8898877431110 001 0111111111 00000 113566778999999999999987775 578889


Q ss_pred             HHHHHHHhcCC
Q 030881          160 EHDIKKLLGLS  170 (170)
Q Consensus       160 ~~~l~~~l~~~  170 (170)
                      .+.|+++++++
T Consensus       154 ~~~l~~~~~~~  164 (170)
T 3me7_A          154 VNALRLARGEG  164 (170)
T ss_dssp             HHHHHHHTTCS
T ss_pred             HHHHHHhhccc
Confidence            99999988653

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.96  E-value=1.4e-28  Score=167.51  Aligned_cols=140  Identities=14%  Similarity=0.249  Sum_probs=116.3

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ...|.++|+|++.+.+|+.+++++++||++||+||++||++|..+++.|+++++++++.++.+++|++|.      ++.+
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~------~~~~   75 (154)
T 3kcm_A            2 SLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDE------GGKV   75 (154)
T ss_dssp             -CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCT------THHH
T ss_pred             CCCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCC------cchH
Confidence            4689999999999999999999999999999999999999999999999999999998889999999873      3478


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--CchHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--SLLSLEHDI  163 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--~~~~l~~~l  163 (170)
                      .+++|++ +++.+||++  .|.......   .|           ++...|++||||++|+|++++.|..  +.+++.+.|
T Consensus        76 ~~~~~~~-~~~~~~~~~--~d~~~~~~~---~~-----------~v~~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l  138 (154)
T 3kcm_A           76 AVEEFFR-KTGFTLPVL--LDADKRVGK---LY-----------GTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFL  138 (154)
T ss_dssp             HHHHHHH-HHCCCCCEE--ECTTCHHHH---HH-----------TCCSBCEEEEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred             HHHHHHH-HcCCCeeEE--ecCchHHHH---Hh-----------CCCCCCeEEEECCCCcEEEEEcCCCccccHHHHHHH
Confidence            8899997 779999988  554332211   22           2334459999999999999988875  566899999


Q ss_pred             HHHhc
Q 030881          164 KKLLG  168 (170)
Q Consensus       164 ~~~l~  168 (170)
                      +++..
T Consensus       139 ~~l~~  143 (154)
T 3kcm_A          139 NNELS  143 (154)
T ss_dssp             HTC--
T ss_pred             HHHHH
Confidence            88764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.96  E-value=1.4e-28  Score=167.37  Aligned_cols=138  Identities=14%  Similarity=0.152  Sum_probs=110.5

Q ss_pred             ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHH
Q 030881           11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADF   90 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~   90 (170)
                      ++|+|.+. .+|+.+++++++||++||+||++||++|+.++|.|+++++++++.++.+++|++|        +.+.+.+|
T Consensus         4 pa~~~~~~-~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d--------~~~~~~~~   74 (151)
T 3raz_A            4 SADELAGW-KDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALD--------TSDNIGNF   74 (151)
T ss_dssp             ---CEEET-TTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESS--------CHHHHHHH
T ss_pred             Ccchhhcc-cCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCCeEEEEEECC--------ChHHHHHH
Confidence            34455543 7999999999999999999999999999999999999999998889999999986        67899999


Q ss_pred             HHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        91 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      ++ +++++||++  .+....... +..    ...    ..+...|++||||++|+|++++.|..+.+++.+.|+++.+.
T Consensus        75 ~~-~~~~~~~~~--~~~~~~~~~-~~~----~~~----~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~~~  141 (151)
T 3raz_A           75 LK-QTPVSYPIW--RYTGANSRN-FMK----TYG----NTVGVLPFTVVEAPKCGYRQTITGEVNEKSLTDAVKLAHSK  141 (151)
T ss_dssp             HH-HSCCSSCEE--EECCSCHHH-HHH----TTT----CCSCCSSEEEEEETTTTEEEECCSCCCHHHHHHHHHHHHTC
T ss_pred             HH-HcCCCCceE--ecCccchHH-HHH----HhC----CccCCCCEEEEECCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            97 889999998  443322211 111    110    11444559999999999999999999999999999998753

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.96  E-value=2.6e-28  Score=166.50  Aligned_cols=138  Identities=28%  Similarity=0.366  Sum_probs=108.8

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .....|+++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++++|+.+++|++|.       .
T Consensus         7 ~~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~-------~   79 (152)
T 2lrt_A            7 EDKIKEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQISLDG-------D   79 (152)
T ss_dssp             CSSSCTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSC-------C
T ss_pred             hhhccCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCCeEEEEEEccC-------C
Confidence            445689999999999999999999999999999999999999999999999999999999899999999984       5


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.++++..   +.+||++  .|..+....-...|           ++...|++||||++|+|++++.|..+.   ++.+
T Consensus        80 ~~~~~~~~~---~~~~~~~--~d~~~~~~~~~~~~-----------~v~~~P~~~lid~~G~i~~~~~g~~~~---e~~~  140 (152)
T 2lrt_A           80 EHFWKTSAD---NLPWVCV--RDANGAYSSYISLY-----------NVTNLPSVFLVNRNNELSARGENIKDL---DEAI  140 (152)
T ss_dssp             HHHHHHHHT---TCSSEEE--ECSSGGGCHHHHHH-----------TCCSCSEEEEEETTTEEEEETTTCSCH---HHHH
T ss_pred             HHHHHHHHh---CCCceEE--ECCCCcchHHHHHc-----------CcccCceEEEECCCCeEEEecCCHHHH---HHHH
Confidence            566777764   3678877  56554322222233           233344999999999999998776554   4444


Q ss_pred             HHHh
Q 030881          164 KKLL  167 (170)
Q Consensus       164 ~~~l  167 (170)
                      .+++
T Consensus       141 ~~~~  144 (152)
T 2lrt_A          141 KKLL  144 (152)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=169.65  Aligned_cols=149  Identities=14%  Similarity=0.186  Sum_probs=115.7

Q ss_pred             ccceeeCCCCCeecCCCCCCcEEEEEEecCCCCC-ChhhHHHHHHHHHHhcc----CCcEEEEeecCCCCCCCCCChHHH
Q 030881           13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKD----QGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus        13 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      |+|++.+.+|+.+++++++||++||+||++||++ |+.+++.|+++++++++    .++++++|++|.    ..++.+.+
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~----~~d~~~~~   82 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDP----ERDDVEAM   82 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCS----TTCCHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECC----CCCCHHHH
Confidence            8999999999999999999999999999999998 99999999999999974    479999999973    24678999


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCC----ccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWG----IFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      ++|++ +++.+|+.+.  +.......-...|.....|.    ...+.+.|.|++||||++|+|++.+.|..+++++.+.|
T Consensus        83 ~~~~~-~~~~~~~~l~--~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l  159 (171)
T 2rli_A           83 ARYVQ-DFHPRLLGLT--GSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSV  159 (171)
T ss_dssp             HHHHH-TTCTTCCEEE--CCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHH
T ss_pred             HHHHH-HcCCCeEEEe--CCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHH
Confidence            99997 8899998873  21100000001111111220    00123456779999999999999999988999999999


Q ss_pred             HHHhc
Q 030881          164 KKLLG  168 (170)
Q Consensus       164 ~~~l~  168 (170)
                      +++++
T Consensus       160 ~~ll~  164 (171)
T 2rli_A          160 RRHMA  164 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99885

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.96  E-value=3.3e-28  Score=172.41  Aligned_cols=144  Identities=13%  Similarity=0.128  Sum_probs=115.2

Q ss_pred             cccCCcccccceeeCCC-------------C--CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEE
Q 030881            5 FIQNPESIFDLSVKDAR-------------G--HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEI   68 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~-------------g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~   68 (170)
                      .+..|+++|+|++.+.+             |  +.+++++++||++||+|| ++||++|+.+++.|++++++++++++.+
T Consensus         3 ~l~~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~v   82 (195)
T 2bmx_A            3 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   82 (195)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             cCCCCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCCCEE
Confidence            47899999999999988             7  899999999999999999 9999999999999999999999889999


Q ss_pred             EEeecCCCCCCCCCChHHHHHHHHhhc----CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC
Q 030881           69 LAFPCNQFGEEEPGSNDQIADFVCTRF----KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG  144 (170)
Q Consensus        69 v~is~d~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G  144 (170)
                      ++|++|        +.+.+++|.+ ++    +.+||++  .|.......   .|.....   .|.   +.|++||||++|
T Consensus        83 v~Vs~d--------~~~~~~~~~~-~~~~~~~~~~~~~--~d~~~~~~~---~~~v~~~---~g~---~~P~~~lid~~G  142 (195)
T 2bmx_A           83 LGVSID--------SEFAHFQWRA-QHNDLKTLPFPML--SDIKRELSQ---AAGVLNA---DGV---ADRVTFIVDPNN  142 (195)
T ss_dssp             EEEESS--------CHHHHHHHHH-HCTTGGGCCSCEE--ECTTSHHHH---HHTCBCT---TSS---BCEEEEEECTTS
T ss_pred             EEEECC--------CHHHHHHHHH-HhccccCCceeEE--eCCchHHHH---HhCCccc---CCC---ccceEEEEcCCC
Confidence            999986        5778889986 66    7889988  453322111   2211100   011   345999999999


Q ss_pred             cEEEEeCCCC----CchHHHHHHHHHhc
Q 030881          145 QVVDRYYPTT----SLLSLEHDIKKLLG  168 (170)
Q Consensus       145 ~i~~~~~~~~----~~~~l~~~l~~~l~  168 (170)
                      +|++.+.|..    +.+++.+.|++++.
T Consensus       143 ~i~~~~~g~~~~~~~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          143 EIQFVSATAGSVGRNVDEVLRVLDALQS  170 (195)
T ss_dssp             BEEEEEEECTTCCCCHHHHHHHHHHHHC
T ss_pred             eEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence            9999987654    56778888887763

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.96  E-value=2.7e-28  Score=169.45  Aligned_cols=144  Identities=15%  Similarity=0.162  Sum_probs=112.6

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+..|+++|+|++.+.+|+.+++++++||++||+|| ++||++|..+++.|+++++++  .++++++|+.|        +
T Consensus        20 ~l~~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~v~vv~Is~d--------~   89 (171)
T 2yzh_A           20 ELKVGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EGVDVTVVSMD--------L   89 (171)
T ss_dssp             CCCTTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESS--------C
T ss_pred             cCCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CCceEEEEeCC--------C
Confidence            467899999999999999999999999999999999 799999999999999999999  67999999986        6


Q ss_pred             hHHHHHHHHhhcCC-CCCceEEee-cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC-----CCCc
Q 030881           84 NDQIADFVCTRFKS-EFPIFEKID-VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP-----TTSL  156 (170)
Q Consensus        84 ~~~~~~~~~~~~~~-~~p~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~-----~~~~  156 (170)
                      .+.+++|++ +++. +||++  .| ..+..  ..|+..... .+..|.   +.|++||||++|+|++.+.+     ..+.
T Consensus        90 ~~~~~~~~~-~~~~~~~~~l--~D~~~~~~--~~~gv~~~~-~~~~g~---~~p~~~liD~~G~i~~~~~~~~~~~~~~~  160 (171)
T 2yzh_A           90 PFAQKRFCE-SFNIQNVTVA--SDFRYRDM--EKYGVLIGE-GALKGI---LARAVFIIDKEGKVAYVQLVPEITEEPNY  160 (171)
T ss_dssp             HHHHHHHHH-HTTCCSSEEE--ECTTTCGG--GGGTCBBCS-STTTTS---BCCEEEEECTTSBEEEEEECSBTTSCCCC
T ss_pred             HHHHHHHHH-HcCCCCeEEe--ecCccCcH--HHhCCEecc-cccCCc---eeeEEEEEcCCCeEEEEEeCCCcCCCCCH
Confidence            788899997 7899 89998  55 33322  222211000 000111   24599999999999999854     3456


Q ss_pred             hHHHHHHHHHh
Q 030881          157 LSLEHDIKKLL  167 (170)
Q Consensus       157 ~~l~~~l~~~l  167 (170)
                      +++.+.|+++|
T Consensus       161 ~~ll~~l~~ll  171 (171)
T 2yzh_A          161 DEVVNKVKELI  171 (171)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhhC
Confidence            77888888764

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.96  E-value=1.6e-28  Score=175.00  Aligned_cols=148  Identities=16%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             CccccccCCcccccceeeCC--CC--CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881            1 MTSQFIQNPESIFDLSVKDA--RG--HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus         1 ~~~~~~~~g~~~p~f~l~~~--~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~   75 (170)
                      |+...+..|+++|+|++.+.  +|  +.+++++++||++||+|| ++||++|+.+++.|++++++|+++++++++|++| 
T Consensus         1 m~~~~~~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~v~vi~Is~D-   79 (202)
T 1uul_A            1 MSCGEAEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD-   79 (202)
T ss_dssp             ---CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-
T ss_pred             CCcccccCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC-
Confidence            56677889999999999997  78  899999999999999999 9999999999999999999999889999999986 


Q ss_pred             CCCCCCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEE
Q 030881           76 FGEEEPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD  148 (170)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~  148 (170)
                             +.+.+.+|++ ++       +.+||++  .|..+....   .|......  .|.   ..|++||||++|+|++
T Consensus        80 -------~~~~~~~~~~-~~~~~~~~~~~~~p~l--~D~~~~~~~---~ygv~~~~--~g~---~~P~~~lid~~G~i~~  141 (202)
T 1uul_A           80 -------SEYSHLAWTS-IERKRGGLGQMNIPIL--ADKTKCIMK---SYGVLKEE--DGV---AYRGLFIIDPKQNLRQ  141 (202)
T ss_dssp             -------CHHHHHHHHH-SCGGGTCCCSCSSCEE--ECTTCHHHH---HHTCEETT--TTE---ECEEEEEECTTSBEEE
T ss_pred             -------CHHHHHHHHH-HHHhhCCCCCCceeEE--ECCchHHHH---HcCCccCC--CCc---eeeEEEEECCCCEEEE
Confidence                   6778888887 65       7889988  554332221   22111000  011   3459999999999999


Q ss_pred             EeCCCCC----chHHHHHHHHHh
Q 030881          149 RYYPTTS----LLSLEHDIKKLL  167 (170)
Q Consensus       149 ~~~~~~~----~~~l~~~l~~~l  167 (170)
                      .+.|...    .+++.+.|+++.
T Consensus       142 ~~~g~~~~~~~~~ell~~l~~l~  164 (202)
T 1uul_A          142 ITVNDLPVGRDVDEALRLVKAFQ  164 (202)
T ss_dssp             EEEECTTBCCCHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCCHHHHHHHHHHhh
Confidence            9766443    467777777765

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.96  E-value=1.2e-28  Score=173.56  Aligned_cols=142  Identities=13%  Similarity=0.124  Sum_probs=111.6

Q ss_pred             cCCcccccceeeCC-CC--CeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            7 QNPESIFDLSVKDA-RG--HEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         7 ~~g~~~p~f~l~~~-~g--~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..|+++|+|++.+. +|  +.+++++++||++||+||+ +||++|+.+++.|++++++|+++|+++++|+.|        
T Consensus         2 ~~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~v~vv~Is~d--------   73 (186)
T 1n8j_A            2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTD--------   73 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECC--------
Confidence            57999999999998 59  8999999999999999995 999999999999999999999889999999986        


Q ss_pred             ChHHHHHHHHhhc----CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC----
Q 030881           83 SNDQIADFVCTRF----KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT----  154 (170)
Q Consensus        83 ~~~~~~~~~~~~~----~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~----  154 (170)
                      +.+.+++|++ ++    +++||++  .|..+....   .|......  .|.   +.|++||||++|+|++.+.+..    
T Consensus        74 ~~~~~~~~~~-~~~~~~~~~fp~l--~D~~~~~~~---~ygv~~~~--~g~---~~p~~~lID~~G~i~~~~~~~~~~~~  142 (186)
T 1n8j_A           74 THFTHKAWHS-SSETIAKIKYAMI--GDPTGALTR---NFDNMRED--EGL---ADRATFVVDPQGIIQAIEVTAEGIGR  142 (186)
T ss_dssp             CHHHHHHHHH-HCTTGGGCCSEEE--ECTTSHHHH---HTTCEETT--TTE---ECEEEEEECTTSBEEEEEEECTTBCC
T ss_pred             CHHHHHHHHH-HcCcccCCceeEE--ECCchHHHH---HhCCccCC--CCc---eeeEEEEECCCCeEEEEEecCCCCCC
Confidence            6778889987 77    7889988  554332221   11110000  011   2459999999999999987643    


Q ss_pred             CchHHHHHHHHHh
Q 030881          155 SLLSLEHDIKKLL  167 (170)
Q Consensus       155 ~~~~l~~~l~~~l  167 (170)
                      +.+++.+.|+++.
T Consensus       143 ~~~~l~~~l~~l~  155 (186)
T 1n8j_A          143 DASDLLRKIKAAQ  155 (186)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4667888777765

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.96  E-value=3e-28  Score=164.47  Aligned_cols=145  Identities=18%  Similarity=0.236  Sum_probs=121.3

Q ss_pred             ccCCccccccee--eCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            6 IQNPESIFDLSV--KDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         6 ~~~g~~~p~f~l--~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      +..|.++|+|++  .+.+|+.+++++++||++||+||++||++|..+.+.+++++++++++ +.+++|++|...  ...+
T Consensus         1 l~~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~v~~~~~~--~~~~   77 (148)
T 2b5x_A            1 MKLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ-LNVVAVHMPRSE--DDLD   77 (148)
T ss_dssp             CCTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEECCCST--TTSS
T ss_pred             CCCCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEEcCCCc--cccC
Confidence            357999999999  68899999999999999999999999999999999999999999887 999999987422  1237


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.++++++ +++.+||++  .|.......   .           +++...|+++++|++|++++.+.|..+.+++.+.|
T Consensus        78 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  140 (148)
T 2b5x_A           78 PGKIKETAA-EHDITQPIF--VDSDHALTD---A-----------FENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRV  140 (148)
T ss_dssp             HHHHHHHHH-HTTCCSCEE--ECSSCHHHH---H-----------TCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHH
T ss_pred             HHHHHHHHH-HcCCCcceE--ECCchhHHH---H-----------hCCCCCCEEEEECCCCcEEEEecCCCCHHHHHHHH
Confidence            889999997 789999987  444322111   1           34455569999999999999999988899999999


Q ss_pred             HHHhcCC
Q 030881          164 KKLLGLS  170 (170)
Q Consensus       164 ~~~l~~~  170 (170)
                      +++++++
T Consensus       141 ~~~l~~~  147 (148)
T 2b5x_A          141 NRVLAET  147 (148)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhcc
Confidence            9998753

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.96  E-value=2.2e-28  Score=167.80  Aligned_cols=134  Identities=16%  Similarity=0.241  Sum_probs=107.0

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCc-EEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGK-VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      .++..|.++|+|++.+.+|+.+++++++|| ++||+|| ++||++|+.+++.|++++++++++++.+++|++|       
T Consensus         7 ~~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d-------   79 (160)
T 1xvw_A            7 HMLNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG-------   79 (160)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC-------
T ss_pred             CCCCCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCC-------
Confidence            347899999999999999999999999998 9999998 9999999999999999999999889999999986       


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeec--CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCc
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDV--NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL  156 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~--~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~  156 (170)
                       +.+.+++|++ +++.+||++  .|.  .+....   .|......    .++| .|++||||++|+|++.+.|..+.
T Consensus        80 -~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~~~---~~~v~~~~----~~~p-~~~~~lid~~G~i~~~~~g~~~~  144 (160)
T 1xvw_A           80 -PPPTHKIWAT-QSGFTFPLL--SDFWPHGAVSQ---AYGVFNEQ----AGIA-NRGTFVVDRSGIIRFAEMKQPGE  144 (160)
T ss_dssp             -CHHHHHHHHH-HHTCCSCEE--ECTTTTTHHHH---HTTCEETT----TTEE-CSEEEEECTTSBEEEEEECCTTC
T ss_pred             -CHHHHHHHHH-hcCCCceEE--ecCCcChHHHH---HcCCcccc----CCCe-eeeEEEECCCCeEEEEEecCCCC
Confidence             6789999997 789999988  453  222111   11111000    0222 23899999999999998876543

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.95  E-value=3.4e-28  Score=169.80  Aligned_cols=137  Identities=14%  Similarity=0.201  Sum_probs=114.4

Q ss_pred             cccCCcccccceeeCCCC--CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARG--HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g--~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .+..|.++|+|++.+.+|  +.+++++++||++||+||++||++|+.+++.|++++++    ++.+++|+++       +
T Consensus        29 ~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~vs~~-------d   97 (176)
T 3kh7_A           29 SALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----GVVIYGINYK-------D   97 (176)
T ss_dssp             TTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCEEEEEEES-------C
T ss_pred             ccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----CCEEEEEeCC-------C
Confidence            467999999999999999  88999999999999999999999999999999999886    6999999986       4


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHD  162 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~  162 (170)
                      +.+.+.+|++ +++.+|+.+. .|..+...   ..|           ++...|++||||++|+|++.+.|..+.+++.+.
T Consensus        98 ~~~~~~~~~~-~~~~~~~~~~-~d~~~~~~---~~~-----------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~  161 (176)
T 3kh7_A           98 DNAAAIKWLN-ELHNPYLLSI-SDADGTLG---LDL-----------GVYGAPETYLIDKQGIIRHKIVGVVDQKVWREQ  161 (176)
T ss_dssp             CHHHHHHHHH-HTTCCCSEEE-EETTCHHH---HHH-----------TCCSSCEEEEECTTCBEEEEEESCCCHHHHHHH
T ss_pred             CHHHHHHHHH-HcCCCCceEE-ECCcchHH---HHc-----------CCCCCCeEEEECCCCeEEEEEcCCCCHHHHHHH
Confidence            8899999997 7899998532 44433221   122           233445999999999999999998888888888


Q ss_pred             HHHHhc
Q 030881          163 IKKLLG  168 (170)
Q Consensus       163 l~~~l~  168 (170)
                      |+++|+
T Consensus       162 l~~~l~  167 (176)
T 3kh7_A          162 LAPLYQ  167 (176)
T ss_dssp             THHHHH
T ss_pred             HHHHHH
Confidence            887764

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.95  E-value=1.4e-27  Score=162.26  Aligned_cols=140  Identities=19%  Similarity=0.300  Sum_probs=117.1

Q ss_pred             ccCCcccc-cceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            6 IQNPESIF-DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         6 ~~~g~~~p-~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      +..|.++| +|++.+.+|+.+++++++||++||+||++||++|+.+.+.|++++++++++++.+++|++|.       ..
T Consensus         3 l~~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~-------~~   75 (152)
T 2lja_A            3 LRSGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCDK-------NK   75 (152)
T ss_dssp             TTTTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCS-------CH
T ss_pred             cccCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccC-------cH
Confidence            67899999 99999999999999999999999999999999999999999999999998889999999873       56


Q ss_pred             HHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      +.+.++.+ +++..++.+. .|....    +...          +++...|+++|||++|+|++.+.|..+.+++.+.|+
T Consensus        76 ~~~~~~~~-~~~~~~~~~~-~d~~~~----~~~~----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~  139 (152)
T 2lja_A           76 KAWENMVT-KDQLKGIQLH-MGTDRT----FMDA----------YLINGIPRFILLDRDGKIISANMTRPSDPKTAEKFN  139 (152)
T ss_dssp             HHHHHHHH-HHTCCSEEEE-CSSCTH----HHHH----------TTCCSSCCEEEECTTSCEEESSCCCTTCHHHHHHHH
T ss_pred             HHHHHHHH-hcCCCCceee-cCcchh----HHHH----------cCcCCCCEEEEECCCCeEEEccCCCCCHHHHHHHHH
Confidence            78899987 6677765442 232111    1111          234455599999999999999999889999999999


Q ss_pred             HHhc
Q 030881          165 KLLG  168 (170)
Q Consensus       165 ~~l~  168 (170)
                      +++.
T Consensus       140 ~~~~  143 (152)
T 2lja_A          140 ELLG  143 (152)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            9875

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.95  E-value=4.9e-28  Score=171.91  Aligned_cols=137  Identities=13%  Similarity=0.166  Sum_probs=112.8

Q ss_pred             ccCCcccccceeeCC--CCC---eecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCC
Q 030881            6 IQNPESIFDLSVKDA--RGH---EVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGE   78 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~--~g~---~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~   78 (170)
                      +..|+++|+|++.+.  +|+   .++++++ +||++||+|| ++||++|+.+++.|++++++++++++.+++|++|    
T Consensus         1 ~~~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~d----   76 (198)
T 1zof_A            1 MVVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID----   76 (198)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS----
T ss_pred             CCCCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEECC----
Confidence            357999999999998  898   9999999 9999999999 9999999999999999999999889999999987    


Q ss_pred             CCCCChHHHHHHHHhh-------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccc-----cCceeEEECCCCcE
Q 030881           79 EEPGSNDQIADFVCTR-------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ-----WNFAKFLVDKNGQV  146 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~-------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~p~~~lid~~G~i  146 (170)
                          +.+.+++|.+ +       ++.+||++  .|..+....   .           +++.     +.|++||||++|+|
T Consensus        77 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~~g~~~P~~~lid~~G~i  135 (198)
T 1zof_A           77 ----SEQVHFAWKN-TPVEKGGIGQVSFPMV--ADITKSISR---D-----------YDVLFEEAIALRGAFLIDKNMKV  135 (198)
T ss_dssp             ----CHHHHHHHHT-SCGGGTCCCCCSSCEE--ECTTSHHHH---H-----------TTCEETTTEECEEEEEEETTTEE
T ss_pred             ----CHHHHHHHHH-hhhhcccccCceeEEE--ECCchHHHH---H-----------hCCcccCCcccceEEEECCCCEE
Confidence                5678888886 5       68889988  554322211   1           2232     45599999999999


Q ss_pred             EEEeCCCC----CchHHHHHHHHHh
Q 030881          147 VDRYYPTT----SLLSLEHDIKKLL  167 (170)
Q Consensus       147 ~~~~~~~~----~~~~l~~~l~~~l  167 (170)
                      ++.+.|..    +.+++.+.|+++.
T Consensus       136 ~~~~~g~~~~~~~~~~l~~~l~~l~  160 (198)
T 1zof_A          136 RHAVINDLPLGRNADEMLRMVDALL  160 (198)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCCHHHHHHHHHHHH
Confidence            99987754    4567777777765

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.95  E-value=6.6e-28  Score=162.22  Aligned_cols=138  Identities=17%  Similarity=0.257  Sum_probs=113.5

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++ +||++||+||++||++|+.+++.|+++++++++.++.+++|++|.    ..++
T Consensus         7 ~~~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~----~~~~   81 (145)
T 3erw_A            7 AEEKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN----SEQN   81 (145)
T ss_dssp             -----CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG----GSSC
T ss_pred             ccccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC----CcCC
Confidence            34678999999999999999999999 999999999999999999999999999999997789999999973    2348


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.+++|.+ +++.+||++  .|.......   .           +++...|++++||++|+|++.+.|..+.+++.+.|
T Consensus        82 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  144 (145)
T 3erw_A           82 QQVVEDFIK-ANKLTFPIV--LDSKGELMK---E-----------YHIITIPTSFLLNEKGEIEKTKIGPMTAEQLKEWT  144 (145)
T ss_dssp             HHHHHHHHH-HTTCCSCEE--ECSSSHHHH---H-----------TTCCEESEEEEECTTCCEEEEEESCCCHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCceeEE--EcCchhHHH---h-----------cCcCccCeEEEEcCCCcEEEEEcCCcCHHHHHHhh
Confidence            899999997 789999988  454332111   1           34455569999999999999999988888887766

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.4e-28  Score=174.52  Aligned_cols=145  Identities=12%  Similarity=0.084  Sum_probs=110.9

Q ss_pred             ccccCCcccccceeeCC---CCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDA---RGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~---~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      ..+..|+++|+|++.+.   +|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++++++|+||+|     
T Consensus        17 ~~~~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~v~vv~Is~D-----   91 (211)
T 2pn8_A           17 NLYFQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD-----   91 (211)
T ss_dssp             --CCSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             ccCCCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            45678999999999975   46899999999999999999 9999999999999999999999889999999986     


Q ss_pred             CCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           80 EPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                         +.+.+++|++ ++       +.+||++  .|..+....   .|.... . ..|.   ..|++||||++|+|++.+.+
T Consensus        92 ---~~~~~~~~~~-~~~~~~g~~~~~fp~l--~D~~~~~~~---~ygv~~-~-~~g~---~~p~~~lID~~G~I~~~~~g  157 (211)
T 2pn8_A           92 ---SQFTHLAWIN-TPRRQGGLGPIRIPLL--SDLTHQISK---DYGVYL-E-DSGH---TLRGLFIIDDKGILRQITLN  157 (211)
T ss_dssp             ---CHHHHHHHHT-SCGGGTCCCSCSSCEE--ECTTSHHHH---HTTCEE-T-TTTE---ECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHHH-HhhhccCccCCceEEE--ECCchHHHH---HcCCcc-c-CCCc---ccceEEEECCCCEEEEEEec
Confidence               6778888886 55       6789988  554332211   111100 0 0011   24599999999999999765


Q ss_pred             CC----CchHHHHHHHHHh
Q 030881          153 TT----SLLSLEHDIKKLL  167 (170)
Q Consensus       153 ~~----~~~~l~~~l~~~l  167 (170)
                      ..    +.+++.+.|+++.
T Consensus       158 ~~~~~~~~~ell~~l~~l~  176 (211)
T 2pn8_A          158 DLPVGRSVDETLRLVQAFQ  176 (211)
T ss_dssp             CTTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            43    4566777777664

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.95  E-value=6.1e-28  Score=171.81  Aligned_cols=156  Identities=15%  Similarity=0.102  Sum_probs=114.2

Q ss_pred             ccCCccc--ccceeeCCCCCeecCCCCCCcEEEEEEecCCCCC-ChhhHHHHHHHHHHhccC---CcEEEEeecCCCCCC
Q 030881            6 IQNPESI--FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKDQ---GLEILAFPCNQFGEE   79 (170)
Q Consensus         6 ~~~g~~~--p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~v~~v~is~d~~~~~   79 (170)
                      ...|.++  |+|++.|.+|+.+++++++||++||+||++||++ |+.+++.|+++++++.++   ++.+++|++|.    
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~----   88 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP----   88 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT----
T ss_pred             hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCC----
Confidence            4567775  9999999999999999999999999999999998 999999999999998753   79999999973    


Q ss_pred             CCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHh-ccCC----ccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           80 EPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKS-GKWG----IFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~-~~~~----~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                      +.++.+.+++|++ +++.+|+.+.  +.......-...|... ..|.    ..++.+.|.|++||||++|+|++.+.|..
T Consensus        89 ~~d~~~~~~~~~~-~~~~~~~~l~--~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g~~  165 (200)
T 2b7k_A           89 ARDSPAVLKEYLS-DFHPSILGLT--GTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNY  165 (200)
T ss_dssp             TTCCHHHHHHHHT-TSCTTCEEEE--CCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTC
T ss_pred             CCCCHHHHHHHHH-HcCCCceEEe--CCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCCCC
Confidence            2357899999997 7888887763  1110000000111111 1110    01133557789999999999999998888


Q ss_pred             CchHHHHHHHHHhc
Q 030881          155 SLLSLEHDIKKLLG  168 (170)
Q Consensus       155 ~~~~l~~~l~~~l~  168 (170)
                      +++.+.+.|.++|+
T Consensus       166 ~~~~~~~~i~~~l~  179 (200)
T 2b7k_A          166 DEKTGVDKIVEHVK  179 (200)
T ss_dssp             CTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888877764

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.95  E-value=4.3e-28  Score=174.18  Aligned_cols=144  Identities=15%  Similarity=0.058  Sum_probs=113.5

Q ss_pred             ccccCCcccccceeeCC--CC--CeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCC
Q 030881            4 QFIQNPESIFDLSVKDA--RG--HEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFG   77 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~--~g--~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~   77 (170)
                      ..+..|+++|+|++.+.  +|  +.++++++ +||++||+|| ++||++|+.+++.|++++++|+++++++|+|++|   
T Consensus        19 ~~l~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Is~D---   95 (213)
T 2i81_A           19 SPTYVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERNVELLGCSVD---   95 (213)
T ss_dssp             -CCCBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTTEEEEEEESS---
T ss_pred             ccccCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---
Confidence            35678999999999998  89  89999999 9999999999 9999999999999999999999889999999986   


Q ss_pred             CCCCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe
Q 030881           78 EEEPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY  150 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~  150 (170)
                           +.+.+++|++ ++       +++||++  .|..+....   .|.... .  .|.   ..|++||||++|+|++.+
T Consensus        96 -----~~~~~~~~~~-~~~~~~g~~~~~fp~l--~D~~~~~~~---~ygv~~-~--~g~---~~p~~~lID~~G~i~~~~  158 (213)
T 2i81_A           96 -----SKYTHLAWKK-TPLAKGGIGNIKHTLL--SDITKSISK---DYNVLF-D--DSV---SLRAFVLIDMNGIVQHLL  158 (213)
T ss_dssp             -----CHHHHHHHHS-SCGGGTCCCSCSSEEE--ECTTSHHHH---HTTCEE-T--TTE---ECEEEEEECTTSBEEEEE
T ss_pred             -----CHHHHHHHHH-HHHhhCCccCCCceEE--ECCchHHHH---HhCCcc-c--cCC---cccEEEEECCCCEEEEEE
Confidence                 6788888886 66       7789988  554332221   111110 0  011   455999999999999997


Q ss_pred             CCCC----CchHHHHHHHHHh
Q 030881          151 YPTT----SLLSLEHDIKKLL  167 (170)
Q Consensus       151 ~~~~----~~~~l~~~l~~~l  167 (170)
                      .+..    +.+++.+.|+++.
T Consensus       159 ~~~~~~~~~~~ell~~l~~l~  179 (213)
T 2i81_A          159 VNNLAIGRSVDEILRIIDAIQ  179 (213)
T ss_dssp             EECTTCCCCHHHHHHHHHHHH
T ss_pred             ecCCCCCCCHHHHHHHHHHHH
Confidence            6543    3667888887765

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.95  E-value=7.9e-28  Score=165.91  Aligned_cols=140  Identities=11%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+..|.++|+|++.+.+|+.+++++++||++||+||+ +||++|..+++.|+++++++  .++.+++|+.|        +
T Consensus        15 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~v~vv~is~d--------~   84 (163)
T 1psq_A           15 QLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DNTVVLTVSMD--------L   84 (163)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TTEEEEEEESS--------C
T ss_pred             CCCCCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CCcEEEEEECC--------C
Confidence            4678999999999999999999999999999999995 99999999999999999999  67999999986        6


Q ss_pred             hHHHHHHHHhhcCC-CCCceEEee-cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC-----Cc
Q 030881           84 NDQIADFVCTRFKS-EFPIFEKID-VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT-----SL  156 (170)
Q Consensus        84 ~~~~~~~~~~~~~~-~~p~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~-----~~  156 (170)
                      .+.+++|++ +++. +||++  .| ..+... .  .|......    .++ +.|++||||++|+|++.+.|..     +.
T Consensus        85 ~~~~~~~~~-~~~~~~~~~l--~D~~~~~~~-~--~~gv~~~~----~g~-~~p~~~liD~~G~i~~~~~g~~~~~~~~~  153 (163)
T 1psq_A           85 PFAQKRWCG-AEGLDNAIML--SDYFDHSFG-R--DYALLINE----WHL-LARAVFVLDTDNTIRYVEYVDNINSEPNF  153 (163)
T ss_dssp             HHHHHHHHH-HHTCTTSEEE--ECTTTCHHH-H--HHTCBCTT----TCS-BCCEEEEECTTCBEEEEEECSBTTSCCCH
T ss_pred             HHHHHHHHH-hcCCCCcEEe--cCCchhHHH-H--HhCCcccc----CCc-eEEEEEEEcCCCeEEEEEecCCcCCCCCH
Confidence            788889997 7799 99988  45 332211 1  22111110    011 2359999999999999986532     22


Q ss_pred             hHHHHHHHH
Q 030881          157 LSLEHDIKK  165 (170)
Q Consensus       157 ~~l~~~l~~  165 (170)
                      +++.+.|++
T Consensus       154 ~~~l~~l~~  162 (163)
T 1psq_A          154 EAAIAAAKA  162 (163)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            456666654

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.95  E-value=1.1e-27  Score=167.01  Aligned_cols=147  Identities=10%  Similarity=0.012  Sum_probs=108.9

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++| |++|+.++|.|++++++   .++.+|+|+.|        
T Consensus        16 ~~l~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~v~vv~Is~D--------   84 (175)
T 1xvq_A           16 ELPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SGATVLCVSKD--------   84 (175)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TTCEEEEEESS--------
T ss_pred             CCCCcCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cCCEEEEEECC--------
Confidence            3467899999999999999999999999999999999999 99999999999999998   56999999986        


Q ss_pred             ChHHHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccC-CccCCccccCceeEEECCCCcEEEEeCC--CCCchH
Q 030881           83 SNDQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKW-GIFGDDIQWNFAKFLVDKNGQVVDRYYP--TTSLLS  158 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~p~~~lid~~G~i~~~~~~--~~~~~~  158 (170)
                      +.+.+++|++ +++. +||++  .|.......   .|.....+ +..|   .+.|++||||++|+|++.+.|  .....+
T Consensus        85 ~~~~~~~~~~-~~~~~~~~~l--~D~~~~~~~---~~gv~~~~~~~~g---~~~p~~~lid~~G~I~~~~~g~~~~~~~~  155 (175)
T 1xvq_A           85 LPFAQKRFCG-AEGTENVMPA--SAFRDSFGE---DYGVTIADGPMAG---LLARAIVVIGADGNVAYTELVPEIAQEPN  155 (175)
T ss_dssp             CHHHHTTCC-------CEEEE--ECTTSSHHH---HTTCBBCSSTTTT---SBCSEEEEECTTSBEEEEEECSBTTCCCC
T ss_pred             CHHHHHHHHH-HcCCCCceEe--eCCHHHHHH---HhCCcccccccCC---cccceEEEECCCCeEEEEEECCCcCCCCC
Confidence            6778888886 7788 89988  554432221   12221111 0111   134699999999999999853  334456


Q ss_pred             HHHHHHHHhcCC
Q 030881          159 LEHDIKKLLGLS  170 (170)
Q Consensus       159 l~~~l~~~l~~~  170 (170)
                      +++.|+++.++|
T Consensus       156 ~~~~l~~l~~~~  167 (175)
T 1xvq_A          156 YEAALAALGATS  167 (175)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHhhc
Confidence            888887776543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.95  E-value=8.2e-28  Score=165.75  Aligned_cols=141  Identities=22%  Similarity=0.281  Sum_probs=115.5

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC----------
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ----------   75 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~----------   75 (170)
                      ...|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++++++++  ++.|++|++|.          
T Consensus        11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~v~vv~i~~d~~~~~~~~~~~   88 (165)
T 3ha9_A           11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--EISVIAIDFWTAEALKALGLN   88 (165)
T ss_dssp             HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEECCSHHHHHHHTCC
T ss_pred             ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--CcEEEEEEecccccccccccc
Confidence            457889999999999999999999999999999999999999999999999999998  69999999871          


Q ss_pred             -CCCCCCCChHHHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           76 -FGEEEPGSNDQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        76 -~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                       +.....++.+.+++|.+ +++. +||++  .| .....   ..           +++...|+++|||++|+|++  .|.
T Consensus        89 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~d-~~~~~---~~-----------~~v~~~P~~~lid~~G~i~~--~g~  148 (165)
T 3ha9_A           89 KPGYPPPDTPEMFRKFIA-NYGDPSWIMV--MD-DGSLV---EK-----------FNVRSIDYIVIMDKSSNVLY--AGT  148 (165)
T ss_dssp             STTSCCCCCHHHHHHHHH-HHSCTTSEEE--EC-CSHHH---HH-----------TTCCSSSEEEEEETTCCEEE--EEE
T ss_pred             cccCCCCCCHHHHHHHHH-HcCCCCeeEE--eC-hHHHH---HH-----------hCCCCceEEEEEcCCCcEEE--eCC
Confidence             22333468999999997 7788 99998  44 22111   11           34455569999999999999  566


Q ss_pred             C-CchHHHHHHHHHhc
Q 030881          154 T-SLLSLEHDIKKLLG  168 (170)
Q Consensus       154 ~-~~~~l~~~l~~~l~  168 (170)
                      . +.+++.+.|+++++
T Consensus       149 ~~~~~~l~~~l~~l~~  164 (165)
T 3ha9_A          149 TPSLGELESVIKSVQG  164 (165)
T ss_dssp             SCCHHHHHHHHHHC--
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            6 78889999998875

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.95  E-value=1.1e-27  Score=165.56  Aligned_cols=142  Identities=13%  Similarity=0.077  Sum_probs=106.9

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+..|+++|+|++.+.+|+.+++++++||++||+|| ++||++|..+++.|+++++++  +++++++||.|        +
T Consensus        16 ~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~v~vv~Is~d--------~   85 (165)
T 1q98_A           16 FPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SNTIVLCISAD--------L   85 (165)
T ss_dssp             CCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TTEEEEEEESS--------C
T ss_pred             cCCCCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CCCEEEEEeCC--------C
Confidence            467899999999999999999999999999999999 799999999999999999999  67999999986        6


Q ss_pred             hHHHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccC-CccCCccccCceeEEECCCCcEEEEeCC--CCCchHH
Q 030881           84 NDQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKW-GIFGDDIQWNFAKFLVDKNGQVVDRYYP--TTSLLSL  159 (170)
Q Consensus        84 ~~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~i~~~p~~~lid~~G~i~~~~~~--~~~~~~l  159 (170)
                      .+.+++|++ ++++ +||++  .|........  .|...... ...|  + +.|++||||++|+|++.+.|  .....++
T Consensus        86 ~~~~~~~~~-~~~~~~~~~l--~D~~~~~~~~--~~gv~~~~~~~~g--~-~~p~~~liD~~G~i~~~~~~~~~~~~~~~  157 (165)
T 1q98_A           86 PFAQARFCG-AEGIENAKTV--STFRNHALHS--QLGVDIQTGPLAG--L-TSRAVIVLDEQNNVLHSQLVEEIKEEPNY  157 (165)
T ss_dssp             HHHHTTCTT-TTTCTTEEEE--ECTTCTHHHH--HTTCEECSSTTTT--S-BCCEEEEECTTSBEEEEEECSBTTSCCCH
T ss_pred             HHHHHHHHH-HcCCCceEEe--eccccchHHH--HhCceecccccCC--c-cceeEEEEcCCCEEEEEEeCCCCCCCCCH
Confidence            778888886 7788 79988  4541111111  11111100 0011  1 35699999999999999864  2233345


Q ss_pred             HHHHH
Q 030881          160 EHDIK  164 (170)
Q Consensus       160 ~~~l~  164 (170)
                      ++.|+
T Consensus       158 ~~~l~  162 (165)
T 1q98_A          158 EAALA  162 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.95  E-value=2.2e-27  Score=171.29  Aligned_cols=145  Identities=14%  Similarity=0.074  Sum_probs=111.0

Q ss_pred             ccccCCcccccceeeC---CCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            4 QFIQNPESIFDLSVKD---ARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~---~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      ..+..|+++|+|++.+   .+|+.+++++++||++||+|| ++||++|+.+++.|++++++|+++++++|+|++|     
T Consensus        25 ~~l~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~v~vv~Is~D-----   99 (220)
T 1zye_A           25 PAPAVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD-----   99 (220)
T ss_dssp             --CCTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS-----
T ss_pred             CcccCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            4578999999999985   568999999999999999999 9999999999999999999999889999999987     


Q ss_pred             CCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           80 EPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                         +.+...+|++ ++       +.+||++  .|.......   .|... .. ..|.   ..|++||||++|+|++.+.+
T Consensus       100 ---~~~~~~~~~~-~~~~~~g~~~~~fp~l--~D~~~~i~~---~ygv~-~~-~~g~---~~P~~~liD~~G~I~~~~~g  165 (220)
T 1zye_A          100 ---SHFSHLAWIN-TPRKNGGLGHMNIALL--SDLTKQISR---DYGVL-LE-GPGL---ALRGLFIIDPNGVIKHLSVN  165 (220)
T ss_dssp             ---CHHHHHHHHT-SCGGGTCCCSCSSEEE--ECTTSHHHH---HTTCE-ET-TTTE---ECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHHH-HHHHhCCCcCCceEEE--ECCcHHHHH---HhCCe-ec-CCCc---ccceEEEECCCCEEEEEEec
Confidence               5677888886 55       6789988  554322211   11111 00 0011   34599999999999999766


Q ss_pred             CC----CchHHHHHHHHHh
Q 030881          153 TT----SLLSLEHDIKKLL  167 (170)
Q Consensus       153 ~~----~~~~l~~~l~~~l  167 (170)
                      ..    +.+++.+.|+++.
T Consensus       166 ~~~~~~~~~ell~~l~~l~  184 (220)
T 1zye_A          166 DLPVGRSVEETLRLVKAFQ  184 (220)
T ss_dssp             CTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhh
Confidence            43    3467888887765

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.95  E-value=5.3e-28  Score=167.25  Aligned_cols=127  Identities=18%  Similarity=0.131  Sum_probs=101.1

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|+++|+|++.+.+|+.+++++++||++||+|| ++||++|..+++.|++++++   +++.+++|+.|        
T Consensus        18 ~~l~~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~~~vv~is~d--------   86 (166)
T 3p7x_A           18 QQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EEGIVLTISAD--------   86 (166)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TTSEEEEEESS--------
T ss_pred             ccCCCCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CCCEEEEEECC--------
Confidence            4567999999999999999999999999999999999 78999999999999999888   67999999976        


Q ss_pred             ChHHHHHHHHhhcCC-CCCceEEeec-CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           83 SNDQIADFVCTRFKS-EFPIFEKIDV-NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~p~~~~~d~-~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +.+.+++|++ ++++ +||++  .|. .+. ....|+  ....  ..|.   +.|++||||++|+|++.+.+
T Consensus        87 ~~~~~~~~~~-~~~~~~~~~l--~D~~~~~-~~~~~g--v~~~--~~g~---~~p~~~liD~~G~i~~~~~~  147 (166)
T 3p7x_A           87 LPFAQKRWCA-SAGLDNVITL--SDHRDLS-FGENYG--VVME--ELRL---LARAVFVLDADNKVVYKEIV  147 (166)
T ss_dssp             CHHHHHHHHH-HHTCSSCEEE--ECTTTCH-HHHHHT--CEET--TTTE---ECCEEEEECTTCBEEEEEEC
T ss_pred             CHHHHHHHHH-HcCCCceEEc--cCCchhH-HHHHhC--Cccc--cCCc---eeeEEEEECCCCeEEEEEEc
Confidence            7889999997 7899 89998  565 332 222121  1100  0011   24599999999999998543

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.95  E-value=5.1e-28  Score=185.11  Aligned_cols=145  Identities=21%  Similarity=0.292  Sum_probs=122.9

Q ss_pred             cccCCcccccce-----eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            5 FIQNPESIFDLS-----VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         5 ~~~~g~~~p~f~-----l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      .+..|.++|+|+     +.+.+|+.+++++++||++||+||++||++|+.++|.|++++++++++++.|++|++|.+.. 
T Consensus        50 ~l~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~v~vi~Vs~d~~~~-  128 (352)
T 2hyx_A           50 QLESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVIGVHTPEYAF-  128 (352)
T ss_dssp             SCCCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSGG-
T ss_pred             ccCCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCCeEEEEEECCcccc-
Confidence            467899999999     99999999999999999999999999999999999999999999998899999999874211 


Q ss_pred             CCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHH
Q 030881           80 EPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL  159 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l  159 (170)
                       .++.+.+++|++ +++++||++  .|.......   .           +++...|++||||++|+|++++.|..+.+++
T Consensus       129 -~d~~~~~~~~~~-~~~l~fpv~--~D~~~~l~~---~-----------ygV~~~Pt~~lID~~G~Iv~~~~G~~~~~~l  190 (352)
T 2hyx_A          129 -EKVPGNVAKGAA-NLGISYPIA--LDNNYATWT---N-----------YRNRYWPAEYLIDATGTVRHIKFGEGDYNVT  190 (352)
T ss_dssp             -GGCHHHHHHHHH-HHTCCSCEE--ECTTSHHHH---H-----------TTCCEESEEEEECTTSBEEEEEESBCCHHHH
T ss_pred             -cCCHHHHHHHHH-HcCCCccEE--eCCcHHHHH---H-----------cCCCccCEEEEEeCCCeEEEEEcCCCCHHHH
Confidence             247889999997 889999988  454322111   1           3455556999999999999999998889999


Q ss_pred             HHHHHHHhc
Q 030881          160 EHDIKKLLG  168 (170)
Q Consensus       160 ~~~l~~~l~  168 (170)
                      .+.|+++++
T Consensus       191 ~~~I~~lL~  199 (352)
T 2hyx_A          191 ETLVRQLLN  199 (352)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998875

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.95  E-value=7e-28  Score=164.17  Aligned_cols=143  Identities=15%  Similarity=0.217  Sum_probs=119.6

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++ |++||+||++||++|..+++.|+++++++   ++.+++|++|     ..++
T Consensus         3 ~~l~~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~v~~v~v~~d-----~~~~   73 (154)
T 3ia1_A            3 LAVKPGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---GVPFYVISRE-----PRDT   73 (154)
T ss_dssp             -CCCSBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---CCCEEEEECC-----TTCC
T ss_pred             ccCCCCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---CCeEEEEeCC-----Cccc
Confidence            4578999999999999999999999999 99999999999999999999999999999   6999999985     2358


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.++++++ +++.+||++  .|....... +.     ..     +++...|++||||++|+|++.+.|..+.+++.+.|
T Consensus        74 ~~~~~~~~~-~~~~~~~~~--~d~~~~~~~-~~-----~~-----~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l  139 (154)
T 3ia1_A           74 REVVLEYMK-TYPRFIPLL--ASDRDRPHE-VA-----AR-----FKVLGQPWTFVVDREGKVVALFAGRAGREALLDAL  139 (154)
T ss_dssp             HHHHHHHHT-TCTTEEECB--CCSSCCHHH-HH-----TT-----SSBCSSCEEEEECTTSEEEEEEESBCCHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCCcccc--cccccchHH-HH-----HH-----hCCCcccEEEEECCCCCEEEEEcCCCCHHHHHHHH
Confidence            899999997 889999988  442212111 11     11     34555669999999999999999999999999999


Q ss_pred             HHHhcC
Q 030881          164 KKLLGL  169 (170)
Q Consensus       164 ~~~l~~  169 (170)
                      +++++.
T Consensus       140 ~~~~~~  145 (154)
T 3ia1_A          140 LLAGAD  145 (154)
T ss_dssp             HHTTCC
T ss_pred             HhccCc
Confidence            998864

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.95  E-value=6.2e-28  Score=174.41  Aligned_cols=133  Identities=13%  Similarity=0.145  Sum_probs=103.2

Q ss_pred             cccCCcccccceeeCC---CCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDA---RGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~---~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      .+..|+++|+|+|.+.   +|+++++++++||++||+||+ +||++|+.+++.|++++++|+++|+.||+|++|      
T Consensus        39 ~l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~v~vv~Is~D------  112 (222)
T 3ztl_A           39 VLLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRNCQVIACSTD------  112 (222)
T ss_dssp             -CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             cccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC------
Confidence            4779999999999965   559999999999999999996 999999999999999999999999999999986      


Q ss_pred             CCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           81 PGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                        +.+...+|.+ .+       +.+||++  .|..+....   .|.....  ..|.   ..|++||||++|+|++.+.+.
T Consensus       113 --~~~~~~~~~~-~~~~~~~~~~~~~~~l--~D~~~~~~~---~ygv~~~--~~g~---~~P~~~lID~~G~I~~~~~g~  179 (222)
T 3ztl_A          113 --SQYSHLAWDN-LDRKSGGLGHMKIPLL--ADRKQEISK---AYGVFDE--EDGN---AFRGLFIIDPNGILRQITIND  179 (222)
T ss_dssp             --CHHHHHHHHH-SCGGGTSCCSCSSCEE--ECSSSHHHH---HTTCBCT--TTSS---BCEEEEEECTTSEEEEEEEEC
T ss_pred             --CHHHHHHHHH-HhhhhccccccceeEE--eCCchHHHH---HcCCeec--CCCC---ccceEEEECCCCeEEEEEecC
Confidence              5677788876 54       8899998  554432211   1111100  0011   345999999999999998765


Q ss_pred             CCc
Q 030881          154 TSL  156 (170)
Q Consensus       154 ~~~  156 (170)
                      ...
T Consensus       180 ~~~  182 (222)
T 3ztl_A          180 KPV  182 (222)
T ss_dssp             TTB
T ss_pred             CCC
Confidence            444

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.95  E-value=1.2e-27  Score=170.24  Aligned_cols=144  Identities=13%  Similarity=0.115  Sum_probs=108.9

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|+++|+|++.|.+|+.++|++++||++||+|| ++||++|..+++.|+++++++  +|+++++||.|        
T Consensus        50 ~~l~~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~v~vv~Is~D--------  119 (200)
T 3zrd_A           50 KLPQIGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--ENTVVLCISSD--------  119 (200)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TTEEEEEEESS--------
T ss_pred             ccCCCCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CCCEEEEEECC--------
Confidence            3577999999999999999999999999999999999 689999999999999999999  67999999986        


Q ss_pred             ChHHHHHHHHhhcCC-CCCceEEeec-CCCCchhHHHHhHhccC-CccCCccccCceeEEECCCCcEEEEeCCC--CCch
Q 030881           83 SNDQIADFVCTRFKS-EFPIFEKIDV-NGEHASPLYKLLKSGKW-GIFGDDIQWNFAKFLVDKNGQVVDRYYPT--TSLL  157 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~-~~p~~~~~d~-~~~~~~~~~~~~~~~~~-~~~~~~i~~~p~~~lid~~G~i~~~~~~~--~~~~  157 (170)
                      +.+.+++|++ ++++ +||++  .|. .+.. ...|+  ..... +..  ++ +.|++||||++|+|++.+.+.  ....
T Consensus       120 ~~~~~~~~~~-~~~~~~f~~l--~D~~~~~~-~~~yg--v~~~~~~~~--g~-~~p~~~lID~~G~I~~~~~~~~~~~~~  190 (200)
T 3zrd_A          120 LPFAQSRFCG-AEGLSNVITL--STLRGADF-KQAYG--VAITEGPLA--GL-TARAVVVLDGQDNVIYSELVNEITTEP  190 (200)
T ss_dssp             CHHHHTTCTT-TTTCTTEEEE--ETTSCTHH-HHHTT--CEECSSTTT--TS-BCCEEEEECTTSBEEEEEECSBTTSCC
T ss_pred             CHHHHHHHHH-HcCCCCceEE--ecCchHHH-HHHhC--ceeecccCC--Cc-cccEEEEECCCCeEEEEEecCCcccCC
Confidence            6788888987 7899 99988  555 2221 11111  11000 001  11 356999999999999997543  2233


Q ss_pred             HHHHHHHHH
Q 030881          158 SLEHDIKKL  166 (170)
Q Consensus       158 ~l~~~l~~~  166 (170)
                      ++.+.|+.+
T Consensus       191 ~~~~~l~~L  199 (200)
T 3zrd_A          191 NYDAALAAL  199 (200)
T ss_dssp             CHHHHHHHH
T ss_pred             CHHHHHHhh
Confidence            455555543

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.95  E-value=3.1e-27  Score=157.21  Aligned_cols=135  Identities=16%  Similarity=0.163  Sum_probs=113.6

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      +|.++|+|++.+.+|+.+++++++||++||+||++||++|..+.+.+++++++++  ++.+++|+.+       ++.+.+
T Consensus         1 ~~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~-------~~~~~~   71 (136)
T 1zzo_A            1 TVPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--EVTFVGVAGL-------DQVPAM   71 (136)
T ss_dssp             CCCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS-------SCHHHH
T ss_pred             CCCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--CeEEEEEeCC-------CCHHHH
Confidence            3678999999999999999999999999999999999999999999999999997  6999999987       378899


Q ss_pred             HHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881           88 ADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        88 ~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                      .++.+ +++. +||++  .|.......   .           +++...|+++++|++|+++ .+.|..+.+++.+.|+++
T Consensus        72 ~~~~~-~~~~~~~~~~--~d~~~~~~~---~-----------~~i~~~P~~~~id~~g~i~-~~~g~~~~~~l~~~l~~~  133 (136)
T 1zzo_A           72 QEFVN-KYPVKTFTQL--ADTDGSVWA---N-----------FGVTQQPAYAFVDPHGNVD-VVRGRMSQDELTRRVTAL  133 (136)
T ss_dssp             HHHHH-HTTCTTSEEE--ECTTCHHHH---H-----------TTCCSSSEEEEECTTCCEE-EEESCCCHHHHHHHHHHH
T ss_pred             HHHHH-HcCCCceEEE--EcCCcHHHH---H-----------cCCCCCceEEEECCCCCEE-EEecCCCHHHHHHHHHHH
Confidence            99997 7788 89988  443322111   1           2344455999999999999 888888999999999998


Q ss_pred             hcC
Q 030881          167 LGL  169 (170)
Q Consensus       167 l~~  169 (170)
                      +++
T Consensus       134 l~~  136 (136)
T 1zzo_A          134 TSR  136 (136)
T ss_dssp             C--
T ss_pred             hcC
Confidence            863

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.95  E-value=1.7e-27  Score=168.32  Aligned_cols=141  Identities=18%  Similarity=0.091  Sum_probs=110.1

Q ss_pred             cCCcccccceeeCC--CC--CeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            7 QNPESIFDLSVKDA--RG--HEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         7 ~~g~~~p~f~l~~~--~g--~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      ..|+++|+|++.+.  +|  +.++++++ +||++||+|| ++||++|+.+++.|++++++|+++++.+++|++|      
T Consensus         1 ~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~v~vv~Is~d------   74 (192)
T 2h01_A            1 AFQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD------   74 (192)
T ss_dssp             CCSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS------
T ss_pred             CCCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEeC------
Confidence            36899999999998  99  89999999 9999999999 9999999999999999999999889999999986      


Q ss_pred             CCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           81 PGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                        +.+.+++|.+ ++       +.+||++  .|..+....   .|.... .  .|.   ..|++||||++|+|++.+.|.
T Consensus        75 --~~~~~~~~~~-~~~~~~~~~~~~~~~l--~D~~~~~~~---~~gv~~-~--~g~---~~P~~~liD~~G~i~~~~~g~  140 (192)
T 2h01_A           75 --SKFTHLAWKK-TPLSQGGIGNIKHTLI--SDISKSIAR---SYDVLF-N--ESV---ALRAFVLIDKQGVVQHLLVNN  140 (192)
T ss_dssp             --CHHHHHHHHT-SCGGGTCCCSCSSEEE--ECTTSHHHH---HTTCEE-T--TTE---ECCEEEEECTTSBEEEEEEGG
T ss_pred             --CHHHHHHHHH-hHHhhCCccCCCcCeE--ECCcHHHHH---HhCCcC-c--CCc---eeeEEEEEcCCCEEEEEEeCC
Confidence              6788888886 65       6788988  554322111   111110 0  011   345999999999999997664


Q ss_pred             C----CchHHHHHHHHHh
Q 030881          154 T----SLLSLEHDIKKLL  167 (170)
Q Consensus       154 ~----~~~~l~~~l~~~l  167 (170)
                      .    +.+++.+.|+++.
T Consensus       141 ~~~~~~~~~l~~~l~~l~  158 (192)
T 2h01_A          141 LALGRSVDEILRLIDALQ  158 (192)
T ss_dssp             GSSGGGHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            3    3456777776654

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.95  E-value=6.5e-28  Score=166.73  Aligned_cols=143  Identities=17%  Similarity=0.136  Sum_probs=111.8

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      .+..|+++|+|++.+.+|+.+++++++||++||+||++| |++|+.+++.|+++++++  .++.+++|+.|        +
T Consensus        17 ~~~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~~~vv~is~d--------~   86 (167)
T 2jsy_A           17 EVKVGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GDVNVYTISAD--------L   86 (167)
T ss_dssp             CCCTTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SSCEEEEEECS--------S
T ss_pred             ccCCCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CCCEEEEEECC--------C
Confidence            467899999999999999999999999999999999999 999999999999999999  67999999986        4


Q ss_pred             hHHHHHHHHhhcCC-CCCceEEee-cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-----CCc
Q 030881           84 NDQIADFVCTRFKS-EFPIFEKID-VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-----TSL  156 (170)
Q Consensus        84 ~~~~~~~~~~~~~~-~~p~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-----~~~  156 (170)
                      .+.+++|++ +++. +||++  .| ..+....   .|......    .++ ..|++||||++|+|++.+.|.     .+.
T Consensus        87 ~~~~~~~~~-~~~~~~~~~~--~d~~~~~~~~---~~~v~~~~----~g~-~~p~~~lid~~G~i~~~~~g~~~~~~~~~  155 (167)
T 2jsy_A           87 PFAQARWCG-ANGIDKVETL--SDHRDMSFGE---AFGVYIKE----LRL-LARSVFVLDENGKVVYAEYVSEATNHPNY  155 (167)
T ss_dssp             GGGTSCCGG-GSSCTTEEEE--EGGGTCHHHH---HTTCBBTT----TCS-BCCEEEEECTTSCEEEEEECSBTTSCCCS
T ss_pred             HHHHHHHHH-hcCCCCceEe--eCCchhHHHH---HhCCcccc----CCc-eeeEEEEEcCCCcEEEEEecCCcCCCCCH
Confidence            567778886 7888 89988  45 3222111   11111110    011 135999999999999998542     244


Q ss_pred             hHHHHHHHHHhc
Q 030881          157 LSLEHDIKKLLG  168 (170)
Q Consensus       157 ~~l~~~l~~~l~  168 (170)
                      +++.+.|+++++
T Consensus       156 ~~l~~~l~~llk  167 (167)
T 2jsy_A          156 EKPIEAAKALVK  167 (167)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhhC
Confidence            778888988874

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.95  E-value=2.2e-28  Score=169.45  Aligned_cols=153  Identities=16%  Similarity=0.208  Sum_probs=116.9

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCC-ChhhHHHHHHHHHHhccC---CcEEEEeecCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGM-TNSNYIELSQLYDKYKDQ---GLEILAFPCNQFGEEEP   81 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~v~~v~is~d~~~~~~~   81 (170)
                      ...|.++|+|++.+.+| .+++++++||++||+||++||++ |+.+++.|++++++++++   ++.+++|++|.    ..
T Consensus        10 ~~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~----~~   84 (172)
T 2k6v_A           10 RLLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDP----ER   84 (172)
T ss_dssp             EEEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCT----TT
T ss_pred             cccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECC----CC
Confidence            34688899999999999 99999999999999999999997 999999999999999875   69999999974    34


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHh--ccCC--ccCCccccCceeEEECCCCcEEEEeCCCC--C
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKS--GKWG--IFGDDIQWNFAKFLVDKNGQVVDRYYPTT--S  155 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~--~~~~--~~~~~i~~~p~~~lid~~G~i~~~~~~~~--~  155 (170)
                      ++.+.+++|++ +++.+||++  .|.......-...|...  ..+.  ...+.+.+.|++|||| +|+|++.+.|..  +
T Consensus        85 d~~~~~~~~~~-~~~~~~~~l--~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~  160 (172)
T 2k6v_A           85 DPPEVADRYAK-AFHPSFLGL--SGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEA  160 (172)
T ss_dssp             CCHHHHHHHHH-HHCTTEEEE--CCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTC
T ss_pred             CCHHHHHHHHH-HhCCCcEEE--eCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCC
Confidence            67899999997 789999988  33221000100111100  0000  0002355677999999 999999998877  8


Q ss_pred             chHHHHHHHHHh
Q 030881          156 LLSLEHDIKKLL  167 (170)
Q Consensus       156 ~~~l~~~l~~~l  167 (170)
                      ++++.+.|+++|
T Consensus       161 ~~~l~~~l~~ll  172 (172)
T 2k6v_A          161 TDRVVADLQALL  172 (172)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhC
Confidence            888999888764

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.95  E-value=6.8e-28  Score=165.52  Aligned_cols=132  Identities=11%  Similarity=0.138  Sum_probs=106.0

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCc--EEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGK--VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk--~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      ..+..|+++|+|++.+.+|+.+++++++||  ++||+|| ++||++|+.+++.|+++++++++++ .+++|+.|      
T Consensus         5 ~~~~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~-~vv~is~d------   77 (159)
T 2a4v_A            5 NELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA-AVFGLSAD------   77 (159)
T ss_dssp             TCCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC-EEEEEESC------
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC-cEEEEeCC------
Confidence            457789999999999999999999999887  8999987 8999999999999999999999999 99999986      


Q ss_pred             CCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCc
Q 030881           81 PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL  156 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~  156 (170)
                        +.+.+++|++ +++.+||++  .|..+....   .|.....| .. .   ..|++||| ++|+|++.+.|....
T Consensus        78 --~~~~~~~~~~-~~~~~~~~l--~D~~~~~~~---~~gv~~~p-~~-g---~~~~~~li-~~G~i~~~~~g~~~~  139 (159)
T 2a4v_A           78 --SVTSQKKFQS-KQNLPYHLL--SDPKREFIG---LLGAKKTP-LS-G---SIRSHFIF-VDGKLKFKRVKISPE  139 (159)
T ss_dssp             --CHHHHHHHHH-HHTCSSEEE--ECTTCHHHH---HHTCBSSS-SS-C---BCCEEEEE-ETTEEEEEEESCCHH
T ss_pred             --CHHHHHHHHH-HhCCCceEE--ECCccHHHH---HhCCcccc-cC-C---ccceEEEE-cCCEEEEEEccCCcc
Confidence              6788999997 789999998  554332221   23222222 00 1   23489999 999999998876544

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.95  E-value=4.1e-27  Score=156.84  Aligned_cols=132  Identities=15%  Similarity=0.235  Sum_probs=111.5

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD   89 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~   89 (170)
                      .++|+|++.+.+|+.+++++++||++||+||++||++|..+.+.+++++++++  ++.+++|+++.       +.+.+.+
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~~~~~~~   72 (136)
T 1lu4_A            2 DERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATRA-------DVGAMQS   72 (136)
T ss_dssp             GGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------CHHHHHH
T ss_pred             CCCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--CcEEEEEEcCC-------CHHHHHH
Confidence            46899999999999999999999999999999999999999999999999997  69999999873       6889999


Q ss_pred             HHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC---CCCCchHHHHHHHHH
Q 030881           90 FVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY---PTTSLLSLEHDIKKL  166 (170)
Q Consensus        90 ~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~---~~~~~~~l~~~l~~~  166 (170)
                      +.+ +++.+||++  .|.......   .           +++...|+++++|++|+++ ++.   |..+.+++.+.|+++
T Consensus        73 ~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~i~~~P~~~lid~~G~i~-~~~~~~g~~~~~~l~~~l~~l  134 (136)
T 1lu4_A           73 FVS-KYNLNFTNL--NDADGVIWA---R-----------YNVPWQPAFVFYRADGTST-FVNNPTAAMSQDELSGRVAAL  134 (136)
T ss_dssp             HHH-HHTCCSEEE--ECTTSHHHH---H-----------TTCCSSSEEEEECTTSCEE-EECCSSSCCCHHHHHHHHHHC
T ss_pred             HHH-HcCCCceEE--ECCchhHHH---h-----------cCCCCCCEEEEECCCCcEE-EEEcCCCccCHHHHHHHHHHH
Confidence            997 779999988  453322111   1           2344455999999999999 888   888899999999987


Q ss_pred             hc
Q 030881          167 LG  168 (170)
Q Consensus       167 l~  168 (170)
                      ++
T Consensus       135 l~  136 (136)
T 1lu4_A          135 TS  136 (136)
T ss_dssp             --
T ss_pred             hC
Confidence            64

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.95  E-value=1.5e-27  Score=174.19  Aligned_cols=143  Identities=13%  Similarity=0.114  Sum_probs=107.4

Q ss_pred             ccccCCcccccceeeCC---CCCeecCCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDA---RGHEVDLSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~---~g~~~~l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      ..+..|+++|+|++.+.   +|+.++|++++||++||+||+ +||++|..+++.|++++++|+++|+.+|+||.|     
T Consensus        46 ~~l~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~gv~vv~Is~D-----  120 (240)
T 3qpm_A           46 SKAKISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAINTEVVACSVD-----  120 (240)
T ss_dssp             CSCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTTEEEEEEESS-----
T ss_pred             CcCCCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence            34679999999998754   466999999999999999998 999999999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           80 EPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                         +.+...+|++ ++       +.+||++  .|..+.... .|+  ...  ...|.   ..|++||||++|+|++.+.+
T Consensus       121 ---~~~~~~~~~~-~~~~~~~~~~~~fp~l--~D~~~~v~~-~yg--v~~--~~~g~---~~p~~flID~~G~I~~~~~~  186 (240)
T 3qpm_A          121 ---SQFTHLAWII-TPRKQGGLGPMKIPLL--SDLTHQISK-DYG--VYL--EDQGH---TLRGLFIIDEKGVLRQITMN  186 (240)
T ss_dssp             ---CHHHHHHHHH-SCGGGTCCCSCSSCEE--ECTTSHHHH-HTT--CEE--TTTTE---ECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHHH-HHHhhcCCCCCceeEE--eCchHHHHH-HhC--Ccc--ccCCC---ccceEEEEcCCCeEEEEEec
Confidence               6778888886 54       7889988  565432221 111  100  00011   24599999999999999665


Q ss_pred             CCC----chHHHHHHHH
Q 030881          153 TTS----LLSLEHDIKK  165 (170)
Q Consensus       153 ~~~----~~~l~~~l~~  165 (170)
                      ...    .+++.+.|++
T Consensus       187 ~~~~~~~~~eil~~l~~  203 (240)
T 3qpm_A          187 DLPVGRSVDETLRLVQA  203 (240)
T ss_dssp             CTTBCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHH
Confidence            333    3445555544

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.94  E-value=1.9e-27  Score=164.00  Aligned_cols=133  Identities=14%  Similarity=0.129  Sum_probs=104.2

Q ss_pred             ccCCcccccceee--CCCC--CeecCCC-CCCcEEEEEEe-cCCCCCCh-hhHHHHHHHHHHhccCCcE-EEEeecCCCC
Q 030881            6 IQNPESIFDLSVK--DARG--HEVDLST-YKGKVLLIVNV-ASKCGMTN-SNYIELSQLYDKYKDQGLE-ILAFPCNQFG   77 (170)
Q Consensus         6 ~~~g~~~p~f~l~--~~~g--~~~~l~~-~~gk~~lv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~v~-~v~is~d~~~   77 (170)
                      +..|+++|+|++.  +.+|  +.+++++ ++||++||+|| ++||++|. .+++.|++++++++++|++ +++||.|   
T Consensus         4 ~~~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d---   80 (162)
T 1tp9_A            4 IAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN---   80 (162)
T ss_dssp             CCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS---
T ss_pred             CCCCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC---
Confidence            7899999999986  8999  9999999 89999999999 89999999 9999999999999989999 9999986   


Q ss_pred             CCCCCChHHHHHHHHhhcCC--CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           78 EEEPGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~--~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                           +.+.+++|.+ +++.  +||++  .|.++.... .|+  ........|.++.+.|++|||| +|+|++.+.+.
T Consensus        81 -----~~~~~~~~~~-~~~~~~~~~~l--~D~~~~~~~-~~g--v~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~  146 (162)
T 1tp9_A           81 -----DPFVMKAWAK-SYPENKHVKFL--ADGSATYTH-ALG--LELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG  146 (162)
T ss_dssp             -----CHHHHHHHHH-TCTTCSSEEEE--ECTTSHHHH-HTT--CEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS
T ss_pred             -----CHHHHHHHHH-hcCCCCCeEEE--ECCCchHHH-HcC--cccccccCCCCccceeEEEEEE-CCEEEEEEeeC
Confidence                 6788999997 7788  89998  565433222 111  1100000111112345999999 99999998765

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.94  E-value=1.9e-26  Score=153.35  Aligned_cols=136  Identities=16%  Similarity=0.252  Sum_probs=111.4

Q ss_pred             ccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHH
Q 030881           11 SIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADF   90 (170)
Q Consensus        11 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~   90 (170)
                      ++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.++++++++. .++.+++|+.+...  ..++.+.+.++
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~v~i~~~~~~--~~~~~~~~~~~   77 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG-DDYVVLTVVSPGHK--GEQSEADFKNW   77 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT-TTEEEEEEECTTST--TCCCHHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC-CCcEEEEEEcCCCC--chhhHHHHHHH
Confidence            5899999999999999999999999999999999999999999999999954 46999999654321  24688999999


Q ss_pred             HHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881           91 VCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        91 ~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                      .+ +++. +||++  .|.......   .           +++...|++++||++|+|++.+.|..+.+++.+.|+++
T Consensus        78 ~~-~~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l  137 (138)
T 4evm_A           78 YK-GLDYKNLPVL--VDPSGKLLE---T-----------YGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKEL  137 (138)
T ss_dssp             HT-TCCCTTCCEE--ECTTCHHHH---H-----------TTCCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHC
T ss_pred             Hh-hcCCCCeeEE--ECcchHHHH---H-----------cCcccCCeEEEECCCCcEEEeecCCCcHHHHHHHHHhh
Confidence            97 7788 89988  454332111   1           34455569999999999999999988988899888765

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.94  E-value=5.3e-27  Score=172.49  Aligned_cols=143  Identities=12%  Similarity=0.093  Sum_probs=107.8

Q ss_pred             ccccCCcccccceeeC---CCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            4 QFIQNPESIFDLSVKD---ARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~---~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      ..+..|+++|+|++.+   .+|+.++|++++||++||+|| ++||++|..+++.|++++++|+++|+.+|+||+|     
T Consensus        60 ~~l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~gv~vv~IS~D-----  134 (254)
T 3tjj_A           60 SKAKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVD-----  134 (254)
T ss_dssp             CCCCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             cccCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcCCEEEEEcCC-----
Confidence            4567999999999774   467899999999999999999 8999999999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           80 EPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                         +.+...+|++ ++       +++||++  .|..+....   .|.....  ..|.   ..|++||||++|+|++.+.+
T Consensus       135 ---~~~~~~~~~~-~~~~~~g~~~~~fp~l--~D~~~~va~---~ygv~~~--~~g~---~~p~tflID~~G~I~~~~~~  200 (254)
T 3tjj_A          135 ---SQFTHLAWIN-TPRRQGGLGPIRIPLL--SDLTHQISK---DYGVYLE--DSGH---TLRGLFIIDDKGILRQITLN  200 (254)
T ss_dssp             ---CHHHHHHHHT-SCGGGTSCCSCSSCEE--ECTTSHHHH---HHTCEET--TTTE---ECEEEEEECTTSBEEEEEEE
T ss_pred             ---CHHHHHHHHH-HHHHhcCCccccccee--eCcHHHHHH---HcCCccc--cCCC---ccceEEEECCCCeEEEEEec
Confidence               6778888886 54       6889998  565433222   1211100  0011   23499999999999999665


Q ss_pred             CC----CchHHHHHHHH
Q 030881          153 TT----SLLSLEHDIKK  165 (170)
Q Consensus       153 ~~----~~~~l~~~l~~  165 (170)
                      ..    +.+++.+.|++
T Consensus       201 ~~~~~~~~~eil~~L~a  217 (254)
T 3tjj_A          201 DLPVGRSVDETLRLVQA  217 (254)
T ss_dssp             CTTCCCCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHh
Confidence            33    23445555543

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.94  E-value=6e-27  Score=160.48  Aligned_cols=135  Identities=17%  Similarity=0.275  Sum_probs=109.4

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|+++++++++.++.+++|+.|.        
T Consensus        13 ~~~~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~--------   84 (158)
T 3hdc_A           13 PLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEK--------   84 (158)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSS--------
T ss_pred             cccCCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCH--------
Confidence            457799999999999999999999999999999999999999999999999999999998889999999872        


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCc--hHHHH
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL--LSLEH  161 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~--~~l~~  161 (170)
                        ++.++.+ +++.+||++  .|.......   .           +++...|++||||++|+|++++.|..+.  .++.+
T Consensus        85 --~~~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~G~~~~~~~~~~~  145 (158)
T 3hdc_A           85 --RFPEKYR-RAPVSFNFL--SDATGQVQQ---R-----------YGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVS  145 (158)
T ss_dssp             --SCCGGGG-GCCCSCEEE--ECTTSHHHH---H-----------TTCCSSSEEEEECTTSBEEEEEESCCCTTSHHHHH
T ss_pred             --HHHHHHH-HcCCCceEE--ECchHHHHH---H-----------hCCCCcceEEEEcCCCCEEEEEeCCCccchHHHHH
Confidence              4556775 778999988  454332111   1           3444556999999999999998886543  34555


Q ss_pred             HHHH
Q 030881          162 DIKK  165 (170)
Q Consensus       162 ~l~~  165 (170)
                      .+++
T Consensus       146 ~~~~  149 (158)
T 3hdc_A          146 YLKS  149 (158)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            5544

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.9e-27  Score=167.13  Aligned_cols=146  Identities=14%  Similarity=0.094  Sum_probs=109.4

Q ss_pred             cccCCcccccceeeCC--CC-CeecCCC-CCCcEE-EEEEecCCCCCChh-hHHHHHHHHHHhccCCcE-EEEeecCCCC
Q 030881            5 FIQNPESIFDLSVKDA--RG-HEVDLST-YKGKVL-LIVNVASKCGMTNS-NYIELSQLYDKYKDQGLE-ILAFPCNQFG   77 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~--~g-~~~~l~~-~~gk~~-lv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~v~-~v~is~d~~~   77 (170)
                      .+..|+++|+|++.+.  +| +.+++++ ++||++ |++||++|||+|.. ++|.|++++++|+++|+. +++||.|   
T Consensus        25 ~l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d---  101 (184)
T 3uma_A           25 TIAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVN---  101 (184)
T ss_dssp             CCCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS---
T ss_pred             cCCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECC---
Confidence            4789999999999998  99 9999999 899855 55567999999999 799999999999999999 9999986   


Q ss_pred             CCCCCChHHHHHHHHhhcCCC--CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC-
Q 030881           78 EEEPGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT-  154 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~-  154 (170)
                           +.+..++|++ +++++  ||++  .|.++....   .|.....+...|.+++..|++|||+ +|+|++.+.+.. 
T Consensus       102 -----~~~~~~~f~~-~~~~~~~fp~l--~D~~~~va~---~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~  169 (184)
T 3uma_A          102 -----DLHVMGAWAT-HSGGMGKIHFL--SDWNAAFTK---AIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESP  169 (184)
T ss_dssp             -----CHHHHHHHHH-HHTCTTTSEEE--ECTTCHHHH---HTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSST
T ss_pred             -----CHHHHHHHHH-HhCCCCceEEE--EcCchHHHH---HcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCC
Confidence                 6788899987 77888  9999  666544332   1211111111112233455899996 999999986643 


Q ss_pred             ---CchHHHHHHHH
Q 030881          155 ---SLLSLEHDIKK  165 (170)
Q Consensus       155 ---~~~~l~~~l~~  165 (170)
                         +..+.++.|++
T Consensus       170 g~~~~~~~~~vL~~  183 (184)
T 3uma_A          170 GQATASGAAAMLEL  183 (184)
T ss_dssp             TCCSTTSHHHHHHH
T ss_pred             CCCcCCCHHHHHhh
Confidence               23445555554

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.94  E-value=1.2e-26  Score=167.77  Aligned_cols=150  Identities=13%  Similarity=0.123  Sum_probs=108.9

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCc--EEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGK--VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk--~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .+..|+++|+|++.+.+| .+++++++||  .+|++||++||++|..+++.|++++++|+++|+++|+||+|        
T Consensus         4 ~l~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~IS~D--------   74 (224)
T 1prx_A            4 GLLLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID--------   74 (224)
T ss_dssp             -CCTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------
T ss_pred             cCCCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCCCEEEEEcCC--------
Confidence            478999999999999999 9999999887  45666689999999999999999999999999999999997        


Q ss_pred             ChHHHHHHHHh-----h----cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           83 SNDQIADFVCT-----R----FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        83 ~~~~~~~~~~~-----~----~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                      +.+...+|.+.     .    ++++||++  .|..+..+. .|+.......+..|. .-..|++||||++|+|++.+.+.
T Consensus        75 ~~~~~~~~~~~i~~~~~~~~~~~~~fpil--~D~~~~va~-~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I~~~~~~~  150 (224)
T 1prx_A           75 SVEDHLAWSKDINAYNSEEPTEKLPFPII--DDRNRELAI-LLGMLDPAEKDEKGM-PVTARVVFVFGPDKKLKLSILYP  150 (224)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCCSCCSSCEE--ECTTCHHHH-HTTSSCSCTTCSSSC-CTTCCEEEEECTTSBEEEEEECC
T ss_pred             CHHHHHHHHHHHHHhhCcccccCcCccee--ecCchHHHH-HhCCCCcccccCCCc-cccceEEEEECCCCEEEEEEecC
Confidence            55666777752     1    68899999  564433222 122110000000010 11245999999999999997543


Q ss_pred             C----CchHHHHHHHHHh
Q 030881          154 T----SLLSLEHDIKKLL  167 (170)
Q Consensus       154 ~----~~~~l~~~l~~~l  167 (170)
                      .    +.+++.+.|+++.
T Consensus       151 ~~~gr~~~eil~~i~~l~  168 (224)
T 1prx_A          151 ATTGRNFDEILRVVISLQ  168 (224)
T ss_dssp             TTBCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            2    4567777777664

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.94  E-value=6.5e-27  Score=160.81  Aligned_cols=139  Identities=17%  Similarity=0.143  Sum_probs=112.0

Q ss_pred             CcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881            9 PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus         9 g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      |..+|  ++.+.+|+.+++++++||++||+||++||++|+.+.|.|++++++++..++.+|+|++|...  ..++.+++.
T Consensus        17 ~~~~p--~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~--~~~~~~~~~   92 (164)
T 2h30_A           17 PHTMS--TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFL--HEKKDGEFQ   92 (164)
T ss_dssp             HHHHT--TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTTSEEEEEECTTST--TCCCTTHHH
T ss_pred             CCcCC--ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCcEEEEEEcCCCc--cccCHHHHH
Confidence            34444  88899999999999999999999999999999999999999999998889999999997432  234677888


Q ss_pred             HHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881           89 DFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus        89 ~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      +|.. +++.. +++.  .|.......   .           +++...|++||||++|++++.+.|..+.+++.+.|++++
T Consensus        93 ~~~~-~~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~~~  155 (164)
T 2h30_A           93 KWYA-GLNYPKLPVV--TDNGGTIAQ---N-----------LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRNPN  155 (164)
T ss_dssp             HHHT-TSCCTTSCEE--ECTTCHHHH---H-----------TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTT
T ss_pred             HHHH-hCCCCcceEE--EcCchHHHH---H-----------cCCCccceEEEECCCCcEEEEEcCCCCHHHHHHHHHHHH
Confidence            8886 55666 6766  443322111   1           234445599999999999999999889999999999887


Q ss_pred             c
Q 030881          168 G  168 (170)
Q Consensus       168 ~  168 (170)
                      +
T Consensus       156 ~  156 (164)
T 2h30_A          156 A  156 (164)
T ss_dssp             C
T ss_pred             H
Confidence            5

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.94  E-value=1.5e-26  Score=159.81  Aligned_cols=137  Identities=17%  Similarity=0.218  Sum_probs=112.5

Q ss_pred             cccCCcccccceeeCC--CCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDA--RGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~--~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      .+..|+++|+|++.+.  +|+.++++++ +||++||+||++||++|+.+.|.|++++++    ++.+++|+++.      
T Consensus        21 ~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~v~vv~v~~~~------   90 (168)
T 2b1k_A           21 SALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----GIRVVGMNYKD------   90 (168)
T ss_dssp             CTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----TCCEEEEEESC------
T ss_pred             ccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----CCEEEEEECCC------
Confidence            4578999999999999  9999999985 999999999999999999999999998876    69999999873      


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                       +.+.+.+|.+ +++.+||.+. .|......   ..|           ++...|++|+||++|+|++.+.|..+.+.+.+
T Consensus        91 -~~~~~~~~~~-~~~~~~~~~~-~d~~~~~~---~~~-----------~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~  153 (168)
T 2b1k_A           91 -DRQKAISWLK-ELGNPYALSL-FDGDGMLG---LDL-----------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWEE  153 (168)
T ss_dssp             -CHHHHHHHHH-HHCCCCSEEE-EETTCHHH---HHH-----------TCCSSSEEEEECTTSBEEEEEESCCCHHHHHH
T ss_pred             -ChHHHHHHHH-HcCCCCceee-ECcchHHH---HHc-----------CccccCEEEEECCCCeEEEEEeCCCCHHHHHH
Confidence             7788999987 7799998532 34332211   122           23344599999999999999999888988888


Q ss_pred             HHHHHhc
Q 030881          162 DIKKLLG  168 (170)
Q Consensus       162 ~l~~~l~  168 (170)
                      .|+++++
T Consensus       154 ~l~~~l~  160 (168)
T 2b1k_A          154 EIKPLWE  160 (168)
T ss_dssp             TTHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.94  E-value=1e-26  Score=161.93  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=108.7

Q ss_pred             ccccCCcccccceee-CCCCCeecCCC-CCCcEEEEE-EecCCCCCCh-hhHHHHHHHHHHhccCCcEEEE-eecCCCCC
Q 030881            4 QFIQNPESIFDLSVK-DARGHEVDLST-YKGKVLLIV-NVASKCGMTN-SNYIELSQLYDKYKDQGLEILA-FPCNQFGE   78 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~-~~~g~~~~l~~-~~gk~~lv~-f~~~~C~~C~-~~~~~l~~~~~~~~~~~v~~v~-is~d~~~~   78 (170)
                      ..+..|+++|+|+|. +.+|+.++|++ ++||++||+ ||++|||+|. .+++.|++++++|+++|+.+|+ ||.|    
T Consensus        13 ~~~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D----   88 (173)
T 3mng_A           13 APIKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN----   88 (173)
T ss_dssp             CCCCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS----
T ss_pred             CCCCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCC----
Confidence            457799999999999 99999999999 599966655 5599999999 5999999999999999999997 9986    


Q ss_pred             CCCCChHHHHHHHHhhcCCC--CCceEEeecCCCCchhHHHHhHhccC---CccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           79 EEPGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHASPLYKLLKSGKW---GIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                          +.+..++|++ +++.+  ||++  .|..+..+.   .|......   +..| .....|++|||| +|+|++.+.+.
T Consensus        89 ----~~~~~~~f~~-~~~~~~~fp~l--~D~~~~va~---~yGv~~~~~~~~~~g-~~~~~r~tfvID-dG~I~~~~v~~  156 (173)
T 3mng_A           89 ----DAFVTGEWGR-AHKAEGKVRLL--ADPTGAFGK---ETDLLLDDSLVSIFG-NRRLKRFSMVVQ-DGIVKALNVEP  156 (173)
T ss_dssp             ----CHHHHHHHHH-HTTCTTTCEEE--ECTTCHHHH---HHTCBCCSTTHHHHS-SCCBCCEEEEEE-TTEEEEEEECT
T ss_pred             ----CHHHHHHHHH-HhCCCCceEEE--ECCChHHHH---HhCCCcccccccccC-CcceEEEEEEEE-CCEEEEEEEeC
Confidence                6788899997 77887  9999  666544332   22111100   0011 122345999999 99999997664


Q ss_pred             C----CchHHHHHHHH
Q 030881          154 T----SLLSLEHDIKK  165 (170)
Q Consensus       154 ~----~~~~l~~~l~~  165 (170)
                      .    +..+.++.|++
T Consensus       157 ~~~g~~~~~~~~vl~~  172 (173)
T 3mng_A          157 DGTGLTCSLAPNIISQ  172 (173)
T ss_dssp             TSSCSSTTSHHHHHHH
T ss_pred             CCCCcchHHHHHHHHh
Confidence            3    23445555544

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.89  E-value=1.5e-28  Score=168.58  Aligned_cols=141  Identities=17%  Similarity=0.279  Sum_probs=112.7

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHH-HHHHhc-cCCcEEEEeecCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQ-LYDKYK-DQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~-~~~~~~-~~~v~~v~is~d~~~~~~~   81 (170)
                      ..+..|.++|+|++.+.+|+.+++++++||++||+||++||++|+.+++.|++ ++++++ +.++.+++|++|.      
T Consensus         5 ~~l~~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~------   78 (159)
T 2ls5_A            5 YIVRIGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDE------   78 (159)
Confidence            45779999999999999999999999999999999999999999999999998 999998 6789999999873      


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                       +.+.+++|.+ +++.+||++  .|..+.... .|..           .+...|++||||++|+|++.+.| .+++++.+
T Consensus        79 -~~~~~~~~~~-~~~~~~~~~--~d~~~~~~~-~~~~-----------~~~~~P~~~lid~~G~i~~~~~g-~~~~~l~~  141 (159)
T 2ls5_A           79 -PLEKVLAFAK-STGVTYPLG--LDPGADIFA-KYAL-----------RDAGITRNVLIDREGKIVKLTRL-YNEEEFAS  141 (159)
Confidence             4567788886 789999998  454433222 1111           11223499999999999999877 45666777


Q ss_pred             HHHHHh
Q 030881          162 DIKKLL  167 (170)
Q Consensus       162 ~l~~~l  167 (170)
                      .|+++.
T Consensus       142 ~l~~l~  147 (159)
T 2ls5_A          142 LVQQIN  147 (159)
Confidence            776654

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.94  E-value=1e-26  Score=161.11  Aligned_cols=132  Identities=11%  Similarity=0.160  Sum_probs=102.9

Q ss_pred             ccCCcccccceee-CCCCCeecCCCC-CCcEEEEEEe-cCCCCCChh-hHHHHHHHHHHhccCCc-EEEEeecCCCCCCC
Q 030881            6 IQNPESIFDLSVK-DARGHEVDLSTY-KGKVLLIVNV-ASKCGMTNS-NYIELSQLYDKYKDQGL-EILAFPCNQFGEEE   80 (170)
Q Consensus         6 ~~~g~~~p~f~l~-~~~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~~-~~~~l~~~~~~~~~~~v-~~v~is~d~~~~~~   80 (170)
                      +..|+++|+|++. +.+|+.++|+++ +||++||+|| ++|||+|.. ++|.|++++++|+++|+ .+++||.|      
T Consensus         3 l~~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d------   76 (167)
T 2wfc_A            3 IKEGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVN------   76 (167)
T ss_dssp             CCTTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESS------
T ss_pred             CCCCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCC------
Confidence            6789999999999 999999999998 9999999886 999999999 99999999999999999 99999986      


Q ss_pred             CCChHHHHHHHHhhcCCC--CCceEEeecCCCCchhHHHHhHhcc-CCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           81 PGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHASPLYKLLKSGK-WGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                        +.+.+++|++ +++++  ||++  .|..+....   .|..... +..+| .....|++||| ++|+|++.+.+.
T Consensus        77 --~~~~~~~~~~-~~~~~~~fp~l--~D~~~~~~~---~~gv~~~~~~~~g-~~~~~p~t~lI-~~G~I~~~~~~~  142 (167)
T 2wfc_A           77 --DSFVMDAWGK-AHGADDKVQML--ADPGGAFTK---AVDMELDLSAVLG-NVRSKRYSLVI-EDGVVTKVNVEP  142 (167)
T ss_dssp             --CHHHHHHHHH-HTTCTTTSEEE--ECTTSHHHH---HTTCEECCHHHHS-SCEECCEEEEE-ETTEEEEEEECT
T ss_pred             --CHHHHHHHHH-hcCCCcceEEE--ECCCCcHHH---HcCCccccccccC-cccceEEEEEE-eCCEEEEEEecC
Confidence              6788899997 77888  9998  565433222   1111100 00000 01123599999 999999997654

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.94  E-value=1.6e-26  Score=157.49  Aligned_cols=139  Identities=17%  Similarity=0.214  Sum_probs=110.6

Q ss_pred             ccccCCcccccceeeCCCC--------CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCC
Q 030881            4 QFIQNPESIFDLSVKDARG--------HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g--------~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~   75 (170)
                      ..+..|.++|+|++.+.+|        +.+++++++||++||+||++||++|..+.+.|++++++   .++.+++|+++ 
T Consensus         6 ~~~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~---~~v~~v~v~~~-   81 (156)
T 1kng_A            6 PSALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD---KRFQLVGINYK-   81 (156)
T ss_dssp             ------CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC---TTSEEEEEEES-
T ss_pred             hhHHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc---CCeEEEEEECC-
Confidence            3467899999999999999        99999999999999999999999999999999998876   34999999987 


Q ss_pred             CCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881           76 FGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS  155 (170)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~  155 (170)
                            ++.+.+.+|.+ +++.+||.+. .|......   ..           +++...|++|+||++|++++.+.|..+
T Consensus        82 ------~~~~~~~~~~~-~~~~~~~~~~-~d~~~~~~---~~-----------~~v~~~P~~~~id~~G~i~~~~~g~~~  139 (156)
T 1kng_A           82 ------DAADNARRFLG-RYGNPFGRVG-VDANGRAS---IE-----------WGVYGVPETFVVGREGTIVYKLVGPIT  139 (156)
T ss_dssp             ------CCHHHHHHHHH-HHCCCCSEEE-EETTSHHH---HH-----------TTCCSSCEEEEECTTSBEEEEEESCCC
T ss_pred             ------CCHHHHHHHHH-HcCCCCceee-eCchhHHH---Hh-----------cCcCccCeEEEEcCCCCEEEEEeCCCC
Confidence                  37889999997 7799999432 44332211   11           234445599999999999999999888


Q ss_pred             chHHHHHHHHHhc
Q 030881          156 LLSLEHDIKKLLG  168 (170)
Q Consensus       156 ~~~l~~~l~~~l~  168 (170)
                      .+++.+.|+++++
T Consensus       140 ~~~l~~~l~~~l~  152 (156)
T 1kng_A          140 PDNLRSVLLPQME  152 (156)
T ss_dssp             HHHHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8889888888775

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.94  E-value=2e-26  Score=167.41  Aligned_cols=149  Identities=13%  Similarity=0.196  Sum_probs=110.3

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCc-EEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGK-VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      +..|+++|+|++.+.+| .+++++++|| ++||+|| ++||++|..+++.|++++++|+++|+++|+||+|        +
T Consensus         3 l~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~v~vigIS~D--------~   73 (233)
T 2v2g_A            3 ITLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRGVKLIALSCD--------N   73 (233)
T ss_dssp             CCTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS--------C
T ss_pred             CCCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcCCEEEEEcCC--------C
Confidence            67899999999999999 8999999997 9999998 8999999999999999999999999999999997        5


Q ss_pred             hHHHHHHHHh-----hc--CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--
Q 030881           84 NDQIADFVCT-----RF--KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--  154 (170)
Q Consensus        84 ~~~~~~~~~~-----~~--~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--  154 (170)
                      .+...+|++.     ++  +++||++  .|..+..+. .|+.......+..|. ....|++||||++|+|++.+.+..  
T Consensus        74 ~~~~~~~~~~i~~~~~~~~~~~fpil--~D~~~~va~-~ygv~~~~~~~~~g~-~~~~p~~fiID~~G~I~~~~~~~~~~  149 (233)
T 2v2g_A           74 VADHKEWSEDVKCLSGVKGDMPYPII--ADETRELAV-KLGMVDPDERTSTGM-PLTCRAVFIIGPDKKLKLSILYPATT  149 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSCSSCEE--ECTTCHHHH-HTTCEEEEEECTTCC-EEECEEEEEECTTSBEEEEEEECTTB
T ss_pred             HHHHHHHHHHHHHhhCcccCCceEEE--ECChHHHHH-HhCCcCcccccCCCc-ccccceEEEECCCCEEEEEEecCCCC
Confidence            6667777752     45  7899999  565433222 121110000000000 012459999999999999975422  


Q ss_pred             --CchHHHHHHHHHh
Q 030881          155 --SLLSLEHDIKKLL  167 (170)
Q Consensus       155 --~~~~l~~~l~~~l  167 (170)
                        +.+++.+.|+++.
T Consensus       150 gr~~~eilr~l~~Lq  164 (233)
T 2v2g_A          150 GRNFSEILRVIDSLQ  164 (233)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence              4566777777654

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.93  E-value=2e-25  Score=160.31  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=108.4

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCC-CCCCh-----hhHHHHHHHHHHhccCCcEEEEeecCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASK-CGMTN-----SNYIELSQLYDKYKDQGLEILAFPCNQFG   77 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~-C~~C~-----~~~~~l~~~~~~~~~~~v~~v~is~d~~~   77 (170)
                      ..+..|+++|+|+|.+.+|+.++|++++||++||+||++| ||+|.     .+++.|+++   +  +|+.|++||.|   
T Consensus        20 ~~l~vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~gv~VvgIS~D---   91 (224)
T 3keb_A           20 DFPRKGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PHLKLIVITVD---   91 (224)
T ss_dssp             CCCCTTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TTSEEEEEESS---
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CCCEEEEEECC---
Confidence            4578999999999999999999999999999999999887 99999     888888877   5  67999999986   


Q ss_pred             CCCCCChHHHHHHHHhhcCC-CCCceEEeecC-CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC---
Q 030881           78 EEEPGSNDQIADFVCTRFKS-EFPIFEKIDVN-GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP---  152 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~-~~p~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~---  152 (170)
                           +....++|++ ++++ +||++  .|.. +... ..|+...... ...|..   .|++||||++|+|++.+..   
T Consensus        92 -----s~~~~~~f~~-~~gl~~fplL--sD~~~~~va-k~yGv~~~~~-~~~G~~---~p~tfvID~dG~I~~~~~~~~~  158 (224)
T 3keb_A           92 -----SPSSLARARH-EHGLPNIALL--STLRGRDFH-KRYGVLITEY-PLSGYT---SPAIILADAANVVHYSERLANT  158 (224)
T ss_dssp             -----CHHHHHHHHH-HHCCTTCEEE--ESTTCTTHH-HHTTCBCCST-TSTTCB---CCEEEEECTTCBEEEEEECSBT
T ss_pred             -----CHHHHHHHHH-HcCCCCceEE--EcCCchHHH-HHhCCccccc-cccCCc---cCEEEEEcCCCEEEEEEecCCC
Confidence                 7888999997 7788 79999  6653 3322 2222111000 011112   3499999999999998542   


Q ss_pred             --CCCchHHHHHHHHHh
Q 030881          153 --TTSLLSLEHDIKKLL  167 (170)
Q Consensus       153 --~~~~~~l~~~l~~~l  167 (170)
                        ..+.+++.+.|+.+.
T Consensus       159 ~~~pd~~evl~~L~~l~  175 (224)
T 3keb_A          159 RDFFDFDAIEKLLQEGE  175 (224)
T ss_dssp             TCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhh
Confidence              345667777777664

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.93  E-value=3e-26  Score=165.31  Aligned_cols=149  Identities=15%  Similarity=0.221  Sum_probs=108.0

Q ss_pred             ccCCcccccceeeCC--CCCeecCCCCCCc-EEE-EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDA--RGHEVDLSTYKGK-VLL-IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~--~g~~~~l~~~~gk-~~l-v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      +..|+++|+|++.+.  +| .+++++++|| ++| ++||++||++|..+++.|++++++|+++|+++|+||+|       
T Consensus         3 l~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~v~vi~vS~D-------   74 (220)
T 1xcc_A            3 YHLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN-------   74 (220)
T ss_dssp             CCTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS-------
T ss_pred             CCCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC-------
Confidence            678999999999999  99 8999999998 554 45589999999999999999999999999999999997       


Q ss_pred             CChHHHHHHHH------hhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC--
Q 030881           82 GSNDQIADFVC------TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT--  153 (170)
Q Consensus        82 ~~~~~~~~~~~------~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~--  153 (170)
                       +.+...+|.+      .+++++||++  .|..+..+. .|+.......+..|. ....|++||||++|+|++.+.+.  
T Consensus        75 -~~~~~~~~~~~i~~~~~~~~~~fpil--~D~~~~va~-~ygv~~~~~~~~~g~-~~~~p~~flID~~G~I~~~~~~~~~  149 (220)
T 1xcc_A           75 -SKESHDKWIEDIKYYGKLNKWEIPIV--CDESRELAN-KLKIMDEQEKDITGL-PLTCRCLFFISPEKKIKATVLYPAT  149 (220)
T ss_dssp             -CHHHHHHHHHHHHHHHTCSCCCCCEE--ECTTSHHHH-HHTCEEEEEECTTSC-EEECEEEEEECTTSBEEEEEEECTT
T ss_pred             -CHHHHHHHHHHHHHHhcCCCCcceeE--ECchhHHHH-HhCCCCcccccCCCC-CcccceEEEECCCCEEEEEEecCCC
Confidence             4556666664      2478899999  565443222 222110000000000 01245999999999999997532  


Q ss_pred             --CCchHHHHHHHHHh
Q 030881          154 --TSLLSLEHDIKKLL  167 (170)
Q Consensus       154 --~~~~~l~~~l~~~l  167 (170)
                        .+.+++.+.|+++.
T Consensus       150 ~g~~~~ell~~i~~lq  165 (220)
T 1xcc_A          150 TGRNAHEILRVLKSLQ  165 (220)
T ss_dssp             BCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence              35667777777664

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.93  E-value=8.6e-26  Score=161.50  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=111.2

Q ss_pred             cccccCCcccccce----eeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCC
Q 030881            3 SQFIQNPESIFDLS----VKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFG   77 (170)
Q Consensus         3 ~~~~~~g~~~p~f~----l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~   77 (170)
                      ...+..|++||+|+    +.|.+|+.++|++++||++||+|| +.||+.|..++..|++.+++|++.|+++++||.|   
T Consensus        23 ~~~~~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g~~vigiS~D---   99 (219)
T 3tue_A           23 CGNAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELNCEVLACSID---   99 (219)
T ss_dssp             -CCCCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTTEEEEEEESS---
T ss_pred             ccccccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCCcEEEEeeCC---
Confidence            34467999999999    457788999999999999999999 7999999999999999999999999999999997   


Q ss_pred             CCCCCChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC
Q 030881           78 EEEPGSNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY  151 (170)
Q Consensus        78 ~~~~~~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~  151 (170)
                           +.....+|..+.      .+++||++  .|..+.... .|++...    ..|...+   .+||||++|+|++.+.
T Consensus       100 -----s~~sh~~w~~~~~~~~~~~~l~fpll--sD~~~~va~-~yGv~~~----~~g~~~R---~tFiIDp~g~Ir~~~~  164 (219)
T 3tue_A          100 -----SEYAHLQWTLQDRKKGGLGTMAIPIL--ADKTKNIAR-SYGVLEE----SQGVAYR---GLFIIDPHGMLRQITV  164 (219)
T ss_dssp             -----CHHHHHHHHHSCGGGTCCCSCSSCEE--ECTTSHHHH-HTTCEET----TTTEECE---EEEEECTTSBEEEEEE
T ss_pred             -----chhhHHHHhhhhHHhcCccccccccc--cCcccHHHH-HcCCccc----CCCeeEE---EEEEECCCCeEEEEEE
Confidence                 778888887532      25789999  676655433 2332211    1123344   8899999999999852


Q ss_pred             -CC---CCchHHHHHHHHH
Q 030881          152 -PT---TSLLSLEHDIKKL  166 (170)
Q Consensus       152 -~~---~~~~~l~~~l~~~  166 (170)
                       ..   .+.+++.+.|+++
T Consensus       165 ~~~~~gr~~~EvLr~l~aL  183 (219)
T 3tue_A          165 NDMPVGRSVEEVLRLLEAF  183 (219)
T ss_dssp             ECTTCCCCHHHHHHHHHHH
T ss_pred             ecCCCCCCHHHHHHHHHHh
Confidence             22   2445555555544

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.5e-25  Score=159.93  Aligned_cols=143  Identities=17%  Similarity=0.230  Sum_probs=108.8

Q ss_pred             ccCCcccccceee---CCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            6 IQNPESIFDLSVK---DARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         6 ~~~g~~~p~f~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      +.+|++||+|++.   |.++++++|++++||++||+|| +.||++|..+++.|++.+++|++.|+++++||.|       
T Consensus        23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g~~vigiS~D-------   95 (216)
T 3sbc_A           23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQGAQVLFASTD-------   95 (216)
T ss_dssp             CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCCceEEEeecC-------
Confidence            5789999999976   5667899999999999999999 8999999999999999999999999999999997       


Q ss_pred             CChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC--
Q 030881           82 GSNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT--  153 (170)
Q Consensus        82 ~~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~--  153 (170)
                       +.....+|....      .+++||++  .|..+.... .|+....    ..|...+   .+||||++|+|++.....  
T Consensus        96 -s~~sh~aw~~~~~~~~~~~~l~fpll--sD~~~~vak-~YGv~~~----~~g~~~R---~tFiID~~G~Ir~~~v~~~~  164 (216)
T 3sbc_A           96 -SEYSLLAWTNIPRKEGGLGPINIPLL--ADTNHSLSR-DYGVLIE----EEGVALR---GLFIIDPKGVIRHITINDLP  164 (216)
T ss_dssp             -CHHHHHHHHTSCGGGTCCCSCSSCEE--ECTTSHHHH-HHTCEET----TTTEECE---EEEEECTTSBEEEEEEECTT
T ss_pred             -chhhHHHHHHHHHHhCCccCcccceE--eCCCCHHHH-HcCCeec----cCCceee---EEEEECCCCeEEEEEEcCCC
Confidence             778888887521      14789999  676655433 2332211    1123344   899999999999984222  


Q ss_pred             --CCchHHHHHHHHH
Q 030881          154 --TSLLSLEHDIKKL  166 (170)
Q Consensus       154 --~~~~~l~~~l~~~  166 (170)
                        .+.+++.+.|+++
T Consensus       165 ~grn~dEiLr~l~Al  179 (216)
T 3sbc_A          165 VGRNVDEALRLVEAF  179 (216)
T ss_dssp             BCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHh
Confidence              2445555555543

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.92  E-value=1e-25  Score=156.60  Aligned_cols=133  Identities=15%  Similarity=0.184  Sum_probs=99.0

Q ss_pred             cCCcccccceeeCC----CC-----CeecCCCC-CCc-EEEEEEecCCCCCChhh-HHHHHHHHHHhccCCcE-EEEeec
Q 030881            7 QNPESIFDLSVKDA----RG-----HEVDLSTY-KGK-VLLIVNVASKCGMTNSN-YIELSQLYDKYKDQGLE-ILAFPC   73 (170)
Q Consensus         7 ~~g~~~p~f~l~~~----~g-----~~~~l~~~-~gk-~~lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~v~-~v~is~   73 (170)
                      ..|.++|+|++.+.    +|     +.++++++ +|| ++|++||++|||+|+.+ +|.|++++++|+++|+. +++||.
T Consensus         8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~   87 (171)
T 2pwj_A            8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAI   87 (171)
T ss_dssp             --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEES
T ss_pred             cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeC
Confidence            35669999999998    57     89999996 995 67778999999999999 99999999999999999 999998


Q ss_pred             CCCCCCCCCChHHHHHHHHhhcCC--CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC
Q 030881           74 NQFGEEEPGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY  151 (170)
Q Consensus        74 d~~~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~  151 (170)
                      |        +.+..++|++ ++++  +||++  .|..+....   .|.....+...+.++...|++|+|| +|+|++.+.
T Consensus        88 d--------~~~~~~~~~~-~~~~~~~fp~l--~D~~~~~~~---~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~  152 (171)
T 2pwj_A           88 N--------DPYTVNAWAE-KIQAKDAIEFY--GDFDGSFHK---SLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNV  152 (171)
T ss_dssp             S--------CHHHHHHHHH-HTTCTTTSEEE--ECTTCHHHH---HHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEE
T ss_pred             C--------CHHHHHHHHH-HhCCCCceEEE--ECCccHHHH---HhCCccccccccCCcccceeEEEEE-CCEEEEEEe
Confidence            6        5678889987 6775  79988  665544332   2221111100111222234789999 999999987


Q ss_pred             CCC
Q 030881          152 PTT  154 (170)
Q Consensus       152 ~~~  154 (170)
                      +..
T Consensus       153 ~~~  155 (171)
T 2pwj_A          153 EES  155 (171)
T ss_dssp             CSS
T ss_pred             ecC
Confidence            653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.92  E-value=1.2e-25  Score=164.07  Aligned_cols=135  Identities=18%  Similarity=0.189  Sum_probs=104.5

Q ss_pred             ccCCcccccceeeCC-CCC--eecCCC-CCCcEEEEEEe-cCCCCCCh-hhHHHHHHHHHHhccCCc-EEEEeecCCCCC
Q 030881            6 IQNPESIFDLSVKDA-RGH--EVDLST-YKGKVLLIVNV-ASKCGMTN-SNYIELSQLYDKYKDQGL-EILAFPCNQFGE   78 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~-~g~--~~~l~~-~~gk~~lv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~v-~~v~is~d~~~~   78 (170)
                      +..|+++|+|++.+. +|+  .+++++ ++||++||+|| ++||++|+ .++|.|++++++|+++|+ .+++||.|    
T Consensus         3 ~~~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d----   78 (241)
T 1nm3_A            3 SMEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN----   78 (241)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS----
T ss_pred             ccCCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcC----
Confidence            568999999999996 787  899999 89999999999 99999999 999999999999999999 99999986    


Q ss_pred             CCCCChHHHHHHHHhhcCCC-CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC
Q 030881           79 EEPGSNDQIADFVCTRFKSE-FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS  155 (170)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~-~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~  155 (170)
                          +.+.+++|.+ +++.. ||++  .|..+....   .|.....++..|......|++||| ++|+|++.+.+...
T Consensus        79 ----~~~~~~~~~~-~~~~~~~~~l--~D~~~~~~~---~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~  145 (241)
T 1nm3_A           79 ----DTFVMNAWKE-DEKSENISFI--PDGNGEFTE---GMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNE  145 (241)
T ss_dssp             ----CHHHHHHHHH-HTTCTTSEEE--ECTTSHHHH---HTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSC
T ss_pred             ----CHHHHHHHHH-hcCCCceEEE--ECCCcHHHH---HhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccC
Confidence                6788899997 77886 9998  565443222   111111111111111133599999 99999999877543

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.92  E-value=1.4e-25  Score=164.09  Aligned_cols=145  Identities=17%  Similarity=0.255  Sum_probs=108.7

Q ss_pred             cccCCcccccceeeCCCCCeecC-CCC--CCcEE-EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDL-STY--KGKVL-LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l-~~~--~gk~~-lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      ++..|+++|+|++.+.+| .+++ +++  +||++ |++||++||++|..+++.|++++++|+++|+++|+||+|      
T Consensus         4 ~~~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~gv~VI~VS~D------   76 (249)
T 3a2v_A            4 IPLIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD------   76 (249)
T ss_dssp             ECCTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS------
T ss_pred             cCCCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCCcEEEEEECC------
Confidence            467899999999999999 7999 999  99975 557899999999999999999999999999999999997      


Q ss_pred             CCChHHHHHHHHh-----hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC-
Q 030881           81 PGSNDQIADFVCT-----RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT-  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~-----~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~-  154 (170)
                        +.....+|.+.     ..+++||++  .|..+..+. .|+  .. .++   .++...|++||||++|+|++...+.. 
T Consensus        77 --s~~~~~~w~~~~~~~~~~~i~fPil--~D~~~~ia~-~yg--v~-~~~---~g~~~~p~~fIID~dG~I~~~~~~~~~  145 (249)
T 3a2v_A           77 --SVFSHIKWKEWIERHIGVRIPFPII--ADPQGTVAR-RLG--LL-HAE---SATHTVRGVFIVDARGVIRTMLYYPME  145 (249)
T ss_dssp             --CHHHHHHHHHHHHHHTCCCCCSCEE--ECTTSHHHH-HHT--CC-CTT---CSSSCCEEEEEECTTSBEEEEEEECTT
T ss_pred             --CHHHHHHHHHHHHHhcCCCCceeEE--ECCchHHHH-HhC--Cc-ccc---CCCcccceEEEECCCCeEEEEEecCCc
Confidence              45555555541     147889998  565443322 121  11 010   01113459999999999999976543 


Q ss_pred             ---CchHHHHHHHHHh
Q 030881          155 ---SLLSLEHDIKKLL  167 (170)
Q Consensus       155 ---~~~~l~~~l~~~l  167 (170)
                         +.+++.+.|+++.
T Consensus       146 ~gr~~~Ellr~I~alq  161 (249)
T 3a2v_A          146 LGRLVDEILRIVKALK  161 (249)
T ss_dssp             BCCCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHH
Confidence               5667777777664

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.91  E-value=1.2e-24  Score=146.62  Aligned_cols=121  Identities=14%  Similarity=0.190  Sum_probs=95.3

Q ss_pred             cCCccccc-ceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCCCCh
Q 030881            7 QNPESIFD-LSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         7 ~~g~~~p~-f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ..++.+|+ |++.+.+|+.+++++++||++||+||++||++|+.++|.|+++++++++ .++.+++|++|.       +.
T Consensus         2 ~~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~-------~~   74 (144)
T 1i5g_A            2 GLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE-------SA   74 (144)
T ss_dssp             TTTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SH
T ss_pred             chhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCC-------CH
Confidence            35788999 9999999999999999999999999999999999999999999999985 579999999973       78


Q ss_pred             HHHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEEC-CCCcEEEEe
Q 030881           85 DQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVD-KNGQVVDRY  150 (170)
Q Consensus        85 ~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid-~~G~i~~~~  150 (170)
                      +.+++|++ +++. ++|+.. .+..    ..+..     .     +++...|+++||| ++|+|++++
T Consensus        75 ~~~~~~~~-~~~~~~~~~~~-~d~~----~~~~~-----~-----~~v~~~P~~~lid~~~G~i~~~~  126 (144)
T 1i5g_A           75 EDFKDYYA-KMPWLALPFED-RKGM----EFLTT-----G-----FDVKSIPTLVGVEADSGNIITTQ  126 (144)
T ss_dssp             HHHHHHHT-TCSSEECCTTC-HHHH----HHHHH-----H-----TTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHH-hCCccccccCc-hHHH----HHHHH-----H-----cCCCCCCEEEEEECCCCcEEecc
Confidence            88999987 5442 455441 0110    11111     0     2344455999999 999999974

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.90  E-value=6.5e-24  Score=160.88  Aligned_cols=133  Identities=11%  Similarity=0.207  Sum_probs=102.3

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      .++|+|+|.|.+|++++|++++||++||+|| +.|||+|..+++.|++    ...+++++++||.|        +.+..+
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~~~~~~~v~gis~D--------~~~~~~   69 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----ENFEKAQVVGISRD--------SVEALK   69 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----SCCTTEEEEEEESC--------CHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----HhhCCCEEEEEeCC--------CHHHHH
Confidence            4799999999999999999999999999999 5799999999988864    23357999999986        788899


Q ss_pred             HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCc---hHHHHHHHH
Q 030881           89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSL---LSLEHDIKK  165 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~---~~l~~~l~~  165 (170)
                      +|++ +++++||++  .|.++.... .|+  ....+    ..+|   ++||||++|+|++.+.+....   +++.+.|++
T Consensus        70 ~f~~-~~~l~fp~l--~D~~~~v~~-~yg--v~~~~----~~~r---~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~  136 (322)
T 4eo3_A           70 RFKE-KNDLKVTLL--SDPEGILHE-FFN--VLENG----KTVR---STFLIDRWGFVRKEWRRVKVEGHVQEVKEALDR  136 (322)
T ss_dssp             HHHH-HHTCCSEEE--ECTTCHHHH-HTT--CEETT----EECC---EEEEECTTSBEEEEEESCCSTTHHHHHHHHHHH
T ss_pred             HHHH-hhCCceEEE--EcCchHHHH-hcC--CCCCC----cCcc---EEEEECCCCEEEEEEeCCCccccHHHHHHHHhh
Confidence            9997 889999999  666554332 122  11111    2344   999999999999998775543   445555555


Q ss_pred             Hh
Q 030881          166 LL  167 (170)
Q Consensus       166 ~l  167 (170)
                      ++
T Consensus       137 ~~  138 (322)
T 4eo3_A          137 LI  138 (322)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.90  E-value=6.6e-25  Score=151.64  Aligned_cols=123  Identities=15%  Similarity=0.247  Sum_probs=95.5

Q ss_pred             ccccCCcccccc-eeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCC
Q 030881            4 QFIQNPESIFDL-SVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         4 ~~~~~g~~~p~f-~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~   81 (170)
                      .++..|+++|+| ++.+.+| .+++++++||++||+||++||++|+.++|.|+++++++++ .++.+++|++|.      
T Consensus        20 ~~~~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~------   92 (165)
T 3s9f_A           20 HMSGVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDE------   92 (165)
T ss_dssp             --CHHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCC------
T ss_pred             hhhhhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCC------
Confidence            456689999999 9999999 9999999999999999999999999999999999999987 689999999983      


Q ss_pred             CChHHHHHHHHhhcC-CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEe
Q 030881           82 GSNDQIADFVCTRFK-SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRY  150 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~  150 (170)
                       +.++++++++ +++ ..+|+..  +.   ....+..     .     +++...|++||||++ |+|+++.
T Consensus        93 -~~~~~~~~~~-~~~~~~~~~~~--~~---~~~~l~~-----~-----~~v~~~Pt~~lid~~~G~iv~~~  146 (165)
T 3s9f_A           93 -EEDDFNAYYA-KMPWLSIPFAN--RN---IVEALTK-----K-----YSVESIPTLIGLNADTGDTVTTR  146 (165)
T ss_dssp             -SHHHHHHHHT-TCSSEECCTTC--HH---HHHHHHH-----H-----TTCCSSSEEEEEETTTCCEEESC
T ss_pred             -CHHHHHHHHH-hCCCcccccCc--hh---HHHHHHH-----H-----cCCCCCCEEEEEeCCCCEEEecc
Confidence             7788999987 443 2344331  00   0011111     1     234455699999998 9999984

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.90  E-value=2.4e-24  Score=145.60  Aligned_cols=120  Identities=19%  Similarity=0.306  Sum_probs=94.4

Q ss_pred             cCCccccc-ceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCCCCh
Q 030881            7 QNPESIFD-LSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         7 ~~g~~~p~-f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ..++.+|+ |++.+.+| .+++++++||++||+||++||++|+.++|.|+++++++++ .++.+++|++|.       +.
T Consensus         3 ~~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~-------~~   74 (146)
T 1o8x_A            3 GLDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE-------EE   74 (146)
T ss_dssp             CGGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCC-------SH
T ss_pred             chHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCC-------CH
Confidence            56889999 99999999 9999999999999999999999999999999999999984 579999999973       67


Q ss_pred             HHHHHHHHhhcC-CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEEC-CCCcEEEEe
Q 030881           85 DQIADFVCTRFK-SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVD-KNGQVVDRY  150 (170)
Q Consensus        85 ~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid-~~G~i~~~~  150 (170)
                      ++++++++ +++ .++|+.. .|..    ..+..     .     +++...|++++|| ++|+|++++
T Consensus        75 ~~~~~~~~-~~~~~~~~~~~-~d~~----~~~~~-----~-----~~v~~~Pt~~lid~~~G~i~~~~  126 (146)
T 1o8x_A           75 DGFAGYFA-KMPWLAVPFAQ-SEAV----QKLSK-----H-----FNVESIPTLIGVDADSGDVVTTR  126 (146)
T ss_dssp             HHHHHHHT-TCSSEECCGGG-HHHH----HHHHH-----H-----TTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHH-HCCceeeccch-hhHH----HHHHH-----H-----hCCCCCCEEEEEECCCCeEEEec
Confidence            88999987 544 3455441 0110    11111     0     2344455999999 999999984

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.82  E-value=3.2e-25  Score=148.97  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=94.4

Q ss_pred             cccccceeeCCCCCeecCCC-CCCc-EEEEEEecCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecCCCCCCCCCChH
Q 030881           10 ESIFDLSVKDARGHEVDLST-YKGK-VLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~-~~gk-~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      +.+|+|++.+.+|+.+++++ ++|| ++||+||++||++|+.++|.|+++++++++  .++.+++|++|.       +.+
T Consensus         2 ~~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~-------~~~   74 (143)
T 2lus_A            2 EFIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDR-------SED   74 (143)
Confidence            46899999999999999999 9999 999999999999999999999999999953  479999999873       567


Q ss_pred             HHHHHHHhhcCCCCCceEEe-ecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC
Q 030881           86 QIADFVCTRFKSEFPIFEKI-DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY  151 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~  151 (170)
                      .+.+|++ +++.+|+.+... +.......   .           +++...|++++||++|+|+++..
T Consensus        75 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~~~~  126 (143)
T 2lus_A           75 DMFQYMM-ESHGDWLAIPYRSGPASNVTA---K-----------YGITGIPALVIVKKDGTLISMNG  126 (143)
Confidence            8888887 778887765311 11111111   1           22334459999999999999853

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.89  E-value=5.1e-24  Score=143.43  Aligned_cols=121  Identities=16%  Similarity=0.234  Sum_probs=93.3

Q ss_pred             ccCCcccccc-eeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCC
Q 030881            6 IQNPESIFDL-SVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         6 ~~~g~~~p~f-~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~   83 (170)
                      ...|+.+|+| ++.+.+| .+++++++||++||+||++||++|+.+.|.|++++++++ +.++.+++|++|.       +
T Consensus         2 ~~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~-------~   73 (144)
T 1o73_A            2 SGLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE-------N   73 (144)
T ss_dssp             CGGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------S
T ss_pred             cchhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCC-------C
Confidence            4578999997 9999999 999999999999999999999999999999999999998 3579999999973       6


Q ss_pred             hHHHHHHHHhhcC-CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEEC-CCCcEEEEe
Q 030881           84 NDQIADFVCTRFK-SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVD-KNGQVVDRY  150 (170)
Q Consensus        84 ~~~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid-~~G~i~~~~  150 (170)
                      .++++++++ +++ ..+|+.. .+.    ...+...          +++...|++++|| ++|+|+++.
T Consensus        74 ~~~~~~~~~-~~~~~~~~~~~-~~~----~~~~~~~----------~~v~~~Pt~~lid~~~G~i~~~~  126 (144)
T 1o73_A           74 ESDFHDYYG-KMPWLALPFDQ-RST----VSELGKT----------FGVESIPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHHHHHT-TCSSEECCTTC-HHH----HHHHHHH----------HTCCSSSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHHH-hCCceEeeccc-hhH----HHHHHHH----------cCCCCCCEEEEEECCCCeEEecc
Confidence            778888886 443 2344330 010    0111110          1233445999999 899999974

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.87  E-value=2.2e-22  Score=139.48  Aligned_cols=134  Identities=11%  Similarity=0.094  Sum_probs=100.8

Q ss_pred             cccCCcccccceeeCCCC----------CeecCCCC-CCcEE-EEEEecCCCCCChh-hHHHHHHHHHHhccCCc-EEEE
Q 030881            5 FIQNPESIFDLSVKDARG----------HEVDLSTY-KGKVL-LIVNVASKCGMTNS-NYIELSQLYDKYKDQGL-EILA   70 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g----------~~~~l~~~-~gk~~-lv~f~~~~C~~C~~-~~~~l~~~~~~~~~~~v-~~v~   70 (170)
                      +++.|+++|++++....+          ++++|+++ +||++ |++||++|||+|.. +++.|++.+++|+++|+ ++++
T Consensus         9 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g~d~Vig   88 (176)
T 4f82_A            9 MIQVGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAGIDEIWC   88 (176)
T ss_dssp             CCCTTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhhcCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            578999999999876533          67899997 99865 55667999999999 99999999999999999 9999


Q ss_pred             eecCCCCCCCCCChHHHHHHHHhhcCCC--CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEE
Q 030881           71 FPCNQFGEEEPGSNDQIADFVCTRFKSE--FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD  148 (170)
Q Consensus        71 is~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~  148 (170)
                      ||.|        +....++|.+ +.++.  ||++  .|.++.... .|+.....  ...|.++...+++||| ++|+|++
T Consensus        89 IS~D--------~~~~~~~f~~-~~~l~~~f~lL--sD~~~~va~-ayGv~~~~--~~~G~g~~s~R~tfII-~dG~I~~  153 (176)
T 4f82_A           89 VSVN--------DAFVMGAWGR-DLHTAGKVRMM--ADGSAAFTH-ALGLTQDL--SARGMGIRSLRYAMVI-DGGVVKT  153 (176)
T ss_dssp             EESS--------CHHHHHHHHH-HTTCTTTSEEE--ECTTCHHHH-HHTCEEEC--GGGTCCEEECCEEEEE-ETTEEEE
T ss_pred             EeCC--------CHHHHHHHHH-HhCCCCCceEE--EcCchHHHH-HhCCCccc--cccCCCcccccEEEEE-cCCEEEE
Confidence            9987        6888999997 67887  9999  665543322 22221110  0111123234589999 9999999


Q ss_pred             EeCCC
Q 030881          149 RYYPT  153 (170)
Q Consensus       149 ~~~~~  153 (170)
                      .+.+.
T Consensus       154 ~~~~~  158 (176)
T 4f82_A          154 LAVEA  158 (176)
T ss_dssp             EEECC
T ss_pred             EEEcC
Confidence            97654

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.85  E-value=8.3e-21  Score=131.31  Aligned_cols=134  Identities=16%  Similarity=0.216  Sum_probs=100.6

Q ss_pred             cccCCcccccceeeCCCC-CeecCCC-CCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcE-EEEeecCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARG-HEVDLST-YKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLE-ILAFPCNQFGEEE   80 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g-~~~~l~~-~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~-~v~is~d~~~~~~   80 (170)
                      .+..|+++|+|+|.+..+ +.++|++ ++||++||+|+ +.|||.|..+++.+++.+++|+++|+. +++||.|      
T Consensus        13 ~~~vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~gv~~VigIS~D------   86 (171)
T 2xhf_A           13 PIKVGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEGYHTIACIAVN------   86 (171)
T ss_dssp             CCCTTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTTCCEEEEEESS------
T ss_pred             cccCcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCCEEEEEeCC------
Confidence            467999999999994332 8999999 49999999998 689999999999999999999999996 9999987      


Q ss_pred             CCChHHHHHHHHhhcCC--CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           81 PGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                        +....++|.+ +.+.  +||++  .|.++.... .|+......  ..|.+......+|||| +|+|++.+...
T Consensus        87 --~~~~~~~w~~-~~~~~~~f~lL--SD~~~~~a~-ayGv~~~~~--~~g~g~~~~R~tfvId-dG~V~~~~v~~  152 (171)
T 2xhf_A           87 --DPFVMAAWGK-TVDPEHKIRML--ADMHGEFTR-ALGTELDSS--KMLGNNRSRRYAMLID-DNKIRSVSTEP  152 (171)
T ss_dssp             --CHHHHHHHHH-HHCTTCCSEEE--ECTTSHHHH-HHTCBCCCH--HHHSSCCBCCEEEEEE-TTEEEEEEETT
T ss_pred             --CHHHHHHHHH-hcCCCCCeEEE--EeCCchHHH-HhCCceecc--ccCCCcceEEEEEEEe-CCEEEEEEEeC
Confidence              7889999987 6677  89999  565544332 222211100  0000111122789998 99999997654

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.84  E-value=3.3e-21  Score=134.74  Aligned_cols=131  Identities=13%  Similarity=0.165  Sum_probs=97.7

Q ss_pred             cCCcccccceeeC--C---------CC----CeecCCC-CCCcEEEEEEe-cCCCCCCh-hhHHHHHHHHHHh-ccCCcE
Q 030881            7 QNPESIFDLSVKD--A---------RG----HEVDLST-YKGKVLLIVNV-ASKCGMTN-SNYIELSQLYDKY-KDQGLE   67 (170)
Q Consensus         7 ~~g~~~p~f~l~~--~---------~g----~~~~l~~-~~gk~~lv~f~-~~~C~~C~-~~~~~l~~~~~~~-~~~~v~   67 (170)
                      ..|+++|+|+|.+  .         +|    +.+++++ ++||++||+|+ +.|||.|. .+++.+++.+++| +++|+.
T Consensus         2 ~vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g~~   81 (182)
T 1xiy_A            2 KENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD   81 (182)
T ss_dssp             CTTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS
T ss_pred             CCCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence            5799999999998  4         67    7899999 69999988888 68999999 9999999999999 999995


Q ss_pred             -EEEeecCCCCCCCCCChHHHHHHHHhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCc
Q 030881           68 -ILAFPCNQFGEEEPGSNDQIADFVCTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ  145 (170)
Q Consensus        68 -~v~is~d~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~  145 (170)
                       +++||.|        +....++|.+ ..+. +||++  .|.++.... .|+.....  ...|.+......+|||| +|+
T Consensus        82 ~V~gvS~D--------~~~~~~~~~~-~~~~~~f~lL--sD~~~~~a~-~yGv~~~~--~~~G~g~~~~R~tfvId-dG~  146 (182)
T 1xiy_A           82 DIYCITNN--------DIYVLKSWFK-SMDIKKIKYI--SDGNSSFTD-SMNMLVDK--SNFFMGMRPWRFVAIVE-NNI  146 (182)
T ss_dssp             EEEEEESS--------CHHHHHHHHH-HTTCCSSEEE--ECTTSHHHH-HTTCEEEC--GGGTCCEEECCEEEEEE-TTE
T ss_pred             EEEEEeCC--------CHHHHHHHHH-HcCCCCceEE--EeCchHHHH-HhCCceec--cccCCCCceEEEEEEEc-CCE
Confidence             9999987        7888899987 6678 69999  565544322 22221110  00111111233789998 999


Q ss_pred             EEEEeCC
Q 030881          146 VVDRYYP  152 (170)
Q Consensus       146 i~~~~~~  152 (170)
                      |++.+..
T Consensus       147 V~~~~v~  153 (182)
T 1xiy_A          147 LVKMFQE  153 (182)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9999643

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.79  E-value=1.2e-18  Score=114.58  Aligned_cols=113  Identities=14%  Similarity=0.065  Sum_probs=88.4

Q ss_pred             cccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee--cCCCCCCCCCChHHH
Q 030881           10 ESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP--CNQFGEEEPGSNDQI   87 (170)
Q Consensus        10 ~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is--~d~~~~~~~~~~~~~   87 (170)
                      ..+++++..+.+|........+||++||+||++||++|+.+.|.++++.++++ .++.++.|+  .|           .-
T Consensus         4 ~~~~~l~~~~~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~-~~v~~~~v~~~~d-----------~~   71 (126)
T 2l57_A            4 EGIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE-GKFNIYYARLEEE-----------KN   71 (126)
T ss_dssp             CCSSCTTTTCCSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS-SSCEEEEEETTSS-----------HH
T ss_pred             cccCCCCccccchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc-CCeEEEEEeCCCC-----------ch
Confidence            45667777777776665666789999999999999999999999999999997 459999998  43           11


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      .+..+ +++                                  +...|++++++++|+++.++.|..+.+++.+.|++++
T Consensus        72 ~~~~~-~~~----------------------------------v~~~Pt~~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~  116 (126)
T 2l57_A           72 IDLAY-KYD----------------------------------ANIVPTTVFLDKEGNKFYVHQGLMRKNNIETILNSLG  116 (126)
T ss_dssp             HHHHH-HTT----------------------------------CCSSSEEEEECTTCCEEEEEESCCCHHHHHHHHHHHC
T ss_pred             HHHHH-HcC----------------------------------CcceeEEEEECCCCCEEEEecCCCCHHHHHHHHHHHh
Confidence            22222 322                                  2223399999999999999999889999999999887


Q ss_pred             cC
Q 030881          168 GL  169 (170)
Q Consensus       168 ~~  169 (170)
                      ..
T Consensus       117 ~~  118 (126)
T 2l57_A          117 VK  118 (126)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.77  E-value=9.7e-20  Score=121.40  Aligned_cols=117  Identities=12%  Similarity=0.093  Sum_probs=87.2

Q ss_pred             ccCCcccccce-eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            6 IQNPESIFDLS-VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         6 ~~~g~~~p~f~-l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      ...+..+|+|. +.+.++....+++.+||++||+||++||++|+.+.+.+   .++.+.++  ++.++.|+++.      
T Consensus         4 ~~~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~~~~~~vd~~~------   75 (134)
T 2fwh_A            4 TAQTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--DTVLLQANVTA------   75 (134)
T ss_dssp             ------CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--TSEEEEEECTT------
T ss_pred             ccccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--CcEEEEEeCCC------
Confidence            46778899998 66667767778888899999999999999999999999   88998886  49999999862      


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE--EEeCCCCCchHH
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV--DRYYPTTSLLSL  159 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~--~~~~~~~~~~~l  159 (170)
                       ..+...+.++ +++                                  +...|+++++|++|+++  .++.|..+.+++
T Consensus        76 -~~~~~~~l~~-~~~----------------------------------v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l  119 (134)
T 2fwh_A           76 -NDAQDVALLK-HLN----------------------------------VLGLPTILFFDGQGQEHPQARVTGFMDAETF  119 (134)
T ss_dssp             -CCHHHHHHHH-HTT----------------------------------CCSSSEEEEECTTSCBCGGGCBCSCCCHHHH
T ss_pred             -CcchHHHHHH-HcC----------------------------------CCCCCEEEEECCCCCEeeeeeeeeccCHHHH
Confidence             2233334433 322                                  22233999999999998  678898899999


Q ss_pred             HHHHHHH
Q 030881          160 EHDIKKL  166 (170)
Q Consensus       160 ~~~l~~~  166 (170)
                      .+.|+++
T Consensus       120 ~~~l~~~  126 (134)
T 2fwh_A          120 SAHLRDR  126 (134)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9888765

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.76  E-value=3.9e-18  Score=114.21  Aligned_cols=105  Identities=19%  Similarity=0.171  Sum_probs=84.7

Q ss_pred             eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      +.+.+|...+++.++|+++||+||++||++|+...|.+.++.++++++ +.++.|+++.       ..    +.++ +++
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~  102 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK-IYIYKVNVDK-------EP----ELAR-DFG  102 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHHH-HTT
T ss_pred             hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc-eEEEEEECCC-------CH----HHHH-HcC
Confidence            456678888899899999999999999999999999999999999864 9999998862       21    2222 322


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                        |...|++++++++|+++ .+.|..+.+++.+.|+++|++
T Consensus       103 ----------------------------------v~~~Pt~~~~~~~g~~~-~~~G~~~~~~l~~~l~~~l~k  140 (141)
T 3hxs_A          103 ----------------------------------IQSIPTIWFVPMKGEPQ-VNMGALSKEQLKGYIDKVLLK  140 (141)
T ss_dssp             ----------------------------------CCSSSEEEEECSSSCCE-EEESCCCHHHHHHHHHHTTC-
T ss_pred             ----------------------------------CCCcCEEEEEeCCCCEE-EEeCCCCHHHHHHHHHHHHcc
Confidence                                              22234999999999988 677888999999999999875

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.74  E-value=2.3e-18  Score=117.43  Aligned_cols=124  Identities=12%  Similarity=0.043  Sum_probs=84.6

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+...++|   +..|..+++++.+||++||+|| ++||++|+.+.|.+   .++.+.+. .++.++.|+.+..      
T Consensus        25 ~~~~~~~~~---~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~-~~~~~v~vd~~~~------   94 (154)
T 2ju5_A           25 PIAAANLQW---ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG-VHLHMVEVDFPQK------   94 (154)
T ss_dssp             SSCCCCCCE---ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH-HHCEEEEEECCSS------
T ss_pred             hcccCCCCC---CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc-CcEEEEEecCccc------
Confidence            344444555   3346667777788999999999 99999999999999   77766553 3499999987631      


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--CchHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--SLLSLE  160 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--~~~~l~  160 (170)
                       .           ++.+++.   +..    ..+..     .     +++...|+++++|++|+++.+. |..  +.+++.
T Consensus        95 -~-----------~~~~~~~---~~~----~~l~~-----~-----~~v~~~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~  144 (154)
T 2ju5_A           95 -N-----------HQPEEQR---QKN----QELKA-----Q-----YKVTGFPELVFIDAEGKQLARM-GFEPGGGAAYV  144 (154)
T ss_dssp             -C-----------CCCHHHH---HHH----HHHHH-----H-----TTCCSSSEEEEECTTCCEEEEE-CCCTTCHHHHH
T ss_pred             -c-----------CCChhhH---hhH----HHHHH-----H-----cCCCCCCEEEEEcCCCCEEEEe-cCCCCCHHHHH
Confidence             1           0111100   000    00000     0     2333445999999999999999 887  788899


Q ss_pred             HHHHHHhcCC
Q 030881          161 HDIKKLLGLS  170 (170)
Q Consensus       161 ~~l~~~l~~~  170 (170)
                      +.|+++++.+
T Consensus       145 ~~l~~~l~~k  154 (154)
T 2ju5_A          145 SKVKSALKLR  154 (154)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHHhcC
Confidence            9999998753

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.72  E-value=2.9e-17  Score=108.41  Aligned_cols=108  Identities=18%  Similarity=0.188  Sum_probs=79.8

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      ...++|+++  +.++..++....+||++||+||++||++|+.+.|.++++.+++++ ++.++.|+++.       . .  
T Consensus        20 ~~~~~~~~~--~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~-~v~~~~vd~d~-------~-~--   86 (128)
T 3ul3_B           20 MFKKVPRLQ--QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGK-RIYLLKVDLDK-------N-E--   86 (128)
T ss_dssp             ------CCC--CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG-GEEEEEEEGGG-------C-H--
T ss_pred             HhccCCccc--cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CeEEEEEECCC-------C-H--
Confidence            445666666  556666777778999999999999999999999999999999975 49999998862       1 1  


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                       +.++ +++                                  +...|+++++ ++|+++.++.|..+.+++.+.|++
T Consensus        87 -~l~~-~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~  127 (128)
T 3ul3_B           87 -SLAR-KFS----------------------------------VKSLPTIILL-KNKTMLARKDHFVSSNDLIALIKK  127 (128)
T ss_dssp             -HHHH-HTT----------------------------------CCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHTT
T ss_pred             -HHHH-HcC----------------------------------CCCcCEEEEE-ECCEEEEEecCCCCHHHHHHHHHh
Confidence             2222 322                                  2223388888 799999999998888888887764

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.68  E-value=1.7e-16  Score=107.18  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=89.1

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHH
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQ   86 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~   86 (170)
                      ..+.++++..+.+.++..+......++++||+||++||++|+.+.|.++++.+++.++ +.++.|+.+.       ..  
T Consensus        30 ~~~~~~~~~~v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~-~~~~~vd~~~-------~~--   99 (148)
T 3p2a_A           30 RCGHSLFDGEVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK-VRFVKVNTEA-------EP--   99 (148)
T ss_dssp             TTCCBTTCCCCEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH--
T ss_pred             hcCCccccCCceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc-eEEEEEECcC-------CH--
Confidence            3456677777888877766544467899999999999999999999999999999765 9999998862       22  


Q ss_pred             HHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881           87 IADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        87 ~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                        +..+ +++                                  |...|+++++ ++|+++.++.|..+.+++.+.|+++
T Consensus       100 --~l~~-~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~  141 (148)
T 3p2a_A          100 --ALST-RFR----------------------------------IRSIPTIMLY-RNGKMIDMLNGAVPKAPFDNWLDEQ  141 (148)
T ss_dssp             --HHHH-HTT----------------------------------CCSSSEEEEE-ETTEEEEEESSCCCHHHHHHHHHHH
T ss_pred             --HHHH-HCC----------------------------------CCccCEEEEE-ECCeEEEEEeCCCCHHHHHHHHHHH
Confidence              2222 322                                  2222387777 6999999999999999999999998


Q ss_pred             hcC
Q 030881          167 LGL  169 (170)
Q Consensus       167 l~~  169 (170)
                      ++.
T Consensus       142 l~~  144 (148)
T 3p2a_A          142 LSR  144 (148)
T ss_dssp             HHS
T ss_pred             hcc
Confidence            854

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.64  E-value=4.6e-16  Score=103.08  Aligned_cols=97  Identities=14%  Similarity=0.046  Sum_probs=72.2

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHH--HHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELS--QLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~--~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      ..||++||+||++||++|+.+.|.|.  ++.+++++ ++.++.|+++.        .+...+..+ ++++.++       
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~-~~~~~~vd~~~--------~~~~~~l~~-~~~v~~~-------   89 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAK-HFEVVKIDVGN--------FDRNLELSQ-AYGDPIQ-------   89 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHH-HCEEEEEECTT--------TTSSHHHHH-HTTCGGG-------
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcC-CEEEEEEeCCc--------ccchHHHHH-HhCCccC-------
Confidence            46999999999999999999999999  99998865 39999998842        011122232 4333110       


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC-------CCCchHHHHHHHHHh
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP-------TTSLLSLEHDIKKLL  167 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~-------~~~~~~l~~~l~~~l  167 (170)
                                              ...|+++++|++|+++..+.|       ..+.+++.+.|+++.
T Consensus        90 ------------------------~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           90 ------------------------DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             ------------------------GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             ------------------------CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence                                    122399999999999999888       567778888888764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.63  E-value=1e-15  Score=99.31  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=69.7

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+|+++||+||++||++|+...|.+.++.+++++  +.++.|++|.       . .   +.++ +++             
T Consensus        29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~vd~d~-------~-~---~l~~-~~~-------------   81 (116)
T 3qfa_C           29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN--VIFLEVDVDD-------C-Q---DVAS-ECE-------------   81 (116)
T ss_dssp             HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT--SEEEEEETTT-------T-H---HHHH-HTT-------------
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-------C-H---HHHH-HcC-------------
Confidence            3789999999999999999999999999999866  9999998862       1 1   2222 322             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                           +...|+++++ ++|+++..+.|. +.+++.+.|+++|
T Consensus        82 ---------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l  116 (116)
T 3qfa_C           82 ---------------------VKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  116 (116)
T ss_dssp             ---------------------CCSSSEEEEE-SSSSEEEEEESC-CHHHHHHHHHHHC
T ss_pred             ---------------------CccccEEEEE-eCCeEEEEEcCC-CHHHHHHHHHHhC
Confidence                                 2222387777 899999999998 8889999998875

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.63  E-value=8.1e-16  Score=98.27  Aligned_cols=88  Identities=20%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .+..+|++||+|||+||++|+...|.+.++.+.+.+  +.++.|++|.       .+    +.++ +++           
T Consensus        16 ~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~-------~~----~l~~-~~~-----------   70 (105)
T 3zzx_A           16 NEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD--VVFLKVDVDE-------CE----DIAQ-DNQ-----------   70 (105)
T ss_dssp             HHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEETTT-------CH----HHHH-HTT-----------
T ss_pred             HhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC--eEEEEEeccc-------CH----HHHH-HcC-----------
Confidence            344689999999999999999999999999999864  8899998762       22    2222 322           


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                                             |...||++++ ++|+++.++.|. +++++.+.|++
T Consensus        71 -----------------------V~~~PT~~~~-~~G~~v~~~~G~-~~~~l~~~i~k  103 (105)
T 3zzx_A           71 -----------------------IACMPTFLFM-KNGQKLDSLSGA-NYDKLLELVEK  103 (105)
T ss_dssp             -----------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHH
T ss_pred             -----------------------CCeecEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence                                   2222375555 799999999884 77778877765

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=5.7e-16  Score=102.16  Aligned_cols=101  Identities=13%  Similarity=0.166  Sum_probs=74.8

Q ss_pred             eecCCCCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881           24 EVDLSTYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP  100 (170)
Q Consensus        24 ~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p  100 (170)
                      .+.+++.+||++||+||++||++|+.+.+.+   ..+.+.+.. ++.++.|+.+.         +...+.++ +++    
T Consensus        19 ~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------~~~~~~~~-~~~----   83 (130)
T 2kuc_A           19 ALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNR-HFVNLKMDMEK---------GEGVELRK-KYG----   83 (130)
T ss_dssp             HHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHH-HSEEEEECSSS---------TTHHHHHH-HTT----
T ss_pred             HHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhc-CeEEEEEecCC---------cchHHHHH-HcC----
Confidence            3455556799999999999999999999998   666665543 48888887651         11122222 322    


Q ss_pred             ceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          101 IFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       101 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                    +...|+++++|++|+++.++.|..+.+++.+.|++++..
T Consensus        84 ------------------------------v~~~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~  122 (130)
T 2kuc_A           84 ------------------------------VHAYPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVES  122 (130)
T ss_dssp             ------------------------------CCSSCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSC
T ss_pred             ------------------------------CCCCCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHh
Confidence                                          222349999999999999999988999999999998864

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.62  E-value=1.9e-16  Score=109.56  Aligned_cols=118  Identities=9%  Similarity=0.085  Sum_probs=69.5

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      .+||++||+||++||++|+.+.+.+   .++.+.+++ ++.++.|++|.       .. ++..............+  ..
T Consensus        45 ~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~-~~~~v~v~~d~-------~~-~~~~~~~~~~~~~~~~~--~~  113 (172)
T 3f9u_A           45 QHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINN-DYVLITLYVDN-------KT-PLTEPVKIMENGTERTL--RT  113 (172)
T ss_dssp             HTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHH-HCEEEEEETTC-------CC-EEEEEEEEEETTEEEEE--EE
T ss_pred             HcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcC-CEEEEEEecCc-------cc-ccchhhhhhhcchhhhh--hh
Confidence            4699999999999999999974443   455555543 59999999873       11 00000000000000000  00


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCC-chHHHHHHHHHhc
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTS-LLSLEHDIKKLLG  168 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~-~~~l~~~l~~~l~  168 (170)
                      .     ...+.......     +++...|+++++|++|+++.++.|..+ .+++.+.|+++++
T Consensus       114 ~-----~~~~~~~~~~~-----~~v~~~Pt~~lid~~G~~~~~~~G~~~~~~~l~~~l~~~l~  166 (172)
T 3f9u_A          114 V-----GDKWSYLQRVK-----FGANAQPFYVLIDNEGNPLNKSYAYDEDISKYINFLQTGLE  166 (172)
T ss_dssp             H-----HHHHHHHHHHH-----HSCCCSSEEEEECTTSCBSSCCBCSCCCHHHHHHHHHHHHH
T ss_pred             h-----hhhhhHHHHHH-----cCCCCcceEEEECCCCCEEeeccCCCCCHHHHHHHHHHHHH
Confidence            0     00000000000     233344599999999999999999888 8889999988875

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.62  E-value=3.7e-15  Score=95.95  Aligned_cols=91  Identities=19%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|+++||+||++||++|....|.++++.+++++ ++.++.|+++.       ..    +.++ ++               
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~-~v~~~~vd~~~-------~~----~l~~-~~---------------   67 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGD-KLKIVKIDVDE-------NQ----ETAG-KY---------------   67 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTT-TCEEEEEETTT-------CC----SHHH-HT---------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEECCC-------CH----HHHH-Hc---------------
Confidence            789999999999999999999999999999976 49999999863       11    1111 21               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                         ++...|+++++ ++|+++.++.|..+.+++.+.|++.+..
T Consensus        68 -------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~~~~  106 (112)
T 2voc_A           68 -------------------GVMSIPTLLVL-KDGEVVETSVGFKPKEALQELVNKHLLE  106 (112)
T ss_dssp             -------------------TCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTSCS
T ss_pred             -------------------CCCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence                               22223388999 8999999999999999999999988753

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.61  E-value=1e-15  Score=97.53  Aligned_cols=90  Identities=18%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ++++++|+||++||++|....|.++++.+++++. +.++.|+.+.       ..    +.++ +++              
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~--------------   72 (109)
T 3tco_A           20 NNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK-AVFGRLNVDE-------NQ----KIAD-KYS--------------   72 (109)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             cCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC-ceEEEEcccc-------CH----HHHH-hcC--------------
Confidence            5899999999999999999999999999999764 9999998762       22    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|+++++
T Consensus        73 --------------------i~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  109 (109)
T 3tco_A           73 --------------------VLNIPTTLIF-VNGQLVDSLVGAVDEDTLESTVNKYLK  109 (109)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHC-
T ss_pred             --------------------cccCCEEEEE-cCCcEEEeeeccCCHHHHHHHHHHHhC
Confidence                                2222388888 899999999998899999999998874

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.61  E-value=3.9e-16  Score=101.84  Aligned_cols=116  Identities=16%  Similarity=0.138  Sum_probs=78.1

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCC--CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTY--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~--~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      ..+..+...+.+.+.+.++-.-.+.+.  .++++||+||++||++|+...|.++++.+++++  +.++.|+.+.      
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~vd~~~------   75 (122)
T 2vlu_A            4 SATAAAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN--AVFLKVDVDE------   75 (122)
T ss_dssp             --------CCCEEECSHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT------
T ss_pred             cccccCCCCcceeccCHHHHHHHHHHhhccCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--cEEEEEECCC------
Confidence            345566666666665544322223332  589999999999999999999999999999875  9999998862      


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                       ..    +.++ +++                                  +...|+++++ ++|+++.++.|.. .+++.+
T Consensus        76 -~~----~~~~-~~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~  113 (122)
T 2vlu_A           76 -LK----PIAE-QFS----------------------------------VEAMPTFLFM-KEGDVKDRVVGAI-KEELTA  113 (122)
T ss_dssp             -CH----HHHH-HTT----------------------------------CCSSSEEEEE-ETTEEEEEEESSC-HHHHHH
T ss_pred             -CH----HHHH-HcC----------------------------------CCcccEEEEE-eCCEEEEEEeCcC-HHHHHH
Confidence             11    2222 322                                  2222375555 8999999998887 888999


Q ss_pred             HHHHHhcC
Q 030881          162 DIKKLLGL  169 (170)
Q Consensus       162 ~l~~~l~~  169 (170)
                      .|+++++.
T Consensus       114 ~l~~~l~~  121 (122)
T 2vlu_A          114 KVGLHAAA  121 (122)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHhcc
Confidence            99988763

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.61  E-value=3.5e-15  Score=99.36  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=72.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.+.++.+++++. +.++.|+++.       . .   +.++ +++              
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~-~---~l~~-~~~--------------   89 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ-IVIYKVDTEK-------E-Q---ELAG-AFG--------------   89 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------C-H---HHHH-HTT--------------
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-EEEEEEeCCC-------C-H---HHHH-HcC--------------
Confidence            4699999999999999999999999999999754 9999998862       1 1   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|+++++|++|+++ .+.|..+.+++.+.|++++..
T Consensus        90 --------------------v~~~Pt~~~~~~~G~~~-~~~G~~~~~~l~~~l~~~~~~  127 (136)
T 2l5l_A           90 --------------------IRSIPSILFIPMEGKPE-MAQGAMPKASFKKAIDEFLLK  127 (136)
T ss_dssp             --------------------CCSSCEEEEECSSSCCE-EEESCCCHHHHHHHHHHHHTS
T ss_pred             --------------------CCCCCEEEEECCCCcEE-EEeCCCCHHHHHHHHHHHhhc
Confidence                                22233999999999998 577888999999999988753

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.61  E-value=3.3e-16  Score=104.15  Aligned_cols=103  Identities=12%  Similarity=0.043  Sum_probs=72.7

Q ss_pred             eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      +.+.++-.-.+++.+||++||+||++||++|+.+.|.++++.+++   ++.++.|+.+.       . .   +.++ +++
T Consensus        25 l~~~~~~~~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~---~v~~~~vd~~~-------~-~---~l~~-~~~   89 (133)
T 3cxg_A           25 LKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY---YVTLVDIDVDI-------H-P---KLND-QHN   89 (133)
T ss_dssp             CCCTTHHHHHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE---ECEEEEEETTT-------C-H---HHHH-HTT
T ss_pred             ecChhHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc---CEEEEEEeccc-------h-H---HHHH-hcC
Confidence            333343333456667999999999999999999999999988776   48899998752       1 1   1221 222


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEE-CCCCc--EEEEeCCCCCchHHHHHHHHHhcC
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLV-DKNGQ--VVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~li-d~~G~--i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                        +...|+++++ +++|+  ++.++.|. +.+++.+.|++++.+
T Consensus        90 ----------------------------------v~~~Pt~~~~~~~~g~g~~~~~~~G~-~~~~l~~~l~~~l~~  130 (133)
T 3cxg_A           90 ----------------------------------IKALPTFEFYFNLNNEWVLVHTVEGA-NQNDIEKAFQKYCLE  130 (133)
T ss_dssp             ----------------------------------CCSSSEEEEEEEETTEEEEEEEEESC-CHHHHHHHHHHHSEE
T ss_pred             ----------------------------------CCCCCEEEEEEecCCCeEEEEEEcCC-CHHHHHHHHHHHHHh
Confidence                                              2223388888 44555  89888887 788899999998753

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=1.9e-14  Score=94.75  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=71.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.+.++.+++++. +.++.|+++.       . .   +.++ +++              
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~-------~-~---~l~~-~~~--------------   86 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV-VKVGAVNADK-------H-Q---SLGG-QYG--------------   86 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT-SEEEEEETTT-------C-H---HHHH-HHT--------------
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc-eEEEEEeCCC-------C-H---HHHH-HcC--------------
Confidence            4789999999999999999999999999999765 9999998762       1 1   2222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|++++++++|+++..+.|..+.+++.+.|.+.++
T Consensus        87 --------------------v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~l~  124 (130)
T 2dml_A           87 --------------------VQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALR  124 (130)
T ss_dssp             --------------------CCSSSEEEEESSCTTSCEECCSCCSHHHHHHHHHHHHH
T ss_pred             --------------------CCccCEEEEEeCCCCeEEEeecCCCHHHHHHHHHHHHh
Confidence                                22223999999999877888888888899999988774

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.60  E-value=7.1e-15  Score=93.64  Aligned_cols=90  Identities=20%  Similarity=0.201  Sum_probs=71.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.++++.++++++ +.++.|+++.       ..    +.++ ++               
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~---------------   70 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTAP-KY---------------   70 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CT----THHH-HT---------------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC-cEEEEEECCC-------CH----HHHH-Hc---------------
Confidence            5799999999999999999999999999999764 9999998862       11    1111 21               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         ++...|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        71 -------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  108 (108)
T 2trx_A           71 -------------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             -------------------TCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -------------------CCcccCEEEEE-eCCEEEEEEecCCCHHHHHHHHHHhhC
Confidence                               22223488888 899999999998899999999998764

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.60  E-value=3.1e-15  Score=95.92  Aligned_cols=87  Identities=13%  Similarity=0.197  Sum_probs=68.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +||++||+||++||++|+...|.++++.+++++  +.++.|+.+.       . .   +.++ +++              
T Consensus        23 ~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vd~~~-------~-~---~l~~-~~~--------------   74 (109)
T 3f3q_A           23 QDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ--ADFYKLDVDE-------L-G---DVAQ-KNE--------------   74 (109)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------C-H---HHHH-HTT--------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC--CEEEEEECCC-------C-H---HHHH-HcC--------------
Confidence            689999999999999999999999999999965  9999998762       1 1   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          +...|++++++ +|+++.++.|. .++++.+.|++++
T Consensus        75 --------------------v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l  109 (109)
T 3f3q_A           75 --------------------VSAMPTLLLFK-NGKEVAKVVGA-NPAAIKQAIAANA  109 (109)
T ss_dssp             --------------------CCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             --------------------CCccCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHhhC
Confidence                                22233888887 89999998887 6788998888764

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.60  E-value=8.7e-16  Score=97.45  Aligned_cols=90  Identities=17%  Similarity=0.181  Sum_probs=71.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|++++|+||++||++|+...|.++++.+++++. +.++.|+++.       ..    +.++ +++              
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------~~----~~~~-~~~--------------   68 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE-------NP----ETTS-QFG--------------   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT-CEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-cEEEEEECcC-------CH----HHHH-HcC--------------
Confidence            5799999999999999999999999999999765 9999998862       21    1221 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|+++++
T Consensus        69 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  105 (105)
T 1nsw_A           69 --------------------IMSIPTLILF-KGGRPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTTC
T ss_pred             --------------------CccccEEEEE-eCCeEEEEEecCCCHHHHHHHHHHHhC
Confidence                                2223388888 899999999998888889888887763

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.59  E-value=9.3e-15  Score=94.00  Aligned_cols=104  Identities=19%  Similarity=0.140  Sum_probs=78.0

Q ss_pred             eCCCCCeecCC-CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           18 KDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        18 ~~~~g~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      .+.++..+... .-.++++||+||++||++|....|.++++.++++++ +.++.|+++.       ..    +.++ +++
T Consensus        10 ~~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-v~~~~v~~~~-------~~----~~~~-~~~   76 (115)
T 1thx_A           10 ITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------NP----TTVK-KYK   76 (115)
T ss_dssp             EECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------CH----HHHH-HTT
T ss_pred             EEeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc-EEEEEEEcCC-------CH----HHHH-HcC
Confidence            34444444322 236899999999999999999999999999999765 9999999862       21    1222 222


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                        +...|+++++ ++|+++..+.|..+.+++.+.|++++..
T Consensus        77 ----------------------------------v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l~~  114 (115)
T 1thx_A           77 ----------------------------------VEGVPALRLV-KGEQILDSTEGVISKDKLLSFLDTHLNN  114 (115)
T ss_dssp             ----------------------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             ----------------------------------CCceeEEEEE-cCCEEEEEecCCCCHHHHHHHHHHHhcC
Confidence                                              2223488888 8999999999988899999999998753

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.59  E-value=6.9e-15  Score=109.41  Aligned_cols=90  Identities=16%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+|+++||+||++||++|+...|.+.++.++++++ +.++.|+++.       .+    +..+ +++             
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~~~-------~~----~~~~-~~~-------------   77 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ-FILAKLDCDA-------EQ----MIAA-QFG-------------   77 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS-SEEEEEETTT-------CH----HHHH-TTT-------------
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEEeCcc-------CH----HHHH-HcC-------------
Confidence            35899999999999999999999999999999864 9999999862       21    2222 322             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                           |...||++++ ++|+++.++.|..+.+.+.+.|...+
T Consensus        78 ---------------------v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~l  113 (287)
T 3qou_A           78 ---------------------LRAIPTVYLF-QNGQPVDGFQGPQPEEAIRALLDXVL  113 (287)
T ss_dssp             ---------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHS
T ss_pred             ---------------------CCCCCeEEEE-ECCEEEEEeeCCCCHHHHHHHHHHHc
Confidence                                 2223388888 78999999999888888888887765

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.58  E-value=1.2e-15  Score=103.96  Aligned_cols=91  Identities=18%  Similarity=0.118  Sum_probs=72.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.++++.+++.++ +.++.|+++.       ..    +... +++              
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~vd~~~-------~~----~l~~-~~~--------------  115 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ-VRLAKIDTQA-------HP----AVAG-RHR--------------  115 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT-------ST----HHHH-HTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC-EEEEEEeCCc-------cH----HHHH-HcC--------------
Confidence            5799999999999999999999999999999765 9999999862       11    1221 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          |...|+++++ ++|+++.++.|..+.+++.+.|++++..
T Consensus       116 --------------------i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~  153 (155)
T 2ppt_A          116 --------------------IQGIPAFILF-HKGRELARAAGARPASELVGFVRGKLGA  153 (155)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC-
T ss_pred             --------------------CCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHHhcc
Confidence                                2223387888 7999999999988999999999998864

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=4.4e-15  Score=99.04  Aligned_cols=105  Identities=13%  Similarity=0.149  Sum_probs=76.4

Q ss_pred             eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881           17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTR   94 (170)
Q Consensus        17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~   94 (170)
                      +.++++..+...-..++++||+||++||++|+...|.+.++.+++++.+  +.++.|+++.       .    .+.++ +
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~~~~-~   86 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATS-------A----SMLAS-K   86 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTT-------C----HHHHH-H
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcc-------c----HHHHH-H
Confidence            3444555443322368999999999999999999999999999998764  8888887652       1    12222 3


Q ss_pred             cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      ++                                  |...|+++++ ++|+ +..+.|..+.+++.+.|++++..
T Consensus        87 ~~----------------------------------v~~~Pt~~~~-~~G~-~~~~~g~~~~~~l~~~l~~~~~~  125 (140)
T 2dj1_A           87 FD----------------------------------VSGYPTIKIL-KKGQ-AVDYDGSRTQEEIVAKVREVSQP  125 (140)
T ss_dssp             TT----------------------------------CCSSSEEEEE-ETTE-EEECCSCCCHHHHHHHHHHHHSS
T ss_pred             CC----------------------------------CCccCeEEEE-ECCc-EEEcCCCCCHHHHHHHHHHhcCC
Confidence            22                                  2223388888 7898 66788888999999999998753

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.1e-14  Score=93.56  Aligned_cols=90  Identities=7%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|++++|+||++||++|+...|.+.++.++++..++.++.|+.+.       ..    +..+ +++              
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~~~~-~~~--------------   73 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSNVSFLSIDADE-------NS----EISE-LFE--------------   73 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEeccc-------CH----HHHH-HcC--------------
Confidence            489999999999999999999999999999755569999999862       11    2222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.|. .++++.+.|+++++
T Consensus        74 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~  109 (112)
T 3d6i_A           74 --------------------ISAVPYFIII-HKGTILKELSGA-DPKEYVSLLEDCKN  109 (112)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEECSC-CHHHHHHHHHHHHH
T ss_pred             --------------------CCcccEEEEE-ECCEEEEEecCC-CHHHHHHHHHHHHh
Confidence                                2223387777 799999999886 45568888888764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.58  E-value=8.7e-15  Score=93.86  Aligned_cols=92  Identities=20%  Similarity=0.241  Sum_probs=69.0

Q ss_pred             CCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           28 STYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        28 ~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .+.+|++++|+||++||++|+...|.++++.+++++  +.++.|+.+.       ...   +..+ +++           
T Consensus        20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~--v~~~~vd~~~-------~~~---~~~~-~~~-----------   75 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD--VIFLKLDCNQ-------ENK---TLAK-ELG-----------   75 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------TTH---HHHH-HHC-----------
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC--eEEEEEecCc-------chH---HHHH-HcC-----------
Confidence            344689999999999999999999999999999864  9999998752       111   2221 222           


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                             +...|+ ++++++|+++.++.|. ..+++.+.|+++++
T Consensus        76 -----------------------v~~~Pt-~~~~~~G~~~~~~~G~-~~~~l~~~l~~~~~  111 (111)
T 2pu9_C           76 -----------------------IRVVPT-FKILKENSVVGEVTGA-KYDKLLEAIQAARS  111 (111)
T ss_dssp             -----------------------CSBSSE-EEEESSSSEEEEEESS-CHHHHHHHHHHHHC
T ss_pred             -----------------------CCeeeE-EEEEeCCcEEEEEcCC-CHHHHHHHHHHhhC
Confidence                                   222237 6777999999998886 47788888888753

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.58  E-value=6e-15  Score=94.65  Aligned_cols=90  Identities=14%  Similarity=0.239  Sum_probs=71.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|++++|+||++||++|+...|.+.++.+++++. +.++.|+.+.       ..    +.++ +++              
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~--------------   74 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK-IEIVKLNIDE-------NP----GTAA-KYG--------------   74 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC-eEEEEEEcCC-------CH----HHHH-hCC--------------
Confidence            4799999999999999999999999999999764 9999998862       21    1222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        75 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  111 (112)
T 1t00_A           75 --------------------VMSIPTLNVY-QGGEVAKTIVGAKPKAAIVRDLEDFIA  111 (112)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTHHHHC
T ss_pred             --------------------CCcccEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhh
Confidence                                2222376666 799999999998888999999998875

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.58  E-value=8e-15  Score=95.38  Aligned_cols=90  Identities=20%  Similarity=0.261  Sum_probs=71.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|+++||+||++||++|+...+.++++.+++.+. +.++.|+++.       . .   +.++ +++              
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~-v~~~~vd~d~-------~-~---~l~~-~~~--------------   82 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK-VVMAKVDIDD-------H-T---DLAI-EYE--------------   82 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS-SEEEEEETTT-------T-H---HHHH-HTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEeCCC-------C-H---HHHH-HcC--------------
Confidence            5799999999999999999999999999998764 9999998862       1 1   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|++++.
T Consensus        83 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  119 (119)
T 1w4v_A           83 --------------------VSAVPTVLAM-KNGDVVDKFVGIKDEDQLEAFLKKLIG  119 (119)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------------CCcccEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhC
Confidence                                2222388888 899999999998889999999988763

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.58  E-value=1.6e-14  Score=93.91  Aligned_cols=105  Identities=14%  Similarity=0.048  Sum_probs=78.9

Q ss_pred             eeeCCCCCeecCC-CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc----CCcEEEEeecCCCCCCCCCChHHHHHH
Q 030881           16 SVKDARGHEVDLS-TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD----QGLEILAFPCNQFGEEEPGSNDQIADF   90 (170)
Q Consensus        16 ~l~~~~g~~~~l~-~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~v~~v~is~d~~~~~~~~~~~~~~~~   90 (170)
                      .+.++++..+... ..+++++||+||++||++|+...|.++++.+++++    .++.++.|+.+.       ..      
T Consensus         8 ~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~------   74 (121)
T 2djj_A            8 PVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA-------ND------   74 (121)
T ss_dssp             SSEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT-------SC------
T ss_pred             CeEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc-------cc------
Confidence            3456666666544 24789999999999999999999999999999986    258999998752       00      


Q ss_pred             HHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE-EEEeCCCCCchHHHHHHHHHhcC
Q 030881           91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        91 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i-~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                 +  ..    .        .        ..+|   ++++++++|++ +..+.|..+.+++.+.|++++..
T Consensus        75 -----------~--~~----~--------v--------~~~P---t~~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~  118 (121)
T 2djj_A           75 -----------V--PD----E--------I--------QGFP---TIKLYPAGAKGQPVTYSGSRTVEDLIKFIAENGKY  118 (121)
T ss_dssp             -----------C--SS----C--------C--------SSSS---EEEEECSSCTTSCCCCCCCSCHHHHHHHHHHTSSS
T ss_pred             -----------c--cc----c--------c--------CcCC---eEEEEeCcCCCCceEecCCCCHHHHHHHHHhccCc
Confidence                       0  00    0        0        2333   99999988885 66788888899999999988753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.58  E-value=1.4e-15  Score=103.00  Aligned_cols=90  Identities=14%  Similarity=0.066  Sum_probs=69.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+.+.|.+.++.++++++ +.++.|++|.       . .+   .++ +++              
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~-~~~~~vd~d~-------~-~~---l~~-~~~--------------   74 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM-AAIYLVDVDQ-------T-AV---YTQ-YFD--------------   74 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT-EEEEEEETTT-------C-CH---HHH-HTT--------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCc-------C-HH---HHH-HcC--------------
Confidence            4899999999999999999999999999999765 9999998862       1 12   222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEE---------EEeCC-CCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV---------DRYYP-TTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~---------~~~~~-~~~~~~l~~~l~~~l~  168 (170)
                                          |...|+++ ++++|+++         .++.| ..+.+++.+.|+++++
T Consensus        75 --------------------v~~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           75 --------------------ISYIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             --------------------CCSSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             --------------------CCccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence                                22223867 77899999         77888 7788889999988764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.57  E-value=8.4e-16  Score=106.02  Aligned_cols=47  Identities=15%  Similarity=0.098  Sum_probs=41.3

Q ss_pred             cCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           26 DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        26 ~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+++++|+++||+||++|||+|+.+.|.|++++++++  ++.++.|+.|
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~--~v~~~~v~~d   94 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP--NIELAIISKG   94 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT--TEEEEEECHH
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CcEEEEEECC
Confidence            4566789999999999999999999999999999875  4899999764

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.57  E-value=9.7e-15  Score=95.81  Aligned_cols=88  Identities=18%  Similarity=0.198  Sum_probs=68.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+++||+||++||++|+...|.++++.++++  ++.++.|+.|.       . .   +.++ +++              
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~vd~d~-------~-~---~l~~-~~~--------------   88 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP--NVLFLKVDTDE-------L-K---SVAS-DWA--------------   88 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------S-H---HHHH-HTT--------------
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CcEEEEEECcc-------C-H---HHHH-HcC--------------
Confidence            68999999999999999999999999999986  59999998762       1 1   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.| .+++++.+.|+++++
T Consensus        89 --------------------v~~~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~l~  124 (124)
T 1xfl_A           89 --------------------IQAMPTFMFL-KEGKILDKVVG-AKKDELQSTIAKHLA  124 (124)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHHCC
T ss_pred             --------------------CCccCEEEEE-ECCEEEEEEeC-CCHHHHHHHHHHhcC
Confidence                                2222376655 89999999888 478889999988764

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.57  E-value=3.3e-15  Score=98.63  Aligned_cols=90  Identities=20%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.++++.++++++ +.++.|+++.       ..    +.++ +                
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~~~-------~~----~l~~-~----------------   89 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTAP-K----------------   89 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT-EEEEEEETTT-------CC----TTSG-G----------------
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEECCC-------CH----HHHH-H----------------
Confidence            5899999999999999999999999999999764 9999998863       11    0110 1                


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                        +++...|+++++ ++|+++..+.|..+.+++.+.|+++++
T Consensus        90 ------------------~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  128 (128)
T 2o8v_B           90 ------------------YGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  128 (128)
T ss_dssp             ------------------GTCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ------------------cCCCccCEEEEE-eCCEEEEEEcCCCCHHHHHHHHHHhhC
Confidence                              123333498888 899999999998889999999998874

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.57  E-value=1.9e-14  Score=91.51  Aligned_cols=90  Identities=16%  Similarity=0.233  Sum_probs=70.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|++++|+||++||++|+...|.++++.++++++ +.++.|+.+.       ..    +.++ +++              
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~--------------   70 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE-------SP----NVAS-EYG--------------   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHHH-HHT--------------
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc-eEEEEEECCC-------CH----HHHH-HCC--------------
Confidence            5799999999999999999999999999999764 9999998762       21    1221 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.|..+.+++.+.|+++++
T Consensus        71 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  107 (107)
T 1dby_A           71 --------------------IRSIPTIMVF-KGGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             --------------------CCSSCEEEEE-SSSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             --------------------CCcCCEEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence                                1122386666 799999999998888999999998874

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.57  E-value=4.9e-15  Score=93.40  Aligned_cols=90  Identities=18%  Similarity=0.214  Sum_probs=71.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ++++++|+||++||++|....+.++++.+++++  +.++.|+.+.       ..    +..+ +++              
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~v~~~~-------~~----~~~~-~~~--------------   66 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ--VGFGKLNSDE-------NP----DIAA-RYG--------------   66 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC--ceEEEEECCC-------CH----HHHH-hCC--------------
Confidence            589999999999999999999999999999876  9999998862       11    2222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|++++.+
T Consensus        67 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~~  104 (104)
T 2e0q_A           67 --------------------VMSLPTVIFF-KDGEPVDEIIGAVPREEIEIRIKNLLGE  104 (104)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             --------------------ccccCEEEEE-ECCeEhhhccCCCCHHHHHHHHHHHhcC
Confidence                                2222387888 8999999999988889999999998753

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.56  E-value=8.3e-15  Score=93.15  Aligned_cols=88  Identities=17%  Similarity=0.266  Sum_probs=68.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.++++.+++.  ++.++.|++|.       .+    +.+. ++               
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~--~~~~~~vd~~~-------~~----~l~~-~~---------------   67 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN--YVEKIEILLQD-------MQ----EIAG-RY---------------   67 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT--TEEEEEEEECC-------C---------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC--CceEEEEECCC-------CH----HHHH-hc---------------
Confidence            58999999999999999999999999999984  49999998863       11    1111 11               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                         ++...|+++++ ++|+++.++.|..+.+++.+.|++++
T Consensus        68 -------------------~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~l~~~l~~~~  104 (105)
T 4euy_A           68 -------------------AVFTGPTVLLF-YNGKEILRESRFISLENLERTIQLFE  104 (105)
T ss_dssp             ---------------------CCCCEEEEE-ETTEEEEEEESSCCHHHHHHHHHTTC
T ss_pred             -------------------CCCCCCEEEEE-eCCeEEEEEeCCcCHHHHHHHHHHhh
Confidence                               12222388888 59999999999889999999998876

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.56  E-value=1.9e-14  Score=92.18  Aligned_cols=88  Identities=16%  Similarity=0.079  Sum_probs=68.8

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      |+++||+||++||++|+...|.++++.+++++ ++.++.|+.+.       . .   +.++ +++               
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~-~---~~~~-~~~---------------   75 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAG-KVIFLKVDVDA-------V-A---AVAE-AAG---------------   75 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TSEEEEEETTT-------T-H---HHHH-HHT---------------
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCC-CeEEEEEECCc-------h-H---HHHH-HcC---------------
Confidence            89999999999999999999999999999975 59999998862       1 1   2221 222               


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         +...|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        76 -------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  111 (112)
T 1ep7_A           76 -------------------ITAMPTFHVY-KDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             -------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             -------------------CCcccEEEEE-ECCeEEEEEcCC-CHHHHHHHHHHHhc
Confidence                               1122375555 899999999887 88899999999875

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.56  E-value=4.9e-15  Score=94.26  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=71.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|....+.++++.++++++ +.++.|+.+.       ..    +..+ +++              
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~--------------   69 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK-LLVAKLDVDE-------NP----KTAM-RYR--------------   69 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc-eEEEEEECCC-------CH----hHHH-hCC--------------
Confidence            5799999999999999999999999999999754 9999999862       21    1222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|++++..
T Consensus        70 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~~  107 (109)
T 2yzu_A           70 --------------------VMSIPTVILF-KDGQPVEVLVGAQPKRNYQAKIEKHLPA  107 (109)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC--
T ss_pred             --------------------CCcCCEEEEE-eCCcEeeeEeCCCCHHHHHHHHHHHhhh
Confidence                                2223388888 8999999999988899999999998864

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.56  E-value=3e-14  Score=94.18  Aligned_cols=111  Identities=19%  Similarity=0.123  Sum_probs=77.7

Q ss_pred             ccceeeCCCCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHH
Q 030881           13 FDLSVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADF   90 (170)
Q Consensus        13 p~f~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~   90 (170)
                      ++-.+.++++..+...-. .++++||+||++||++|+.+.|.+.++.+++++. ++.++.|+.+.       .       
T Consensus         5 ~~~~v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~-------~-------   70 (133)
T 2dj3_A            5 SSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATA-------N-------   70 (133)
T ss_dssp             SSCSSEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTT-------S-------
T ss_pred             CCCceEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCc-------C-------
Confidence            344455666665544433 5899999999999999999999999999999753 48888887642       0       


Q ss_pred             HHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEE-EeC-CCCCchHHHHHHHHHhc
Q 030881           91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD-RYY-PTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        91 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~-~~~-~~~~~~~l~~~l~~~l~  168 (170)
                               +.+         ..   .           ++|...|++++++++|++.. .+. |..+.+++.+.|++++.
T Consensus        71 ---------~~~---------~~---~-----------~~v~~~Pt~~~~~~g~~~~~~~~~gg~~~~~~l~~~l~~~~~  118 (133)
T 2dj3_A           71 ---------DIT---------ND---Q-----------YKVEGFPTIYFAPSGDKKNPIKFEGGNRDLEHLSKFIDEHAT  118 (133)
T ss_dssp             ---------CCC---------CS---S-----------CCCSSSSEEEEECTTCTTSCEECCSSCCSTTHHHHHHHHHSS
T ss_pred             ---------HHH---------Hh---h-----------cCCCcCCEEEEEeCCCcccceEecCCCcCHHHHHHHHHHhcc
Confidence                     000         00   0           23334459999988776543 345 55788899999998875


Q ss_pred             C
Q 030881          169 L  169 (170)
Q Consensus       169 ~  169 (170)
                      .
T Consensus       119 ~  119 (133)
T 2dj3_A          119 K  119 (133)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.3e-14  Score=95.21  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=68.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +++ +||+||++||++|+...|.+.++.+++++.++.++.|+++.       ..    +.++ +++              
T Consensus        22 ~~~-vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~-------~~----~~~~-~~~--------------   74 (126)
T 1x5e_A           22 EGD-WMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTE-------QP----GLSG-RFI--------------   74 (126)
T ss_dssp             SSE-EEEEEECSSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcC-------CH----HHHH-HcC--------------
Confidence            444 99999999999999999999999999987679999998862       21    1222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|++ .++.|..+.+++.+.|++++.
T Consensus        75 --------------------v~~~Pt~~~~-~~G~~-~~~~G~~~~~~l~~~l~~~~~  110 (126)
T 1x5e_A           75 --------------------INALPTIYHC-KDGEF-RRYQGPRTKKDFINFISDKEW  110 (126)
T ss_dssp             --------------------CCSSSEEEEE-ETTEE-EECCSCCCHHHHHHHHHTCGG
T ss_pred             --------------------CcccCEEEEE-eCCeE-EEeecCCCHHHHHHHHHHHhh
Confidence                                2222388888 88995 678888888899999988764

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.56  E-value=6e-15  Score=98.75  Aligned_cols=90  Identities=9%  Similarity=0.034  Sum_probs=71.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.+.++.++++++ +.++.|+++.       . .   +.++ +++              
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~-~---~l~~-~~~--------------   75 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS-AVFGRINIAT-------N-P---WTAE-KYG--------------   75 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-SEEEEEETTT-------C-H---HHHH-HHT--------------
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc-eEEEEEECCc-------C-H---hHHH-HCC--------------
Confidence            4899999999999999999999999999999875 9999998862       2 2   2222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          |...|+++++ ++|+++..+.|..+.+++.+.|+++++
T Consensus        76 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  112 (140)
T 3hz4_A           76 --------------------VQGTPTFKFF-CHGRPVWEQVGQIYPSILKNAVRDMLQ  112 (140)
T ss_dssp             --------------------CCEESEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             --------------------CCcCCEEEEE-eCCcEEEEEcCCCCHHHHHHHHHHHhc
Confidence                                2222376776 799999999998899999999998874

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.56  E-value=2.4e-15  Score=107.31  Aligned_cols=107  Identities=13%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             ceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881           15 LSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTR   94 (170)
Q Consensus        15 f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~   94 (170)
                      ..+.+.++..+.....+|+++||+||++||++|+...|.+.++.+++++. +.++.|+++.       ..    +.+. +
T Consensus        97 ~~v~~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~~~-------~~----~l~~-~  163 (210)
T 3apq_A           97 PEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL-LRIGAVNCGD-------DR----MLCR-M  163 (210)
T ss_dssp             TTSEECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT-BEEEEEETTT-------CH----HHHH-H
T ss_pred             CceEEecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc-eEEEEEECCc-------cH----HHHH-H
Confidence            33444444444333357899999999999999999999999999999764 9999998862       21    2222 3


Q ss_pred             cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                      ++                                  |...|+++++ ++|+++..+.|..+.+++.+.|++++..
T Consensus       164 ~~----------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~  203 (210)
T 3apq_A          164 KG----------------------------------VNSYPSLFIF-RSGMAAVKYNGDRSKESLVAFAMQHVRS  203 (210)
T ss_dssp             TT----------------------------------CCSSSEEEEE-CTTSCCEECCSCCCHHHHHHHHHHHHHC
T ss_pred             cC----------------------------------CCcCCeEEEE-ECCCceeEecCCCCHHHHHHHHHHhCcc
Confidence            22                                  2223388888 8999999999988999999999988753

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.56  E-value=7.3e-15  Score=97.96  Aligned_cols=89  Identities=24%  Similarity=0.363  Sum_probs=69.9

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+|+++||+||++||++|+.+.|.++++.++++  ++.++.|++|.       .    .+..+ +++             
T Consensus        44 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~--~v~~~~v~~~~-------~----~~~~~-~~~-------------   96 (139)
T 3d22_A           44 RDGKIVLANFSARWCGPSRQIAPYYIELSENYP--SLMFLVIDVDE-------L----SDFSA-SWE-------------   96 (139)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S----HHHHH-HTT-------------
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCcc-------c----HHHHH-HcC-------------
Confidence            458999999999999999999999999999984  59999998862       1    12222 322             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           +...|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        97 ---------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~~~  132 (139)
T 3d22_A           97 ---------------------IKATPTFFFL-RDGQQVDKLVGA-NKPELHKKITAILD  132 (139)
T ss_dssp             ---------------------CCEESEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHH
T ss_pred             ---------------------CCcccEEEEE-cCCeEEEEEeCC-CHHHHHHHHHHHhc
Confidence                                 2223387777 899999999887 78889999988875

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.56  E-value=1.2e-14  Score=91.90  Aligned_cols=102  Identities=14%  Similarity=0.186  Sum_probs=74.5

Q ss_pred             eCCCCCeecCCC-CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           18 KDARGHEVDLST-YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        18 ~~~~g~~~~l~~-~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      .+.++..+...- -.+++++|+||++||++|+...+.++++.++++++ +.++.|+.+.       ..    +.++ +++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~   69 (105)
T 1fb6_A            3 QDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE-------AP----GIAT-QYN   69 (105)
T ss_dssp             EECCTTTHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHHH-HTT
T ss_pred             eechhhhHHHHHhcCCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc-eEEEEEcCcc-------hH----HHHH-hCC
Confidence            344554443322 25799999999999999999999999999999764 9999998762       21    2222 322


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                                        +...|+++++ ++|+++..+.|..+.+++.+.|+++|
T Consensus        70 ----------------------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l  105 (105)
T 1fb6_A           70 ----------------------------------IRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL  105 (105)
T ss_dssp             ----------------------------------CCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             ----------------------------------CCcccEEEEE-eCCeEEEEEecCCCHHHHHHHHHhhC
Confidence                                              2222376665 79999999999888889999998875

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.55  E-value=1.2e-14  Score=92.14  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=70.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ++++++|+||++||++|+...|.++++.++++++ +.++.|+.+.       .. +   .++ +++              
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~-~---~~~-~~~--------------   70 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK-ADILKLDVDE-------NP-S---TAA-KYE--------------   70 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-H---HHH-HTT--------------
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-cEEEEEECCc-------CH-H---HHH-hCC--------------
Confidence            7899999999999999999999999999999866 9999998862       22 1   221 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          +...|++++++ +|+++..+.|..+.+++.+.|+++|
T Consensus        71 --------------------v~~~Pt~~~~~-~G~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 3die_A           71 --------------------VMSIPTLIVFK-DGQPVDKVVGFQPKENLAEVLDKHL  106 (106)
T ss_dssp             --------------------CCSBSEEEEEE-TTEEEEEEESCCCHHHHHHHHHTTC
T ss_pred             --------------------CcccCEEEEEe-CCeEEEEEeCCCCHHHHHHHHHHhC
Confidence                                22223877884 9999999999888899999988764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.55  E-value=1.6e-14  Score=91.49  Aligned_cols=89  Identities=19%  Similarity=0.232  Sum_probs=69.9

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      +.++++++|+||++||++|+...|.+.++.+++++  +.++.|+.+.       ..    +..+ +++            
T Consensus        17 ~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~vd~~~-------~~----~~~~-~~~------------   70 (105)
T 3m9j_A           17 AAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD-------CQ----DVAS-ESE------------   70 (105)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT--SEEEEEETTT-------CH----HHHH-HTT------------
T ss_pred             hcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC--eEEEEEEhhh-------hH----HHHH-HcC------------
Confidence            34689999999999999999999999999999865  9999998762       21    2222 222            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                            +...|+++++ ++|+++.++.|. +.+++.+.|+++|
T Consensus        71 ----------------------v~~~Pt~~~~-~~g~~~~~~~g~-~~~~l~~~l~~~l  105 (105)
T 3m9j_A           71 ----------------------VKSMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             ----------------------CCBSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHC
T ss_pred             ----------------------CCcCcEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhC
Confidence                                  2223388888 789999999888 8888999998875

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.55  E-value=1.8e-14  Score=92.10  Aligned_cols=90  Identities=16%  Similarity=0.217  Sum_probs=71.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++.++++++ +.++.|+++.       .+    +.++ +++              
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-v~~~~vd~~~-------~~----~l~~-~~~--------------   73 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES-FGFYYVDVEE-------EK----TLFQ-RFS--------------   73 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCc-------Ch----hHHH-hcC--------------
Confidence            5799999999999999999999999999999764 9999998862       21    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.|..+.+++.+.|++++.
T Consensus        74 --------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~  110 (111)
T 3gnj_A           74 --------------------LKGVPQILYF-KDGEYKGKMAGDVEDDEVEQMIADVLE  110 (111)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEEEESSCCHHHHHHHHHHHHH
T ss_pred             --------------------CCcCCEEEEE-ECCEEEEEEeccCCHHHHHHHHHHHhc
Confidence                                2223387888 789999999998899999999998874

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.54  E-value=4.2e-14  Score=89.71  Aligned_cols=89  Identities=12%  Similarity=0.166  Sum_probs=70.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...+.++++.+++++ ++.++.|+++.       ..    +.++ +++              
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~-------~~----~~~~-~~~--------------   71 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAG-KVTVAKVNIDD-------NP----ETPN-AYQ--------------   71 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT-SEEEEEEETTT-------CC----HHHH-HTT--------------
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhCC-cEEEEEEECCC-------CH----HHHH-hcC--------------
Confidence            579999999999999999999999999999975 49999998862       11    1221 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|++++
T Consensus        72 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l  107 (107)
T 2i4a_A           72 --------------------VRSIPTLMLV-RDGKVIDKKVGALPKSQLKAWVESAQ  107 (107)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHTC
T ss_pred             --------------------CCccCEEEEE-eCCEEEEEecCCCCHHHHHHHHHhcC
Confidence                                2223388888 89999999999888888999888753

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.31  E-value=4.4e-16  Score=102.76  Aligned_cols=103  Identities=7%  Similarity=0.120  Sum_probs=76.3

Q ss_pred             CCeecCCCCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCC
Q 030881           22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSE   98 (170)
Q Consensus        22 g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~   98 (170)
                      ...+.+...+||++||+||++||++|+...|.+   .++.+.+++ ++.++.|+++.         ++..+.++ +    
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~---------~~~~~~~~-~----   73 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEA-RFVVASVSVDT---------PEGQELAR-R----   73 (130)
Confidence            566777778899999999999999999999999   888887765 38888887641         11111111 1    


Q ss_pred             CCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECC-CCcE--EEEeCCCCCchHHHHHHHHHhcC
Q 030881           99 FPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQV--VDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        99 ~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i--~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                    +++...|+++++|+ +|++  +.++.|..+.+++.+.|++++.+
T Consensus        74 ------------------------------~~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~~l~~~l~~~~~~  117 (130)
T 2lst_A           74 ------------------------------YRVPGTPTFVFLVPKAGAWEEVGRLFGSRPRAEFLKELRQVCVK  117 (130)
Confidence                                          11222349999996 5999  88888888888999999888753

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.54  E-value=8.1e-17  Score=110.86  Aligned_cols=102  Identities=12%  Similarity=0.115  Sum_probs=71.0

Q ss_pred             CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCce
Q 030881           23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIF  102 (170)
Q Consensus        23 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~  102 (170)
                      ..+.....+||++||+||++||++|+.+.|.|+++.+.+.. ++.|+.|+++.       ..+.+   . ..++.     
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~-~~~~~~v~~d~-------~~~~~---~-~~~~~-----   99 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNFVMVNLED-------EEEPK---D-EDFSP-----   99 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTSEEEEEEG-------GGSCS---C-GGGCT-----
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhc-CCeEEEEEecC-------CchHH---H-HHhcc-----
Confidence            34555556899999999999999999999999997665543 37778887752       11100   0 01110     


Q ss_pred             EEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC----------CCchHHHHHHHHHhc
Q 030881          103 EKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT----------TSLLSLEHDIKKLLG  168 (170)
Q Consensus       103 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~----------~~~~~l~~~l~~~l~  168 (170)
                                                 .+...|+++++|++|+++.++.|.          .+.+++.+.|+++++
T Consensus       100 ---------------------------~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l~  148 (164)
T 1sen_A          100 ---------------------------DGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQE  148 (164)
T ss_dssp             ---------------------------TCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHHH
T ss_pred             ---------------------------cCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHHH
Confidence                                       011123999999999999887774          677788888888764

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.53  E-value=2.4e-14  Score=93.37  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=70.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +++++||+||++||++|....+.++++.++++++++.++.|+.+.       ..    +.++ +++              
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~-------~~----~~~~-~~~--------------   85 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDE-------QS----QIAQ-EVG--------------   85 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTT-------CH----HHHH-HHT--------------
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcC-------CH----HHHH-HcC--------------
Confidence            689999999999999999999999999999987779999999862       21    1221 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.|. +.+++.+.|+++++
T Consensus        86 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  121 (121)
T 2j23_A           86 --------------------IRAMPTFVFF-KNGQKIDTVVGA-DPSKLQAAITQHSA  121 (121)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHTC
T ss_pred             --------------------CCcccEEEEE-ECCeEEeeEcCC-CHHHHHHHHHHhhC
Confidence                                1122386776 699999998887 88899999998864

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.53  E-value=2.9e-14  Score=96.77  Aligned_cols=89  Identities=10%  Similarity=0.094  Sum_probs=69.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+++||+||++||++|+...|.+.++.++++  ++.++.|+++.       ..    +.++ +++              
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~~~-------~~----~l~~-~~~--------------   82 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP--QVSFVKLEAEG-------VP----EVSE-KYE--------------   82 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------SH----HHHH-HTT--------------
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC--CeEEEEEECCC-------CH----HHHH-HcC--------------
Confidence            48999999999999999999999999999984  59999998862       11    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|++++++ +|+++.++.|. .++++.+.|++++..
T Consensus        83 --------------------v~~~Pt~~~~~-~G~~~~~~~G~-~~~~l~~~i~~~l~~  119 (153)
T 2wz9_A           83 --------------------ISSVPTFLFFK-NSQKIDRLDGA-HAPELTKKVQRHASS  119 (153)
T ss_dssp             --------------------CCSSSEEEEEE-TTEEEEEEESS-CHHHHHHHHHHHSCT
T ss_pred             --------------------CCCCCEEEEEE-CCEEEEEEeCC-CHHHHHHHHHHHhcc
Confidence                                22233989998 99999988884 677899999988753

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=3.4e-14  Score=93.76  Aligned_cols=91  Identities=14%  Similarity=0.131  Sum_probs=70.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc---CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD---QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .++++||+||++||++|+...|.+.++.+++++   .++.++.|+.+.       . .   +.++ +++           
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~---~l~~-~~~-----------   80 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATV-------N-Q---VLAS-RYG-----------   80 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTT-------C-C---HHHH-HHT-----------
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCC-------C-H---HHHH-hCC-----------
Confidence            579999999999999999999999999999972   349999998762       1 1   1221 211           


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                             +...|+++++++ |+++..+.|..+.+++.+.|++++.
T Consensus        81 -----------------------v~~~Pt~~~~~~-g~~~~~~~G~~~~~~l~~~l~~~~~  117 (133)
T 1x5d_A           81 -----------------------IRGFPTIKIFQK-GESPVDYDGGRTRSDIVSRALDLFS  117 (133)
T ss_dssp             -----------------------CCSSSEEEEEET-TEEEEEECSCCSHHHHHHHHHHHHH
T ss_pred             -----------------------CCeeCeEEEEeC-CCceEEecCCCCHHHHHHHHHHHhh
Confidence                                   222238899987 8888899998899999999988874

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.53  E-value=2.3e-14  Score=93.61  Aligned_cols=90  Identities=19%  Similarity=0.219  Sum_probs=67.6

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+|++++|+||++||++|+...|.++++.++++  ++.++.|+.+.       ...   +..+ +++             
T Consensus        35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~~~~~~vd~~~-------~~~---~~~~-~~~-------------   88 (124)
T 1faa_A           35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL--DVIFLKLDCNQ-------ENK---TLAK-ELG-------------   88 (124)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECSS-------TTH---HHHH-HHC-------------
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC--CCEEEEEecCc-------chH---HHHH-HcC-------------
Confidence            468999999999999999999999999999986  49999998752       111   1221 222             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           +...|+ +++.++|+++.++.|.. .+++.+.|+++++
T Consensus        89 ---------------------v~~~Pt-~~~~~~G~~~~~~~G~~-~~~l~~~i~~~~~  124 (124)
T 1faa_A           89 ---------------------IRVVPT-FKILKENSVVGEVTGAK-YDKLLEAIQAARS  124 (124)
T ss_dssp             ---------------------CSSSSE-EEEEETTEEEEEEESSC-HHHHHHHHHHHTC
T ss_pred             ---------------------CCeeeE-EEEEeCCcEEEEEcCCC-HHHHHHHHHHhhC
Confidence                                 222237 56668999999988865 7888888887753

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.53  E-value=2.8e-14  Score=93.78  Aligned_cols=89  Identities=7%  Similarity=0.148  Sum_probs=69.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +++++||+||++||++|....|.+.++.++++  ++.++.|+++.       . .   +.++ +++              
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------~-~---~l~~-~~~--------------   87 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------N-S---EIVS-KCR--------------   87 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------C-H---HHHH-HTT--------------
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC--CCEEEEEECCC-------C-H---HHHH-HcC--------------
Confidence            68999999999999999999999999999984  49999999862       1 1   1222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|+++++ ++|+++..+.| .+++++.+.|+++++.
T Consensus        88 --------------------v~~~Pt~~i~-~~G~~~~~~~G-~~~~~l~~~l~~~l~~  124 (125)
T 1r26_A           88 --------------------VLQLPTFIIA-RSGKMLGHVIG-ANPGMLRQKLRDIIKD  124 (125)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHHHC
T ss_pred             --------------------CCcccEEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHhcC
Confidence                                2223385555 89999999888 6788899999988753

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.53  E-value=3.6e-14  Score=91.03  Aligned_cols=89  Identities=7%  Similarity=0.053  Sum_probs=68.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|....|.+.++.+++.  ++.++.|+.+.       .    .+.++ +++              
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~--~v~~~~vd~~~-------~----~~l~~-~~~--------------   69 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP--QVAISSVDSEA-------R----PELMK-ELG--------------   69 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT--TSCEEEEEGGG-------C----HHHHH-HTT--------------
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC--CcEEEEEcCcC-------C----HHHHH-HcC--------------
Confidence            57899999999999999999999999998875  48999998752       1    11221 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++.++.|..+++++.+.|+....
T Consensus        70 --------------------v~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~~~~~~~  106 (110)
T 2l6c_A           70 --------------------FERVPTLVFI-RDGKVAKVFSGIMNPRELQALYASIHH  106 (110)
T ss_dssp             --------------------CCSSCEEEEE-ESSSEEEEEESCCCHHHHHHHHHTC--
T ss_pred             --------------------CcccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHHhh
Confidence                                2223388888 899999999998899999998887654

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.52  E-value=7e-14  Score=93.34  Aligned_cols=104  Identities=14%  Similarity=0.164  Sum_probs=70.8

Q ss_pred             eCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881           18 KDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS   97 (170)
Q Consensus        18 ~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~   97 (170)
                      .+.++..+...-..++.+||+||++||++|....+.++++.+++++. +.++.|+.+.       ..    +... +++ 
T Consensus        36 ~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~-v~~~~vd~~~-------~~----~l~~-~~~-  101 (140)
T 1v98_A           36 VEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR-LKVVKVNVDE-------HP----GLAA-RYG-  101 (140)
T ss_dssp             -------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CH----HHHH-HTT-
T ss_pred             ccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc-eEEEEEECCC-------CH----HHHH-HCC-
Confidence            34444444333223333999999999999999999999999999764 9999998862       11    2222 322 


Q ss_pred             CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881           98 EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus        98 ~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                       +...|+++++ ++|+++..+.|..+.+++.+.|++++++
T Consensus       102 ---------------------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~l~~  139 (140)
T 1v98_A          102 ---------------------------------VRSVPTLVLF-RRGAPVATWVGASPRRVLEERLRPYLEG  139 (140)
T ss_dssp             ---------------------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHTC
T ss_pred             ---------------------------------CCccCEEEEE-eCCcEEEEEeCCCCHHHHHHHHHHHHcc
Confidence                                             2222387777 7999999999988889999999999865

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.52  E-value=3.1e-14  Score=92.16  Aligned_cols=90  Identities=21%  Similarity=0.291  Sum_probs=67.6

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      +.+.+|++++|+||++||++|+...|.++++.+++   ++.++.|+.+.       . .   +.++ +++          
T Consensus        28 l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~~~~~~vd~~~-------~-~---~~~~-~~~----------   82 (117)
T 2xc2_A           28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---DAIFVKVDVDK-------L-E---ETAR-KYN----------   82 (117)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---SSEEEEEETTT-------S-H---HHHH-HTT----------
T ss_pred             HHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---CcEEEEEECCc-------c-H---HHHH-HcC----------
Confidence            33347899999999999999999999999999887   59999998762       1 1   2222 322          


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                              +...|+++++ ++|+++.++.| .+++++.+.|+++|
T Consensus        83 ------------------------v~~~Pt~~~~-~~G~~~~~~~G-~~~~~l~~~l~~~l  117 (117)
T 2xc2_A           83 ------------------------ISAMPTFIAI-KNGEKVGDVVG-ASIAKVEDMIKKFI  117 (117)
T ss_dssp             ------------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             ------------------------CCccceEEEE-eCCcEEEEEeC-CCHHHHHHHHHHhC
Confidence                                    2222375555 79999999888 57788888888764

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.51  E-value=5.6e-14  Score=89.44  Aligned_cols=87  Identities=18%  Similarity=0.214  Sum_probs=66.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ++++++|+||++||++|+...|.++++.++++  ++.++.|+.+.       . .   +..+ +++              
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~--~~~~~~vd~~~-------~-~---~~~~-~~~--------------   71 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP--QAVFLEVDVHQ-------C-Q---GTAA-TNN--------------   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S-H---HHHH-HTT--------------
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC--CcEEEEEECcc-------C-H---HHHH-hcC--------------
Confidence            58999999999999999999999999999984  49999998862       2 1   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          +...|+++++ ++|+++.++.|. ..+++.+.|++++
T Consensus        72 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l  106 (107)
T 1gh2_A           72 --------------------ISATPTFQFF-RNKVRIDQYQGA-DAVGLEEKIKQHL  106 (107)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             --------------------CCcccEEEEE-ECCeEEEEEeCC-CHHHHHHHHHHhc
Confidence                                2222387777 789999998884 4556888888765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.51  E-value=5.2e-14  Score=90.43  Aligned_cols=88  Identities=15%  Similarity=0.144  Sum_probs=67.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+++||+||++||++|....+.+.++.++++  ++.++.|+++.       . .   +.++ +++              
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~v~~~~vd~~~-------~-~---~~~~-~~~--------------   76 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--KMVFIKVDVDE-------V-S---EVTE-KEN--------------   76 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------T-H---HHHH-HTT--------------
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC-------C-H---HHHH-HcC--------------
Confidence            68999999999999999999999999999986  49999998862       1 1   2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +...|+++++ ++|+++..+.|. +.+++.+.|+++++
T Consensus        77 --------------------v~~~Pt~~~~-~~G~~~~~~~G~-~~~~l~~~l~~~l~  112 (112)
T 1syr_A           77 --------------------ITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEKYAA  112 (112)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHTTC-
T ss_pred             --------------------CCcccEEEEE-ECCcEEEEEeCC-CHHHHHHHHHHhhC
Confidence                                2222375555 699999999887 88889999988763

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.51  E-value=4.5e-14  Score=91.25  Aligned_cols=85  Identities=22%  Similarity=0.287  Sum_probs=64.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+++||+||++||++|+...|.++++.+++++  +.++.|+++.       ..    +.++ +++              
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~--v~~~~vd~~~-------~~----~l~~-~~~--------------   80 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD--VRFVKCDVDE-------SP----DIAK-ECE--------------   80 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT--SEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC--CEEEEEECCC-------CH----HHHH-HCC--------------
Confidence            589999999999999999999999999999865  9999998862       21    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                                          +...|+++++ ++|+++.++.|.. .+++.+.|++
T Consensus        81 --------------------v~~~Pt~~~~-~~G~~~~~~~G~~-~~~l~~~l~~  113 (114)
T 2oe3_A           81 --------------------VTAMPTFVLG-KDGQLIGKIIGAN-PTALEKGIKD  113 (114)
T ss_dssp             --------------------CCSBSEEEEE-ETTEEEEEEESSC-HHHHHHHHHT
T ss_pred             --------------------CCcccEEEEE-eCCeEEEEEeCCC-HHHHHHHHHh
Confidence                                2222376655 8999999988876 7777777764

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.51  E-value=7.9e-14  Score=88.30  Aligned_cols=89  Identities=21%  Similarity=0.313  Sum_probs=67.3

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .++++++|+||++||++|....+.++++.+++++ ++.++.|+.+.       ..    +.++ +++             
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~v~~~~-------~~----~~~~-~~~-------------   71 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFAD-NVVVLKVDVDE-------CE----DIAM-EYN-------------   71 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT-TEEEEEEETTT-------CH----HHHH-HTT-------------
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCC-CeEEEEEeccc-------hH----HHHH-HcC-------------
Confidence            4689999999999999999999999999999863 49999998762       11    2222 222             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                           +...|+++++ ++|+++..+.| .+++++.+.|+++|
T Consensus        72 ---------------------v~~~Pt~~~~-~~G~~~~~~~g-~~~~~l~~~i~~~l  106 (106)
T 1xwb_A           72 ---------------------ISSMPTFVFL-KNGVKVEEFAG-ANAKRLEDVIKANI  106 (106)
T ss_dssp             ---------------------CCSSSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHTC
T ss_pred             ---------------------CCcccEEEEE-cCCcEEEEEcC-CCHHHHHHHHHHhC
Confidence                                 2222375555 78999999888 67888888888764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.51  E-value=9.7e-15  Score=98.57  Aligned_cols=90  Identities=9%  Similarity=0.005  Sum_probs=66.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||.|||+||++|+...|.|.++.+++.++ +.|+.|++|..       +    ++.. ++               
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~-v~f~kVDVDe~-------~----e~a~-~y---------------   91 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF-CVIYLVDITEV-------P----DFNT-MY---------------   91 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTC-------C----TTTT-TT---------------
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC-cEEEEEECCCC-------H----HHHH-Hc---------------
Confidence            4689999999999999999999999999999755 89999998731       1    1111 22               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEE--E-------EeCCCCC-chHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV--D-------RYYPTTS-LLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~--~-------~~~~~~~-~~~l~~~l~~~l~  168 (170)
                                         +|...||++++ ++|+.+  .       +..|..+ .+++.+.|+++++
T Consensus        92 -------------------~V~siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r  139 (160)
T 2av4_A           92 -------------------ELYDPVSVMFF-YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFR  139 (160)
T ss_dssp             -------------------TCCSSEEEEEE-ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHH
T ss_pred             -------------------CCCCCCEEEEE-ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHH
Confidence                               22223376555 577777  4       6777666 7889999888775

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.51  E-value=6.4e-14  Score=90.49  Aligned_cols=89  Identities=20%  Similarity=0.271  Sum_probs=68.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|+++||+||++||++|+...+.++++.++++  ++.++.|+.+.       .    .+.++ +++              
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~----~~~~~-~~~--------------   78 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--GAIFLKVDVDE-------L----KDVAE-AYN--------------   78 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------S----HHHHH-HTT--------------
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--CcEEEEEEccc-------C----HHHHH-HcC--------------
Confidence            48999999999999999999999999999986  59999998762       1    12222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|+++++ ++|+++..+.| .+.+++.+.|+++++.
T Consensus        79 --------------------v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~~  115 (118)
T 2vm1_A           79 --------------------VEAMPTFLFI-KDGEKVDSVVG-GRKDDIHTKIVALMGS  115 (118)
T ss_dssp             --------------------CCSBSEEEEE-ETTEEEEEEES-CCHHHHHHHHHHHHC-
T ss_pred             --------------------CCcCcEEEEE-eCCeEEEEecC-CCHHHHHHHHHHHhcc
Confidence                                2222376666 79999999888 5788899999998864

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.51  E-value=5.1e-14  Score=88.88  Aligned_cols=89  Identities=17%  Similarity=0.278  Sum_probs=67.7

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      +..|++++|+||++||++|....+.++++.++++  ++.++.|+.+.       ..    +.++ +++            
T Consensus        16 ~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~--~~~~~~v~~~~-------~~----~~~~-~~~------------   69 (104)
T 2vim_A           16 ENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP--EVEFAKVDVDQ-------NE----EAAA-KYS------------   69 (104)
T ss_dssp             TTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEETTT-------CH----HHHH-HTT------------
T ss_pred             hcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC--CCEEEEEeccC-------CH----HHHH-HcC------------
Confidence            3468999999999999999999999999999986  59999998862       11    2222 222            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                            +...|+++++ ++|+++.++.| .+.+++.+.|++++
T Consensus        70 ----------------------v~~~Pt~~~~-~~g~~~~~~~G-~~~~~l~~~l~~~l  104 (104)
T 2vim_A           70 ----------------------VTAMPTFVFI-KDGKEVDRFSG-ANETKLRETITRHK  104 (104)
T ss_dssp             ----------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHC
T ss_pred             ----------------------CccccEEEEE-eCCcEEEEEeC-CCHHHHHHHHHhhC
Confidence                                  2222386666 58999999888 57888998888764

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.50  E-value=1.4e-13  Score=88.19  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=68.7

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ..|+++||+||++||++|....+.++++.++++  ++.++.|+.+.       .. ++   .+ ++++            
T Consensus        24 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------~~-~~---~~-~~~v------------   77 (113)
T 1ti3_A           24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP--NVTFLKVDVDE-------LK-AV---AE-EWNV------------   77 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS--SEEEEEEETTT-------CH-HH---HH-HHHC------------
T ss_pred             hcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC--CcEEEEEEccc-------cH-HH---HH-hCCC------------
Confidence            358999999999999999999999999999986  59999998862       22 21   21 2111            


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         ..+   |+++++ ++|+++.++.| .+++++.+.|+++++
T Consensus        78 -------------------~~~---Pt~~~~-~~G~~~~~~~g-~~~~~l~~~l~~~~~  112 (113)
T 1ti3_A           78 -------------------EAM---PTFIFL-KDGKLVDKTVG-ADKDGLPTLVAKHAT  112 (113)
T ss_dssp             -------------------SST---TEEEEE-ETTEEEEEEEC-CCTTHHHHHHHHHHH
T ss_pred             -------------------Ccc---cEEEEE-eCCEEEEEEec-CCHHHHHHHHHHhhc
Confidence                               122   376776 79999999888 578899999998875

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.50  E-value=2.7e-14  Score=94.96  Aligned_cols=94  Identities=12%  Similarity=0.172  Sum_probs=68.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH---HHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND---QIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      ++ ++||+||++||++|+.+.|.++++.++++   +.++.|+++..     ....   +..+.++ +             
T Consensus        31 ~~-~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---v~~~~vd~~~~-----~~~~~~d~~~~l~~-~-------------   87 (135)
T 3emx_A           31 QG-DAILAVYSKTCPHCHRDWPQLIQASKEVD---VPIVMFIWGSL-----IGERELSAARLEMN-K-------------   87 (135)
T ss_dssp             TS-SEEEEEEETTCHHHHHHHHHHHHHHTTCC---SCEEEEEECTT-----CCHHHHHHHHHHHH-H-------------
T ss_pred             CC-cEEEEEECCcCHhhhHhChhHHHHHHHCC---CEEEEEECCCc-----hhhhhhhhhHHHHH-H-------------
Confidence            44 99999999999999999999999999885   88999988531     1111   1111111 1             


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                           +++...|++++++ +|+++.++.|..+.+.+.+.++++++.
T Consensus        88 ---------------------~~v~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~i~~~~~~  127 (135)
T 3emx_A           88 ---------------------AGVEGTPTLVFYK-EGRIVDKLVGATPWSLKVEKAREIYGG  127 (135)
T ss_dssp             ---------------------HTCCSSSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHC--
T ss_pred             ---------------------cCCceeCeEEEEc-CCEEEEEEeCCCCHHHHHHHHHHHhCC
Confidence                                 1233334766666 999999999999998899999988764

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.3e-14  Score=95.44  Aligned_cols=90  Identities=16%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+++++||+||++||++|+.+.|.++++.+++++.++.++.|+++.       ..    +.++ ++++..+         
T Consensus        24 ~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~----~~~~-~~~v~~~---------   82 (137)
T 2dj0_A           24 DKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGR-------YT----DVST-RYKVSTS---------   82 (137)
T ss_dssp             STTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTT-------CH----HHHH-HTTCCCC---------
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCcc-------CH----HHHH-HccCccc---------
Confidence            3567999999999999999999999999999987679999998762       22    2332 4444311         


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHH
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLE  160 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~  160 (170)
                                         ..+...|+++++ ++|+++.++.|..+.+++.
T Consensus        83 -------------------~~~~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~  113 (137)
T 2dj0_A           83 -------------------PLTKQLPTLILF-QGGKEAMRRPQIDKKGRAV  113 (137)
T ss_dssp             -------------------SSSSCSSEEEEE-SSSSEEEEESCBCSSSCBC
T ss_pred             -------------------CCcCCCCEEEEE-ECCEEEEEecCcCchHHHH
Confidence                               011122388888 7899999988876665443

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.49  E-value=2.5e-14  Score=102.89  Aligned_cols=91  Identities=20%  Similarity=0.183  Sum_probs=72.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+|++||+||++||++|+.+.|.++++.++++++ +.++.|+++.       ..+    .++ ++               
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d~-------~~~----l~~-~~---------------   80 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NPG----TAP-KY---------------   80 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CTT----TGG-GG---------------
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC-cEEEEEECCC-------CHH----HHH-Hc---------------
Confidence            5899999999999999999999999999999865 9999998862       111    111 21               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                         +|...|+++++ ++|+++.++.|..+.+++.+.|++++..
T Consensus        81 -------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~~  119 (222)
T 3dxb_A           81 -------------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLAG  119 (222)
T ss_dssp             -------------------TCCSBSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHSCC
T ss_pred             -------------------CCCcCCEEEEE-ECCeEEEEeccccChHHHHHHHHhhccc
Confidence                               22233387777 5899999999999999999999998853

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.49  E-value=7.2e-14  Score=91.78  Aligned_cols=105  Identities=8%  Similarity=-0.039  Sum_probs=73.1

Q ss_pred             eeeCCCCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc----CCcEEEEeecCCCCCCCCCChHHHHHH
Q 030881           16 SVKDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD----QGLEILAFPCNQFGEEEPGSNDQIADF   90 (170)
Q Consensus        16 ~l~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~v~~v~is~d~~~~~~~~~~~~~~~~   90 (170)
                      .+..+++..+...-. .++++||+||++||++|+...|.+.++.+++..    .++.++.|+++.       .    .+.
T Consensus        16 ~v~~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~-------~----~~l   84 (127)
T 3h79_A           16 RVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEK-------Y----PDV   84 (127)
T ss_dssp             CCEECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTT-------C----HHH
T ss_pred             ceEECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccc-------c----HhH
Confidence            344555554432222 489999999999999999999999999988752    248999998762       1    122


Q ss_pred             HHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE-EEeCCCCCchHHHHHHHHH
Q 030881           91 VCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV-DRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        91 ~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~-~~~~~~~~~~~l~~~l~~~  166 (170)
                      ++ +++                                  |...|+++++.+.+++. ..+.|..+.+++.+.|+++
T Consensus        85 ~~-~~~----------------------------------v~~~Pt~~~~~~g~~~~~~~~~G~~~~~~l~~~i~~~  126 (127)
T 3h79_A           85 IE-RMR----------------------------------VSGFPTMRYYTRIDKQEPFEYSGQRYLSLVDSFVFQN  126 (127)
T ss_dssp             HH-HTT----------------------------------CCSSSEEEEECSSCSSSCEECCSCCCHHHHHHHHHHH
T ss_pred             HH-hcC----------------------------------CccCCEEEEEeCCCCCCceEecCCccHHHHHHHHHhc
Confidence            22 322                                  22223888888776653 5677888888899888764

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.49  E-value=7.3e-14  Score=90.55  Aligned_cols=90  Identities=16%  Similarity=0.128  Sum_probs=62.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|++++|+||++||++|+...|.+.++.++++   ..++.++++.     ..+.++..++.+ +++              
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~---~~v~~~~~~~-----~~~~~~~~~~~~-~~~--------------   84 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK---AHIYFINSEE-----PSQLNDLQAFRS-RYG--------------   84 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC---CCCEEEETTC-----GGGHHHHHHHHH-HHT--------------
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC---CeEEEEECCC-----cCcHHHHHHHHH-HcC--------------
Confidence            57899999999999999999999999999875   3344555441     011123333332 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                                          +...|+++++ ++|+++.++.|..+.+++.+.|+
T Consensus        85 --------------------i~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~  117 (118)
T 1zma_A           85 --------------------IPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFAG  117 (118)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHHT
T ss_pred             --------------------CCCCCeEEEE-ECCEEEEEecCCCCHHHHHHHhh
Confidence                                2223388888 58999999999888877777664

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.48  E-value=6.3e-14  Score=90.96  Aligned_cols=91  Identities=16%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...+.+.++.+++++. +.++.|+++.       ..    +.++ +++              
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~v~~~~-------~~----~~~~-~~~--------------   81 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD-LTVAKLDVDT-------NP----ETAR-NFQ--------------   81 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH----HHHH-hcC--------------
Confidence            5799999999999999999999999999998754 9999998862       21    1222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          +...|+++++ ++|+++..+.|..+.+++.+.|++++..
T Consensus        82 --------------------i~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~~l~~~l~~  119 (121)
T 2i1u_A           82 --------------------VVSIPTLILF-KDGQPVKRIVGAKGKAALLRELSDVVPN  119 (121)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHTCSCCCC
T ss_pred             --------------------CCcCCEEEEE-ECCEEEEEecCCCCHHHHHHHHHHHHhh
Confidence                                2223386666 5999999999988888899988887753

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.48  E-value=1.4e-13  Score=87.79  Aligned_cols=89  Identities=17%  Similarity=0.201  Sum_probs=68.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .++++||+||++||++|+...|.+.++.+++.+.  ++.++.|+.+.       . .   +.++ +++            
T Consensus        20 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~---~l~~-~~~------------   75 (111)
T 3uvt_A           20 AEGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTA-------E-R---NICS-KYS------------   75 (111)
T ss_dssp             HSSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTT-------C-H---HHHH-HTT------------
T ss_pred             cCCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccc-------c-H---hHHH-hcC------------
Confidence            3789999999999999999999999999988644  68999998762       2 1   2222 322            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                            +...|+++++ ++|+++..+.|..+.+++.+.|++.
T Consensus        76 ----------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~  110 (111)
T 3uvt_A           76 ----------------------VRGYPTLLLF-RGGKKVSEHSGGRDLDSLHRFVLSQ  110 (111)
T ss_dssp             ----------------------CCSSSEEEEE-ETTEEEEEECSCCSHHHHHHHHHHH
T ss_pred             ----------------------CCcccEEEEE-eCCcEEEeccCCcCHHHHHHHHHhc
Confidence                                  2222376666 7899999999988998899888764

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.48  E-value=2.6e-14  Score=92.94  Aligned_cols=102  Identities=15%  Similarity=0.211  Sum_probs=73.9

Q ss_pred             eeCCCCCeecCCC-C--CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHh
Q 030881           17 VKDARGHEVDLST-Y--KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCT   93 (170)
Q Consensus        17 l~~~~g~~~~l~~-~--~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~   93 (170)
                      +.+.+|+..++.+ +  .|+++||+||++||++|+...|.++++.+++  .++.++.|+++.       ..    +.++ 
T Consensus         5 v~~~~g~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~--~~v~~~~vd~~~-------~~----~~~~-   70 (118)
T 2f51_A            5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEAN--KDVTFIKVDVDK-------NG----NAAD-   70 (118)
T ss_dssp             SEEECSCHHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHHHHHHHHHC--TTSEEEEEETTT-------CH----HHHH-
T ss_pred             ceEecCCHHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHC--CCeEEEEEECCC-------CH----HHHH-
Confidence            3455666655653 3  4899999999999999999999999999998  459999999862       21    2222 


Q ss_pred             hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECC---CCcEEEEeCCCCCchHHHHHHHHHh
Q 030881           94 RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK---NGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus        94 ~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~---~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      +++                                  +...|++++++.   +|+++.++.|.. ++++++.|++..
T Consensus        71 ~~~----------------------------------i~~~Pt~~~~~~~~~~G~~~~~~~G~~-~~~l~~~~~~~~  112 (118)
T 2f51_A           71 AYG----------------------------------VSSIPALFFVKKEGNEIKTLDQFVGAD-VSRIKADIEKFK  112 (118)
T ss_dssp             HTT----------------------------------CCSSSEEEEEEEETTEEEEEEEEESCC-HHHHHHHHHHHC
T ss_pred             hcC----------------------------------CCCCCEEEEEeCCCCcceEEEeecCCC-HHHHHHHHHHhh
Confidence            322                                  222338888865   499999988854 456888887654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.46  E-value=6.1e-14  Score=94.17  Aligned_cols=43  Identities=14%  Similarity=-0.042  Sum_probs=39.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++||+||++||++|+...|.+.++.+++++. +.++.|++|
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~-v~~~~vd~d   64 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDIT   64 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-eEEEEEccc
Confidence            4899999999999999999999999999999654 999999886

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.46  E-value=7.6e-14  Score=91.43  Aligned_cols=90  Identities=20%  Similarity=0.172  Sum_probs=65.6

Q ss_pred             CCcEEEEEEecCCCC--------------CChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           31 KGKVLLIVNVASKCG--------------MTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~--------------~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      .||++||+||++||+              +|+...|.++++.++++++ +.++.|++|.       ..    +..+ +  
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~-~~~~~vd~d~-------~~----~l~~-~--   84 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTAP-K--   84 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC--------CEEEEEETTS-------CT----TTGG-G--
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC-eEEEEEECCC-------CH----HHHH-H--
Confidence            589999999999999              9999999999999998764 9999998863       11    0111 1  


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                                      +++...|+++++ ++|+++.++.|..+.+++.+.|+++|+
T Consensus        85 --------------------------------~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  123 (123)
T 1oaz_A           85 --------------------------------YGIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  123 (123)
T ss_dssp             --------------------------------GTCCBSSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTCC
T ss_pred             --------------------------------cCCCccCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHhC
Confidence                                            123333498888 899999999998888889999887763

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.46  E-value=6.7e-14  Score=90.43  Aligned_cols=92  Identities=17%  Similarity=0.196  Sum_probs=69.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      ++++++|+||++||++|+...|.+.++.+.+++.  ++.++.|+.+.       ..    +.++ +              
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~-------~~----~~~~-~--------------   76 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------ES----DLAQ-Q--------------   76 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------CC----SSHH-H--------------
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCC-------CH----HHHH-H--------------
Confidence            6899999999999999999999999999999764  47888887642       11    1111 1              


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEE--EEeCCCCCchHHHHHHHHHhcC
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVV--DRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~--~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                               +           ++...|+++++ ++|+++  ..+.|..+.+++.+.|++++..
T Consensus        77 ---------~-----------~v~~~Pt~~~~-~~g~~~~~~~~~g~~~~~~l~~~l~~~~~~  118 (120)
T 1mek_A           77 ---------Y-----------GVRGYPTIKFF-RNGDTASPKEYTAGREADDIVNWLKKRTGP  118 (120)
T ss_dssp             ---------H-----------TCCSSSEEEEE-ESSCSSSCEECCCCSSHHHHHHHHHTTSCC
T ss_pred             ---------C-----------CCCcccEEEEE-eCCCcCCcccccCccCHHHHHHHHHhccCC
Confidence                     1           12223388888 688877  7888888899999999998864

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.44  E-value=6.1e-14  Score=91.30  Aligned_cols=91  Identities=12%  Similarity=0.004  Sum_probs=67.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.++++.+++.+ ++.++.|+++.       ..    +.++ +++              
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~-~~~--------------   72 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKG-KVRAGKVDCQA-------YP----QTCQ-KAG--------------   72 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CeEEEEEeCcC-------CH----HHHH-HcC--------------
Confidence            578999999999999999999999999999976 49999998862       21    2222 222              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC----CCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT----TSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~----~~~~~l~~~l~~~l~~  169 (170)
                                          +...|++++++++|.+ ..+.|.    .+.+++.+.|+++++.
T Consensus        73 --------------------v~~~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l~~  114 (122)
T 3aps_A           73 --------------------IKAYPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKLET  114 (122)
T ss_dssp             --------------------CCSSSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHHHC
T ss_pred             --------------------CCccceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHHHh
Confidence                                2223388999877763 334443    6888899999988753

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.44  E-value=7.3e-13  Score=87.81  Aligned_cols=87  Identities=11%  Similarity=0.111  Sum_probs=69.1

Q ss_pred             cEEEEEEecCCC--CCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           33 KVLLIVNVASKC--GMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        33 k~~lv~f~~~~C--~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +++||+|||+||  ++|+...|.|.++.++|.++ +.++.|++|           +-.+... +|++             
T Consensus        34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~-v~~~KVdvD-----------e~~~la~-~ygV-------------   87 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR-LVAAEVAAE-----------AERGLMA-RFGV-------------   87 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT-EEEEEECGG-----------GHHHHHH-HHTC-------------
T ss_pred             CcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC-cEEEEEECC-----------CCHHHHH-HcCC-------------
Confidence            499999999999  99999999999999999765 999999876           2223332 4332             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                        ..+   ||++++ +||+++.+..|..+.+++.+.|++++
T Consensus        88 ------------------~si---PTlilF-kdG~~v~~~vG~~~k~~l~~~l~~~l  122 (137)
T 2qsi_A           88 ------------------AVC---PSLAVV-QPERTLGVIAKIQDWSSYLAQIGAML  122 (137)
T ss_dssp             ------------------CSS---SEEEEE-ECCEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             ------------------ccC---CEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence                              122   275555 89999999999999999999998876

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=99.16  E-value=9.5e-15  Score=92.38  Aligned_cols=89  Identities=25%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|....+.++++.+++++ ++.++.|+.+.        .   .+.++ ++               
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~v~~~~--------~---~~~~~-~~---------------   69 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEG-KVKVVKVNVDE--------N---PNTAA-QY---------------   69 (106)
Confidence            579999999999999999999999999999875 48888887652        1   11111 11               


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                         ++...|+++++ ++|+++..+.|..+.+++.+.|+++|
T Consensus        70 -------------------~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l  106 (106)
T 2yj7_A           70 -------------------GIRSIPTLLLF-KNGQVVDRLVGAQPKEALKERIDKHL  106 (106)
Confidence                               11222387888 89999999888888888888887764

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.43  E-value=2.4e-13  Score=98.27  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=75.6

Q ss_pred             eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhh
Q 030881           17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTR   94 (170)
Q Consensus        17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~   94 (170)
                      +..+++..+.....+|++++|+||++||++|+...|.+.++.+++++.+  +.++.|+.+.       . .   +.++ +
T Consensus        17 v~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------~-~---~l~~-~   84 (241)
T 3idv_A           17 VLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATS-------A-S---VLAS-R   84 (241)
T ss_dssp             EEEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTT-------C-H---HHHH-H
T ss_pred             cEEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccC-------C-H---HHHH-h
Confidence            3344555444333478999999999999999999999999999998775  8899998752       1 1   2222 3


Q ss_pred             cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881           95 FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        95 ~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      +++                                  ...|++++++ +|+++ .+.|..+.+++.+.|.+.+.
T Consensus        85 ~~v----------------------------------~~~Pt~~~~~-~g~~~-~~~g~~~~~~l~~~i~~~~~  122 (241)
T 3idv_A           85 FDV----------------------------------SGYPTIKILK-KGQAV-DYEGSRTQEEIVAKVREVSQ  122 (241)
T ss_dssp             TTC----------------------------------CSSSEEEEEE-TTEEE-ECCSCSCHHHHHHHHHHHHS
T ss_pred             cCC----------------------------------CcCCEEEEEc-CCCcc-cccCcccHHHHHHHHhhccC
Confidence            222                                  2223878885 67766 47888899999999988764

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.43  E-value=7e-13  Score=88.22  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=71.4

Q ss_pred             CCcEEEEEEecCC--CCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASK--CGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .++++||+||++|  |++|+...|.|.++.++|.++.+.|+.|++|           +-.+... +|++           
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvD-----------e~~~lA~-~ygV-----------   89 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLE-----------QSEAIGD-RFGA-----------   89 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHH-----------HHHHHHH-HHTC-----------
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECC-----------CCHHHHH-HcCC-----------
Confidence            5678999999999  9999999999999999997644899999765           3333333 4332           


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          ..||   |++++ ++|+++.+..|..+.+++.+.|+++++
T Consensus        90 --------------------~sIP---TlilF-k~G~~v~~~~G~~~k~~l~~~i~~~l~  125 (140)
T 2qgv_A           90 --------------------FRFP---ATLVF-TGGNYRGVLNGIHPWAELINLMRGLVE  125 (140)
T ss_dssp             --------------------CSSS---EEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------------ccCC---EEEEE-ECCEEEEEEecCCCHHHHHHHHHHHhc
Confidence                                1233   75555 899999999999898999999998875

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.41  E-value=4.1e-14  Score=92.99  Aligned_cols=90  Identities=20%  Similarity=0.269  Sum_probs=67.9

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ..|+++||+||++||++|+...+.++++.++++  ++.++.|+++.       ..+    .++ +++             
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~v~~~~v~~~~-------~~~----~~~-~~~-------------   86 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--GAVFLKVDVDE-------LKE----VAE-KYN-------------   86 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--TBCCEECCTTT-------SGG----GHH-HHT-------------
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--CCEEEEEeccc-------hHH----HHH-HcC-------------
Confidence            358999999999999999999999999999986  59999998752       111    111 211             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                           +...|+++++ ++|+++.++.| .+.+++.+.|+++++.
T Consensus        87 ---------------------v~~~Pt~~~~-~~g~~~~~~~g-~~~~~l~~~l~~~~~~  123 (130)
T 1wmj_A           87 ---------------------VEAMPTFLFI-KDGAEADKVVG-ARKDDLQNTIVKHVGA  123 (130)
T ss_dssp             ---------------------CCSSCCCCBC-TTTTCCBCCCT-TCTTTHHHHHHHHTSS
T ss_pred             ---------------------CCccceEEEE-eCCeEEEEEeC-CCHHHHHHHHHHHHhc
Confidence                                 1222375555 89999988888 5788899999998863

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.39  E-value=1.6e-12  Score=79.03  Aligned_cols=83  Identities=14%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             EEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCch
Q 030881           34 VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHAS  113 (170)
Q Consensus        34 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~  113 (170)
                      ..|+.||++||++|....|.++++.+++++ ++.++.++++.       +.    +..+ +                   
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~-~-------------------   50 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGD-KIDVEKIDIMV-------DR----EKAI-E-------------------   50 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCS-SCCEEEECTTT-------CG----GGGG-G-------------------
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcC-CeEEEEEECCC-------CH----HHHH-h-------------------
Confidence            468999999999999999999999999975 49999998752       11    1111 1                   


Q ss_pred             hHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          114 PLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       114 ~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                     .++...|++++   +|++  ++.|..+.+++.+.|+++++
T Consensus        51 ---------------~~v~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~le   85 (85)
T 1nho_A           51 ---------------YGLMAVPAIAI---NGVV--RFVGAPSREELFEAINDEME   85 (85)
T ss_dssp             ---------------TCSSCSSEEEE---TTTE--EEECSSCCHHHHHHHHHHCC
T ss_pred             ---------------CCceeeCEEEE---CCEE--EEccCCCHHHHHHHHHHHhC
Confidence                           12223348666   8988  56677788999999998764

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.39  E-value=7.8e-13  Score=87.93  Aligned_cols=84  Identities=19%  Similarity=0.125  Sum_probs=63.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      +|+++||+||++||++|+...|.+.++.+++.  ++.++.|+++.       ..       + +                
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~--~v~~~~vd~~~-------~~-------~-~----------------   75 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP--ETKFVKAIVNS-------CI-------E-H----------------   75 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS--SEEEEEECCSS-------SC-------S-S----------------
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC--CcEEEEEEhhc-------Cc-------c-c----------------
Confidence            46899999999999999999999999999985  49999998762       10       0 1                


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC-------CchHHHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT-------SLLSLEHDIKKL  166 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~-------~~~~l~~~l~~~  166 (170)
                                        ++|...|+++++. +|+++.++.|..       ..+++++.|.+.
T Consensus        76 ------------------~~i~~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           76 ------------------YHDNCLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             ------------------CCSSCCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             ------------------CCCCCCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHc
Confidence                              1222334878885 899999887764       566677777654

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.38  E-value=2.1e-12  Score=78.47  Aligned_cols=83  Identities=17%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCc
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHA  112 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~  112 (170)
                      .++|+.||++||++|....|.++++.+++++ ++.++.|+.+.       +.    +..+ +                  
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~-~------------------   51 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPD-AVEVEYINVME-------NP----QKAM-E------------------   51 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSS-SEEEEEEESSS-------SC----CTTT-S------------------
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCC-ceEEEEEECCC-------CH----HHHH-H------------------
Confidence            5789999999999999999999999999874 49999998762       11    0000 1                  


Q ss_pred             hhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          113 SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                      .++...|++++   +|++  .+.|..+.+++.+.|+++|
T Consensus        52 ----------------~~v~~~Pt~~~---~G~~--~~~G~~~~~~l~~~l~~~l   85 (85)
T 1fo5_A           52 ----------------YGIMAVPTIVI---NGDV--EFIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             ----------------TTTCCSSEEEE---TTEE--ECCSSSSSHHHHHHHHHHC
T ss_pred             ----------------CCCcccCEEEE---CCEE--eeecCCCHHHHHHHHHHhC
Confidence                            12233348666   8988  6778778889999998764

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.37  E-value=2e-12  Score=86.72  Aligned_cols=89  Identities=10%  Similarity=0.110  Sum_probs=60.4

Q ss_pred             CcEEEEEEecCC--CCCChhhHHHHHHHHHHhccCCcE--EEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           32 GKVLLIVNVASK--CGMTNSNYIELSQLYDKYKDQGLE--ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        32 gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~~~v~--~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      ++.+||+||++|  |++|+...|.+.++.+++ + ++.  ++.|++|           +..+.+. +++           
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~-~v~~~~~~Vd~d-----------~~~~la~-~~~-----------   88 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P-QFDWQVAVADLE-----------QSEAIGD-RFN-----------   88 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T-TSCCEEEEECHH-----------HHHHHHH-TTT-----------
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c-ccceeEEEEECC-----------CCHHHHH-hcC-----------
Confidence            456788899877  999999999999999999 4 488  9999764           2223322 322           


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                             |...||++++ ++|+++.++.|..+.+++.+.|+++++.
T Consensus        89 -----------------------V~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~~  126 (142)
T 2es7_A           89 -----------------------VRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVDT  126 (142)
T ss_dssp             -----------------------CCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC-
T ss_pred             -----------------------CCcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhcc
Confidence                                   2233398899 8999999999988888999999988753

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.36  E-value=4.4e-12  Score=90.95  Aligned_cols=91  Identities=8%  Similarity=-0.011  Sum_probs=68.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc---CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD---QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .+++++|.||++||++|+...|.++++..++++   .++.++.|+.+.       . .   +.++ +++           
T Consensus       133 ~~~~~~v~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~-------~-~---~l~~-~~~-----------  189 (226)
T 1a8l_A          133 DQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------Y-P---EWAD-QYN-----------  189 (226)
T ss_dssp             CSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-------C-H---HHHH-HTT-----------
T ss_pred             CCCcEEEEEeCCCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEccc-------C-H---HHHH-hCC-----------
Confidence            345559999999999999999999999999973   259999998752       1 1   1222 322           


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                             |...|+++++ ++|+++..+.|..+.+++.+.|+++++
T Consensus       190 -----------------------v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l~  226 (226)
T 1a8l_A          190 -----------------------VMAVPKIVIQ-VNGEDRVEFEGAYPEKMFLEKLLSALS  226 (226)
T ss_dssp             -----------------------CCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             -----------------------CcccCeEEEE-eCCceeEEEcCCCCHHHHHHHHHHhhC
Confidence                                   2222385555 699999999998888889999988764

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.36  E-value=1.5e-12  Score=104.23  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=73.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .++++||+|||+||++|+.+.|.+.++++++++  .++.++.|+++.         ++..+.++ +++            
T Consensus        29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~---------d~~~~l~~-~~~------------   86 (519)
T 3t58_A           29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAE---------ETNSAVCR-EFN------------   86 (519)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTS---------GGGHHHHH-HTT------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCc---------cccHHHHH-HcC------------
Confidence            469999999999999999999999999999986  259999998852         12233333 322            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECC---CCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK---NGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~---~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                            |...|+++++++   +|+++..+.|..+.+++.+.|.+.++
T Consensus        87 ----------------------V~~~PTl~~f~~g~~~G~~~~~~~g~~~~~~L~~~l~~~l~  127 (519)
T 3t58_A           87 ----------------------IAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALE  127 (519)
T ss_dssp             ----------------------CCSBSEEEEECTTCCSCCCEEECCSSCCHHHHHHHHHHHHT
T ss_pred             ----------------------CcccCEEEEEcCcccCCCceeEecCCCCHHHHHHHHHHHHh
Confidence                                  222338899998   78888888888899999999998875

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.35  E-value=5.8e-14  Score=95.16  Aligned_cols=91  Identities=15%  Similarity=0.101  Sum_probs=58.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHH--HHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLY--DKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~--~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .||++||+|||+||++|+...|.+.+..  .++.+  ..|+.|.+|.      +..+ .    ..+              
T Consensus        43 ~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~--~~fv~V~vD~------e~~~-~----~~~--------------   95 (151)
T 3ph9_A           43 SKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ--NKFIMLNLMH------ETTD-K----NLS--------------   95 (151)
T ss_dssp             HTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH--HTCEEEEESS------CCSC-G----GGC--------------
T ss_pred             cCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh--cCeEEEEecC------Cchh-h----Hhh--------------
Confidence            5899999999999999999999987642  22222  3456666541      0100 0    001              


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-------CCch---HHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-------TSLL---SLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-------~~~~---~l~~~l~~~l~  168 (170)
                                          .++...|++++++++|+++.+..|.       ..++   .+.+.++++++
T Consensus        96 --------------------~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~  145 (151)
T 3ph9_A           96 --------------------PDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALR  145 (151)
T ss_dssp             --------------------TTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHS
T ss_pred             --------------------cCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHH
Confidence                                1112223999999999999998887       3344   46666666654

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.34  E-value=2.3e-12  Score=89.07  Aligned_cols=49  Identities=8%  Similarity=0.041  Sum_probs=36.0

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHH---HHHHHHHhccCCcEEEEeecC
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIE---LSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~---l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +..+...||+|||+||++||++|+.+.+.   ..++.+.+++ ++.++.|+.+
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~d   83 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDRE   83 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETT
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHh-cCceeeeCCc
Confidence            33344479999999999999999998873   2455555544 3888888765

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.33  E-value=3.7e-12  Score=92.63  Aligned_cols=92  Identities=16%  Similarity=0.140  Sum_probs=67.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .++++||+||++||++|+...|.+.++++++++  .++.++.|+++.         +...+.++ +++            
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~---------~~~~~l~~-~~~------------   86 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAE---------ETNSAVCR-DFN------------   86 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTS---------TTTHHHHH-HTT------------
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCc---------hhhHHHHH-HcC------------
Confidence            469999999999999999999999999999986  369999999852         11123332 322            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCC-----CcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-----GQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-----G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                            |...|+++++++.     |..+ .+.| .+.+.+.+.|.+++.
T Consensus        87 ----------------------v~~~Pt~~~~~~g~~~~~g~~~-~~~g-~~~~~l~~~i~~~l~  127 (244)
T 3q6o_A           87 ----------------------IPGFPTVRFFXAFTXNGSGAVF-PVAG-ADVQTLRERLIDALE  127 (244)
T ss_dssp             ----------------------CCSSSEEEEECTTCCSSSCEEC-CCTT-CCHHHHHHHHHHHHH
T ss_pred             ----------------------CCccCEEEEEeCCCcCCCCeeE-ecCC-CCHHHHHHHHHHHHH
Confidence                                  2223388888862     4444 4555 588889999988874

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1.7e-11  Score=91.90  Aligned_cols=93  Identities=9%  Similarity=0.095  Sum_probs=68.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.+.++.+++.+. +.++.|++|.      +.   ..+.++ ++++             
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~-~~~~~v~~d~------~~---~~~l~~-~~~I-------------   89 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV-VQVAAVNCDL------NK---NKALCA-KYDV-------------   89 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTS------TT---THHHHH-HTTC-------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC-cEEEEEEccC------cc---CHHHHH-hCCC-------------
Confidence            4789999999999999999999999999999765 8999998862      11   123332 4332             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCC----------------cEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG----------------QVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G----------------~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           ...|+++++++.+                .....|.|..+.+.+.+.|.+.+.
T Consensus        90 ---------------------~~~Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~  142 (298)
T 3ed3_A           90 ---------------------NGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIR  142 (298)
T ss_dssp             ---------------------CBSSEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCC
T ss_pred             ---------------------CccceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcc
Confidence                                 2223667776432                245668888899999999887764

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.27  E-value=9.8e-12  Score=79.37  Aligned_cols=87  Identities=11%  Similarity=0.285  Sum_probs=62.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+|+++||++|+...|.++++.++   .++.++.|.+|        ...++-..++++++              
T Consensus        23 ~~~~vvi~khatwCgpc~~~~~~~e~~~~~---~~v~~~~vdVd--------e~r~~Sn~IA~~~~--------------   77 (112)
T 3iv4_A           23 ENKYVFVLKHSETCPISANAYDQFNKFLYE---RDMDGYYLIVQ--------QERDLSDYIAKKTN--------------   77 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHH---HTCCEEEEEGG--------GGHHHHHHHHHHHT--------------
T ss_pred             cCCCEEEEEECCcCHhHHHHHHHHHHHhcc---CCceEEEEEee--------cCchhhHHHHHHhC--------------
Confidence            379999999999999999999999999885   34999999886        23333233333433              


Q ss_pred             CchhHHHHhHhccCCccCCcccc-CceeEEECCCCcEEEE-eCCCCCchHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQW-NFAKFLVDKNGQVVDR-YYPTTSLLSLEHDI  163 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~-~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l  163 (170)
                                          |.| .|+++++ +||++++. ..+..+.+.+.+.|
T Consensus        78 --------------------V~h~sPq~il~-k~G~~v~~~SH~~I~~~~l~~~~  111 (112)
T 3iv4_A           78 --------------------VKHESPQAFYF-VNGEMVWNRDHGDINVSSLAQAE  111 (112)
T ss_dssp             --------------------CCCCSSEEEEE-ETTEEEEEEEGGGCSHHHHHHHT
T ss_pred             --------------------CccCCCeEEEE-ECCEEEEEeeccccCHHHHHHhh
Confidence                                332 3476666 79999998 55556666666544

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.25  E-value=9.1e-12  Score=96.29  Aligned_cols=105  Identities=18%  Similarity=0.234  Sum_probs=74.3

Q ss_pred             eeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-----CCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           17 VKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-----QGLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        17 l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-----~~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      +.++++..+...--.++++||.||++||++|+...|.+.++++++++     .++.++.|+++.       .    .+.+
T Consensus         7 v~~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~-------~----~~l~   75 (382)
T 2r2j_A            7 ITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQ-------H----SDIA   75 (382)
T ss_dssp             -CBCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTT-------C----HHHH
T ss_pred             eEECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCc-------c----HHHH
Confidence            33445544432112579999999999999999999999999999853     249999998762       1    2233


Q ss_pred             HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE-eCCCCCchHHHHHHHHHhc
Q 030881           92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR-YYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~-~~~~~~~~~l~~~l~~~l~  168 (170)
                      + ++++                                  ...|+++++ ++|+++.+ +.|..+.+.+.+.|.+.+.
T Consensus        76 ~-~~~v----------------------------------~~~Pt~~~f-~~G~~~~~~~~G~~~~~~l~~~i~~~~~  117 (382)
T 2r2j_A           76 Q-RYRI----------------------------------SKYPTLKLF-RNGMMMKREYRGQRSVKALADYIRQQKS  117 (382)
T ss_dssp             H-HTTC----------------------------------CEESEEEEE-ETTEEEEEECCSCCSHHHHHHHHHHHHS
T ss_pred             H-hcCC----------------------------------CcCCEEEEE-eCCcEeeeeecCcchHHHHHHHHHHhcc
Confidence            2 4332                                  122376655 68988874 8898899999999988774

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.25  E-value=7.6e-11  Score=85.83  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=65.5

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc---CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD---QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI  105 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (170)
                      +++|+++|+.||++||++|+...|.++++..++++   .++.+..|+.+.       .+    +.+. +++         
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~-------~~----~~~~-~~~---------  193 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYE-------NP----DIAD-KYG---------  193 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTT-------CH----HHHH-HTT---------
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECcc-------CH----HHHH-HcC---------
Confidence            35688999999999999999999999999999842   469999998752       11    1121 222         


Q ss_pred             ecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                               |...|++++   +|+++  +.|..+.+++.+.|++.+.
T Consensus       194 -------------------------V~~vPt~~i---~G~~~--~~G~~~~~~l~~~l~~~~~  226 (243)
T 2hls_A          194 -------------------------VMSVPSIAI---NGYLV--FVGVPYEEDFLDYVKSAAE  226 (243)
T ss_dssp             -------------------------CCSSSEEEE---TTEEE--EESCCCHHHHHHHHHHHHT
T ss_pred             -------------------------CeeeCeEEE---CCEEE--EeCCCCHHHHHHHHHHHhh
Confidence                                     222238676   78876  5677888899999988874

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.25  E-value=1.4e-11  Score=89.70  Aligned_cols=42  Identities=10%  Similarity=0.016  Sum_probs=38.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +|+++||+||++||++|....|.|.+++.+|.+  +.|+.|+++
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~--v~f~kVd~d  173 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM--VKFCKIKAS  173 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT--SEEEEEEHH
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC--CEEEEEeCC
Confidence            489999999999999999999999999999964  999999753

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.24  E-value=2.1e-11  Score=88.05  Aligned_cols=90  Identities=13%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .+++++|+||++||++|+...|.+.++.+++.+++  +.++.|+.+.       . .   +.++ ++++           
T Consensus       146 ~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~-------~-~---~l~~-~~~v-----------  202 (241)
T 3idv_A          146 DADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATA-------E-T---DLAK-RFDV-----------  202 (241)
T ss_dssp             HCSEEEEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTT-------C-H---HHHH-HTTC-----------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCC-------C-H---HHHH-HcCC-----------
Confidence            57899999999999999999999999999997654  8999998752       1 1   2222 3222           


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                             ...|+++++. +|+.+. +.|..+.+++.+.|++.+.
T Consensus       203 -----------------------~~~Pt~~~~~-~g~~~~-~~g~~~~~~l~~~l~~~~~  237 (241)
T 3idv_A          203 -----------------------SGYPTLKIFR-KGRPYD-YNGPREKYGIVDYMIEQSG  237 (241)
T ss_dssp             -----------------------CSSSEEEEEE-TTEEEE-CCSCCSHHHHHHHHHHHTT
T ss_pred             -----------------------cccCEEEEEE-CCeEEE-ecCCCCHHHHHHHHHhhhC
Confidence                                   2223777775 587776 7888899999999988764

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.24  E-value=2.8e-11  Score=78.60  Aligned_cols=41  Identities=20%  Similarity=0.072  Sum_probs=37.7

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++++||+||++||++|+...|.|.++.+++.+  +.|+.|+.|
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~--v~f~kvd~d   63 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE--TKFVKAIVN   63 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT--SEEEEEEGG
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC--CEEEEEEhH
Confidence            45999999999999999999999999999964  999999875

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.23  E-value=4.7e-11  Score=91.22  Aligned_cols=89  Identities=9%  Similarity=0.055  Sum_probs=67.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHH-------HHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceE
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIE-------LSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFE  103 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~-------l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  103 (170)
                      .++++||+|||+||+ |+...|.       +.++.+.+++.++.++.|+++.       . .   +.++ ++++      
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~-------~-~---~l~~-~~~v------   87 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKK-------E-A---KLAK-KLGF------   87 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTT-------T-H---HHHH-HHTC------
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCC-------C-H---HHHH-hcCC------
Confidence            578999999999999 9888888       8889999887789999999862       1 1   2232 3222      


Q ss_pred             EeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          104 KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                                  ...||++++ ++|+ ...+.|..+.+.+.+.|++.+.
T Consensus        88 ----------------------------~~~Pt~~~~-~~g~-~~~~~G~~~~~~l~~~i~~~~~  122 (350)
T 1sji_A           88 ----------------------------DEEGSLYVL-KGDR-TIEFDGEFAADVLVEFLLDLIE  122 (350)
T ss_dssp             ----------------------------CSTTEEEEE-ETTE-EEEECSCCCHHHHHHHHHTTSS
T ss_pred             ----------------------------CccceEEEE-ECCc-EEEecCCCCHHHHHHHHHHhcC
Confidence                                        122377777 6788 4578888899999999887764

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.22  E-value=1.7e-11  Score=97.21  Aligned_cols=91  Identities=13%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .||++||+||++||++|+...|.+.++.+.+++. ++.++.|+.+.       +  +   ... +               
T Consensus       369 ~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~-------~--~---~~~-~---------------  420 (481)
T 3f8u_A          369 ENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATA-------N--D---VPS-P---------------  420 (481)
T ss_dssp             TTCEEEEEEECTTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTS-------S--C---CCT-T---------------
T ss_pred             CCCcEEEEEecCcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCc-------h--h---hHh-h---------------
Confidence            4899999999999999999999999999999875 68888887642       0  0   000 1               


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcE-EEEeCCCCCchHHHHHHHHHhc
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV-VDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i-~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                         .++...|++++++++|++ +..+.|..+.+++.+.|++.+.
T Consensus       421 -------------------~~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~~  461 (481)
T 3f8u_A          421 -------------------YEVRGFPTIYFSPANKKLNPKKYEGGRELSDFISYLQREAT  461 (481)
T ss_dssp             -------------------CCCCSSSEEEEECTTCTTSCEECCSCCSHHHHHHHHHHHCS
T ss_pred             -------------------CCCcccCEEEEEeCCCeEeeeEeCCCCCHHHHHHHHHHhcC
Confidence                               122333499999988874 6668888899999999988764

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.21  E-value=3.2e-11  Score=96.26  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|.||++||++|+...|.+.++.+++++.++.++.|+++.       .    .+.++ ++++             
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~-------~----~~l~~-~~~v-------------   84 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-------N----QDLCM-EHNI-------------   84 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT-------C----HHHHH-HTTC-------------
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCC-------C----HHHHH-hcCC-------------
Confidence            579999999999999999999999999999987779999999862       2    23333 4332             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcE--EEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV--VDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i--~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           ...|+++++. +|++  +..+.|..+.+.+.+.|.+.+.
T Consensus        85 ---------------------~~~Pt~~~~~-~g~~~~~~~~~G~~~~~~l~~~l~~~~~  122 (504)
T 2b5e_A           85 ---------------------PGFPSLKIFK-NSDVNNSIDYEGPRTAEAIVQFMIKQSQ  122 (504)
T ss_dssp             ---------------------CSSSEEEEEE-TTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             ---------------------CcCCEEEEEe-CCccccceeecCCCCHHHHHHHHHHhcC
Confidence                                 2223767774 5776  7788898899999999988764

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.20  E-value=2.9e-11  Score=86.60  Aligned_cols=41  Identities=10%  Similarity=0.037  Sum_probs=37.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      +|+++||+||++||++|+...|.+.++..++.  ++.|+.|++
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~--~v~f~~vd~  159 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP--MVKFCKIRA  159 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT--TSEEEEEEH
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEEEC
Confidence            46899999999999999999999999999985  499999974

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.18  E-value=5.4e-11  Score=94.38  Aligned_cols=90  Identities=14%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|+++||+||++||++|+...|.+.++++++++. +.++.|+++.        .   .+.++ ++++             
T Consensus        20 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~-v~~~~vd~~~--------~---~~l~~-~~~v-------------   73 (481)
T 3f8u_A           20 SAGLMLVEFFAPWCGHAKRLAPEYEAAATRLKGI-VPLAKVDCTA--------N---TNTCN-KYGV-------------   73 (481)
T ss_dssp             SSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CCEEEEETTT--------C---HHHHH-HTTC-------------
T ss_pred             CCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcCc-eEEEEEECCC--------C---HHHHH-hcCC-------------
Confidence            4499999999999999999999999999999877 9999998862        1   12232 4332             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           ...|+++++ ++|+++..+.|..+.+.+.+.|.+.+.
T Consensus        74 ---------------------~~~Ptl~~~-~~g~~~~~~~G~~~~~~l~~~~~~~~~  109 (481)
T 3f8u_A           74 ---------------------SGYPTLKIF-RDGEEAGAYDGPRTADGIVSHLKKQAG  109 (481)
T ss_dssp             ---------------------CEESEEEEE-ETTEEEEECCSCSSHHHHHHHHHHHTS
T ss_pred             ---------------------CCCCEEEEE-eCCceeeeecCccCHHHHHHHHHhhcc
Confidence                                 222376666 789888889999999999999988764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.18  E-value=1.6e-11  Score=79.26  Aligned_cols=94  Identities=10%  Similarity=0.049  Sum_probs=61.7

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      -+...+||+||++||++|+...+.+...++... .+.+.++.|+++.      +...        .....          
T Consensus        16 ~~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~------~~~~--------~la~~----------   71 (116)
T 3dml_A           16 DKAELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRD------PLPP--------GLELA----------   71 (116)
T ss_dssp             ---CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTS------CCCT--------TCBCS----------
T ss_pred             ccCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCC------CCch--------hHHHH----------
Confidence            355789999999999999998865544332211 1126677777652      0000        00000          


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          +.|...||+++++ +|+.+.+..|..+++.+.+.|++++.
T Consensus        72 --------------------~~V~g~PT~i~f~-~G~ev~Ri~G~~~~~~f~~~L~~~l~  110 (116)
T 3dml_A           72 --------------------RPVTFTPTFVLMA-GDVESGRLEGYPGEDFFWPMLARLIG  110 (116)
T ss_dssp             --------------------SCCCSSSEEEEEE-TTEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred             --------------------CCCCCCCEEEEEE-CCEEEeeecCCCCHHHHHHHHHHHHh
Confidence                                1233334999998 99999999999999999999998874

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=99.14  E-value=3.5e-10  Score=76.60  Aligned_cols=92  Identities=12%  Similarity=0.078  Sum_probs=63.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .||+++|+|+++||..|+.+...+   .++.+.+++ ++.++.++.+        + .+-.++.+ +|++          
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~--------~-~~~~~l~~-~y~v----------   99 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHD--------S-EEGQRYIQ-FYKL----------   99 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESS--------S-HHHHHHHH-HHTC----------
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecC--------C-HhHHHHHH-HcCC----------
Confidence            489999999999999999986544   334444332 3777777664        2 22334443 3222          


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                              ...|++++||++ |+.+....| .+++++.+.|++++.
T Consensus       100 ------------------------~~~P~~~fld~~~G~~l~~~~g-~~~~~fl~~L~~~l~  136 (153)
T 2dlx_A          100 ------------------------GDFPYVSILDPRTGQKLVEWHQ-LDVSSFLDQVTGFLG  136 (153)
T ss_dssp             ------------------------CSSSEEEEECTTTCCCCEEESS-CCHHHHHHHHHHHHH
T ss_pred             ------------------------CCCCEEEEEeCCCCcEeeecCC-CCHHHHHHHHHHHHH
Confidence                                    122388999998 877777666 799999999988874

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.14  E-value=7.5e-13  Score=84.50  Aligned_cols=39  Identities=13%  Similarity=0.054  Sum_probs=34.0

Q ss_pred             eecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhc
Q 030881           24 EVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYK   62 (170)
Q Consensus        24 ~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~   62 (170)
                      .+++++..|+.+||.||++||++|+.+.|.+.++.++++
T Consensus         4 ~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~   42 (106)
T 3kp8_A            4 AVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP   42 (106)
T ss_dssp             HHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC
T ss_pred             hhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC
Confidence            456777788999999999999999999999999886653

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.13  E-value=5.2e-10  Score=66.51  Aligned_cols=37  Identities=8%  Similarity=-0.021  Sum_probs=32.0

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP   72 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is   72 (170)
                      ..|.||++||++|+...|.++++.+++.. ++.++.|+
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~   38 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGI-DAEFEKIK   38 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTC-CEEEEEEC
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCC-ceEEEEec
Confidence            46899999999999999999999999864 38888774

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.11  E-value=2.2e-10  Score=95.80  Aligned_cols=93  Identities=13%  Similarity=0.093  Sum_probs=71.1

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEee
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKID  106 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d  106 (170)
                      ++++.|++++|.||++||++|....|.+++++++++++ +.++.|+++.       . .+   .++ .+++         
T Consensus       450 ~~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~-v~~~~vd~~~-------~-~~---~~~-~~~v---------  507 (780)
T 3apo_A          450 FPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ-LKVGTLDCTI-------H-EG---LCN-MYNI---------  507 (780)
T ss_dssp             SCTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------C-HH---HHH-HTTC---------
T ss_pred             HHHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-eEEEEEeCCC-------C-HH---HHH-HcCC---------
Confidence            34458899999999999999999999999999999764 9999998762       2 22   222 3222         


Q ss_pred             cCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          107 VNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                               ...|+++++ ++|++ +.+.|..+.+++.+.|++++.
T Consensus       508 -------------------------~~~Pt~~~~-~~g~~-~~~~g~~~~~~l~~fi~~~~~  542 (780)
T 3apo_A          508 -------------------------QAYPTTVVF-NQSSI-HEYEGHHSAEQILEFIEDLRN  542 (780)
T ss_dssp             -------------------------CSSSEEEEE-ETTEE-EEECSCSCHHHHHHHHHHHHS
T ss_pred             -------------------------CcCCeEEEE-cCCce-eeecCcccHHHHHHHHHhhcc
Confidence                                     112388888 45876 678888899999999988775

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.10  E-value=2.9e-10  Score=81.61  Aligned_cols=86  Identities=12%  Similarity=0.075  Sum_probs=62.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++|++||++||++|+...|.++++..++.  ++.++.|+.+.       . .   +.++ +++              
T Consensus       135 ~~~~~~v~F~a~wC~~C~~~~~~~~~~~~~~~--~v~~~~vd~~~-------~-~---~l~~-~~~--------------  186 (229)
T 2ywm_A          135 DIPIEIWVFVTTSCGYCPSAAVMAWDFALAND--YITSKVIDASE-------N-Q---DLAE-QFQ--------------  186 (229)
T ss_dssp             CSCEEEEEEECTTCTTHHHHHHHHHHHHHHCT--TEEEEEEEGGG-------C-H---HHHH-HTT--------------
T ss_pred             CCCeEEEEEECCCCcchHHHHHHHHHHHHHCC--CeEEEEEECCC-------C-H---HHHH-HcC--------------
Confidence            34566899999999999999999999999983  59999998752       1 1   1222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          |...|++++   +|++ .++.|..+.+++.+.|+++++
T Consensus       187 --------------------v~~~Pt~~~---~G~~-~~~~G~~~~~~l~~~l~~~~~  220 (229)
T 2ywm_A          187 --------------------VVGVPKIVI---NKGV-AEFVGAQPENAFLGYIMAVYE  220 (229)
T ss_dssp             --------------------CCSSSEEEE---GGGT-EEEESCCCHHHHHHHHHHHHH
T ss_pred             --------------------CcccCEEEE---CCEE-EEeeCCCCHHHHHHHHHHHhh
Confidence                                222237666   7884 557788888889999887764

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.09  E-value=9.1e-11  Score=76.51  Aligned_cols=46  Identities=11%  Similarity=0.081  Sum_probs=40.7

Q ss_pred             CCCCCcEEEEEEecC-------CCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           28 STYKGKVLLIVNVAS-------KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        28 ~~~~gk~~lv~f~~~-------~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+.+|++++|+||++       ||++|+...|.+.++.+++++ ++.++.|+++
T Consensus        20 ~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vd~~   72 (123)
T 1wou_A           20 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISE-GCVFIYCQVG   72 (123)
T ss_dssp             HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCT-TEEEEEEECC
T ss_pred             HHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCC-CcEEEEEECC
Confidence            334589999999999       999999999999999999865 5999999885

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.09  E-value=1.6e-10  Score=88.47  Aligned_cols=89  Identities=15%  Similarity=0.112  Sum_probs=67.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      .+++++|+||++||++|+...|.+.++.++++++ ++.++.|+.+.       ..      +. ++              
T Consensus       266 ~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~-------~~------~~-~~--------------  317 (361)
T 3uem_A          266 EKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTA-------NE------VE-AV--------------  317 (361)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTT-------CB------CS-SC--------------
T ss_pred             CCCcEEEEEecCcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCc-------cc------hh-hc--------------
Confidence            5899999999999999999999999999999875 58888887642       11      11 11              


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEEeCCCCCchHHHHHHHHHh
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          +|...|+++++.++ |+....+.|..+.+++.+.|++.-
T Consensus       318 --------------------~v~~~Pt~~~~~~~~~~~~~~~~G~~~~~~l~~~l~~~~  356 (361)
T 3uem_A          318 --------------------KVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGG  356 (361)
T ss_dssp             --------------------CCCSSSEEEEECSSSSCCCEECCSCSSHHHHHHHHTTTS
T ss_pred             --------------------CCcccCeEEEEECCCCcceeEecCCCCHHHHHHHHHhcC
Confidence                                22223498999655 677788888888888888887653

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.03  E-value=5.5e-10  Score=87.99  Aligned_cols=44  Identities=14%  Similarity=0.118  Sum_probs=39.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-------CcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-------GLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-------~v~~v~is~d   74 (170)
                      .+|++||+|||+||++|+.+.|.+.++++++++.       .+.++.|+++
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d   91 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCA   91 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECC
Confidence            4489999999999999999999999999999743       2999999986

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.03  E-value=5.8e-10  Score=88.99  Aligned_cols=89  Identities=21%  Similarity=0.117  Sum_probs=66.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhc-c-CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-D-QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~-~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .++++||+||++||++|+...|.+.++.++++ . .++.++.++.+.       +          . ...          
T Consensus       375 ~~k~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~-------~----------~-~~~----------  426 (504)
T 2b5e_A          375 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTE-------N----------D-VRG----------  426 (504)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGG-------C----------C-CSS----------
T ss_pred             CCCCEEEEEECCCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCc-------c----------c-ccc----------
Confidence            47999999999999999999999999999987 2 258888876531       0          0 000          


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE--EEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV--VDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i--~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          ..|...||++++ ++|+.  +..+.|..+.+++.+.|++.+.
T Consensus       427 --------------------~~v~~~Pt~~~~-~~G~~~~~~~~~G~~~~~~l~~~i~~~~~  467 (504)
T 2b5e_A          427 --------------------VVIEGYPTIVLY-PGGKKSESVVYQGSRSLDSLFDFIKENGH  467 (504)
T ss_dssp             --------------------CCCSSSSEEEEE-CCTTSCCCCBCCSCCCHHHHHHHHHHHCT
T ss_pred             --------------------CCceecCeEEEE-eCCceecceEecCCCCHHHHHHHHHhcCC
Confidence                                012223387888 78876  6668888888999999988764

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=99.02  E-value=2.6e-10  Score=78.67  Aligned_cols=50  Identities=14%  Similarity=0.163  Sum_probs=40.9

Q ss_pred             CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           22 GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        22 g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      +....+.+..++++|+.||..|||+|....+.+.++.+++.+  +.++...+
T Consensus        12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~--v~~~~~~~   61 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN--VRLVYREW   61 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--EEEEEEEC
T ss_pred             CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC--EEEEEEeC
Confidence            444556777899999999999999999999999999998765  55555554

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.02  E-value=1.7e-10  Score=96.50  Aligned_cols=91  Identities=11%  Similarity=-0.029  Sum_probs=68.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .|+++||+||++||++|+...|.+.++.+++++ ++.++.|+++.       . ..   .++ ++++             
T Consensus       674 ~~~~v~v~F~a~wC~~C~~~~p~~~~la~~~~~-~~~~~~vd~~~-------~-~~---~~~-~~~v-------------  727 (780)
T 3apo_A          674 GKTHWVVDFYAPWSGPSQNFAPEFELLARMIKG-KVRAGKVDCQA-------Y-PQ---TCQ-KAGI-------------  727 (780)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TCEEEEEETTT-------C-HH---HHH-HTTC-------------
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CceEEEEECCC-------C-HH---HHH-hcCC-------------
Confidence            578999999999999999999999999999976 49999998762       1 11   222 3222             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC----CCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP----TTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~----~~~~~~l~~~l~~~l~~  169 (170)
                                           ...|+++++ ++|+++.++.|    ..+.+++.+.|++++++
T Consensus       728 ---------------------~~~Pt~~~~-~~g~~~~~~~G~~~g~~~~~~l~~~l~~~l~~  768 (780)
T 3apo_A          728 ---------------------KAYPSVKLY-QYERAKKSIWEEQINSRDAKTIAALIYGKLET  768 (780)
T ss_dssp             ---------------------CSSSEEEEE-EEETTTTEEEEEEECCCCHHHHHHHHHHHTTC
T ss_pred             ---------------------CcCCEEEEE-cCCCccccccCcccCCcCHHHHHHHHHHHHHH
Confidence                                 222387888 78887765555    46888899999988853

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.98  E-value=3.4e-09  Score=81.51  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             CCcEEEEEEecCCCCCChhhH------HHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEE
Q 030881           31 KGKVLLIVNVASKCGMTNSNY------IELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK  104 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~------~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  104 (170)
                      .++++||.|||+||++|...-      |.++++...+++.++.++.|+++.       . .   +.++ ++++       
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~-------~-~---~l~~-~~~V-------   89 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK-------D-A---AVAK-KLGL-------   89 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTT-------T-H---HHHH-HHTC-------
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcc-------c-H---HHHH-HcCC-------
Confidence            478999999999999974332      578889988887779999998862       1 2   2332 4332       


Q ss_pred             eecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          105 IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       105 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                                 ...||++++. +|+++ .+.|..+.+.+.+.|.+.+.
T Consensus        90 ---------------------------~~~PTl~~f~-~G~~~-~y~G~~~~~~i~~~i~~~~~  124 (367)
T 3us3_A           90 ---------------------------TEEDSIYVFK-EDEVI-EYDGEFSADTLVEFLLDVLE  124 (367)
T ss_dssp             ---------------------------CSTTEEEEEE-TTEEE-ECCSCCSHHHHHHHHHHHHS
T ss_pred             ---------------------------CcCceEEEEE-CCcEE-EeCCCCCHHHHHHHHHHhcC
Confidence                                       1122766665 68775 68888899999999988764

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=98.87  E-value=7.3e-09  Score=71.67  Aligned_cols=44  Identities=9%  Similarity=0.068  Sum_probs=38.2

Q ss_pred             CCcEEEEEEec-------CCCCCChhhHHHHHHHHHHhcc----CCcEEEEeecC
Q 030881           31 KGKVLLIVNVA-------SKCGMTNSNYIELSQLYDKYKD----QGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~-------~~C~~C~~~~~~l~~~~~~~~~----~~v~~v~is~d   74 (170)
                      ++.++||.|||       .||++|+...|.+.++.+++..    ..+.|..|++|
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d   90 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVN   90 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETT
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECc
Confidence            46799999999       4999999999999999999971    23999999886

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.86  E-value=3.1e-09  Score=74.51  Aligned_cols=43  Identities=12%  Similarity=0.112  Sum_probs=39.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++|+.||..|||+|....+.+.++.+++.+ ++.+..+.++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQ-DVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCC-CeEEEEEecc
Confidence            589999999999999999999999999999876 4888888875

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.86  E-value=4.7e-09  Score=69.26  Aligned_cols=92  Identities=7%  Similarity=0.040  Sum_probs=66.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+.++++.||++ |++|....|.|.+++++|+++ +.|+.++.|.       .+ +   .+ +++++.            
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk-~~f~~vd~d~-------~~-~---~a-~~~gi~------------   75 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV-INFGTIDAKA-------FG-A---HA-GNLNLK------------   75 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT-SEEEEECTTT-------TG-G---GT-TTTTCC------------
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe-EEEEEEchHH-------hH-H---HH-HHcCCC------------
Confidence            457999999999 899999999999999999876 9999998762       11 1   11 132221            


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECC-CCcEEEEeC--CCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYY--PTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i~~~~~--~~~~~~~l~~~l~~~l~~  169 (170)
                                 .      ..+|   ++++++. +|+. +...  |..+.+.+.+.|++++.+
T Consensus        76 -----------~------~~iP---tl~i~~~~~g~~-~~~~~~g~~~~~~l~~fi~~~l~G  116 (133)
T 2djk_A           76 -----------T------DKFP---AFAIQEVAKNQK-FPFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             -----------S------SSSS---EEEEECTTTCCB-CCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             -----------c------ccCC---EEEEEecCcCcc-cCCCCccccCHHHHHHHHHHHHcC
Confidence                       0      1133   8788874 5776 5654  888888999999988754

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.79  E-value=1.6e-09  Score=69.64  Aligned_cols=38  Identities=13%  Similarity=0.170  Sum_probs=28.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++++++ ||++||++|+...+.|+++..+     +.++.|+.+
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-----~~~v~v~~~   55 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS-----YKVVELDEL   55 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC-----CEEEEGGGS
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC-----eEEEEccCC
Confidence            4566666 9999999999999988887433     456666543

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.78  E-value=4.2e-09  Score=73.64  Aligned_cols=43  Identities=12%  Similarity=0.141  Sum_probs=38.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++|+.||..|||+|....+.+.++.+++.+ ++.+.-+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPA-DVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCT-TEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCC-CeEEEEEehh
Confidence            689999999999999999999999999999877 5888777653

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.73  E-value=8.7e-09  Score=73.56  Aligned_cols=45  Identities=11%  Similarity=0.158  Sum_probs=36.2

Q ss_pred             cCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           26 DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        26 ~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+...+|+++|+.||++|||+|+...+.+.++.+.    ++.++.+.+.
T Consensus        80 ~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~~----~v~v~~~~~p  124 (216)
T 1eej_A           80 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAFP  124 (216)
T ss_dssp             EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEECC
T ss_pred             eecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHhC----CcEEEEEECC
Confidence            34445689999999999999999999999988652    5777777653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.73  E-value=1.3e-08  Score=62.25  Aligned_cols=75  Identities=9%  Similarity=0.044  Sum_probs=50.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhH
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPL  115 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~  115 (170)
                      |+.||++||++|....+.|.++..++      +..|++|.       +++ +   .+ +++..                 
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~------~~~vdid~-------~~~-l---~~-~~g~~-----------------   47 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA------FFSVFIDD-------DAA-L---ES-AYGLR-----------------   47 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC------EEEEECTT-------CHH-H---HH-HHTTT-----------------
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh------eEEEECCC-------CHH-H---HH-HhCCC-----------------
Confidence            78899999999999999887765442      45677652       232 2   21 32322                 


Q ss_pred             HHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          116 YKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       116 ~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                     ||   ++++  .+|+.+.   |..+.+++.+.|++.+.
T Consensus        48 ---------------vP---tl~~--~~G~~v~---g~~~~~~L~~~l~~~~~   77 (87)
T 1ttz_A           48 ---------------VP---VLRD--PMGRELD---WPFDAPRLRAWLDAAPH   77 (87)
T ss_dssp             ---------------CS---EEEC--TTCCEEE---SCCCHHHHHHHHHTCC-
T ss_pred             ---------------cC---eEEE--ECCEEEe---CCCCHHHHHHHHHHHHH
Confidence                           22   5444  6788875   67788889999987664

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.72  E-value=2.6e-08  Score=69.69  Aligned_cols=42  Identities=12%  Similarity=-0.020  Sum_probs=37.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .++++|++||..|||+|....+.|.++.++++. .+.+..+.+
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   62 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPS-DAYLRTEHV   62 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSCT-TEEEEEEEC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCCC-ceEEEEecc
Confidence            579999999999999999999999999999865 488877765

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.70  E-value=1.2e-07  Score=67.66  Aligned_cols=44  Identities=18%  Similarity=0.142  Sum_probs=36.7

Q ss_pred             CCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           29 TYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        29 ~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ...++++|++||++ ||++|....|.+.++.+..  .++.++.|+++
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~~--~~v~~~~vd~~   63 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT--DKLSYEIVDFD   63 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC--TTEEEEEEETT
T ss_pred             hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhhC--CceEEEEEeCC
Confidence            34567889999999 9999999999999988652  24999999875

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.63  E-value=1.1e-07  Score=60.34  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=33.9

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ...|+.||++||++|....+.|.++.+++   ++.+..|+++
T Consensus        29 m~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~i~~~~vDId   67 (107)
T 2fgx_A           29 PRKLVVYGREGCHLCEEMIASLRVLQKKS---WFELEVINID   67 (107)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHHHHHHS---CCCCEEEETT
T ss_pred             ccEEEEEeCCCChhHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence            36799999999999999999999998885   4788888876

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.53  E-value=3.2e-07  Score=65.63  Aligned_cols=91  Identities=9%  Similarity=0.073  Sum_probs=60.9

Q ss_pred             CCCcEEEEEE----ecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEE
Q 030881           30 YKGKVLLIVN----VASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK  104 (170)
Q Consensus        30 ~~gk~~lv~f----~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  104 (170)
                      ..+.++|+.|    |++||++|...+|.+.++++++.+ ..+.+..|+++.        .   .+.++ ++++       
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~~v-------   79 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFT--------H---KEETE-KYGV-------   79 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTT--------C---HHHHH-HTTC-------
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcc--------c---HHHHH-HcCC-------
Confidence            3445566666    588899999999999999888843 248998987652        1   23333 4333       


Q ss_pred             eecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          105 IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       105 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                                 ...|++.++. +|.....+.|....+++.+.+..++
T Consensus        80 ---------------------------~~~Ptl~~~~-~~~~~~~~~G~~~~~~l~~~~~~~~  114 (229)
T 2ywm_A           80 ---------------------------DRVPTIVIEG-DKDYGIRYIGLPAGLEFTTLINGIF  114 (229)
T ss_dssp             ---------------------------CBSSEEEEES-SSCCCEEEESCCCTTHHHHHHHHHH
T ss_pred             ---------------------------CcCcEEEEEC-CCcccceecCCccHHHHHHHHHHHH
Confidence                                       2223767775 5666666777777788888777654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.52  E-value=1e-07  Score=59.76  Aligned_cols=39  Identities=8%  Similarity=0.105  Sum_probs=31.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ...+.|+.|+++||++|....+.|.++.     .++.+..|+++
T Consensus        14 ~~~~~v~~f~~~~C~~C~~~~~~L~~l~-----~~i~~~~vdi~   52 (100)
T 1wjk_A           14 RALPVLTLFTKAPCPLCDEAKEVLQPYK-----DRFILQEVDIT   52 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTS-----SSSEEEEEETT
T ss_pred             CCCCEEEEEeCCCCcchHHHHHHHHHhh-----hCCeEEEEECC
Confidence            3567889999999999999888877543     23888888875

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.50  E-value=6.3e-07  Score=71.86  Aligned_cols=42  Identities=10%  Similarity=0.003  Sum_probs=37.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++..++.||++||++|+...|.++++..++.  ++.+..|+.+
T Consensus       116 ~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~--~v~~~~vd~~  157 (521)
T 1hyu_A          116 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNP--RIKHTAIDGG  157 (521)
T ss_dssp             CSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT--TEEEEEEETT
T ss_pred             CCCcceEEEECCCCcCcHHHHHHHHHHHhHcC--ceEEEEEech
Confidence            46788999999999999999999999998875  4999999875

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.47  E-value=1.9e-07  Score=65.09  Aligned_cols=42  Identities=12%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .++++|+.||..+||+|....+.+.++.+++.+ .+.+..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~-~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQAK-DVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSCT-TEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcCC-ceEEEEeCc
Confidence            578899999999999999999999999999865 477777765

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.44  E-value=1.4e-07  Score=68.37  Aligned_cols=47  Identities=9%  Similarity=0.089  Sum_probs=36.4

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.+..-.++.+|+.|+..|||+|+...+.+.++.+.   .++.+..+.+.
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~---g~v~v~~~~~p  136 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS---GKVQLRTLLVG  136 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT---TSEEEEEEECC
T ss_pred             ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC---CcEEEEEEECC
Confidence            334444678999999999999999999999987775   24777766653

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.39  E-value=2.6e-07  Score=64.72  Aligned_cols=43  Identities=19%  Similarity=0.109  Sum_probs=38.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++|+.|+..|||+|....+.+.++.+++.+ .+.+.-+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~-~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKD-DMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCT-TEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCC-CeEEEEecCC
Confidence            479999999999999999999999999999887 4888888775

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.38  E-value=2.3e-06  Score=62.20  Aligned_cols=40  Identities=5%  Similarity=-0.066  Sum_probs=35.0

Q ss_pred             CCcEEEEEEe--cCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecC
Q 030881           31 KGKVLLIVNV--ASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~--~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d   74 (170)
                      .++++||.||  |+||+    ..|.+.++.+++.+  ..+.|..|+++
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d   75 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVK   75 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECC
Confidence            4689999999  99998    89999999999964  35999999986

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.34  E-value=1.3e-06  Score=63.20  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=34.7

Q ss_pred             CCcEEEEEEec--CCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecC
Q 030881           31 KGKVLLIVNVA--SKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~--~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d   74 (170)
                      .++++||.||+  +||+    ..|.+.++.+.+.+ .++.|..|++|
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~~~v~~akVDvd   63 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASSDDLLVAEVGIS   63 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTCTTEEEEEECCC
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCCCCeEEEEEeCC
Confidence            46899999999  9998    88999999999974 35999999875

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.30  E-value=7.4e-06  Score=56.06  Aligned_cols=50  Identities=12%  Similarity=0.172  Sum_probs=41.0

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecC
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCN   74 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d   74 (170)
                      +.+....++++|+.|+..+||+|....+.+.++.+++.+. .+.++...+.
T Consensus        20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            4566667899999999999999999999999999888322 3888877764

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.25  E-value=1.3e-06  Score=62.09  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=31.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .++++|+.||..|||+|+...+.+.++.+.    ++.+..+.+
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~~----~v~v~~~~~  123 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYNDL----GITVRYLAF  123 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEEC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHhC----CcEEEEEEC
Confidence            468999999999999999999999886542    477766554

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.22  E-value=4.5e-07  Score=54.58  Aligned_cols=38  Identities=8%  Similarity=-0.017  Sum_probs=32.4

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|+.|+++|||+|....+.|.++..+++  ++.+..++++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~vdi~   39 (85)
T 1ego_A            2 QTVIFGRSGCPYCVRAKDLAEKLSNERD--DFQYQYVDIR   39 (85)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHHHS--SCEEEEECHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHhcCC--CceEEEEecc
Confidence            3678999999999999999999988864  4888888764

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.21  E-value=7e-06  Score=62.53  Aligned_cols=93  Identities=6%  Similarity=0.079  Sum_probs=63.0

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCc
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHA  112 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~  112 (170)
                      +.+++.|++.||++|....+.+.+++++++++ +.++.|+.+.         .+....++ .+++.-             
T Consensus       136 ~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~-i~f~~vd~~~---------~~~~~~~~-~fgi~~-------------  191 (361)
T 3uem_A          136 KTHILLFLPKSVSDYDGKLSNFKTAAESFKGK-ILFIFIDSDH---------TDNQRILE-FFGLKK-------------  191 (361)
T ss_dssp             CEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT-CEEEEECTTS---------GGGHHHHH-HTTCCT-------------
T ss_pred             CcEEEEEEeCCchhHHHHHHHHHHHHHHccCc-eEEEEecCCh---------HHHHHHHH-HcCCCc-------------
Confidence            57889999999999999999999999999876 8999987641         11223332 444320             


Q ss_pred             hhHHHHhHhccCCccCCccccCceeEEECCCCc-EEEEe-CCCCCchHHHHHHHHHhc
Q 030881          113 SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ-VVDRY-YPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~-i~~~~-~~~~~~~~l~~~l~~~l~  168 (170)
                                      ..+|   ++.+++.++. ..+.. .+..+.+.+.+.++..++
T Consensus       192 ----------------~~~P---~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~  230 (361)
T 3uem_A          192 ----------------EECP---AVRLITLEEEMTKYKPESEELTAERITEFCHRFLE  230 (361)
T ss_dssp             ----------------TTCS---EEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHT
T ss_pred             ----------------cCCc---cEEEEEcCCcccccCCCccccCHHHHHHHHHHHhc
Confidence                            1122   6667765333 23322 256788889999988775

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=98.20  E-value=2.2e-06  Score=59.86  Aligned_cols=130  Identities=10%  Similarity=0.004  Sum_probs=80.5

Q ss_pred             ccCCccccc--cee--eC-----CC----C--CeecCCCC--CCcEEEEEEe-cCCCCCChh-hHHHHHHHHHHh-ccCC
Q 030881            6 IQNPESIFD--LSV--KD-----AR----G--HEVDLSTY--KGKVLLIVNV-ASKCGMTNS-NYIELSQLYDKY-KDQG   65 (170)
Q Consensus         6 ~~~g~~~p~--f~l--~~-----~~----g--~~~~l~~~--~gk~~lv~f~-~~~C~~C~~-~~~~l~~~~~~~-~~~~   65 (170)
                      ..+|+++|.  +++  ..     .+    |  .++++++.  +||.|||++. +.+.|.|.. .+|.+.+.++++ +.+|
T Consensus        26 ~~v~~~~P~gdv~f~yip~~~~~~~~~~c~~P~~v~ls~~~~k~KkVVLf~vPGAFTPtCS~~hlPgf~~~~d~~~k~kG  105 (199)
T 4h86_A           26 DLVNKKFPAGDYKFQYIAISQSDADSESCKMPQTVEWSKLISENKKVIITGAPAAFSPTCTVSHIPGYINYLDELVKEKE  105 (199)
T ss_dssp             TTTTSBCCCTTCEEEECCCCSSSTTSGGGTSCEEEEHHHHHHHCSEEEEEECSCTTCHHHHHTTHHHHHHHHHHHHHHSC
T ss_pred             HHhCCCCCCCCceEEEecCCccccccccCCCCeeeEHHHHhcCCCeEEEEEeCCCcCCcCChhhChHHHHHHHHHHHhcC
Confidence            458889995  332  21     11    3  24677774  7887777766 789999986 599999888875 6778


Q ss_pred             c-EEEEeecCCCCCCCCCChHHHHHHHHhhcCC----CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEE
Q 030881           66 L-EILAFPCNQFGEEEPGSNDQIADFVCTRFKS----EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLV  140 (170)
Q Consensus        66 v-~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~----~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~li  140 (170)
                      + +++.|++|        ++-.+..|.+ ..+.    .++++  .|.++..... ++.....   .. .+....-..+||
T Consensus       106 vd~I~ciSVN--------D~FVm~AW~k-~~~~~~~~~i~~l--aD~~~eftka-lGl~~~~---~~-gg~RS~Rya~IV  169 (199)
T 4h86_A          106 VDQVIVVTVD--------NPFANQAWAK-SLGVKDTTHIKFA--SDPGCAFTKS-IGFELAV---GD-GVYWSGRWAMVV  169 (199)
T ss_dssp             CCEEEEEESS--------CHHHHHHHHH-HTTCCCCSSEEEE--ECGGGHHHHH-TTCEEEE---ET-TEEEECSEEEEE
T ss_pred             CcEEEEEEcC--------CHHHHHHHHH-Hhccccccccccc--CCcchHHHHh-cCceeec---CC-CcceeeEEEEEE
Confidence            7 78888987        6778888876 4343    35555  5544432221 1111110   01 122223255788


Q ss_pred             CCCCcEEEEeCC
Q 030881          141 DKNGQVVDRYYP  152 (170)
Q Consensus       141 d~~G~i~~~~~~  152 (170)
                      | ||+|.+.+..
T Consensus       170 d-DGvV~~~~vE  180 (199)
T 4h86_A          170 E-NGIVTYAAKE  180 (199)
T ss_dssp             E-TTEEEEEEEC
T ss_pred             E-CCEEEEEEEe
Confidence            7 8999998653

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=98.00  E-value=7.7e-05  Score=45.80  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..+|||+|...-..|.+       +|+.+..++++
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~-------~gi~y~~idi~   37 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA-------NRIAYDEVDIE   37 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEcCCCCHhHHHHHHHHHh-------cCCceEEEEcC
Confidence            566788999999987765543       56778888776

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.99  E-value=1.6e-06  Score=64.45  Aligned_cols=37  Identities=14%  Similarity=0.062  Sum_probs=29.1

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHh
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY   61 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~   61 (170)
                      ..+++.-++..++.||++||++|+...|.+.++.+++
T Consensus       190 ~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l  226 (291)
T 3kp9_A          190 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV  226 (291)
T ss_dssp             HHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS
T ss_pred             HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc
Confidence            4455544455689999999999999999999987654

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.94  E-value=1e-06  Score=61.96  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=42.6

Q ss_pred             CCCee-cCCC-CCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881           21 RGHEV-DLST-YKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        21 ~g~~~-~l~~-~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|+.+ .+.. ..++++||.||+.|||+|....|.+   .++.+++++ ++.+..++++
T Consensus       100 ~g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~-~v~~~~~~v~  157 (197)
T 1un2_A          100 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (197)
T ss_dssp             BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCC-CCEEEEeccC
Confidence            45432 3443 3578999999999999999999998   999999875 4899999886

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.91  E-value=3.6e-05  Score=55.66  Aligned_cols=43  Identities=12%  Similarity=0.152  Sum_probs=35.1

Q ss_pred             CcEEEEEEecCC--CCCChhhHHHHHHHHHHhcc-CC---cEEEEeecC
Q 030881           32 GKVLLIVNVASK--CGMTNSNYIELSQLYDKYKD-QG---LEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~--C~~C~~~~~~l~~~~~~~~~-~~---v~~v~is~d   74 (170)
                      +++++|.||+.|  |++|....+.+.++.+.+.. +|   +.|+.++.+
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d   73 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRE   73 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETT
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCC
Confidence            478999999999  99999999999999988532 22   778888765

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=97.88  E-value=4.6e-06  Score=49.66  Aligned_cols=36  Identities=8%  Similarity=0.015  Sum_probs=27.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.||++||++|....+.+.++.+++   ++.+..+.++
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~~~~~~~~v~   39 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS---KYTVEIVHLG   39 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT---TEEEEEEETT
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc---CCeEEEEEec
Confidence            67789999999999999999887664   3445555544

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.79  E-value=0.00029  Score=48.55  Aligned_cols=110  Identities=12%  Similarity=0.104  Sum_probs=64.2

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI  105 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (170)
                      .-.+|+++|++.++||..|......+   .++.+-+++ ++.+.+.+++        +.+....+.. ..+..+      
T Consensus        52 k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~-nfV~w~~dv~--------~~e~~~~~~~-~~~~~~------  115 (178)
T 2ec4_A           52 ARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQ-NFITWAWDLT--------KDSNRARFLT-MCNRHF------  115 (178)
T ss_dssp             TTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHH-TEEEEEEECC--------SHHHHHHHHH-HHHHHT------
T ss_pred             hhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHc-CEEEEEEeCC--------Cchhhhhhhh-hhhhhh------
Confidence            44689999999999999988766443   223333332 4888888774        3333222221 100000      


Q ss_pred             ecCCCCchh-HHHHhHhccCCccCCccccCceeEEECCCC---cEEEEeCCCCCchHHHHHHHHHhc
Q 030881          106 DVNGEHASP-LYKLLKSGKWGIFGDDIQWNFAKFLVDKNG---QVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       106 d~~~~~~~~-~~~~~~~~~~~~~~~~i~~~p~~~lid~~G---~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                         +..... +..+           .+...|+..+|++.|   +++.+..|..+++++.+.|.+.+.
T Consensus       116 ---g~~~a~~~~~~-----------~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~~ll~~L~~~~e  168 (178)
T 2ec4_A          116 ---GSVVAQTIRTQ-----------KTDQFPLFLIIMGKRSSNEVLNVIQGNTTVDELMMRLMAAME  168 (178)
T ss_dssp             ---CHHHHHHHHHS-----------CSTTCSEEEEECCCSSCCCEEEEECSCCCHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHhhc-----------CCCCCCeEEEEEcCCCceEEEEEEeCCCCHHHHHHHHHHHHH
Confidence               000000 0001           122223889998764   788999999999999988887653

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.77  E-value=3.8e-05  Score=52.62  Aligned_cols=43  Identities=9%  Similarity=0.017  Sum_probs=35.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++|+.|+.-.||+|....+.+.++.+++.+. +.++-+.+.
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~~   62 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHVS   62 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEECS
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcCCc-eEEEEEecC
Confidence            5789999999999999999999999999998765 566655543

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.66  E-value=5.2e-05  Score=44.88  Aligned_cols=32  Identities=6%  Similarity=0.272  Sum_probs=25.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|+++||++|....+.|.+       .++.+..++++
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~   34 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMEN-------RGFDFEMINVD   34 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CCCCeEEEECC
Confidence            577999999999998877764       35777777775

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.65  E-value=0.00025  Score=47.34  Aligned_cols=38  Identities=18%  Similarity=0.339  Sum_probs=29.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++.+|+.|...+||+|++..+.+.++    .+  +.++.+.+.
T Consensus        13 ~a~~~vv~f~D~~Cp~C~~~~~~l~~l----~~--v~v~~~~~P   50 (147)
T 3gv1_A           13 NGKLKVAVFSDPDCPFCKRLEHEFEKM----TD--VTVYSFMMP   50 (147)
T ss_dssp             TCCEEEEEEECTTCHHHHHHHHHHTTC----CS--EEEEEEECC
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHhhc----Cc--eEEEEEEcc
Confidence            578999999999999999999988654    33  666665543

>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A

Probab=97.57  E-value=5.4e-05  Score=52.42  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=36.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH-HHHHHHhccCCcEEEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL-SQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l-~~~~~~~~~~~v~~v~is~d~   75 (170)
                      .+++++|.||...||+|....+.+ .++.+++... +.+..+.++.
T Consensus        16 ~~~~~~ief~d~~CP~C~~~~~~l~~~l~~~~~~~-v~~~~~~l~~   60 (195)
T 3c7m_A           16 NADKTLIKVFSYACPFCYKYDKAVTGPVSEKVKDI-VAFTPFHLET   60 (195)
T ss_dssp             SCTTEEEEEECTTCHHHHHHHHHTHHHHHHHTTTT-CEEEEEECTT
T ss_pred             CCCcEEEEEEeCcCcchhhCcHHHHHHHHHhCCCc-eEEEEEecCc
Confidence            467888999999999999999999 8998888654 7777777653

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.36  E-value=3.4e-05  Score=53.65  Aligned_cols=44  Identities=5%  Similarity=0.046  Sum_probs=36.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQ   75 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~   75 (170)
                      .++++|+.|+..|||+|....+.+   .++.+++.+ ++.++.++++.
T Consensus        13 ~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~   59 (189)
T 3l9v_A           13 VDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ-GSRMVKYHVSL   59 (189)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT-TCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC-CCEEEEEechh
Confidence            458999999999999999999986   577777765 48888888763

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.36  E-value=0.00018  Score=41.70  Aligned_cols=32  Identities=13%  Similarity=0.192  Sum_probs=25.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|+++||++|....+.|+++       |+.+..++++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~di~   34 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------GLAYNTVDIS   34 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------CCCcEEEECC
Confidence            5678999999999988877653       5777777765

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.35  E-value=9.2e-05  Score=46.11  Aligned_cols=27  Identities=26%  Similarity=0.209  Sum_probs=20.9

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHh
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKY   61 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~   61 (170)
                      .++.|+++|||+|+...+.|.++..++
T Consensus        13 ~v~~f~~~~C~~C~~~~~~L~~~~~~~   39 (105)
T 1kte_A           13 KVVVFIKPTCPFCRKTQELLSQLPFKE   39 (105)
T ss_dssp             CEEEEECSSCHHHHHHHHHHHHSCBCT
T ss_pred             CEEEEEcCCCHhHHHHHHHHHHcCCCC
Confidence            366689999999999888887654443

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=97.24  E-value=0.0046  Score=43.90  Aligned_cols=94  Identities=9%  Similarity=0.080  Sum_probs=62.8

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCc
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHA  112 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~  112 (170)
                      +..++.|...||+.|....+.+++++++++++ +.++.++.+.         ......++ .+++.-             
T Consensus       132 ~~~~l~f~~~~~~~~~~~~~~~~~vAk~~k~~-i~F~~vd~~~---------~~~~~~l~-~fgl~~-------------  187 (227)
T 4f9z_D          132 QIHLLLIMNKASPEYEENMHRYQKAAKLFQGK-ILFILVDSGM---------KENGKVIS-FFKLKE-------------  187 (227)
T ss_dssp             CEEEEEEECTTSTTHHHHHHHHHHHHHHTTTT-CEEEEEETTS---------GGGHHHHH-HTTCCG-------------
T ss_pred             ceEEEEEEcCCcchHHHHHHHHHHHHHHhhCC-EEEEEeCCcc---------HhHHHHHH-HcCCCc-------------
Confidence            34455566789999999999999999999887 8899887641         11222332 444320             


Q ss_pred             hhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe-CCCCCchHHHHHHHHHhcC
Q 030881          113 SPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY-YPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~-~~~~~~~~l~~~l~~~l~~  169 (170)
                                      ...|   ++.+++..+...+.. .+..+.+.+.+.++.++++
T Consensus       188 ----------------~~~P---~~~i~~~~~~~ky~~~~~~~t~~~i~~Fv~~~~~G  226 (227)
T 4f9z_D          188 ----------------SQLP---ALAIYQTLDDEWDTLPTAEVSVEHVQNFCDGFLSG  226 (227)
T ss_dssp             ----------------GGCS---EEEEEESSSCCEEEETTCCCCHHHHHHHHHHHHTT
T ss_pred             ----------------ccCC---EEEEEECCCCccccCCcCCCCHHHHHHHHHHHhCC
Confidence                            1122   666777555444544 3567889999999998875

>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0

Probab=97.19  E-value=7.4e-05  Score=51.76  Aligned_cols=40  Identities=18%  Similarity=0.146  Sum_probs=34.8

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++++||.|+..|||+|....|.+.++.+++   ++.+.-+.+.
T Consensus        22 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~---~v~~~~~p~~   61 (185)
T 3feu_A           22 GMAPVTEVFALSCGHCRNMENFLPVISQEA---GTDIGKMHIT   61 (185)
T ss_dssp             CCCSEEEEECTTCHHHHHHGGGHHHHHHHH---TSCCEEEECC
T ss_pred             CCCEEEEEECCCChhHHHhhHHHHHHHHHh---CCeEEEEecc
Confidence            689999999999999999999999999998   3666666653

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.13  E-value=0.00057  Score=43.72  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             EEEEecCCCCCChhh-HHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSN-YIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|+++|||+|... .+.|.++    ....+.+..++++
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~----~~~~i~~~~vdid   62 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKL----KVPRSKVLVLQLN   62 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTS----CCCGGGEEEEEGG
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHc----CCCCCCeEEEECc
Confidence            556999999999987 4444322    1112777777776

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.07  E-value=0.0011  Score=43.06  Aligned_cols=31  Identities=3%  Similarity=0.136  Sum_probs=22.7

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.|+++||++|+...+.|.++       ++.+..+.+|
T Consensus        30 vvf~~~~Cp~C~~~~~~L~~~-------~i~~~~vdid   60 (130)
T 2cq9_A           30 VIFSKTSCSYCTMAKKLFHDM-------NVNYKVVELD   60 (130)
T ss_dssp             EEEECSSCSHHHHHHHHHHHH-------TCCCEEEETT
T ss_pred             EEEEcCCChHHHHHHHHHHHc-------CCCcEEEECc
Confidence            338999999999988887764       3445556655

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.01  E-value=0.001  Score=41.15  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=26.5

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.-|+.|+.+|||+|....+.|.++       ++.+..++++
T Consensus        15 ~~~v~vy~~~~Cp~C~~ak~~L~~~-------~i~y~~idI~   49 (99)
T 3qmx_A           15 SAKIEIYTWSTCPFCMRALALLKRK-------GVEFQEYCID   49 (99)
T ss_dssp             CCCEEEEECTTCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             CCCEEEEEcCCChhHHHHHHHHHHC-------CCCCEEEEcC
Confidence            4556678999999999999888764       4566666665

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.00  E-value=0.0065  Score=36.33  Aligned_cols=31  Identities=13%  Similarity=0.226  Sum_probs=23.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      ++.|+++||++|....+.|.+.       ++.+..+++
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~-------~i~~~~vdv   38 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK-------GVKYTDIDA   38 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH-------TCCEEEECS
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCcEEEEC
Confidence            6678899999999988777653       356666654

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=96.98  E-value=0.0012  Score=38.86  Aligned_cols=32  Identities=16%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|+++||++|....+.|.+.       |+.+..++++
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~i~~~~~~i~   34 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK-------GVSFQELPID   34 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH-------TCCCEEEECT
T ss_pred             EEEEECCCChhHHHHHHHHHHC-------CCCcEEEECC
Confidence            5668899999999988777653       4556666665

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=96.95  E-value=0.00044  Score=43.88  Aligned_cols=35  Identities=9%  Similarity=0.064  Sum_probs=25.2

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcE---EEEeecC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLE---ILAFPCN   74 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~---~v~is~d   74 (170)
                      +..|+.|+++|||+|....+.|.+       .++.   +..++++
T Consensus        18 ~~~vv~f~~~~Cp~C~~~~~~L~~-------~~~~~~~~~~vdi~   55 (114)
T 2hze_A           18 NNKVTIFVKYTCPFCRNALDILNK-------FSFKRGAYEIVDIK   55 (114)
T ss_dssp             TTCEEEEECTTCHHHHHHHHHHTT-------SCBCTTSEEEEEGG
T ss_pred             cCCEEEEEeCCChhHHHHHHHHHH-------cCCCcCceEEEEcc
Confidence            345677999999999988776653       3455   6667765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=96.80  E-value=0.0021  Score=40.02  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=23.6

Q ss_pred             EEEEEEec-----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           34 VLLIVNVA-----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        34 ~~lv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++| |+.     +|||+|....+.|.++       ++.+..++++
T Consensus        18 ~vvv-f~~g~~~~~~C~~C~~~~~~L~~~-------~i~~~~vdi~   55 (105)
T 2yan_A           18 SVML-FMKGNKQEAKCGFSKQILEILNST-------GVEYETFDIL   55 (105)
T ss_dssp             SEEE-EESBCSSSBCTTHHHHHHHHHHHH-------TCCCEEEEGG
T ss_pred             CEEE-EEecCCCCCCCccHHHHHHHHHHC-------CCCeEEEECC
Confidence            4555 554     9999999888877654       4666777765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=96.77  E-value=0.0015  Score=43.46  Aligned_cols=22  Identities=5%  Similarity=0.208  Sum_probs=17.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQL   57 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~   57 (170)
                      |+.|+++|||+|....+.|.++
T Consensus        51 Vvvf~~~~Cp~C~~~k~~L~~~   72 (146)
T 2ht9_A           51 VVIFSKTSCSYCTMAKKLFHDM   72 (146)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCChhHHHHHHHHHHc
Confidence            3349999999999988887765

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=96.77  E-value=0.0044  Score=38.81  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=25.1

Q ss_pred             cEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           33 KVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        33 k~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..++|+..+    +|||+|......|.+       .|+.+..++++
T Consensus        15 ~~vvvy~~g~~~~~~Cp~C~~ak~~L~~-------~~i~~~~vdi~   53 (109)
T 1wik_A           15 ASVMLFMKGNKQEAKCGFSKQILEILNS-------TGVEYETFDIL   53 (109)
T ss_dssp             SSEEEEESSTTTCCCSSTHHHHHHHHHH-------TCSCEEEEESS
T ss_pred             CCEEEEEecCCCCCCCchHHHHHHHHHH-------cCCCeEEEECC
Confidence            345555554    899999988877754       35778888776

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=96.75  E-value=0.0044  Score=37.27  Aligned_cols=22  Identities=14%  Similarity=0.123  Sum_probs=17.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQL   57 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~   57 (170)
                      ++.|+++|||+|......|.++
T Consensus        14 v~ly~~~~Cp~C~~~~~~L~~~   35 (92)
T 3ic4_A           14 VLMYGLSTCPHCKRTLEFLKRE   35 (92)
T ss_dssp             SEEEECTTCHHHHHHHHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHc
Confidence            5668899999999988777664

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=96.75  E-value=0.0019  Score=39.00  Aligned_cols=32  Identities=16%  Similarity=0.269  Sum_probs=24.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|+.+||++|+...+.|.+       .++.+..++++
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~-------~~i~~~~~di~   39 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLAR-------KGAEFNEIDAS   39 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEEST
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            667889999999988776654       34666677665

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=96.73  E-value=0.001  Score=41.92  Aligned_cols=32  Identities=13%  Similarity=0.282  Sum_probs=22.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|+.+|||+|....+.|.++       ++.+-.+.++
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~   52 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL-------GVQPLVVELD   52 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEEGG
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------CCCCeEEEee
Confidence            6668999999999888777653       4444555554

>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A

Probab=96.59  E-value=0.00064  Score=47.24  Aligned_cols=43  Identities=9%  Similarity=0.093  Sum_probs=36.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++|+.|+..+||+|....+.+   .++.+++.+. +.++.++++
T Consensus        20 ~~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~-v~~~~~~~~   65 (191)
T 3l9s_A           20 AGEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEG-TKMTKYHVE   65 (191)
T ss_dssp             CSSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTT-CCEEEEECS
T ss_pred             CCCCeEEEEECCCChhHHHhChhccchHHHHHhCCCC-cEEEEEecc
Confidence            568999999999999999999987   6899998764 788887765

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=96.37  E-value=0.0045  Score=40.17  Aligned_cols=35  Identities=11%  Similarity=0.196  Sum_probs=21.7

Q ss_pred             EEEEecCCCCCChhh-HHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSN-YIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~-~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|+.+|||+|... .+.|.++    ....+.+..+.++
T Consensus        39 Vvvy~~~~Cp~C~~a~k~~L~~~----~~~~i~~~~vdvd   74 (129)
T 3ctg_A           39 VFVAAKTYCPYCKATLSTLFQEL----NVPKSKALVLELD   74 (129)
T ss_dssp             EEEEECTTCHHHHHHHHHHHTTS----CCCGGGEEEEEGG
T ss_pred             EEEEECCCCCchHHHHHHHHHhc----CccCCCcEEEEcc
Confidence            667889999999987 4444332    2111555555554

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=96.30  E-value=0.005  Score=38.93  Aligned_cols=32  Identities=19%  Similarity=0.239  Sum_probs=22.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|+.+|||+|....+.|.++       |+.+-.+.+|
T Consensus        19 v~vy~~~~Cp~C~~ak~~L~~~-------~i~~~~~dvd   50 (114)
T 3h8q_A           19 VVIFSKSYCPHSTRVKELFSSL-------GVECNVLELD   50 (114)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------TCCCEEEETT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHc-------CCCcEEEEec
Confidence            3448899999999888777653       4555556655

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=96.02  E-value=0.0017  Score=40.30  Aligned_cols=24  Identities=21%  Similarity=0.140  Sum_probs=19.5

Q ss_pred             EEEEEEecCCCCCChhhHHHHHHH
Q 030881           34 VLLIVNVASKCGMTNSNYIELSQL   57 (170)
Q Consensus        34 ~~lv~f~~~~C~~C~~~~~~l~~~   57 (170)
                      ..++.|+++|||+|....+.|.++
T Consensus        22 ~~v~ly~~~~Cp~C~~ak~~L~~~   45 (103)
T 3nzn_A           22 GKVIMYGLSTCVWCKKTKKLLTDL   45 (103)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHc
Confidence            346668999999999998888764

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=95.83  E-value=0.0058  Score=36.26  Aligned_cols=22  Identities=5%  Similarity=-0.035  Sum_probs=17.4

Q ss_pred             EEEEEecCCCCCChhhHHHHHH
Q 030881           35 LLIVNVASKCGMTNSNYIELSQ   56 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~   56 (170)
                      .++.|+.+|||+|+.....|.+
T Consensus         5 ~v~ly~~~~Cp~C~~~~~~L~~   26 (89)
T 3msz_A            5 KVKIYTRNGCPYCVWAKQWFEE   26 (89)
T ss_dssp             CEEEEECTTCHHHHHHHHHHHH
T ss_pred             EEEEEEcCCChhHHHHHHHHHH
Confidence            4677889999999987766644

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=95.44  E-value=0.12  Score=38.90  Aligned_cols=96  Identities=13%  Similarity=-0.021  Sum_probs=60.5

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      +..++.|...+|+.|....+.++++.+++++ ..+.++.++.+.       . ....+|+++.+++.-            
T Consensus       246 ~~~~l~f~~~~~~~~~~~~~~~~~vA~~~~~~~~~~f~~id~~~-------~-~~~~~~~~~~~gi~~------------  305 (350)
T 1sji_A          246 GIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDLSIVWIDPDD-------F-PLLVAYWEKTFKIDL------------  305 (350)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHHHHHHHGGGCSSCCEEEECGGG-------C-HHHHHHHHHHCCSCT------------
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHHHhCCCCceEEEEECchh-------h-HHHHHHHHhhcCCCc------------
Confidence            3344557788998899999999999999984 358898887642       1 222222222444320            


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE--eC---CCCCchHHHHHHHHHhcC
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR--YY---PTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~--~~---~~~~~~~l~~~l~~~l~~  169 (170)
                                        ..   |++.+++....-.+.  +.   +..+++.+.+.++.++.+
T Consensus       306 ------------------~~---P~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~F~~d~~~G  347 (350)
T 1sji_A          306 ------------------FK---PQIGVVNVTDADSVWMEIPDDDDLPTAEELEDWIEDVLSG  347 (350)
T ss_dssp             ------------------TS---CEEEEEESSSSCEEESCSSCCSCCCCHHHHHHHHHHHHTS
T ss_pred             ------------------cC---CcEEEEecccccccccCCCcccccCCHHHHHHHHHHHhcC
Confidence                              01   266777763222233  21   366888999999998865

>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}

Probab=95.25  E-value=0.064  Score=37.32  Aligned_cols=38  Identities=8%  Similarity=-0.020  Sum_probs=29.9

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .|.+|+..-||+|-...+.|.++.+++.+ ++.+.-...
T Consensus         4 ~I~~~~D~~CP~cy~~~~~l~~l~~~~~~-~v~v~~~p~   41 (208)
T 3kzq_A            4 KLYYVHDPMCSWCWGYKPTIEKLKQQLPG-VIQFEYVVG   41 (208)
T ss_dssp             EEEEEECTTCHHHHHHHHHHHHHHHHSCT-TSEEEEEEC
T ss_pred             EEEEEECCCCchhhhhhHHHHHHHHhCCC-CceEEEEec
Confidence            56667778899999999999999999863 466665554

>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A

Probab=95.20  E-value=0.028  Score=39.19  Aligned_cols=53  Identities=13%  Similarity=0.204  Sum_probs=39.2

Q ss_pred             CCCeecCCCCCCcEEEEEEecCCCCCChhhHHHH-HHHHHHhccC-CcEEEEeecC
Q 030881           21 RGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIEL-SQLYDKYKDQ-GLEILAFPCN   74 (170)
Q Consensus        21 ~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l-~~~~~~~~~~-~v~~v~is~d   74 (170)
                      .|.++ +..-.++++|+.|+.-.||+|....+.+ ..+.+.|.+. .+.++...+.
T Consensus        19 ~~~~~-~G~~~a~vtvvef~D~~CP~C~~~~~~~~~~l~~~~~~~g~v~~~~~~~p   73 (202)
T 3gha_A           19 KGQPV-LGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVM   73 (202)
T ss_dssp             TTSCE-ESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHTTTTTSEEEEEEECC
T ss_pred             CCCce-ecCCCCCEEEEEEECCCChhHHHHHHHhhHHHHHHhccCCeEEEEEEecC
Confidence            44433 4555678999999999999999988887 5666677543 4888887764

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=94.95  E-value=0.069  Score=40.64  Aligned_cols=96  Identities=13%  Similarity=0.044  Sum_probs=62.2

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      +..++.|...+|+.|......++++.++++++ .+.++.++.+.+       . ...+++...+++..            
T Consensus       248 ~~~~~~f~~~~~~~~~~~~~~l~~vA~~~~~~~ki~F~~id~~~~-------~-~~l~~~~~~fgl~~------------  307 (367)
T 3us3_A          248 GIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDLSIIWIDPDDF-------P-LLVPYWEKTFDIDL------------  307 (367)
T ss_dssp             TEEEEEECCTTSHHHHHHHHHHHHHHHHTTTCTTCCEEEECGGGC-------T-TTHHHHHHHHTCCT------------
T ss_pred             CcEEEEEEcCCChhHHHHHHHHHHHHHHcCCCCceEEEEECCccc-------h-hHHHHHHHhcCCCC------------
Confidence            45666688888888889999999999999986 499999987632       1 11222222333320            


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCc--EEEEeCC---CCCchHHHHHHHHHhcC
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ--VVDRYYP---TTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~--i~~~~~~---~~~~~~l~~~l~~~l~~  169 (170)
                                        ..   |.+.+++....  ..+.+.+   ..+.+.+.+.++.++.+
T Consensus       308 ------------------~~---P~~~i~~~~~~~~~~y~~~~~~~~~t~~~i~~F~~~~~~G  349 (367)
T 3us3_A          308 ------------------SA---PQIGVVNVTDADSVWMEMDDEEDLPSAEELEDWLEDVLEG  349 (367)
T ss_dssp             ------------------TS---CEEEEEETTTCCEEECCCCTTSCCCCHHHHHHHHHHHHHT
T ss_pred             ------------------CC---CeEEEEecccccceeecCCcccccCCHHHHHHHHHHHHcC
Confidence                              11   26677776543  2332332   57888899999988764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=94.87  E-value=0.022  Score=37.28  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=24.3

Q ss_pred             cEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           33 KVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        33 k~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..++||.++    +|||+|......|.+       .|+.+..++++
T Consensus        35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~-------~gv~y~~vdI~   73 (135)
T 2wci_A           35 NPILLYMKGSPKLPSCGFSAQAVQALAA-------CGERFAYVDIL   73 (135)
T ss_dssp             CSEEEEESBCSSSBSSHHHHHHHHHHHT-------TCSCCEEEEGG
T ss_pred             CCEEEEEEecCCCCCCccHHHHHHHHHH-------cCCceEEEECC
Confidence            346666665    899999987766643       35667777765

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=94.87  E-value=0.069  Score=31.62  Aligned_cols=32  Identities=16%  Similarity=0.063  Sum_probs=22.0

Q ss_pred             EEEEecC----CCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVAS----KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~----~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|+.+    |||+|......|++       +|+.+-.++++
T Consensus         2 v~iY~~~~~~~~Cp~C~~ak~~L~~-------~gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYGYDSNIHKCGPCDNAKRLLTV-------KKQPFEFINIM   37 (87)
T ss_dssp             EEEEECCTTTSCCHHHHHHHHHHHH-------TTCCEEEEESC
T ss_pred             EEEEEeCCCCCcCccHHHHHHHHHH-------cCCCEEEEEee
Confidence            4456789    99999987766554       45666666664

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=94.76  E-value=0.014  Score=42.81  Aligned_cols=40  Identities=8%  Similarity=0.184  Sum_probs=31.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .|+.+|+.|....||+|++..+.+.++.+.   -.+.++.+.+
T Consensus       146 ~gk~~I~vFtDp~CPYCkkl~~~l~~~l~~---~~Vr~i~~Pi  185 (273)
T 3tdg_A          146 NKDKILYIVSDPMCPHCQKELTKLRDHLKE---NTVRMVVVGW  185 (273)
T ss_dssp             GTTCEEEEEECTTCHHHHHHHHTHHHHHHH---CEEEEEECCC
T ss_pred             CCCeEEEEEECcCChhHHHHHHHHHHHhhC---CcEEEEEeec
Confidence            478999999999999999999999976654   3366665543

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.61  E-value=0.11  Score=32.40  Aligned_cols=36  Identities=14%  Similarity=0.226  Sum_probs=22.2

Q ss_pred             EEEEecCCCCCChh--hHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNS--NYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~--~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..++|+.|..  ......++.++   +++.+..++++
T Consensus        10 V~vy~~~~C~~C~~~~~~~~ak~~L~~---~gi~y~~vdI~   47 (111)
T 2ct6_A           10 IRVFIASSSGFVAIKKKQQDVVRFLEA---NKIEFEEVDIT   47 (111)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHHH---TTCCEEEEETT
T ss_pred             EEEEEcCCCCCcccchhHHHHHHHHHH---cCCCEEEEECC
Confidence            55567899999993  12222333333   56778888775

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=94.50  E-value=0.11  Score=31.23  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=20.5

Q ss_pred             EEEEecCCCCCCh--hhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTN--SNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~--~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..++||.|.  ..-....++.+   ++|+.+..++++
T Consensus         4 v~ly~~~~C~~c~~~~~~~~ak~~L~---~~~i~~~~~di~   41 (93)
T 1t1v_A            4 LRVYSTSVTGSREIKSQQSEVTRILD---GKRIQYQLVDIS   41 (93)
T ss_dssp             EEEEECSSCSCHHHHHHHHHHHHHHH---HTTCCCEEEETT
T ss_pred             EEEEEcCCCCCchhhHHHHHHHHHHH---HCCCceEEEECC
Confidence            4556789999993  11112222222   356777777775

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=94.29  E-value=0.027  Score=36.42  Aligned_cols=58  Identities=14%  Similarity=0.298  Sum_probs=32.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC-CCCCce
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK-SEFPIF  102 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~-~~~p~~  102 (170)
                      |+.|..+|||+|......|.+.. .+ +-.+.++-|..+       .+.+++.+++++..+ .+.|.+
T Consensus        16 Vvvysk~~Cp~C~~ak~lL~~~~-~~-~v~~~~idid~~-------~d~~~~~~~l~~~~G~~tVP~I   74 (127)
T 3l4n_A           16 IIIFSKSTCSYSKGMKELLENEY-QF-IPNYYIIELDKH-------GHGEELQEYIKLVTGRGTVPNL   74 (127)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHHE-EE-ESCCEEEEGGGS-------TTHHHHHHHHHHHHSCCSSCEE
T ss_pred             EEEEEcCCCccHHHHHHHHHHhc-cc-CCCcEEEEecCC-------CCHHHHHHHHHHHcCCCCcceE
Confidence            66677899999998887776631 00 112444444432       244566666653322 345554

>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}

Probab=93.83  E-value=0.12  Score=36.10  Aligned_cols=49  Identities=16%  Similarity=-0.006  Sum_probs=37.4

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHH-HhccC-CcEEEEeec
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYD-KYKDQ-GLEILAFPC   73 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~-~~~~~-~v~~v~is~   73 (170)
                      ..+..-.++++|+.|..--||+|....+.+....+ +|.+. .+.++.-.+
T Consensus         8 ~~~G~~~a~vtivef~D~~Cp~C~~~~~~~~~~l~~~~i~~g~v~~v~r~~   58 (205)
T 3gmf_A            8 HLLGNPAAKLRLVEFVSYTCPHCSHFEIESEGQLKIGMVQPGKGAIEVRNF   58 (205)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEC
T ss_pred             ceecCCCCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhccCCeEEEEEEeC
Confidence            33555668999999999999999999988866555 77433 388887766

>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A

Probab=93.74  E-value=0.063  Score=36.53  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=34.4

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHH-HHHHHHhccC-CcEEEEeecC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIEL-SQLYDKYKDQ-GLEILAFPCN   74 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l-~~~~~~~~~~-~v~~v~is~d   74 (170)
                      -.++++|+.|+...||+|....+.+ ..+.+++.+. ++.++...+.
T Consensus         9 ~~a~~~i~~f~D~~Cp~C~~~~~~l~~~l~~~~~~~~~v~~~~~~~p   55 (186)
T 3bci_A            9 KNGKPLVVVYGDYKCPYCKELDEKVMPKLRKNYIDNHKVEYQFVNLA   55 (186)
T ss_dssp             --CCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEECC
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHHHHHhccCCeEEEEEEecC
Confidence            3468889999999999999999998 5677788653 3777776654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=93.50  E-value=0.096  Score=32.80  Aligned_cols=26  Identities=15%  Similarity=0.387  Sum_probs=19.0

Q ss_pred             CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           42 SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        42 ~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +|||+|......|.+       +|+.+..++++
T Consensus        29 ~~Cp~C~~ak~~L~~-------~gi~y~~~di~   54 (111)
T 3zyw_A           29 PRCGFSKQMVEILHK-------HNIQFSSFDIF   54 (111)
T ss_dssp             BSSHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred             CcchhHHHHHHHHHH-------cCCCeEEEECc
Confidence            899999998876654       35666666664

>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*

Probab=93.19  E-value=0.1  Score=37.08  Aligned_cols=50  Identities=16%  Similarity=0.133  Sum_probs=38.3

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHH-HHHHHHhccC-CcEEEEeecC
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIEL-SQLYDKYKDQ-GLEILAFPCN   74 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l-~~~~~~~~~~-~v~~v~is~d   74 (170)
                      ..+..-.++++|+.|..-.||+|....+.+ .++.+++.+. .+.++...+.
T Consensus        32 ~~~G~~~A~vtIvef~Dy~CP~C~~~~~~~~~~l~~~~~~~g~V~~v~~~~p   83 (226)
T 3f4s_A           32 KLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFP   83 (226)
T ss_dssp             CEESCTTCSEEEEEEECTTCHHHHHHHHHTHHHHHHHHTTTTSEEEEEEECC
T ss_pred             CccCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHcccCCeEEEEEEeCC
Confidence            345555678999999999999999998875 6788888543 3777777664

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=92.74  E-value=0.38  Score=30.53  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=17.4

Q ss_pred             cEEEEEEec----CCCCCChhhHHHHHHH
Q 030881           33 KVLLIVNVA----SKCGMTNSNYIELSQL   57 (170)
Q Consensus        33 k~~lv~f~~----~~C~~C~~~~~~l~~~   57 (170)
                      ..++|+--.    +|||+|......|++.
T Consensus        16 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~   44 (121)
T 3gx8_A           16 APVVLFMKGTPEFPKCGFSRATIGLLGNQ   44 (121)
T ss_dssp             CSEEEEESBCSSSBCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCCCCCCccHHHHHHHHHHc
Confidence            445555554    3999999988777664

>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}

Probab=92.64  E-value=0.098  Score=35.81  Aligned_cols=44  Identities=14%  Similarity=0.263  Sum_probs=35.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++++|+.|..-.||+|....+.+..+.+++....+.++.-.+.
T Consensus        13 ~a~vtiv~f~D~~Cp~C~~~~~~~~~~l~~~~~g~v~~v~r~~p   56 (182)
T 3gn3_A           13 HGPRLFEVFLEPTCPFSVKAFFKLDDLLAQAGEDNVTVRIRLQS   56 (182)
T ss_dssp             CCSEEEEEEECTTCHHHHHHHTTHHHHHHHHCTTTEEEEEEECC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHhCCCCEEEEEEEcC
Confidence            46889999999999999999999988877762223888877764

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=92.18  E-value=0.74  Score=29.32  Aligned_cols=36  Identities=14%  Similarity=0.142  Sum_probs=23.6

Q ss_pred             EEEEecCCCCCCh--hhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTN--SNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~--~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|..+.||+|.  +.-....++.+.   +||.+-.++++
T Consensus         2 V~vYtt~~c~~c~~kk~c~~aK~lL~~---kgV~feEidI~   39 (121)
T 1u6t_A            2 IRVYIASSSGSTAIKKKQQDVLGFLEA---NKIGFEEKDIA   39 (121)
T ss_dssp             EEEEECTTCSCHHHHHHHHHHHHHHHH---TTCCEEEEECT
T ss_pred             EEEEecCCCCCccchHHHHHHHHHHHH---CCCceEEEECC
Confidence            4555679999995  233344444444   67888888875

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=92.02  E-value=0.31  Score=31.41  Aligned_cols=52  Identities=13%  Similarity=0.135  Sum_probs=35.1

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF   99 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +..|..++|+.|.+....|.+       +|+.+-.++++.    .+.+.+++.++.+ ..+.++
T Consensus         3 i~lY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~~----~~~~~~el~~~l~-~~~~~~   54 (132)
T 1z3e_A            3 VTLYTSPSCTSCRKARAWLEE-------HEIPFVERNIFS----EPLSIDEIKQILR-MTEDGT   54 (132)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCEEEEETTT----SCCCHHHHHHHHH-TCSSCG
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------cCCceEEEEccC----CCccHHHHHHHHH-HcCCCH
Confidence            445667999999988776654       456666666642    3456788888886 445543

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=91.79  E-value=0.23  Score=30.84  Aligned_cols=36  Identities=11%  Similarity=0.173  Sum_probs=23.1

Q ss_pred             CcEEEEEEec----CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           32 GKVLLIVNVA----SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        32 gk~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ...++|+--.    +|||+|......|.+       .|+.+-.++++
T Consensus        17 ~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~-------~gi~~~~~dI~   56 (109)
T 3ipz_A           17 SEKVVLFMKGTRDFPMCGFSNTVVQILKN-------LNVPFEDVNIL   56 (109)
T ss_dssp             SSSEEEEESBCSSSBSSHHHHHHHHHHHH-------TTCCCEEEEGG
T ss_pred             cCCEEEEEecCCCCCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence            3445554444    399999998876665       34666666654

>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}

Probab=91.71  E-value=1.6  Score=27.67  Aligned_cols=37  Identities=14%  Similarity=0.001  Sum_probs=28.8

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEee
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP   72 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is   72 (170)
                      ..+++||-|+.+||..|   .+.+.++++.+ + .+.|...+
T Consensus        38 ~~~v~VVGfF~~~~~~~---~~~F~~~A~~~-~-d~~F~~t~   74 (124)
T 2l4c_A           38 ATEVAVIGFFQDLEIPA---VPILHSMVQKF-P-GVSFGIST   74 (124)
T ss_dssp             TSSEEEEEECSCTTSTH---HHHHHHHHHHC-T-TSEEEEEC
T ss_pred             cCCCEEEEEECCCCChh---HHHHHHHHHhC-C-CceEEEEC
Confidence            35799999999999988   56778888887 3 37776653

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=90.92  E-value=3.5  Score=30.03  Aligned_cols=38  Identities=11%  Similarity=0.156  Sum_probs=29.1

Q ss_pred             EEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           34 VLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        34 ~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..|..|...+||+|...-.-|.++..+   .++..+.+..+
T Consensus        44 ~~VelyTs~gCp~C~~Ak~lL~~~~~~---~~vi~l~~~v~   81 (270)
T 2axo_A           44 GVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD   81 (270)
T ss_dssp             CEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred             cEEEEEeCCCCCChHHHHHHHHHhhcc---CCeeeEEEEEE
Confidence            566677789999999999999888765   34666666654

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=90.87  E-value=0.45  Score=30.15  Aligned_cols=52  Identities=10%  Similarity=0.120  Sum_probs=35.7

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF   99 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~   99 (170)
                      +..|..++|+.|++...-|.       ++|+.+-.+++..    .+.+.+++.++.+ ..+.++
T Consensus         2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~~----~~~~~~el~~~l~-~~~~~~   53 (120)
T 3l78_A            2 VTLFLSPSCTSCRKARAWLN-------RHDVVFQEHNIMT----SPLSRDELLKILS-YTENGT   53 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHH-------HTTCCEEEEETTT----SCCCHHHHHHHHH-HCSSTH
T ss_pred             EEEEeCCCCHHHHHHHHHHH-------HcCCCeEEEeccc----CCCcHHHHHHHHh-hcCCCH
Confidence            34556789999999876554       3567776776642    3568899999886 545543

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=89.99  E-value=0.18  Score=31.66  Aligned_cols=49  Identities=4%  Similarity=0.041  Sum_probs=32.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      |..|..++|+.|++....|.+       +|+.+-.+++..    .+.+.+++.++.+ +.+
T Consensus         2 i~iY~~~~C~~C~kak~~L~~-------~gi~~~~~di~~----~~~~~~~l~~~~~-~~g   50 (114)
T 1rw1_A            2 YVLYGIKACDTMKKARTWLDE-------HKVAYDFHDYKA----VGIDREHLRRWCA-EHG   50 (114)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------TTCCEEEEEHHH----HCCCHHHHHHHHH-HHC
T ss_pred             EEEEECCCChHHHHHHHHHHH-------CCCceEEEeecC----CCCCHHHHHHHHH-hCC
Confidence            345567999999988766654       456666665531    2346788888886 444

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=89.18  E-value=4.5  Score=28.65  Aligned_cols=33  Identities=12%  Similarity=-0.045  Sum_probs=23.2

Q ss_pred             eeEEECCCCcEEEEeCCCCCchH--HHHHHHHHhcC
Q 030881          136 AKFLVDKNGQVVDRYYPTTSLLS--LEHDIKKLLGL  169 (170)
Q Consensus       136 ~~~lid~~G~i~~~~~~~~~~~~--l~~~l~~~l~~  169 (170)
                      .+.+++.++. .|.+.+..+.+.  +.+.++.++.+
T Consensus       197 ~v~i~~~~~~-ky~~~~~~t~~~~~i~~F~~~~~~G  231 (252)
T 2h8l_A          197 VVAIRTAKGE-KFVMQEEFSRDGKALERFLQDYFDG  231 (252)
T ss_dssp             EEEEECTTSC-EEECCSCCCTTSHHHHHHHHHHHHT
T ss_pred             EEEEEeCcCc-EecCCcccCcchHHHHHHHHHHHCC
Confidence            6677776554 455555667777  99999888753

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=89.05  E-value=0.61  Score=29.55  Aligned_cols=53  Identities=19%  Similarity=0.229  Sum_probs=36.4

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP  100 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p  100 (170)
                      +..|..++|+.|++...-|.       ++|+.+-.+++..    .+.+.+++.++++ ..+.++.
T Consensus         5 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~~di~~----~~~~~~eL~~~l~-~~g~~~~   57 (120)
T 3fz4_A            5 LTFYEYPKCSTCRRAKAELD-------DLAWDYDAIDIKK----NPPAASLIRNWLE-NSGLELK   57 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHH-------HHTCCEEEEETTT----SCCCHHHHHHHHH-HSCCCGG
T ss_pred             EEEEeCCCChHHHHHHHHHH-------HcCCceEEEEecc----CchhHHHHHHHHH-HcCCCHH
Confidence            34455789999999886654       3456666666532    3568999999997 6665543

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=87.69  E-value=0.63  Score=29.48  Aligned_cols=53  Identities=6%  Similarity=0.004  Sum_probs=36.2

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFP  100 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p  100 (170)
                      +..|..++|+.|++...-|.       ++|+.+-.+++..    .+.+.+++.++++ ..+.++.
T Consensus         6 i~iY~~p~C~~c~ka~~~L~-------~~gi~~~~~di~~----~~~~~~eL~~~l~-~~g~~~~   58 (120)
T 3gkx_A            6 TLFLQYPACSTCQKAKKWLI-------ENNIEYTNRLIVD----DNPTVEELKAWIP-LSGLPVK   58 (120)
T ss_dssp             CEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETTT----TCCCHHHHHHHHH-HHTSCGG
T ss_pred             EEEEECCCChHHHHHHHHHH-------HcCCceEEEeccc----CcCCHHHHHHHHH-HcCCCHH
Confidence            34455789999999886554       3566666666532    3568999999997 6565543

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=87.68  E-value=0.29  Score=30.99  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=32.3

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      |..|..++|+.|++....|.+       +|+.+-.+++..    .+.+.+++.++.+ +.+
T Consensus         7 i~iY~~~~C~~C~ka~~~L~~-------~gi~y~~~di~~----~~~~~~~l~~~~~-~~g   55 (120)
T 2kok_A            7 VTIYGIKNCDTMKKARIWLED-------HGIDYTFHDYKK----EGLDAETLDRFLK-TVP   55 (120)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCEEEEEHHH----HCCCHHHHHHHHH-HSC
T ss_pred             EEEEECCCChHHHHHHHHHHH-------cCCcEEEEeeeC----CCCCHHHHHHHHH-HcC
Confidence            445567999999988876655       355555555531    1246788888886 555

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=84.50  E-value=0.96  Score=29.54  Aligned_cols=49  Identities=12%  Similarity=0.214  Sum_probs=33.3

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS   97 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~   97 (170)
                      ..|..++|+.|++...-|.+       +|+.+-.+++..    .+.+.+++.++.. ..+.
T Consensus         5 tiY~~p~C~~crkak~~L~~-------~gi~~~~idi~~----~~~~~~eL~~~~~-~~g~   53 (141)
T 1s3c_A            5 TIYHNPASGTSRNTLEMIRN-------SGTEPTIILYLE----NPPSRDELVKLIA-DMGI   53 (141)
T ss_dssp             EEECCTTCHHHHHHHHHHHH-------TTCCCEEECTTT----SCCCHHHHHHHHH-HHTS
T ss_pred             EEEECCCChHHHHHHHHHHH-------cCCCEEEEECCC----CCccHHHHHHHhc-ccCC
Confidence            34557899999988765543       567766676642    3457888888886 4444

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=83.98  E-value=1.1  Score=28.31  Aligned_cols=50  Identities=12%  Similarity=0.256  Sum_probs=35.0

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKS   97 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~   97 (170)
                      +..|..++|+.|++...-|.       ++|+.+-.+++..    .+.+.+++.++++ ..+.
T Consensus         7 i~iY~~p~C~~c~ka~~~L~-------~~gi~~~~~di~~----~~~~~~eL~~~l~-~~g~   56 (121)
T 3rdw_A            7 VTIYHNPRCSKSRETLALVE-------QQGITPQVVLYLE----TPPSVDKLKELLQ-QLGF   56 (121)
T ss_dssp             CEEECCTTCHHHHHHHHHHH-------TTTCCCEEECTTT----SCCCHHHHHHHHH-HTTC
T ss_pred             EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEeecc----CCCcHHHHHHHHH-hcCC
Confidence            34455789999998876553       4666666666542    4568999999997 5565

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=83.06  E-value=0.97  Score=31.87  Aligned_cols=35  Identities=11%  Similarity=0.132  Sum_probs=23.5

Q ss_pred             cEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           33 KVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        33 k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ...++.|..+||++|.+....|.+       +|+.+-.++++
T Consensus       169 ~~~i~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~~i~  203 (241)
T 1nm3_A          169 QESISIFTKPGCPFCAKAKQLLHD-------KGLSFEEIILG  203 (241)
T ss_dssp             CCCEEEEECSSCHHHHHHHHHHHH-------HTCCCEEEETT
T ss_pred             cceEEEEECCCChHHHHHHHHHHH-------cCCceEEEECC
Confidence            344666778999999988766654       24555556554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2f8aa1	184	c.47.1.10 (A:12-195) Glutathione peroxidase {Human	4e-42
d1wp0a1	160	c.47.1.10 (A:138-297) Thioredoxin-like protein Sco	5e-12
d2b7ka1	169	c.47.1.10 (A:111-279) Thioredoxin-like protein Sco	7e-11
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	2e-09
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-08
d1xzoa1	172	c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1	5e-06
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	2e-05
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	3e-04
d1knga_	144	c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY	3e-04
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	7e-04
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	0.004

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 4e-42
 Identities = 61/183 (33%), Positives = 92/183 (50%), Gaps = 25/183 (13%)

Query: 10  ESIFDLSVKD-ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEI 68
           +S++  S +  A G  V L + +GKVLLI NVAS  G T  +Y ++++L  +   +GL +
Sbjct: 1   QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 60

Query: 69  LAFPCNQFGEEEPGSNDQIADFVC-----TRFKSEFPIFEKIDVNGEHASPLYKLL---- 119
           L FPCNQFG +E   N++I + +        F+  F +FEK +VNG  A PL+  L    
Sbjct: 61  LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 120

Query: 120 ---------------KSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK 164
                                +  +D+ WNF KFLV  +G  + RY      + +E DI+
Sbjct: 121 PAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIE 180

Query: 165 KLL 167
            LL
Sbjct: 181 ALL 183

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 5e-12
 Identities = 18/156 (11%), Positives = 40/156 (25%), Gaps = 2/156 (1%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
             S+    G       Y G+ LLI    + C       +E         D    +     
Sbjct: 2   PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 61

Query: 74  NQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQW 133
                +      +        F  +           +  +  Y++  S       +D   
Sbjct: 62  LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIV 121

Query: 134 NF--AKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
           +     +L+  +G+ +D +        +   I   +
Sbjct: 122 DHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHM 157

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (132), Expect = 7e-11
 Identities = 18/156 (11%), Positives = 34/156 (21%), Gaps = 2/156 (1%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKC-GMTNSNYIELSQLYDKYKDQGLEILAFP 72
              ++D  G+E       GK  +I    S C  +      +L    +    +    L   
Sbjct: 8   PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 67

Query: 73  CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK-WGIFGDDI 131
                                            +V                        +
Sbjct: 68  FITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLV 127

Query: 132 QWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
             +   +L+D  GQ VD         +    I + +
Sbjct: 128 DHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHV 163

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 51.1 bits (121), Expect = 2e-09
 Identities = 23/155 (14%), Positives = 41/155 (26%), Gaps = 18/155 (11%)

Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72
              ++K A      +   K K  LI   AS C +  S   +  +     K     ++   
Sbjct: 4   TLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVA 63

Query: 73  CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ 132
              F         +  DF        +P    +  NG   +                 I 
Sbjct: 64  SPGFLH-----EKKDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLN-------------IS 105

Query: 133 WNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
              +  L+ K+G V      + +       I+   
Sbjct: 106 VYPSWALIGKDGDVQRIVKGSINEAQALALIRDPN 140

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 48.9 bits (115), Expect = 2e-08
 Identities = 22/169 (13%), Positives = 42/169 (24%), Gaps = 24/169 (14%)

Query: 4   QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD 63
                P  + DL+ +DA G    LS ++GK LL+   A+ C                   
Sbjct: 28  TMASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEM------------ 75

Query: 64  QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGK 123
                   P     + +    +     +    +        +          +   K+  
Sbjct: 76  --------PALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKV 127

Query: 124 WGIFGDDIQWNF--AKFLVDKNGQVVDRY--YPTTSLLSLEHDIKKLLG 168
           +       +        LVD  G  +         +       I+   G
Sbjct: 128 FQDLKAIGRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLIRAATG 176

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]} Length = 172

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.3 bits (98), Expect = 5e-06
 Identities = 27/158 (17%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASK---CGMTNSNYIELSQLYDKYKDQGLEILA 70
             + ++  G  V L + KG+V L   + +         + ++   Q   K ++  + I++
Sbjct: 13  PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIIS 72

Query: 71  FPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDD 130
           F  +   ++        A++  +    +F          E A   +K +     G     
Sbjct: 73  FSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVI 132

Query: 131 IQWNFAKFLVDKNGQVVDRYYPT--TSLLSLEHDIKKL 166
            Q +F  +LV  +G+V+  Y     T    +  D+K  
Sbjct: 133 HQSSF--YLVGPDGKVLKDYNGVENTPYDDIISDVKSA 168

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 20/154 (12%), Positives = 42/154 (27%), Gaps = 20/154 (12%)

Query: 13  FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFP 72
                    G          K  LI   +  C +      ++++  DKY+DQ        
Sbjct: 10  LTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ------LN 63

Query: 73  CNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQ 132
                      +        T  + +      +D +                  F    +
Sbjct: 64  VVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHAL------------TDAFE--NE 109

Query: 133 WNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL 166
           +  A ++ DK GQ+       + +  LE  + ++
Sbjct: 110 YVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVNRV 143

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 37.1 bits (85), Expect = 3e-04
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ 64
          +  +V      ++ L +  GK +     AS C  + +   +L   Y  + ++
Sbjct: 9  YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK 60

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 23/154 (14%), Positives = 43/154 (27%), Gaps = 26/154 (16%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
            L   + +   +D + +KGKV L+   AS C   +     L++L    + Q + I     
Sbjct: 13  GLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDKRFQLVGINYKDA 72

Query: 74  NQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQW 133
                   G        V         I   +    E                       
Sbjct: 73  ADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGVPET---------------------- 110

Query: 134 NFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL 167
               F+V + G +V +     +  +L   +   +
Sbjct: 111 ----FVVGREGTIVYKLVGPITPDNLRSVLLPQM 140

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 36.1 bits (82), Expect = 7e-04
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ 64
            +   ++  EV L +  GK + +   AS C         L++ Y+K+   
Sbjct: 10 GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA 60

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 19/155 (12%), Positives = 37/155 (23%), Gaps = 28/155 (18%)

Query: 14  DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC 73
             +     G   D ++ +GK  ++      C   N+    LSQ+           +A   
Sbjct: 6   QFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGIATRA 65

Query: 74  NQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQW 133
           +                     K         D +G   +         ++ +       
Sbjct: 66  DVG------------AMQSFVSKYNLNFTNLNDADGVIWA---------RYNVPWQP--- 101

Query: 134 NFAKFLVDKNGQV--VDRYYPTTSLLSLEHDIKKL 166
             A      +G    V+      S   L   +  L
Sbjct: 102 --AFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	100.0
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	100.0
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.97
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.97
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.96
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.96
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.95
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.95
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.95
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.95
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.95
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.95
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.95
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.94
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.94
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.93
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.93
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.93
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.92
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.92
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.92
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.92
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.92
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.91
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.91
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.91
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.91
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.9
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.89
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.89
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.89
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.89
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.88
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.87
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.86
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.64
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.64
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.62
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.62
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.61
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.6
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.59
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.58
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.58
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.58
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.57
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.56
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.55
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.55
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.51
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.51
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.49
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.48
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.47
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.46
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.46
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.46
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.42
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.4
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.32
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.31
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.31
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.27
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.23
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.23
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.19
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.1
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.04
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.04
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.0
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	98.97
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	98.96
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.72
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.64
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.14
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	97.78
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.64
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.5
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.48
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	95.83
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.67
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	95.67
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	95.51
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.14
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	94.93
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	94.55
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	94.54
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	94.44
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	94.0
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	92.81
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	92.27
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	91.83
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	91.29
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	86.25
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	85.42
d1pn0a2	201	Phenol hydroxylase, C-terminal domain {Soil-living	84.17

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8e-33  Score=193.28  Aligned_cols=150  Identities=19%  Similarity=0.263  Sum_probs=123.0

Q ss_pred             ccccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            2 TSQFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         2 ~~~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      +...+..|+++|+|+|.|.+|+.++|++++||++||.||++|||+|+.++|.|++++++|+++ +.+++|+.++......
T Consensus         2 ~~p~l~vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~-v~~v~i~snd~~~~~~   80 (187)
T d2cvba1           2 QYPELPLESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK-VAFVGINANDYEKYPE   80 (187)
T ss_dssp             BSCCCCTTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT-EEEEEEECCCTTTCGG
T ss_pred             CCCCCCCCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc-ceeeeeeccccccccc
Confidence            445688999999999999999999999999999999999999999999999999999999874 9999998765555556


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC--------C
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP--------T  153 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~--------~  153 (170)
                      ++.+.++++.+ +++.+||++  .|..+..+.   .           +++...|++||||++|+|+|+..-        .
T Consensus        81 ~~~e~~~~~~~-~~~~~~p~l--~D~~~~~~~---~-----------~~v~~~P~~~liD~~G~i~y~G~idd~~~~~~~  143 (187)
T d2cvba1          81 DAPEKMAAFAE-EHGIFFPYL--LDETQEVAK---A-----------YRALRTPEVFLFDERRLLRYHGRVNDNPKDPSK  143 (187)
T ss_dssp             GSHHHHHHHHH-HHTCCSCEE--ECSSSHHHH---H-----------TTCCEESEEEEECTTCBEEEEECSSSCTTCGGG
T ss_pred             cchHHHHHHHH-HhCCcceee--echhhhhcc---c-----------ccccceeeEEEEcCCCeEEEEeeecCCCCCCCC
Confidence            78889999997 889999999  665544332   2           234445599999999999997321        1


Q ss_pred             CCchHHHHHHHHHhcC
Q 030881          154 TSLLSLEHDIKKLLGL  169 (170)
Q Consensus       154 ~~~~~l~~~l~~~l~~  169 (170)
                      ....+|+++|+++|++
T Consensus       144 ~~~~~L~~Ai~~ll~g  159 (187)
T d2cvba1         144 VQSHDLEAAIEALLRG  159 (187)
T ss_dssp             CCCCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHcC
Confidence            2334599999999875

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.9e-32  Score=186.67  Aligned_cols=158  Identities=38%  Similarity=0.674  Sum_probs=143.2

Q ss_pred             ccccceeeCCC-CCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHH
Q 030881           11 SIFDLSVKDAR-GHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIAD   89 (170)
Q Consensus        11 ~~p~f~l~~~~-g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~   89 (170)
                      ++-+|++.|.+ |+.++|++++||++||.+|||||++|..+.+.|++++++|+++|+.++++.+++|..+++.+.+++.+
T Consensus         2 siydf~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g~~Il~fP~nqF~~qE~~~~~ei~~   81 (184)
T d2f8aa1           2 SVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILN   81 (184)
T ss_dssp             CGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGTEEEEEEECCCSTTTTCSCHHHHHH
T ss_pred             ceeeeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccceeEEEeeccccccccccchhhhhh
Confidence            56799999986 67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHh-----hcCCCCCceEEeecCCCCchhHHHHhHhccCCc-------------------cCCccccCceeEEECCCCc
Q 030881           90 FVCT-----RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI-------------------FGDDIQWNFAKFLVDKNGQ  145 (170)
Q Consensus        90 ~~~~-----~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~-------------------~~~~i~~~p~~~lid~~G~  145 (170)
                      +++.     .++.+||+....+.++..+..+|.++....|+.                   .+..|.||++.||||++|+
T Consensus        82 f~~~~~~~~~~~~~f~~~~ki~VnG~~a~ply~~Lk~~~~~~~~~~~~~~~~p~~~~~~~~~~~~i~WNFtKFLIdr~G~  161 (184)
T d2f8aa1          82 SLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGV  161 (184)
T ss_dssp             HHHHTSSCTTCCCSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEEECTTSC
T ss_pred             hhheeccccccccccccceeeeecCCCCCHHHHHHHhhCCCCccccccccccccccccccccCCCccceEEEEEECCCCC
Confidence            9863     567899999888899999999999988665532                   2356999999999999999


Q ss_pred             EEEEeCCCCCchHHHHHHHHHhc
Q 030881          146 VVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       146 i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      ++.++.+..++.++++.|+++|+
T Consensus       162 vv~rf~~~~~p~~i~~~Ie~lL~  184 (184)
T d2f8aa1         162 PLRRYSRRFQTIDIEPDIEALLS  184 (184)
T ss_dssp             EEEEECTTSCGGGGHHHHHHHHC
T ss_pred             EEEEECCCCCHHHHHHHHHHHhC
Confidence            99999999999999999999985

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=3.5e-31  Score=176.42  Aligned_cols=133  Identities=20%  Similarity=0.363  Sum_probs=113.7

Q ss_pred             CCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHH
Q 030881            8 NPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      .|.++|+|++.+.+|+++++++++||++||+||++||++|..+++.++++++++.+.++.+++|+++       ++.+++
T Consensus         1 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~-------~~~~~~   73 (137)
T d1st9a_           1 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVG-------ESKIAV   73 (137)
T ss_dssp             CCEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEES-------CCHHHH
T ss_pred             CcCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeeccccccccccccccccccccccccc-------chhhhH
Confidence            4889999999999999999999999999999999999999999999999999999999999999987       378899


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      +++++ +++.+||++  .|..+....   .           +++...|++||||++|+|++++.|..+.+.+.+.|+
T Consensus        74 ~~~~~-~~~~~~~~~--~d~~~~~~~---~-----------~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~  133 (137)
T d1st9a_          74 HNFMK-SYGVNFPVV--LDTDRQVLD---A-----------YDVSPLPTTFLINPEGKVVKVVTGTMTESMIHDYMN  133 (137)
T ss_dssp             HHHHH-HTTCCSCEE--EETTSHHHH---H-----------TTCCSSCEEEEECTTSEEEEEEESCCCHHHHHHHHH
T ss_pred             HHHHH-HcCCCcccc--ccccchhhh---h-----------hhccccceEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            99997 889999988  554432111   1           234444599999999999999999888777766554

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=1.4e-30  Score=172.79  Aligned_cols=132  Identities=15%  Similarity=0.226  Sum_probs=109.5

Q ss_pred             CcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHH
Q 030881            9 PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus         9 g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      |+..++|++.+.+|+++++++++||++||+||++|||+|+.++|.|++++++++  ++.+++|+.+       ++.+.++
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~--~v~~v~v~~~-------~~~~~~~   71 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--AVTFVGIATR-------ADVGAMQ   71 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--TSEEEEEECS-------SCHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc--cccccccccc-------cchhhhh
Confidence            678999999999999999999999999999999999999999999999999874  5999999986       3788999


Q ss_pred             HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEE--eCCCCCchHHHHHHHHH
Q 030881           89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDR--YYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~--~~~~~~~~~l~~~l~~~  166 (170)
                      +|++ +++++||++  .|..+....   .           +++...|++||||++|+|++.  ..|..+.+++.+.|.+|
T Consensus        72 ~~~~-~~~~~~p~~--~d~~~~~~~---~-----------~~v~~~P~~~lid~~G~i~~v~~~~g~~~~~~l~~~l~~L  134 (134)
T d1lu4a_          72 SFVS-KYNLNFTNL--NDADGVIWA---R-----------YNVPWQPAFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL  134 (134)
T ss_dssp             HHHH-HHTCCSEEE--ECTTSHHHH---H-----------TTCCSSSEEEEECTTSCEEEECCSSSCCCHHHHHHHHHHC
T ss_pred             hhhh-hhcccccee--eCchHHHHH---H-----------cCCCcCCEEEEEeCCCeEEEEeccCCCCCHHHHHHHHHcC
Confidence            9997 789999988  554433221   1           345555699999999999876  35566777788887764

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.96  E-value=9.3e-29  Score=171.11  Aligned_cols=144  Identities=19%  Similarity=0.168  Sum_probs=113.2

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ...|.++|+|+|.|.+|+.++|++++||++||+||++||++|..+.+.++++++.+.+.++.++.|++|.      ++.+
T Consensus        30 ~~~~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~------~~~~  103 (176)
T d1jfua_          30 ASAPLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDT------RDPE  103 (176)
T ss_dssp             CCSCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCC------SCTT
T ss_pred             cCCCCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccccccccccccc------cchh
Confidence            4567789999999999999999999999999999999999999999999999999999999999999863      4678


Q ss_pred             HHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC--CchHHHHHH
Q 030881           86 QIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT--SLLSLEHDI  163 (170)
Q Consensus        86 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~--~~~~l~~~l  163 (170)
                      ++++|++ +++..++.+. .+.......   .+.  ..     +.+...|++||||++|+|++++.|..  +.+++.+.|
T Consensus       104 ~~~~~~~-~~~~~~~~~~-~d~~~~~~~---~~~--~~-----~~v~~~P~~~lID~~G~I~~~~~G~~~~~~~e~~~~l  171 (176)
T d1jfua_         104 KPKTFLK-EANLTRLGYF-NDQKAKVFQ---DLK--AI-----GRALGMPTSVLVDPQGCEIATIAGPAEWASEDALKLI  171 (176)
T ss_dssp             HHHHHHH-HTTCCTTCCE-ECTTCHHHH---HHH--TT-----TCCSSSSEEEEECTTSBEEEEEESCCCTTSHHHHHHH
T ss_pred             hhhhhHh-hhCCcceeee-ecchhHHHH---HHh--hh-----ccCCCCCeEEEEcCCCEEEEEEECCCCCChHHHHHHH
Confidence            8999997 7788766442 333322111   111  11     22333459999999999999988754  446688888


Q ss_pred             HHHh
Q 030881          164 KKLL  167 (170)
Q Consensus       164 ~~~l  167 (170)
                      +.++
T Consensus       172 ~al~  175 (176)
T d1jfua_         172 RAAT  175 (176)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8775

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=3.6e-29  Score=167.74  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=115.4

Q ss_pred             cCCcccccceeeC--CCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881            7 QNPESIFDLSVKD--ARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus         7 ~~g~~~p~f~l~~--~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      ..|+++|+|++.+  .+|..++++.++||++||+||++||++|..++|.|+++++++++ ++.+++|+++.+..  ..+.
T Consensus         2 k~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~-~~~~i~v~~~~~~~--~~~~   78 (143)
T d2b5xa1           2 KLRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVAVHMPRSED--DLDP   78 (143)
T ss_dssp             CTTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT-TSEEEEEECCCSTT--TSSH
T ss_pred             CCCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhc-cccceeEEeecccc--ccch
Confidence            5799999999777  48999999999999999999999999999999999999999986 49999999875432  2356


Q ss_pred             HHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           85 DQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        85 ~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      +.++++.+ +++++||++  .|..+...    ..          +++...|++|+||++|+|++.+.|..+.+.+++.|+
T Consensus        79 ~~~~~~~~-~~~~~~p~~--~D~~~~~~----~~----------~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~  141 (143)
T d2b5xa1          79 GKIKETAA-EHDITQPIF--VDSDHALT----DA----------FENEYVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN  141 (143)
T ss_dssp             HHHHHHHH-HTTCCSCEE--ECSSCHHH----HH----------TCCCCSSEEEEECTTCBEEEEEESCSTTHHHHHHHH
T ss_pred             hhhhhHHH-hhccCcccc--ccCccchH----HH----------cCCCcCCEEEEECCCCEEEEEEECCCCHHHHHHHHH
Confidence            77888887 889999998  55443221    11          334455599999999999999999888888999888


Q ss_pred             HH
Q 030881          165 KL  166 (170)
Q Consensus       165 ~~  166 (170)
                      ++
T Consensus       142 ~l  143 (143)
T d2b5xa1         142 RV  143 (143)
T ss_dssp             HH
T ss_pred             hC
Confidence            75

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=2.3e-28  Score=161.98  Aligned_cols=128  Identities=17%  Similarity=0.186  Sum_probs=103.6

Q ss_pred             cccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        12 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      ..+|++.|.+|+.+++++++||++||+||++||++|+.++|.++++++++++  +.++.|+.+       +......+++
T Consensus         5 ~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~--~~~v~v~~~-------d~~~~~~~~~   75 (134)
T d1zzoa1           5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE--VTFVGVAGL-------DQVPAMQEFV   75 (134)
T ss_dssp             GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECS-------SCHHHHHHHH
T ss_pred             CcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc--ccccccccc-------ccchhHHHHH
Confidence            3579999999999999999999999999999999999999999999999865  777777765       4778888998


Q ss_pred             HhhcCC-CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881           92 CTRFKS-EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus        92 ~~~~~~-~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                      . +++. .||++  .|..+....   .           +++...|++|+||++|+|++. .|..+.+++.+.|+++
T Consensus        76 ~-~~~~~~~~~l--~D~~~~~~~---~-----------~~v~~~P~~~iiD~~G~i~~~-~g~~~~~~l~~~i~~L  133 (134)
T d1zzoa1          76 N-KYPVKTFTQL--ADTDGSVWA---N-----------FGVTQQPAYAFVDPHGNVDVV-RGRMSQDELTRRVTAL  133 (134)
T ss_dssp             H-HTTCTTSEEE--ECTTCHHHH---H-----------TTCCSSSEEEEECTTCCEEEE-ESCCCHHHHHHHHHHH
T ss_pred             H-hcCCcceeEE--eeccchHHH---h-----------cCCCccCeEEEECCCCeEEEE-ECCCCHHHHHHHHHhh
Confidence            7 5565 58888  554432211   1           334455599999999999774 5778888899988875

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.95  E-value=1.2e-28  Score=165.11  Aligned_cols=139  Identities=17%  Similarity=0.086  Sum_probs=111.2

Q ss_pred             cccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHH
Q 030881           12 IFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFV   91 (170)
Q Consensus        12 ~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~   91 (170)
                      .+-.+|.+.+|+++++.+++||++||+||++||++|+.++|.+++++++++..++.+++|+.+.+...  .......++.
T Consensus         3 ~~~~~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~i~v~~~~~~~~--~~~~~~~~~~   80 (143)
T d2fy6a1           3 HTLSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHE--KKDGDFQKWY   80 (143)
T ss_dssp             HHHHTCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTTSEEEEEECTTSTTC--CCTTHHHHHH
T ss_pred             CCcceeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCCcEEEEEeeeecccc--cchhhhhhhh
Confidence            34567889999999999999999999999999999999999999999999999999999998754332  2455666666


Q ss_pred             HhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881           92 CTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        92 ~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      .......||++  .|..+....   .           +++...|++++||++|+|++++.|..+.+++.+.|+++.+
T Consensus        81 ~~~~~~~~~~~--~D~~~~~~~---~-----------~~v~~~P~~~liD~~G~i~~~~~G~~~~~~~~~~l~~~~a  141 (143)
T d2fy6a1          81 AGLNYPKLPVV--TDNGGTIAQ---S-----------LNISVYPSWALIGKDGDVQRIVKGSINEAQALALIRDPNA  141 (143)
T ss_dssp             TTSCCTTSCEE--ECTTCHHHH---H-----------TTCCSSSEEEEECTTSCEEEEEESCCCHHHHHHHHHCTTS
T ss_pred             hhcCCcccccc--cccchHHHH---H-----------cCCCccCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            64556678988  554433221   1           3344555999999999999999999998888888887654

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.95  E-value=2.4e-29  Score=171.52  Aligned_cols=150  Identities=17%  Similarity=0.235  Sum_probs=115.3

Q ss_pred             cccCCcccccceeeCCCCCeecCCCC--CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTY--KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~--~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      ++..|+++|+|+|.+.+|+.++|+++  +||++||+|| ++|||+|..+++.++++++++++.++.+++|+.|       
T Consensus         1 mi~vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d-------   73 (160)
T d2cx4a1           1 LVELGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKANAEVLAISVD-------   73 (160)
T ss_dssp             CCCTTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTCCEEEEEESS-------
T ss_pred             CCcCCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhccccccccccccccccccc-------
Confidence            36789999999999999999999997  8999999998 8999999999999999999999999999999975       


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC-----CCc
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT-----TSL  156 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~-----~~~  156 (170)
                       +++.++++.. .++++||++  .|..+.... .|+......   .+....+.|++||||++|+|++++.+.     .+.
T Consensus        74 -~~~~~~~~~~-~~~~~~~~l--~D~~~~~~~-~~gv~~~~~---~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~  145 (160)
T d2cx4a1          74 -SPWCLKKFKD-ENRLAFNLL--SDYNREVIK-LYNVYHEDL---KGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDY  145 (160)
T ss_dssp             -CHHHHHHHHH-HHTCSSEEE--ECTTSHHHH-HTTCEEEEE---TTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCH
T ss_pred             -chhhhhhhcc-cceeeEEEe--ecCCcchHH-HcCcccccc---ccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCH
Confidence             6788888886 779999998  555443221 111110001   112223455999999999999986442     244


Q ss_pred             hHHHHHHHHHhcC
Q 030881          157 LSLEHDIKKLLGL  169 (170)
Q Consensus       157 ~~l~~~l~~~l~~  169 (170)
                      +++.+.|++++.+
T Consensus       146 ~eil~~l~~l~~e  158 (160)
T d2cx4a1         146 DEVVREANKIAGE  158 (160)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHccc
Confidence            5677777777665

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=1.1e-28  Score=167.18  Aligned_cols=145  Identities=14%  Similarity=0.194  Sum_probs=107.2

Q ss_pred             cccCCcccccceeeCCCCCeecCCCCCCc-EEEE-EEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            5 FIQNPESIFDLSVKDARGHEVDLSTYKGK-VLLI-VNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g~~~~l~~~~gk-~~lv-~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ++..|+++|+|++.|.+|++++|++++|+ ++|+ +||++|||+|..+++.++++++++++.|+++++|+.|        
T Consensus         1 ml~vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~~~vi~vs~d--------   72 (153)
T d1xvwa1           1 MLNVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDDSAALAISVG--------   72 (153)
T ss_dssp             CCCTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESC--------
T ss_pred             CCCCcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccccccccccch--------
Confidence            46789999999999999999999999985 4554 4558999999999999999999999999999999976        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC----CchH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT----SLLS  158 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~----~~~~  158 (170)
                      +.+.+++|.+ +++++||++.+.+..+... .  .|.....+    .+++ .|++||||++|+|++.+....    +..+
T Consensus        73 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~-~--~ygv~~~~----~g~~-~r~tfvID~~G~I~~~~~~~~~~~~~~~~  143 (153)
T d1xvwa1          73 PPPTHKIWAT-QSGFTFPLLSDFWPHGAVS-Q--AYGVFNEQ----AGIA-NRGTFVVDRSGIIRFAEMKQPGEVRDQRL  143 (153)
T ss_dssp             CHHHHHHHHH-HHTCCSCEEECTTTTTHHH-H--HTTCEETT----TTEE-CSEEEEECTTSBEEEEEECCTTCCCCHHH
T ss_pred             hhhHHHHHhh-hhccceeEEecccccchhH-H--Hhhhhhhc----cCce-eeeEEEECCCCEEEEEEEeCCCcccCHHH
Confidence            7889999997 7799999884322222211 1  12111111    1222 358999999999998864322    2334


Q ss_pred             HHHHHHHH
Q 030881          159 LEHDIKKL  166 (170)
Q Consensus       159 l~~~l~~~  166 (170)
                      +.+.|+.|
T Consensus       144 ~~~~L~aL  151 (153)
T d1xvwa1         144 WTDALAAL  151 (153)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            55555544

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=7.9e-27  Score=160.76  Aligned_cols=154  Identities=18%  Similarity=0.295  Sum_probs=115.2

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCC
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~   83 (170)
                      +.+.++|+|+|.|.+|+.+++++++||++||+||++||+ .|...++.|.++++++.+.  .+.+++||+|.    ..|+
T Consensus         6 p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp----~~Dt   81 (172)
T d1xzoa1           6 PLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP----ENDK   81 (172)
T ss_dssp             CCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT----TTCC
T ss_pred             CCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcccccccccccccccc----ccch
Confidence            356688999999999999999999999999999999997 7999999999999999754  49999999984    4578


Q ss_pred             hHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCc-----cCCccccCceeEEECCCCcEEEEeCCCC--Cc
Q 030881           84 NDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI-----FGDDIQWNFAKFLVDKNGQVVDRYYPTT--SL  156 (170)
Q Consensus        84 ~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~i~~~p~~~lid~~G~i~~~~~~~~--~~  156 (170)
                      ++.+++|.+ .++..++-+.  -..+.....+..+........     ..+.+-|.+++||||++|+|+..+.|..  +.
T Consensus        82 p~~l~~y~~-~~~~~~~~w~--~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~~~~~  158 (172)
T d1xzoa1          82 PKQLKKFAA-NYPLSFDNWD--FLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVENTPY  158 (172)
T ss_dssp             HHHHHHHHT-TSCCCGGGEE--EEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSSSCCH
T ss_pred             HHHHHHHHH-Hhccccccce--eeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCCCCCH
Confidence            999999997 8888877542  122222222222221111111     1145667789999999999998876643  44


Q ss_pred             hHHHHHHHHHh
Q 030881          157 LSLEHDIKKLL  167 (170)
Q Consensus       157 ~~l~~~l~~~l  167 (170)
                      +++.+.|+++-
T Consensus       159 ~~l~~dik~~~  169 (172)
T d1xzoa1         159 DDIISDVKSAS  169 (172)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            66777777653

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=1.1e-27  Score=164.73  Aligned_cols=141  Identities=13%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             cccCCcccccceeeCCCC---------------CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEE
Q 030881            5 FIQNPESIFDLSVKDARG---------------HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEI   68 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~~~g---------------~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~   68 (170)
                      ++.+|+++|+|+|.+..|               +.+++++++||++||+|| ++|||+|..+++.+++.+++|+++|+++
T Consensus         2 ~l~vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g~~v   81 (169)
T d2bmxa1           2 LLTIGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRDAQI   81 (169)
T ss_dssp             BCCTTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTTEEE
T ss_pred             CCCCCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccCcce
Confidence            578999999999998877               578999999999999999 8999999999999999999999999999


Q ss_pred             EEeecCCCCCCCCCChHHHHHHHHhhcC----CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCC
Q 030881           69 LAFPCNQFGEEEPGSNDQIADFVCTRFK----SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNG  144 (170)
Q Consensus        69 v~is~d~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G  144 (170)
                      ++||.|        +.....++.+ .++    .+||++  .|.++..+.. |+  ..   ..   .-...|++||||++|
T Consensus        82 v~is~d--------~~~~~~~~~~-~~~~~~~~~f~ll--~D~~~~v~~~-yg--v~---~~---~~~~~r~~fvID~~G  141 (169)
T d2bmxa1          82 LGVSID--------SEFAHFQWRA-QHNDLKTLPFPML--SDIKRELSQA-AG--VL---NA---DGVADRVTFIVDPNN  141 (169)
T ss_dssp             EEEESS--------CHHHHHHHHH-HCTTGGGCCSCEE--ECTTSHHHHH-HT--CB---CT---TSSBCEEEEEECTTS
T ss_pred             eecccc--------chhhhhhhcc-cccccccceEEEE--eccHHHHHHH-cC--CC---cc---CCccceeEEEEcCCC
Confidence            999986        5677777765 443    789999  6655543332 22  10   01   112335999999999


Q ss_pred             cEEEEeCCCC----CchHHHHHHHH
Q 030881          145 QVVDRYYPTT----SLLSLEHDIKK  165 (170)
Q Consensus       145 ~i~~~~~~~~----~~~~l~~~l~~  165 (170)
                      +|++.+.+..    +.+++.+.|++
T Consensus       142 ~I~~~~~~~~~~~~~~~evl~~l~a  166 (169)
T d2bmxa1         142 EIQFVSATAGSVGRNVDEVLRVLDA  166 (169)
T ss_dssp             BEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             EEEEEEEcCCCCCCCHHHHHHHHHH
Confidence            9999865433    33344444443

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.95  E-value=5.8e-27  Score=160.37  Aligned_cols=142  Identities=13%  Similarity=0.125  Sum_probs=105.4

Q ss_pred             cCCcccccceeeC----CCCCeecCCCCCCcEEEEEEecC-CCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881            7 QNPESIFDLSVKD----ARGHEVDLSTYKGKVLLIVNVAS-KCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus         7 ~~g~~~p~f~l~~----~~g~~~~l~~~~gk~~lv~f~~~-~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      ..|+++|+|++.+    .++.+++|++++||++||+||.. |||+|..+++.|++.+++|+++|+++++||.|       
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g~~vv~IS~D-------   74 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLGVEVYSVSTD-------   74 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTTEEEEEEESS-------
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccceEEEecccc-------
Confidence            4799999999986    34567999999999999999965 99999999999999999999999999999987       


Q ss_pred             CChHHHHHHHHh---hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC----
Q 030881           82 GSNDQIADFVCT---RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT----  154 (170)
Q Consensus        82 ~~~~~~~~~~~~---~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~----  154 (170)
                       +.+..++|.+.   .++.+||++  .|..+.... .|+.  ....  .+..   .|++||||++|+|++.+.+..    
T Consensus        75 -~~~~~~~~~~~~~~~~~~~fpll--~D~~~~v~~-~ygv--~~~~--~~~~---~r~tfvID~~G~I~~~~i~~~~~~r  143 (166)
T d1we0a1          75 -THFVHKAWHENSPAVGSIEYIMI--GDPSQTISR-QFDV--LNEE--TGLA---DRGTFIIDPDGVIQAIEINADGIGR  143 (166)
T ss_dssp             -CHHHHHHHHHSCHHHHTCCSEEE--ECTTCHHHH-HTTC--EETT--TTEE---CEEEEEECTTSBEEEEEEECTTSCC
T ss_pred             -cHHHHHHHhhhhhhhcccccccc--cCcccHHHH-HhCC--Cccc--cCcc---cceEEEECCCCcEEEEEEcCCCCCC
Confidence             66666777651   247889998  676654332 1211  1010  1112   348999999999999864432    


Q ss_pred             CchHHHHHHHHH
Q 030881          155 SLLSLEHDIKKL  166 (170)
Q Consensus       155 ~~~~l~~~l~~~  166 (170)
                      +.+++.+.|+.+
T Consensus       144 ~~~eil~~lkal  155 (166)
T d1we0a1         144 DASTLINKVKAA  155 (166)
T ss_dssp             CTTHHHHHHHHH
T ss_pred             CHHHHHHHHHhc
Confidence            445565555543

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.94  E-value=1.7e-27  Score=159.61  Aligned_cols=134  Identities=18%  Similarity=0.231  Sum_probs=104.6

Q ss_pred             cccccceeeCCCC--------CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCC
Q 030881           10 ESIFDLSVKDARG--------HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEP   81 (170)
Q Consensus        10 ~~~p~f~l~~~~g--------~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~   81 (170)
                      .++|+|++++.+|        ..+++++++||++||+||++||++|+.++|.++++.+.+   ++.+++|+.+.      
T Consensus         1 ~paP~~~lp~~~g~~~~~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~---~~~~~~i~~~~------   71 (144)
T d1knga_           1 RPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK---RFQLVGINYKD------   71 (144)
T ss_dssp             CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT---TSEEEEEEESC------
T ss_pred             CCCCCCCCCCCCCccccCCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc---CceeEEEEeee------
Confidence            3678888877766        568889999999999999999999999999999886654   58899998763      


Q ss_pred             CChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHH
Q 030881           82 GSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEH  161 (170)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~  161 (170)
                       +..+.+++.. +++..++.+. .|.++....   .           +++...|++++||++|+|++++.|..+.+++.+
T Consensus        72 -~~~~~~~~~~-~~~~~~~~~~-~d~~~~~~~---~-----------~~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~  134 (144)
T d1knga_          72 -AADNARRFLG-RYGNPFGRVG-VDANGRASI---E-----------WGVYGVPETFVVGREGTIVYKLVGPITPDNLRS  134 (144)
T ss_dssp             -CHHHHHHHHH-HHCCCCSEEE-EETTSHHHH---H-----------TTCCSSCEEEEECTTSBEEEEEESCCCHHHHHH
T ss_pred             -chHHHHHHHH-HcCCcccccc-ccccchhhh---h-----------cCccccceEEEEcCCCeEEEEEeCCCCHHHHHH
Confidence             6778888887 7788877542 454433221   1           234445599999999999999999888888888


Q ss_pred             HHHHHhcC
Q 030881          162 DIKKLLGL  169 (170)
Q Consensus       162 ~l~~~l~~  169 (170)
                      .|++.|++
T Consensus       135 ~i~~~l~k  142 (144)
T d1knga_         135 VLLPQMEK  142 (144)
T ss_dssp             THHHHHHH
T ss_pred             HHHHHHHH
Confidence            88777653

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.94  E-value=7.2e-27  Score=160.23  Aligned_cols=142  Identities=15%  Similarity=0.199  Sum_probs=105.1

Q ss_pred             ccCCcccccce----eeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            6 IQNPESIFDLS----VKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         6 ~~~g~~~p~f~----l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      +.+|++||+|+    |.|.+|+.++|++++||++||+|| ++||++|..+++.|++.+++++++|+.+++||.|      
T Consensus         3 ~kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~~~v~~is~d------   76 (167)
T d1e2ya_           3 AKLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEINTEVISCSCD------   76 (167)
T ss_dssp             CCTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             ccCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCceEEEeecCC------
Confidence            67899999999    668899999999999999999999 9999999999999999999999999999999986      


Q ss_pred             CCChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           81 PGSNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                        +.....++....      ....||++  .|..+.... .|..    .....|..   .|++||||++|+|++.+.+..
T Consensus        77 --~~~~~~~~~~~~~~~~~~~~~~~~~l--~d~~~~~~~-~y~v----~~~~~g~~---~r~tfvID~~G~Ir~~~~~~~  144 (167)
T d1e2ya_          77 --SEYSHLQWTSVDRKKGGLGPMAIPML--ADKTKAIAR-AYGV----LDEDSGVA---YRGVFIIDPNGKLRQIIINDM  144 (167)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCCCSSCEE--ECTTCHHHH-HHTC----EETTTTEE---CEEEEEECTTSBEEEEEEECT
T ss_pred             --cHHhHHHHHhhHHHhccccccccccc--ccchhHHHH-HcCC----CcccCCCc---eeEEEEECCCCEEEEEEEcCC
Confidence              666777776421      13567777  565443322 1211    00111112   348999999999998864433


Q ss_pred             ----CchHHHHHHHH
Q 030881          155 ----SLLSLEHDIKK  165 (170)
Q Consensus       155 ----~~~~l~~~l~~  165 (170)
                          +.+++.+.|++
T Consensus       145 ~~~~~~~evL~~l~a  159 (167)
T d1e2ya_         145 PIGRNVEEVIRLVEA  159 (167)
T ss_dssp             TBCCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHH
Confidence                33455555544

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.7e-26  Score=153.24  Aligned_cols=124  Identities=20%  Similarity=0.261  Sum_probs=94.1

Q ss_pred             eCCCCCeecCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcC
Q 030881           18 KDARGHEVDLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFK   96 (170)
Q Consensus        18 ~~~~g~~~~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~   96 (170)
                      .|..|+.++.+++ +||++||+|||+||++|+.++|.|+++.+    .++.+++++.+.       +......+.. +.+
T Consensus         5 ld~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~~~vi~i~~~~-------~~~~~~~~~~-~~~   72 (136)
T d1z5ye1           5 LDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QGIRVVGMNYKD-------DRQKAISWLK-ELG   72 (136)
T ss_dssp             SSSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TTCCEEEEEESC-------CHHHHHHHHH-HHC
T ss_pred             ccCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hhhhhccccccc-------chhhhHHHHH-HcC
Confidence            3556999999998 89999999999999999999999988754    468899999863       6677777776 556


Q ss_pred             CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881           97 SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus        97 ~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      ..++.+. .|..+....   .|           ++...|++||||++|+|++++.|..+.+++.+.|+++|+
T Consensus        73 ~~~~~~~-~d~~~~~~~---~~-----------~v~~~P~~~liD~~G~i~~~~~G~~~~~~l~~~i~~ll~  129 (136)
T d1z5ye1          73 NPYALSL-FDGDGMLGL---DL-----------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWEEEIKPLWE  129 (136)
T ss_dssp             CCCSEEE-EESSCHHHH---HH-----------TCCSBSEEEEECTTSCEEEEEESCCCHHHHHHHTHHHHH
T ss_pred             Cccceee-cccchhHHH---hc-----------ccCCcceEEEEcCCCEEEEEEEcCCCHHHHHHHHHHHHH
Confidence            6655332 455443221   22           233344999999999999999998888888777776654

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3.4e-26  Score=156.38  Aligned_cols=133  Identities=14%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..+..|+++|+|+|.+.+|+.++|++++||++||+|| +.|||+|..+++.|++++.++.  ++.+++||.|        
T Consensus        16 ~~~~vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d--------   85 (164)
T d1qxha_          16 SIPQAGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID--NTVVLCISAD--------   85 (164)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST--TEEEEEEESS--------
T ss_pred             CcCCCCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc--cceeeeEEcC--------
Confidence            4578999999999999999999999999999999998 6799999999999999998874  5999999986        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      ++...+++.. +++..++++.+.|....... .|+.... ..+..  ++ ..|++||||++|+|++.+..
T Consensus        86 ~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~-~ygv~~~-~~~~~--g~-~~ra~fvID~~G~I~y~~~~  149 (164)
T d1qxha_          86 LPFAQSRFCG-AEGLNNVITLSTFRNAEFLQ-AYGVAIA-DGPLK--GL-AARAVVVIDENDNVIFSQLV  149 (164)
T ss_dssp             CHHHHTTCCS-STTCTTEEEEECTTCHHHHH-HTTCBBC-SSTTT--TS-BCCEEEEECTTSBEEEEEEC
T ss_pred             CHHHHHHHHH-HhCCCcceeeccccchhhHH-hcCeEee-cCccc--Cc-ccCEEEEEcCCCEEEEEEEc
Confidence            6788888886 77889988854443322111 1111000 00111  12 23589999999999998544

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.93  E-value=3.6e-26  Score=159.74  Aligned_cols=142  Identities=17%  Similarity=0.178  Sum_probs=107.8

Q ss_pred             ccCCcccccce----eeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            6 IQNPESIFDLS----VKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         6 ~~~g~~~p~f~----l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      +..+.+||+|+    +.|.+|+.++|++++||++||+|| ++||++|..+++.+++++++|++.|+++++||.|      
T Consensus         3 ae~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g~~VlgIS~D------   76 (194)
T d1uula_           3 AEDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIGCEVLACSMD------   76 (194)
T ss_dssp             CCTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTTEEEEEEESS------
T ss_pred             cccCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCceEEEEEecC------
Confidence            56789999999    557788999999999999999999 8999999999999999999999999999999987      


Q ss_pred             CCChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC
Q 030881           81 PGSNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT  154 (170)
Q Consensus        81 ~~~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~  154 (170)
                        +....++|.+..      .+++||++  .|..+..... |+..    .+..+...   +++||||++|+|++.+....
T Consensus        77 --s~~s~~~~~~~~~~~~~~~~l~fpll--sD~~~~v~~~-ygv~----~~~~~~~~---R~tfvID~~G~I~~~~~~~~  144 (194)
T d1uula_          77 --SEYSHLAWTSIERKRGGLGQMNIPIL--ADKTKCIMKS-YGVL----KEEDGVAY---RGLFIIDPKQNLRQITVNDL  144 (194)
T ss_dssp             --CHHHHHHHHHSCGGGTCCCSCSSCEE--ECTTCHHHHH-HTCE----ETTTTEEC---EEEEEECTTSBEEEEEEECT
T ss_pred             --chhhhhhhhhhhhhhccccCCCccee--eCCcchHHHH-cCCe----eccCCceE---EEEEEECCCCeEEEEEEecC
Confidence              667777776521      25789999  6766654432 2211    11111223   38999999999999964333


Q ss_pred             ----CchHHHHHHHH
Q 030881          155 ----SLLSLEHDIKK  165 (170)
Q Consensus       155 ----~~~~l~~~l~~  165 (170)
                          +.+++.+.|++
T Consensus       145 ~~~r~~~E~Lr~l~a  159 (194)
T d1uula_         145 PVGRDVDEALRLVKA  159 (194)
T ss_dssp             TBCCCHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHH
Confidence                44455555544

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-25  Score=152.46  Aligned_cols=135  Identities=11%  Similarity=0.130  Sum_probs=104.2

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCC--CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTY--KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEE   80 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~--~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~   80 (170)
                      ..+.+|+++|+|+|.+.+|+.++|+++  +|+++|++|| ++|||+|..+++.|++.+++|++. +.+++||.|      
T Consensus         3 ~~L~vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~-~~~~~is~d------   75 (156)
T d2a4va1           3 NELEIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY-AAVFGLSAD------   75 (156)
T ss_dssp             TCCCTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT-CEEEEEESC------
T ss_pred             ccCCCCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc-cceeeeccc------
Confidence            457899999999999999999999998  5678888888 899999999999999999999764 678999976      


Q ss_pred             CCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHH
Q 030881           81 PGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSL  159 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l  159 (170)
                        +.+.+++|++ +++++||++  .|.++....   .|.....|.   .+++   ++++|+.||+|++++.+..+....
T Consensus        76 --~~~~~~~f~~-~~~l~f~~L--~D~~~~v~~---~ygv~~~~~---~~~~---r~~~i~~dg~i~~~~~~~~~~~~~  140 (156)
T d2a4va1          76 --SVTSQKKFQS-KQNLPYHLL--SDPKREFIG---LLGAKKTPL---SGSI---RSHFIFVDGKLKFKRVKISPEVSV  140 (156)
T ss_dssp             --CHHHHHHHHH-HHTCSSEEE--ECTTCHHHH---HHTCBSSSS---SCBC---CEEEEEETTEEEEEEESCCHHHHH
T ss_pred             --hhhhHHhhhc-ccCccceec--cchHHHHHH---HcCCCcccc---CCee---EEEEEEECCeEEEEEEEeCCCCCc
Confidence              7889999997 889999999  676654433   222222221   1122   456666899999998775543333

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.92  E-value=3.1e-25  Score=152.27  Aligned_cols=140  Identities=15%  Similarity=0.162  Sum_probs=103.3

Q ss_pred             cCCcccccceeeCCCCC-----eecCCCCCCc-EEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            7 QNPESIFDLSVKDARGH-----EVDLSTYKGK-VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~-----~~~l~~~~gk-~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      .+|++||+|++.+.+|.     .++|++++|| ++|++|| +.|||.|..+++.+++.+++++++|+++++||.|     
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~Vvgis~d-----   76 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKGFNVIGVSID-----   76 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTTEEEEEEESS-----
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCCeeEeccccc-----
Confidence            46999999999998873     6999999885 8999999 8999999999999999999999999999999986     


Q ss_pred             CCCChHHHHHHHHhhc-------CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           80 EPGSNDQIADFVCTRF-------KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~-------~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                         +.....+|.+ .+       +.+||++  .|..+.... .|+..   .+  .+.   ..|++||||++|+|++.+.+
T Consensus        77 ---~~~~~~~~~~-~~~~~~~~~~~~~~~l--~D~~~~v~~-~ygv~---~~--~~~---~~r~tfvID~~G~I~~~~~~  141 (170)
T d1zofa1          77 ---SEQVHFAWKN-TPVEKGGIGQVSFPMV--ADITKSISR-DYDVL---FE--EAI---ALRGAFLIDKNMKVRHAVIN  141 (170)
T ss_dssp             ---CHHHHHHHHT-SCGGGTCCCCCSSCEE--ECTTSHHHH-HTTCE---ET--TTE---ECEEEEEEETTTEEEEEEEE
T ss_pred             ---chhhHHHHHh-hhhhcccccCcccccc--cccccHHHH-HcCCC---cc--ccc---eeEEEEEEcCCCeEEEEEEe
Confidence               6677777764 33       5788888  565543222 12110   01  011   23489999999999987533


Q ss_pred             CC----CchHHHHHHHHH
Q 030881          153 TT----SLLSLEHDIKKL  166 (170)
Q Consensus       153 ~~----~~~~l~~~l~~~  166 (170)
                      ..    +.+++.+.|+++
T Consensus       142 ~~~~~~~~~eiL~~l~aL  159 (170)
T d1zofa1         142 DLPLGRNADEMLRMVDAL  159 (170)
T ss_dssp             SSSCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHh
Confidence            22    333444444443

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.92  E-value=4.3e-26  Score=152.73  Aligned_cols=120  Identities=16%  Similarity=0.238  Sum_probs=90.7

Q ss_pred             cCCcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhc-cCCcEEEEeecCCCCCCCCCChH
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYK-DQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      ..|+.+|.|++...+|.++++++++||++||+|||+||++|++++|.|+++++++. +.++.+++|+.|.       +.+
T Consensus         3 ~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~-------~~~   75 (144)
T d1o73a_           3 GLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDE-------NES   75 (144)
T ss_dssp             GGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SHH
T ss_pred             CcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhccCeEEEEEecch-------hHH
Confidence            45789999999999999999999999999999999999999999999999999995 4579999999873       677


Q ss_pred             HHHHHHHhhcC-CCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEE
Q 030881           86 QIADFVCTRFK-SEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDR  149 (170)
Q Consensus        86 ~~~~~~~~~~~-~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~  149 (170)
                      ...++.. +.. ..+|+    +..... ..+..     .     +++...|++||||+| |+|+..
T Consensus        76 ~~~~~~~-~~~~~~~~~----~~~~~~-~~l~~-----~-----y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_          76 DFHDYYG-KMPWLALPF----DQRSTV-SELGK-----T-----FGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HHHHHHT-TCSSEECCT----TCHHHH-HHHHH-----H-----HTCCSSSEEEEEETTTCCEEES
T ss_pred             HHHHHHH-hccccceee----eccchH-HHHHH-----H-----cCCCcCCEEEEEECCCCEEEee
Confidence            8888886 422 12221    111110 11111     1     234444599999998 899876

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=2.1e-25  Score=151.50  Aligned_cols=138  Identities=16%  Similarity=0.142  Sum_probs=103.2

Q ss_pred             cccccceeeC---CCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChH
Q 030881           10 ESIFDLSVKD---ARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSND   85 (170)
Q Consensus        10 ~~~p~f~l~~---~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~   85 (170)
                      .+||+|++++   .+|+.++|++++||++||+|| +.|||+|..+++.+++.++++.+.|+++++||.|        +..
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~~~vigIS~d--------~~~   72 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVNCEVVAVSVD--------SHF   72 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTTEEEEEEESS--------CHH
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCCceEEeccCc--------CHH
Confidence            3699999874   466789999999999999999 8999999999999999999999999999999987        778


Q ss_pred             HHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC----C
Q 030881           86 QIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT----S  155 (170)
Q Consensus        86 ~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~----~  155 (170)
                      ..++|++..      .+++||++  .|..+.... .|+  ....+  .|...   +++||||++|+|++.+.+..    +
T Consensus        73 ~~~~~~~~~~~~~~~~~~~f~ll--sD~~~~~~~-~yg--v~~~~--~g~~~---R~tfvID~~G~I~~~~i~~~~~~~~  142 (158)
T d1zyea1          73 SHLAWINTPRKNGGLGHMNIALL--SDLTKQISR-DYG--VLLEG--PGLAL---RGLFIIDPNGVIKHLSVNDLPVGRS  142 (158)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSEEE--ECTTSHHHH-HTT--CEETT--TTEEC---EEEEEECTTSBEEEEEEECTTCCCC
T ss_pred             HHHHHHhhhHhhccccccccccc--cccccHHHH-HHH--hcccc--CCccc---cEEEEECCCCEEEEEEEeCCCCCCC
Confidence            888888632      37789999  666654322 121  11111  11223   48999999999999864433    3


Q ss_pred             chHHHHHHHH
Q 030881          156 LLSLEHDIKK  165 (170)
Q Consensus       156 ~~~l~~~l~~  165 (170)
                      .+++.+.|++
T Consensus       143 ~~EiL~~lka  152 (158)
T d1zyea1         143 VEETLRLVKA  152 (158)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            3455555553

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.92  E-value=5.9e-25  Score=150.42  Aligned_cols=147  Identities=10%  Similarity=0.028  Sum_probs=95.6

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .+.+.|+++|+|+|.+.+|+.++|++++||++||+|| +.|||+|..+++.+++.   +.+.|+++++|+.|        
T Consensus        15 ~~p~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~---~~~~g~~vv~Is~d--------   83 (166)
T d1xvqa_          15 ELPAVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDER---AAASGATVLCVSKD--------   83 (166)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHH---HHHTTCEEEEEESS--------
T ss_pred             CCCCCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhh---cccccccccccccc--------
Confidence            4567999999999999999999999999999999999 56899999998887655   45568999999986        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC--CCchHHH
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT--TSLLSLE  160 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~--~~~~~l~  160 (170)
                      +....+++.+ .++..++.+. .+.... ....+.... ......|..   .|++||||++|+|++.+...  ....++.
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~-~~~~~g~~~-~~~~~~g~~---~ra~fvID~~G~I~y~~~~~~~~~~~~~d  156 (166)
T d1xvqa_          84 LPFAQKRFCG-AEGTENVMPA-SAFRDS-FGEDYGVTI-ADGPMAGLL---ARAIVVIGADGNVAYTELVPEIAQEPNYE  156 (166)
T ss_dssp             CHHHHTTCC-------CEEEE-ECTTSS-HHHHTTCBB-CSSTTTTSB---CSEEEEECTTSBEEEEEECSBTTCCCCHH
T ss_pred             hHHHHHHHHH-HhCCcccccc-cchhHH-HHHHhCeee-ccCcccCce---eeEEEEEeCCCEEEEEEEcCCCCCCCCHH
Confidence            6777778776 6677776652 222222 121111110 001111111   34899999999999875321  1222455


Q ss_pred             HHHHHHhc
Q 030881          161 HDIKKLLG  168 (170)
Q Consensus       161 ~~l~~~l~  168 (170)
                      +.|+.+-+
T Consensus       157 ~il~aL~a  164 (166)
T d1xvqa_         157 AALAALGA  164 (166)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            55554433

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.91  E-value=2.3e-24  Score=147.01  Aligned_cols=130  Identities=13%  Similarity=0.120  Sum_probs=96.4

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      +.+..|+++|+|+|.+.+|+.++|++++||++||.|| +.|||+|..+++.+++.+.+++  ++.+++||.|        
T Consensus        14 ~~l~vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~~~vv~Is~d--------   83 (163)
T d1psqa_          14 KQLQVGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--NTVVLTVSMD--------   83 (163)
T ss_dssp             CCCCTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--TEEEEEEESS--------
T ss_pred             CCCCCCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--ccceEEEEec--------
Confidence            4678999999999999999999999999999999999 6799999999999999888885  5999999986        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +....+++.. ..+..++.+...+.... ....|+.....      ..++ .+++||||++|+|++.+..
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ygv~~~~------~~~~-~Ra~fvID~~G~I~y~~~~  144 (163)
T d1psqa_          84 LPFAQKRWCG-AEGLDNAIMLSDYFDHS-FGRDYALLINE------WHLL-ARAVFVLDTDNTIRYVEYV  144 (163)
T ss_dssp             CHHHHHHHHH-HHTCTTSEEEECTTTCH-HHHHHTCBCTT------TCSB-CCEEEEECTTCBEEEEEEC
T ss_pred             cHHHHHHHHH-HcCCcceeeeccccchh-HHHhheeeccc------ccce-eEEEEEECCCCEEEEEEEc
Confidence            6778888886 55666655532222221 22222211111      1111 2378999999999998533

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.6e-25  Score=153.52  Aligned_cols=145  Identities=19%  Similarity=0.193  Sum_probs=109.2

Q ss_pred             ccccCCcccccceee---CCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCC
Q 030881            4 QFIQNPESIFDLSVK---DARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEE   79 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~---~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~   79 (170)
                      ..+.+|+++|+|+|.   +.+|..++|++++||++||+|| +.||+.|..++..|++.+++|++.|+++++||.|     
T Consensus         3 ~~~~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g~~vigIS~D-----   77 (197)
T d1qmva_           3 GNARIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLGCEVLGVSVD-----   77 (197)
T ss_dssp             TTBCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTTEEEEEEESS-----
T ss_pred             CCCcCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCCcEEEEEecC-----
Confidence            457899999999885   5677889999999999999999 8999999999999999999999999999999987     


Q ss_pred             CCCChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           80 EPGSNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                         +....++|....      .+++||++  .|..+..+. .|+..  ..  ..|...   +++||||++|+|++.+...
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~~va~-~ygv~--~~--~~g~~~---R~tfiID~~g~Ir~~~~~~  144 (197)
T d1qmva_          78 ---SQFTHLAWINTPRKEGGLGPLNIPLL--ADVTRRLSE-DYGVL--KT--DEGIAY---RGLFIIDGKGVLRQITVND  144 (197)
T ss_dssp             ---CHHHHHHHHTSCGGGTCCCSCSSCEE--ECTTCHHHH-HTTCE--ET--TTTEEC---EEEEEECTTSBEEEEEEEC
T ss_pred             ---CHHHHHhhhcchhhhcCcCCCccceE--eccchHHHH-HhCCC--cc--cCCeee---EEEEEECCCCcEEEEEecC
Confidence               677778887521      26789999  666555433 12211  01  111223   3899999999999984433


Q ss_pred             C----CchHHHHHHHHH
Q 030881          154 T----SLLSLEHDIKKL  166 (170)
Q Consensus       154 ~----~~~~l~~~l~~~  166 (170)
                      .    +.+++.+.|+++
T Consensus       145 ~~~~r~~~E~lr~l~al  161 (197)
T d1qmva_         145 LPVGRSVDEALRLVQAF  161 (197)
T ss_dssp             TTBCCCHHHHHHHHHHH
T ss_pred             CCcccCHHHHHHHHHhh
Confidence            3    444555555544

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.91  E-value=6.3e-24  Score=144.94  Aligned_cols=133  Identities=12%  Similarity=0.047  Sum_probs=97.7

Q ss_pred             ccccCCcccccceeeCCCCCeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            4 QFIQNPESIFDLSVKDARGHEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      .++.+|+++|+|+|.+.+|+.++|++++||++||+|| +.|||.|..+++.|++.+++++  ++.+++||.|        
T Consensus        14 ~~p~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~~~vi~iS~d--------   83 (164)
T d1q98a_          14 HFPQVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--NTIVLCISAD--------   83 (164)
T ss_dssp             CCCCTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--TEEEEEEESS--------
T ss_pred             CCCCCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--cceEEeecCC--------
Confidence            4578999999999999999999999999999999999 5689999999999999999995  5999999986        


Q ss_pred             ChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCC
Q 030881           83 SNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        83 ~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      +.+..++|.+ .++..+..+. .+.........|.... ......  ++ ..|++||||++|+|++....
T Consensus        84 ~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~~--g~-~~Ra~fvID~~G~I~y~~~~  147 (164)
T d1q98a_          84 LPFAQARFCG-AEGIENAKTV-STFRNHALHSQLGVDI-QTGPLA--GL-TSRAVIVLDEQNNVLHSQLV  147 (164)
T ss_dssp             CHHHHTTCTT-TTTCTTEEEE-ECTTCTHHHHHTTCEE-CSSTTT--TS-BCCEEEEECTTSBEEEEEEC
T ss_pred             cHHHHHHHHH-HhCCcccccc-ccccchhHHHhhceec-ccCccc--cC-cccEEEEECCCCEEEEEEEC
Confidence            7788888886 6677654442 2221211111111110 111111  12 13589999999999998543

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.8e-24  Score=144.36  Aligned_cols=149  Identities=15%  Similarity=0.172  Sum_probs=107.7

Q ss_pred             cceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhccCC----cEEEEeecCCCCCCCCCChHHHH
Q 030881           14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKDQG----LEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus        14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~~~----v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      +|+|.|.+|+++++++++||++||+||+|||+ .|....+.+.++++.+.+.+    +.++.++.+.    +.+..+...
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   77 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP----ERDTKEAIA   77 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCT----TTCCHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCC----CcccHHHHH
Confidence            79999999999999999999999999999998 69999999999998876553    5666666653    345677777


Q ss_pred             HHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCc----cCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHH
Q 030881           89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGI----FGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIK  164 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~  164 (170)
                      ++.. .++.++..+.  ............+.....+..    ..+.+-|.+++|||||+|+|+..+.+..+++++.+.|+
T Consensus        78 ~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~~~~~~~i~~~I~  154 (160)
T d1wp0a1          78 NYVK-EFSPKLVGLT--GTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIA  154 (160)
T ss_dssp             HHHH-TTCTTCEEEE--CCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEETTCCHHHHHHHHH
T ss_pred             HHHh-hcCCCccccc--CchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence            7775 6677666552  211111111111111111111    11456677899999999999999988889999999999


Q ss_pred             HHhcC
Q 030881          165 KLLGL  169 (170)
Q Consensus       165 ~~l~~  169 (170)
                      ++|++
T Consensus       155 ~~lk~  159 (160)
T d1wp0a1         155 THMRP  159 (160)
T ss_dssp             HHHTT
T ss_pred             HHHhc
Confidence            99975

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.90  E-value=3.4e-24  Score=148.53  Aligned_cols=141  Identities=14%  Similarity=0.170  Sum_probs=106.3

Q ss_pred             cCCcccccceeeC-CCC--CeecCCCCCCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            7 QNPESIFDLSVKD-ARG--HEVDLSTYKGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         7 ~~g~~~p~f~l~~-~~g--~~~~l~~~~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..|+++|+|++.. .+|  ..++|++++||++||+|| +.|||.|..+++.|++.+++|++.|+++++||.|        
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~~~v~gIS~D--------   73 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLGVDVYSVSTD--------   73 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhcccccEEEEecccc--------
Confidence            4799999999876 355  478999999999999999 7889999999999999999999999999999987        


Q ss_pred             ChHHHHHHHHhhc----CCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC----
Q 030881           83 SNDQIADFVCTRF----KSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT----  154 (170)
Q Consensus        83 ~~~~~~~~~~~~~----~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~----  154 (170)
                      +....++|++ .+    +++||++  .|..+..... |+....    ..|..   .+++||||++|+|++.+....    
T Consensus        74 s~~sh~~f~~-~~~~~~~~~fpll--sD~~~~v~~~-yGv~~~----~~g~~---~r~tfiID~~G~Ir~~~v~~~~~~r  142 (186)
T d1n8ja_          74 THFTHKAWHS-SSETIAKIKYAMI--GDPTGALTRN-FDNMRE----DEGLA---DRATFVVDPQGIIQAIEVTAEGIGR  142 (186)
T ss_dssp             CHHHHHHHHH-HCTTGGGCCSEEE--ECTTSHHHHH-TTCEET----TTTEE---CEEEEEECTTSBEEEEEEECTTBCC
T ss_pred             CHHHHHHHhc-ccccccccccccc--ccHHHHHHHH-hCCCcc----cCCcc---eeeEEEECchheEEEEeecCCCccc
Confidence            7788888886 44    3789999  6766554432 211110    01112   348999999999999853332    


Q ss_pred             CchHHHHHHHHH
Q 030881          155 SLLSLEHDIKKL  166 (170)
Q Consensus       155 ~~~~l~~~l~~~  166 (170)
                      +.+++.+.|+++
T Consensus       143 ~~~eiL~~lkaL  154 (186)
T d1n8ja_         143 DASDLLRKIKAA  154 (186)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            445555555544

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.89  E-value=4.2e-24  Score=152.83  Aligned_cols=142  Identities=18%  Similarity=0.294  Sum_probs=101.9

Q ss_pred             cCCcccccceeeCCCCCeecCCCC---CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            7 QNPESIFDLSVKDARGHEVDLSTY---KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g~~~~l~~~---~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      ..|+++|+|++.+.+|. +.+.++   +||++||+|| ++|||+|..+++.|++.+++|+++|+++++||+|        
T Consensus         2 lIGd~aPdF~l~t~~G~-i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g~~vigiS~D--------   72 (237)
T d2zcta1           2 LIGERFPEMEVTTDHGV-IKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLGVDLIGLSVD--------   72 (237)
T ss_dssp             CTTSBCCCEEEEETTEE-EEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTTEEEEEEESS--------
T ss_pred             CCCCCCCCeEEEcCCCC-EEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCCcceeeccCC--------
Confidence            37999999999999995 666664   8999999999 8999999999999999999999999999999997        


Q ss_pred             ChHHHHHHHHh-----hcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC---
Q 030881           83 SNDQIADFVCT-----RFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT---  154 (170)
Q Consensus        83 ~~~~~~~~~~~-----~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~---  154 (170)
                      +....+++.+.     ..+++||++  .|..+..+. .|+..   .++..+..++   ++||||++|+|++.+....   
T Consensus        73 s~~sh~~w~~~~~~~~~~~l~fpll--sD~~~~vak-~yGv~---~~~~~~~~~R---atFIIDpdG~Ir~~~~~~~~~g  143 (237)
T d2zcta1          73 SVFSHIKWKEWIERHIGVRIPFPII--ADPQGTVAR-RLGLL---HAESATHTVR---GVFIVDARGVIRTMLYYPMELG  143 (237)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCSCEE--ECGGGHHHH-HTTCC-------CCTTCC---EEEEECTTSBEEEEEECCTTBC
T ss_pred             cHHHHHHHhhhhhhhcccccccccc--cCcchHHHH-HcCCc---ccccccccee---eeEEECCCCEEEEEEEeCCCCC
Confidence            45555555431     356889999  665544332 12210   1111112344   9999999999999854433   


Q ss_pred             -CchHHHHHHHHH
Q 030881          155 -SLLSLEHDIKKL  166 (170)
Q Consensus       155 -~~~~l~~~l~~~  166 (170)
                       +.+++.+.|+.+
T Consensus       144 R~~dEiLr~l~aL  156 (237)
T d2zcta1         144 RLVDEILRIVKAL  156 (237)
T ss_dssp             CCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence             444555555443

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.89  E-value=1.9e-24  Score=144.61  Aligned_cols=114  Identities=17%  Similarity=0.244  Sum_probs=84.7

Q ss_pred             cceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           14 DLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        14 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      .+.+.+.+|..+++++++||+++|+|||+||++|+.++|.|+++++++++. ++++++|+.|.       +.++..++.+
T Consensus        10 ~~~~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~-------~~~~~~~~~~   82 (144)
T d1i5ga_          10 STNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDE-------SAEDFKDYYA   82 (144)
T ss_dssp             CSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCS-------SHHHHHHHHT
T ss_pred             chhhccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccc-------cHHHHHHHHH
Confidence            355667778899999999999999999999999999999999999999875 69999999983       7888888887


Q ss_pred             hhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEE
Q 030881           93 TRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDR  149 (170)
Q Consensus        93 ~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~  149 (170)
                       +++..++.+  .+..+.  ..+..     .     +++...|+++|||++ |+|+..
T Consensus        83 -~~~~~~~~~--~d~~~~--~~l~~-----~-----y~v~~iPt~~lid~~~G~vi~~  125 (144)
T d1i5ga_          83 -KMPWLALPF--EDRKGM--EFLTT-----G-----FDVKSIPTLVGVEADSGNIITT  125 (144)
T ss_dssp             -TCSSEECCT--TCHHHH--HHHHH-----H-----TTCCSSSEEEEEETTTCCEEES
T ss_pred             -hCCCCceee--EChHHH--HHHHH-----H-----CCCCCcCEEEEEeCCCCEEEee
Confidence             555443333  111110  01111     1     234444599999996 898764

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.89  E-value=1.2e-24  Score=145.42  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=91.1

Q ss_pred             CcccccceeeCCCCCeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC-CcEEEEeecCCCCCCCCCChHHH
Q 030881            9 PESIFDLSVKDARGHEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ-GLEILAFPCNQFGEEEPGSNDQI   87 (170)
Q Consensus         9 g~~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~-~v~~v~is~d~~~~~~~~~~~~~   87 (170)
                      ++.+|+|++.+.+|.++++++++||++||+||++||++|..+++.|.++++++... ++.++.|+.|.       +.++.
T Consensus         3 ~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~-------~~~~~   75 (144)
T d1o8xa_           3 DKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE-------EEDGF   75 (144)
T ss_dssp             GGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCC-------SHHHH
T ss_pred             CCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhcccccccccccccccc-------cHHHH
Confidence            67899999999999999999999999999999999999999999999999999655 79999999873       66777


Q ss_pred             HHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCC-CcEEEE
Q 030881           88 ADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKN-GQVVDR  149 (170)
Q Consensus        88 ~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~-G~i~~~  149 (170)
                      ..+........+++.. .+..    ..+..     .     +++...|++||||++ |+|+..
T Consensus        76 ~~~~~~~~~~~~~~~~-~d~~----~~l~~-----~-----y~v~~~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_          76 AGYFAKMPWLAVPFAQ-SEAV----QKLSK-----H-----FNVESIPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             HHHHTTCSSEECCGGG-HHHH----HHHHH-----H-----TTCCSSSEEEEEETTTCCEEES
T ss_pred             HHHHhhccccceeeec-ccch----hhHHH-----H-----cCCCcCCEEEEEeCCCCEEEEE
Confidence            7777534344444431 0100    01111     1     345555699999998 788765

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.3e-23  Score=147.79  Aligned_cols=146  Identities=11%  Similarity=0.128  Sum_probs=106.3

Q ss_pred             ccCCcccccceeeCCCCCeecCCCCCC-cEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGS   83 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~   83 (170)
                      +..|+++|+|++.+.+|+ ++|++++| |++||+|| +.|||+|..++..|++.+++|+++|+++++||.|        +
T Consensus         1 L~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g~~v~giS~D--------s   71 (220)
T d1prxa_           1 LLLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRNVKLIALSID--------S   71 (220)
T ss_dssp             CCTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------C
T ss_pred             CCCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhcccceeeccccc--------c
Confidence            468999999999999996 99999977 89999999 6899999999999999999999999999999997        5


Q ss_pred             hHHHHHHHHh---------hcCCCCCceEEeecCCCCchhHHHHhHhccC--CccCCccccCceeEEECCCCcEEEEeCC
Q 030881           84 NDQIADFVCT---------RFKSEFPIFEKIDVNGEHASPLYKLLKSGKW--GIFGDDIQWNFAKFLVDKNGQVVDRYYP  152 (170)
Q Consensus        84 ~~~~~~~~~~---------~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~i~~~p~~~lid~~G~i~~~~~~  152 (170)
                      .+...+|.+.         ..+++||++  .|..+..+.. |+.......  ...+..++   ++||||++|+|++....
T Consensus        72 ~~sh~~~~~~~~~~~~~~~~~~l~fpll--sD~~~~va~~-ygv~~~~~~~~~~~~~~~R---atFIID~~g~Ir~~~~~  145 (220)
T d1prxa_          72 VEDHLAWSKDINAYNSEEPTEKLPFPII--DDRNRELAIL-LGMLDPAEKDEKGMPVTAR---VVFVFGPDKKLKLSILY  145 (220)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCSCCSSCEE--ECTTCHHHHH-TTSSCSCTTCSSSCCTTCC---EEEEECTTSBEEEEEEC
T ss_pred             ccchhhhhhhhhhccccccccCcccccc--cCcccHHHHH-hCCccccccccccceeeeE---EEEEEcCccceeEEEEe
Confidence            6666666542         135789999  6766554432 222111111  01112344   89999999999999533


Q ss_pred             CC----CchHHHHHHHHH
Q 030881          153 TT----SLLSLEHDIKKL  166 (170)
Q Consensus       153 ~~----~~~~l~~~l~~~  166 (170)
                      ..    +.+++.+.|+++
T Consensus       146 ~~~~gR~~dEiLr~l~al  163 (220)
T d1prxa_         146 PATTGRNFDEILRVVISL  163 (220)
T ss_dssp             CTTBCCCHHHHHHHHHHH
T ss_pred             cCCcccchHHHHHHHHHH
Confidence            33    444455555443

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.88  E-value=2e-22  Score=138.13  Aligned_cols=136  Identities=21%  Similarity=0.193  Sum_probs=100.5

Q ss_pred             ccccceeeC----CCCCeecCCCCCC-cEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCCh
Q 030881           11 SIFDLSVKD----ARGHEVDLSTYKG-KVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSN   84 (170)
Q Consensus        11 ~~p~f~l~~----~~g~~~~l~~~~g-k~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~   84 (170)
                      +||+|+|.+    .++++++|++++| |++||+|| +.|||.|..+++.+++.+++|++.|+.+++||.|        +.
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g~~vigIS~D--------~~   72 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERNVELLGCSVD--------SK   72 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTTEEEEEEESS--------CH
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCCeeEecccCC--------cH
Confidence            589999984    4556899999998 89999999 7999999999999999999999999999999987        67


Q ss_pred             HHHHHHHHhh-------cCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCC---
Q 030881           85 DQIADFVCTR-------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTT---  154 (170)
Q Consensus        85 ~~~~~~~~~~-------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~---  154 (170)
                      ...++|.+ +       .+..||++  .|..+..... |+..    . ..+..   .+++||||++|+|++.+.+..   
T Consensus        73 ~~~~~~~~-~~~~~~~~~~~~f~ll--sD~~~~~~~~-ygv~----~-~~~~~---~R~tfiId~~G~I~~~~~~~~~~~  140 (170)
T d2h01a1          73 FTHLAWKK-TPLSQGGIGNIKHTLI--SDISKSIARS-YDVL----F-NESVA---LRAFVLIDKQGVVQHLLVNNLALG  140 (170)
T ss_dssp             HHHHHHHT-SCGGGTCCCSCSSEEE--ECTTSHHHHH-TTCE----E-TTTEE---CCEEEEECTTSBEEEEEEGGGSSG
T ss_pred             HHHHhHhh-hhhhhccccccCCcee--EcCccHHHHH-hCCc----c-ccccc---eeeeEEEcCCCeEEEEEEecCCCC
Confidence            77788875 3       34778888  6665543321 1110    0 00112   349999999999999864433   


Q ss_pred             -CchHHHHHHHHH
Q 030881          155 -SLLSLEHDIKKL  166 (170)
Q Consensus       155 -~~~~l~~~l~~~  166 (170)
                       +.+++.+.|+++
T Consensus       141 ~~~~eil~~l~~l  153 (170)
T d2h01a1         141 RSVDEILRLIDAL  153 (170)
T ss_dssp             GGHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHh
Confidence             233455555543

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.87  E-value=1.9e-22  Score=142.62  Aligned_cols=147  Identities=16%  Similarity=0.271  Sum_probs=106.7

Q ss_pred             ccCCcccccceeeCCCCC-eecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCC
Q 030881            6 IQNPESIFDLSVKDARGH-EVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPG   82 (170)
Q Consensus         6 ~~~g~~~p~f~l~~~~g~-~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~   82 (170)
                      +..|+++|+|++.+.++. .++++++ +||++||+|| +.|||.|..++..+++.+++|+++|+++++||.|        
T Consensus         2 i~iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~~~vigiS~D--------   73 (219)
T d1xcca_           2 YHLGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLNCKLIGFSCN--------   73 (219)
T ss_dssp             CCTTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTTEEEEEEESS--------
T ss_pred             CcCCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccceEEEeecCc--------
Confidence            468999999999876543 6899996 8999999999 7999999999999999999999999999999997        


Q ss_pred             ChHHHHHHHHhh------cCCCCCceEEeecCCCCchhHHHHhHhccCCccC--CccccCceeEEECCCCcEEEEeC-CC
Q 030881           83 SNDQIADFVCTR------FKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFG--DDIQWNFAKFLVDKNGQVVDRYY-PT  153 (170)
Q Consensus        83 ~~~~~~~~~~~~------~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~i~~~p~~~lid~~G~i~~~~~-~~  153 (170)
                      +.....+|.+..      .+++||++  .|..+..+. .|+..........+  ...+   ++||||++|+|++... ..
T Consensus        74 s~~sh~~w~~~~~~~~~~~~l~fpll--sD~~~~va~-~ygv~~~~~~~~~~~~~~~R---~tFiIDp~g~Ir~~~~~~~  147 (219)
T d1xcca_          74 SKESHDKWIEDIKYYGKLNKWEIPIV--CDESRELAN-KLKIMDEQEKDITGLPLTCR---CLFFISPEKKIKATVLYPA  147 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTCSCCCCCEE--ECTTSHHHH-HHTCEEEEEECTTSCEEECE---EEEEECTTSBEEEEEEECT
T ss_pred             cHhHHhHHhhhhHhhcccCCCCcccc--cccccHHHH-HhCCcccccccCcccceeee---eeEEEcCcceEEEEEEeCC
Confidence            677777777532      36899999  676655443 22221111111111  2234   8999999999998742 22


Q ss_pred             ---CCchHHHHHHHHH
Q 030881          154 ---TSLLSLEHDIKKL  166 (170)
Q Consensus       154 ---~~~~~l~~~l~~~  166 (170)
                         .+.+++.+.|+++
T Consensus       148 ~~gr~~~EiLr~l~aL  163 (219)
T d1xcca_         148 TTGRNAHEILRVLKSL  163 (219)
T ss_dssp             TBCCCHHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHH
Confidence               2445555555443

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=7.1e-22  Score=134.10  Aligned_cols=149  Identities=15%  Similarity=0.133  Sum_probs=92.8

Q ss_pred             ccceeeCCCCCeecCCCCCCcEEEEEEecCCCC-CChhhHHHHHHHHHHhcc---CCcEEEEeecCCCCCCCCCChHHHH
Q 030881           13 FDLSVKDARGHEVDLSTYKGKVLLIVNVASKCG-MTNSNYIELSQLYDKYKD---QGLEILAFPCNQFGEEEPGSNDQIA   88 (170)
Q Consensus        13 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~-~C~~~~~~l~~~~~~~~~---~~v~~v~is~d~~~~~~~~~~~~~~   88 (170)
                      ++|+|.|.+|+++++++++||++||+||++||+ .|......+..+...+..   ..+.++.++.+.    ..++.+...
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   82 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP----ARDSPAVLK   82 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT----TTCCHHHHH
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeecccc----ccCchhhhh
Confidence            589999999999999999999999999999997 566666776665555543   346777776653    234455555


Q ss_pred             HHHHhhcCCCCCceEEeecCCCCchhHHHHh-----HhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881           89 DFVCTRFKSEFPIFEKIDVNGEHASPLYKLL-----KSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus        89 ~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                      .+.. ..+..+....  ............+.     .....+..++.+.|+|++||||++|+|+..+.+..+++.+.+.|
T Consensus        83 ~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~~~~~~~~~~~~~~I  159 (169)
T d2b7ka1          83 EYLS-DFHPSILGLT--GTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKI  159 (169)
T ss_dssp             HHHT-TSCTTCEEEE--CCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECTTCCTTHHHHHH
T ss_pred             hhhc-cccccccccc--cchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEEECCCCCHHHHHHHH
Confidence            5543 4444444331  11000000000000     00001112256888999999999999999998888887755555


Q ss_pred             HHHhc
Q 030881          164 KKLLG  168 (170)
Q Consensus       164 ~~~l~  168 (170)
                      .+.|+
T Consensus       160 ~e~ik  164 (169)
T d2b7ka1         160 VEHVK  164 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-16  Score=106.97  Aligned_cols=133  Identities=16%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             ccCCcccccceeeC-CCCCeecCCCC-CCcEEEEEEe-cCCCCCCh-hhHHHHHHHHHHhccCCc-EEEEeecCCCCCCC
Q 030881            6 IQNPESIFDLSVKD-ARGHEVDLSTY-KGKVLLIVNV-ASKCGMTN-SNYIELSQLYDKYKDQGL-EILAFPCNQFGEEE   80 (170)
Q Consensus         6 ~~~g~~~p~f~l~~-~~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~v-~~v~is~d~~~~~~   80 (170)
                      +.+|+++|+|+|.+ .+|+.++++++ +||++||+|+ +.|||.|. .+++.+.+.++.+.++|. .++.++.+      
T Consensus         3 ikVGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g~~~i~~~s~~------   76 (161)
T d1hd2a_           3 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVN------   76 (161)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESS------
T ss_pred             CCCCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcCCeEEEEEecC------
Confidence            67899999999986 56899999995 8999999999 78999995 578889999999999986 45667775      


Q ss_pred             CCChHHHHHHHHhhcCC--CCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC
Q 030881           81 PGSNDQIADFVCTRFKS--EFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY  151 (170)
Q Consensus        81 ~~~~~~~~~~~~~~~~~--~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~  151 (170)
                        +....+.+.+ ..+.  .+|++  .|..+..+.. ++..........+..+... ++++|+.||+|++.+.
T Consensus        77 --~~~~~~~~~~-~~~~~~~~~ll--sD~~~~~a~~-~g~~~~~~~~g~~~~~~s~-r~~~I~~~G~I~~~~v  142 (161)
T d1hd2a_          77 --DAFVTGEWGR-AHKAEGKVRLL--ADPTGAFGKE-TDLLLDDSLVSIFGNRRLK-RFSMVVQDGIVKALNV  142 (161)
T ss_dssp             --CHHHHHHHHH-HTTCTTTCEEE--ECTTCHHHHH-HTCBCCSTTHHHHSSCCBC-CEEEEEETTEEEEEEE
T ss_pred             --chhhhhhhhh-hcccccccccc--cCCcceeeee-eeeeeccccCccccccEEe-EEEEEECCCEEEEEEE
Confidence              5566666665 3344  46777  6766554432 2111000000000111111 5677777999999864

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.64  E-value=7.6e-17  Score=102.53  Aligned_cols=92  Identities=22%  Similarity=0.317  Sum_probs=68.8

Q ss_pred             cCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881           26 DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI  105 (170)
Q Consensus        26 ~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (170)
                      .+.+..||++||+||++||++|+...|.++++.+++++. +.++.|+.|.       .+    +.++ +++         
T Consensus        19 ~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~-~~~~~i~~d~-------~~----~l~~-~~~---------   76 (111)
T d1xwaa_          19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN-VVVLKVDVDE-------CE----DIAM-EYN---------   76 (111)
T ss_dssp             HHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CH----HHHH-HTT---------
T ss_pred             HHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc-eEEEEEEeec-------Cc----chhh-cCC---------
Confidence            355557999999999999999999999999999999865 8888998762       22    2222 322         


Q ss_pred             ecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHH
Q 030881          106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKL  166 (170)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~  166 (170)
                                               |...|+++++ ++|+++.++.|. .++++++.|++-
T Consensus        77 -------------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~I~~~  110 (111)
T d1xwaa_          77 -------------------------ISSMPTFVFL-KNGVKVEEFAGA-NAKRLEDVIKAN  110 (111)
T ss_dssp             -------------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHT
T ss_pred             -------------------------CccccEEEEE-ECCEEEEEEeCC-CHHHHHHHHHhc
Confidence                                     2222376666 799999999885 556787777654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.62  E-value=4e-16  Score=98.14  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|....|.+.++..+++++ +.++.|+++.       . ..+   +. ++++             
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~vd~~~-------~-~~~---~~-~~~V-------------   69 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK-VTVAKLNVDE-------N-PET---TS-QFGI-------------   69 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-CEEEEEETTT-------C-HHH---HH-HTTC-------------
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc-eEEEEEECCC-------C-ccc---HH-HCCc-------------
Confidence            4689999999999999999999999999999865 9999998862       2 222   22 3322             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           ...||++++ ++|+.+.++.|..+.+++.+.|+++|+
T Consensus        70 ---------------------~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~L~  105 (105)
T d1nw2a_          70 ---------------------MSIPTLILF-KGGEPVKQLIGYQPKEQLEAQLADVLQ  105 (105)
T ss_dssp             ---------------------CBSSEEEEE-ETTEEEEEEESCCCHHHHHHHTTTTCC
T ss_pred             ---------------------ceeeEEEEE-ECCEEEEEEECCCCHHHHHHHHHHHhC
Confidence                                 222376777 689999999999899999999998875

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1e-16  Score=102.74  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCc
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPI  101 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~  101 (170)
                      ..+++.+||++||+||++||++|+...|.+   .++.+.+.+  +.++.+.++.       ..+...++++ +++     
T Consensus        15 ~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~-------~~~~~~~l~~-~~~-----   79 (117)
T d2fwha1          15 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALAD--TVLLQANVTA-------NDAQDVALLK-HLN-----   79 (117)
T ss_dssp             HHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTTT--SEEEEEECTT-------CCHHHHHHHH-HTT-----
T ss_pred             HHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhccc--eEEEeccccc-------chhHHHHHHh-hhe-----
Confidence            445666899999999999999999999887   455555533  6677776542       3334444443 322     


Q ss_pred             eEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEE--EeCCCCCchHHHHHHHH
Q 030881          102 FEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVD--RYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       102 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~--~~~~~~~~~~l~~~l~~  165 (170)
                                                   |.+.|+++++|++|+++.  +..|..+++++.+.|++
T Consensus        80 -----------------------------v~~~Pt~~~~~~~G~~~~~~~~~G~~~~~~~~~~l~~  116 (117)
T d2fwha1          80 -----------------------------VLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD  116 (117)
T ss_dssp             -----------------------------CCSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred             -----------------------------hhhceEEEEEeCCCcEEecccccccCCHHHHHHHHhc
Confidence                                         333349999999999875  46788899989888864

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.61  E-value=3.1e-16  Score=106.09  Aligned_cols=135  Identities=15%  Similarity=0.080  Sum_probs=91.5

Q ss_pred             ccccCCcccccceee----CCCCCeecCCCC-CCcEEEEEEe-cCCCCCCh-hhHHHHHHHHHHhccCC-cEEEEeecCC
Q 030881            4 QFIQNPESIFDLSVK----DARGHEVDLSTY-KGKVLLIVNV-ASKCGMTN-SNYIELSQLYDKYKDQG-LEILAFPCNQ   75 (170)
Q Consensus         4 ~~~~~g~~~p~f~l~----~~~g~~~~l~~~-~gk~~lv~f~-~~~C~~C~-~~~~~l~~~~~~~~~~~-v~~v~is~d~   75 (170)
                      ..+.+|+++|+|+|.    +..+.+++++++ +||++||+|+ +.|++.|. +..+...+..+.+.++| .+++.||+| 
T Consensus         2 ~~l~vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~~~v~~isvd-   80 (162)
T d1tp9a1           2 APIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVN-   80 (162)
T ss_dssp             CCCCTTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESS-
T ss_pred             CCCCCCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCCcceeeeecc-
Confidence            348999999999996    344578999985 9999999999 78999996 45677788888888776 578889886 


Q ss_pred             CCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeC
Q 030881           76 FGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYY  151 (170)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~  151 (170)
                             +......|.. ..+...++....|..+.... .+++.....+  .|.+....-.+|||| ||+|++.+.
T Consensus        81 -------~~~~~~~~~~-~~~~~~~~~~lsD~~~~~~~-~~g~~~~~~~--~g~g~~~~R~tfiId-dg~I~~~~v  144 (162)
T d1tp9a1          81 -------DPFVMKAWAK-SYPENKHVKFLADGSATYTH-ALGLELDLQE--KGLGTRSRRFALLVD-DLKVKAANI  144 (162)
T ss_dssp             -------CHHHHHHHHH-TCTTCSSEEEEECTTSHHHH-HTTCEEEETT--TTSEEEECCEEEEEE-TTEEEEEEE
T ss_pred             -------chhhhhhhhh-hcccccccccccchhhHHHh-hhhhcccccc--ccCCcEEEEEEEEEE-CCEEEEEEE
Confidence                   6778888876 55655444333666554332 1221111111  001111122789999 899999864

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.60  E-value=3.7e-15  Score=94.06  Aligned_cols=90  Identities=20%  Similarity=0.157  Sum_probs=71.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++..++.+. +.++.|++|.       .+ +   .++ ++++             
T Consensus        19 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~d~-------~~-~---l~~-~~~I-------------   72 (108)
T d1thxa_          19 AEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR-LKVVKLEIDP-------NP-T---TVK-KYKV-------------   72 (108)
T ss_dssp             CSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT-CEEEEEESTT-------CH-H---HHH-HTTC-------------
T ss_pred             CCCcEEEEEECCCCCCccccchHHHHHHHhcCCc-ceeceecccc-------cH-H---HHH-Hhcc-------------
Confidence            3589999999999999999999999999999765 8999998862       22 2   222 3322             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           ...||++++. +|+++.++.|..+.+++.+.|++.|+
T Consensus        73 ---------------------~~~Pt~~~~~-~g~~v~~~~G~~~~~~l~~~i~~~Ln  108 (108)
T d1thxa_          73 ---------------------EGVPALRLVK-GEQILDSTEGVISKDKLLSFLDTHLN  108 (108)
T ss_dssp             ---------------------CSSSEEEEEE-TTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ---------------------cCCCEEEEEE-CCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence                                 2223877875 89999999999999999999998774

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=5.6e-15  Score=93.20  Aligned_cols=90  Identities=20%  Similarity=0.197  Sum_probs=70.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++..++..+ +.++.++.|.       ++    ..+. +++              
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~-~~~~~vd~d~-------~~----~l~~-~~~--------------   71 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NP----GTAP-KYG--------------   71 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-EEEEEEETTT-------CT----THHH-HTT--------------
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc-eeeeeccccc-------hh----hHHH-HhC--------------
Confidence            4689999999999999999999999999988655 8888888762       21    1221 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          |...||++++ ++|+++.++.|..+.+++.+.|++.|+
T Consensus        72 --------------------v~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~Ls  108 (108)
T d2trxa_          72 --------------------IRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA  108 (108)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             --------------------CCcEEEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHhcC
Confidence                                2223376666 689999999999899999999998874

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.5e-15  Score=94.46  Aligned_cols=87  Identities=20%  Similarity=0.260  Sum_probs=67.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+|++||+||++||++|+...|.+.++.+++.+  +.++.|+.|.       ++    +.+. +++              
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~d~-------~~----~~~~-~~~--------------   70 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN--VIFLEVDVDD-------CQ----DVAS-ECE--------------   70 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc--ceeeeccccc-------CH----hHHH-HcC--------------
Confidence            468999999999999999999999999999865  7888888762       22    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          |...||++++ ++|+.+.++.|. +++++++.|+++|
T Consensus        71 --------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~~~l  105 (105)
T d2ifqa1          71 --------------------VKCMPTFQFF-KKGQKVGEFSGA-NKEKLEATINELV  105 (105)
T ss_dssp             --------------------CCBSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHC
T ss_pred             --------------------ceEEEEEEEE-ECCEEEEEEeCC-CHHHHHHHHHhhC
Confidence                                2222386776 799999999985 7788999998875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.58  E-value=2.6e-15  Score=94.14  Aligned_cols=89  Identities=15%  Similarity=0.227  Sum_probs=70.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++.+++.++ +.++.|+.|.       ++    +.++ +++              
T Consensus        16 ~~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~-~~~~~v~~d~-------~~----~l~~-~~~--------------   68 (104)
T d1fb6a_          16 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK-IAVYKLNTDE-------AP----GIAT-QYN--------------   68 (104)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH----HHHH-HTT--------------
T ss_pred             CCCcEEEEEEcCccCCccccCchhHHHHHhhcCc-cceeEEeccc-------ch----hhhh-hcc--------------
Confidence            3689999999999999999999999999999776 7888888762       22    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          |...||++++ ++|+.+.++.|..+.+++.+.|++.|
T Consensus        69 --------------------V~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~~L  104 (104)
T d1fb6a_          69 --------------------IRSIPTVLFF-KNGERKESIIGAVPKSTLTDSIEKYL  104 (104)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEEECCCHHHHHHHHHHHC
T ss_pred             --------------------eeeeeEEEEE-EcCeEEEEEeCCCCHHHHHHHHHHhC
Confidence                                2222376666 68999999999999999999999875

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.58  E-value=5.5e-15  Score=93.09  Aligned_cols=90  Identities=13%  Similarity=0.196  Sum_probs=71.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+|++||+||++||++|....|.+.++..++.+. +.++.|++|.       .+ +   .++ ++++             
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~vd~d~-------~~-~---l~~-~~~V-------------   71 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK-LKCVKLNTDE-------SP-N---VAS-EYGI-------------   71 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-CEEEEEETTT-------CH-H---HHH-HHTC-------------
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc-ceEEEEeccc-------ch-h---HHH-Hhcc-------------
Confidence            4689999999999999999999999999988765 8899998862       22 2   222 3222             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           ...|+++++. +|+.+.++.|..+.+++.+.|++.|+
T Consensus        72 ---------------------~~~Pt~~~~~-~G~~v~~~~G~~~~~~l~~~i~~~L~  107 (107)
T d1dbya_          72 ---------------------RSIPTIMVFK-GGKKCETIIGAVPKATIVQTVEKYLN  107 (107)
T ss_dssp             ---------------------CSSCEEEEES-SSSEEEEEESCCCHHHHHHHHHHHCC
T ss_pred             ---------------------cceEEEEEEE-CCeEEEEEeCCCCHHHHHHHHHHhhC
Confidence                                 2223877774 89999999999999999999999874

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=5e-15  Score=94.39  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++||+||++||++|+...|.+.++.+.+++  +.++.|+.|.       .+    +.++ +++              
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~--~~~~~vd~~~-------~~----~l~~-~~~--------------   78 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN--VLFLKVDTDE-------LK----SVAS-DWA--------------   78 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS--EEEEEEETTT-------SH----HHHH-HTT--------------
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhcccccc--cceeEEEeee-------ce----eecc-ccc--------------
Confidence            479999999999999999999999999999864  8899998762       22    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                          |...||++++ ++|+++.++.|. +++++.+.|++.|+
T Consensus        79 --------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~la  114 (114)
T d1xfla_          79 --------------------IQAMPTFMFL-KEGKILDKVVGA-KKDELQSTIAKHLA  114 (114)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHCC
T ss_pred             --------------------eeeeEEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHhhC
Confidence                                2223376777 799999999884 67889999988764

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.56  E-value=5.2e-15  Score=94.15  Aligned_cols=89  Identities=7%  Similarity=0.150  Sum_probs=69.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++.+++.  ++.++.|+.|.       .    .+.++ +++              
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~vd~d~-------~----~~l~~-~~~--------------   76 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP--TVKFAKVDADN-------N----SEIVS-KCR--------------   76 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT--TSEEEEEETTT-------C----HHHHH-HTT--------------
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc--ccccccccccc-------c----hhhHH-Hcc--------------
Confidence            57899999999999999999999999999986  49999999862       2    12222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          |...||++++ ++|+.+.++.|. +++.+.+.|+++|++
T Consensus        77 --------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~l~~~ike  113 (113)
T d1r26a_          77 --------------------VLQLPTFIIA-RSGKMLGHVIGA-NPGMLRQKLRDIIKD  113 (113)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHHHC
T ss_pred             --------------------ccCCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHHhcC
Confidence                                2222376665 789999999984 678899999999863

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.6e-15  Score=93.47  Aligned_cols=89  Identities=19%  Similarity=0.209  Sum_probs=68.9

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ..+|+++|+||++||++|+...|.+.++.+++++  +.++.|+.|.        ..++.   . +++             
T Consensus        19 ~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~--~~f~~vd~d~--------~~~l~---~-~~~-------------   71 (107)
T d1gh2a_          19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ--AVFLEVDVHQ--------CQGTA---A-TNN-------------   71 (107)
T ss_dssp             TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT--------SHHHH---H-HTT-------------
T ss_pred             CCCCEEEEEEECCCCCCccccchhhhcccccccc--cccccccccc--------chhhh---h-hcC-------------
Confidence            3578999999999999999999999999999864  8999998762        22222   1 322             


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           |...|+++++ ++|+.+.++.| .+++.+++.|++.|+
T Consensus        72 ---------------------v~~~Pt~~~~-~~G~~v~~~~G-~~~~~l~~~i~k~le  107 (107)
T d1gh2a_          72 ---------------------ISATPTFQFF-RNKVRIDQYQG-ADAVGLEEKIKQHLE  107 (107)
T ss_dssp             ---------------------CCSSSEEEEE-ETTEEEEEEES-SCHHHHHHHHHHHHC
T ss_pred             ---------------------ceeceEEEEE-ECCEEEEEEeC-CCHHHHHHHHHHhhC
Confidence                                 2223376666 79999999999 488889999998774

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.55  E-value=2e-14  Score=90.42  Aligned_cols=95  Identities=7%  Similarity=0.013  Sum_probs=69.1

Q ss_pred             CCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc---CCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceE
Q 030881           27 LSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD---QGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFE  103 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  103 (170)
                      +.+..++.+|+.||++||++|+...|.+.++..+...   ..+.++.|+.+.       .+    +.++ +++       
T Consensus        10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-------~~----~l~~-~~~-------   70 (107)
T d1a8la2          10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-------YP----EWAD-QYN-------   70 (107)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-------CH----HHHH-HTT-------
T ss_pred             HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-------cc----cccc-ccc-------
Confidence            3445567778889999999999999999999776432   247777777652       11    2222 322       


Q ss_pred             EeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          104 KIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       104 ~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                                 |...||+ ++.++|+++.++.|..+.+.+.+.|+++|+
T Consensus        71 ---------------------------V~~vPTi-~i~~~G~~~~~~~G~~~~~~~~~~i~~al~  107 (107)
T d1a8la2          71 ---------------------------VMAVPKI-VIQVNGEDRVEFEGAYPEKMFLEKLLSALS  107 (107)
T ss_dssp             ---------------------------CCSSCEE-EEEETTEEEEEEESCCCHHHHHHHHHHHHC
T ss_pred             ---------------------------cccceEE-EEEeCCeEEEEEECCCCHHHHHHHHHHhhC
Confidence                                       2233474 567899999999999999999999998874

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.51  E-value=4.6e-14  Score=90.42  Aligned_cols=92  Identities=11%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNG  109 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~  109 (170)
                      ..++++++.||++|||+|+...|.|.++.+++.+..+.++.|+.|           +-.+.++ ++++            
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~d-----------~~~~l~~-~~~V------------   83 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVAVADLE-----------QSEAIGD-RFNV------------   83 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSCCEEEEECHH-----------HHHHHHH-TTTC------------
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCceEEEEEECC-----------CCHHHHH-hcCc------------
Confidence            356899999999999999999999999999998866888888643           3334443 4333            


Q ss_pred             CCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          110 EHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                            ...|+++++ ++|+.+.++.|..+.+++.+.|+.+|.
T Consensus        84 ----------------------~~~Pt~~~~-~~G~~v~~~~G~~~~~~l~~~i~~lLd  119 (119)
T d2es7a1          84 ----------------------RRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVD  119 (119)
T ss_dssp             ----------------------CSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC
T ss_pred             ----------------------CcceEEEEE-EcCeEEEEeeCCCCHHHHHHHHHHHhC
Confidence                                  223387777 799999999999999999999999874

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.51  E-value=4.1e-14  Score=89.76  Aligned_cols=89  Identities=15%  Similarity=0.101  Sum_probs=68.5

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+|++||+||++||++|+...|.+.++..+++++ +.++.|++|.       .+    +.++ ++++             
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~d~-------~~----~l~~-~~~v-------------   76 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK-VIFLKVDVDA-------VA----AVAE-AAGI-------------   76 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT-SEEEEEETTT-------TH----HHHH-HHTC-------------
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhcccce-EEEEEeeccc-------cc----cccc-cccc-------------
Confidence            5789999999999999999999999999999764 9999999862       22    2222 3221             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                        ..+   ||++++ ++|+.+.++.|. +.+++.+.|++...
T Consensus        77 ------------------~~~---Pt~~~~-~~G~~v~~~~G~-~~~~l~~~i~k~~a  111 (112)
T d1ep7a_          77 ------------------TAM---PTFHVY-KDGVKADDLVGA-SQDKLKALVAKHAA  111 (112)
T ss_dssp             ------------------CBS---SEEEEE-ETTEEEEEEESC-CHHHHHHHHHHHHC
T ss_pred             ------------------cCC---CEEEEE-ECCEEEEEEeCc-CHHHHHHHHHHHhC
Confidence                              122   376666 699999999884 78889999888764

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=7e-14  Score=91.05  Aligned_cols=92  Identities=13%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|.||++|||+|....|.|.++.+++.+..+.+..|+.|           +-.+.++ +|++             
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d-----------~~~~la~-~~~V-------------   89 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE-----------QSEAIGD-RFGV-------------   89 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH-----------HHHHHHH-HHTC-------------
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCcceeEEEEec-----------CCHHHHH-hhcc-------------
Confidence            45799999999999999999999999999998877777788653           3333333 4332             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                           ...||++++ ++|+.+..+.|..+.+++.+.|+.++..
T Consensus        90 ---------------------~~~PT~~~~-~~G~~v~~~~G~~~~~~l~~~i~~ll~~  126 (132)
T d2hfda1          90 ---------------------FRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEP  126 (132)
T ss_dssp             ---------------------CSCCEEEEE-ETTEEEEEECCCSCHHHHHHHHHHHHSC
T ss_pred             ---------------------CcceeEEEE-EcCcEeeeecCCCCHHHHHHHHHHHhCc
Confidence                                 222377777 7999999999999999999999999863

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.48  E-value=4.8e-14  Score=89.42  Aligned_cols=88  Identities=18%  Similarity=0.206  Sum_probs=66.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++.+++.+  +.++.|+.+.       ...++   ++ ++++             
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~--v~~~~vd~~~-------~~~~l---~~-~~~V-------------   77 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD--VIFLKLDCNQ-------ENKTL---AK-ELGI-------------   77 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEECSS-------TTHHH---HH-HHCC-------------
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc--ceeecccccc-------cchhh---Hh-heee-------------
Confidence            458999999999999999999999999999864  8899998752       11222   22 3222             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                           ...|+++++ ++|+++.++.|. .++++.+.|+++.
T Consensus        78 ---------------------~~~Pt~~~~-k~G~~v~~~~G~-~~~~l~e~i~~~~  111 (112)
T d1f9ma_          78 ---------------------RVVPTFKIL-KENSVVGEVTGA-KYDKLLEAIQAAR  111 (112)
T ss_dssp             ---------------------SSSSEEEEE-ETTEEEEEEESS-CHHHHHHHHHHHH
T ss_pred             ---------------------ccCCEEEEE-ECCEEEEEEeCC-CHHHHHHHHHHcc
Confidence                                 122387777 799999999985 6678888887753

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.47  E-value=1.5e-13  Score=87.20  Aligned_cols=87  Identities=15%  Similarity=0.198  Sum_probs=66.2

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+|++||+||++||++|+...|.+.++.+++.+  +.++.|+.|.       .+ +   .+. ++++             
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~vd~d~-------~~-~---l~~-~~~I-------------   77 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN--VTFLKVDVDE-------LK-A---VAE-EWNV-------------   77 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS--EEEEEEETTT-------CH-H---HHH-HHHC-------------
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCCC--ceEEeeeeec-------cc-c---ccc-cCee-------------
Confidence            579999999999999999999999999999854  8899998762       22 2   222 2211             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                        ..+   ||++++ ++|+.+.++.| .++++|.+.|++..
T Consensus        78 ------------------~~~---Pt~~~~-k~G~~v~~~~G-~~~~~l~~~i~k~a  111 (113)
T d1ti3a_          78 ------------------EAM---PTFIFL-KDGKLVDKTVG-ADKDGLPTLVAKHA  111 (113)
T ss_dssp             ------------------SST---TEEEEE-ETTEEEEEEEC-CCTTHHHHHHHHHH
T ss_pred             ------------------ccc---ceEEEE-ECCEEEEEEcC-CCHHHHHHHHHHHh
Confidence                              122   376676 59999999988 47788999888764

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=6.1e-14  Score=94.70  Aligned_cols=133  Identities=16%  Similarity=0.194  Sum_probs=85.0

Q ss_pred             cCCcccccceeeCCCC---CeecCCCC-CCcEEEEEEe-cCCCCCChhhHHHHHHHHH-HhccCCc-EEEEeecCCCCCC
Q 030881            7 QNPESIFDLSVKDARG---HEVDLSTY-KGKVLLIVNV-ASKCGMTNSNYIELSQLYD-KYKDQGL-EILAFPCNQFGEE   79 (170)
Q Consensus         7 ~~g~~~p~f~l~~~~g---~~~~l~~~-~gk~~lv~f~-~~~C~~C~~~~~~l~~~~~-~~~~~~v-~~v~is~d~~~~~   79 (170)
                      ..|+++|+|++....|   +.++++++ +||++||+|+ +.++|.|..+...+..... .+..+++ .++.++.+     
T Consensus         2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~~~vv~~~s~-----   76 (163)
T d1nm3a2           2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVN-----   76 (163)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESS-----
T ss_pred             CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcccceeeeecC-----
Confidence            3699999999998766   47899996 9999999888 7899999999877665543 3333332 34444443     


Q ss_pred             CCCChHHHHHHHHhhcCCCCCceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCC
Q 030881           80 EPGSNDQIADFVCTRFKSEFPIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPT  153 (170)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~  153 (170)
                         +......+.+......++++  .|..+..... +++....  ...|.+......+|||| ||+|++.+...
T Consensus        77 ---d~~~~~a~~~~~~~~~~~ll--sD~~~~~~~~-~g~~~~~--~~~g~g~~s~R~~~Iid-dG~I~~~~v~~  141 (163)
T d1nm3a2          77 ---DTFVMNAWKEDEKSENISFI--PDGNGEFTEG-MGMLVGK--EDLGFGKRSWRYSMLVK-NGVVEKMFIEP  141 (163)
T ss_dssp             ---CHHHHHHHHHHTTCTTSEEE--ECTTSHHHHH-TTCEEEC--TTTTCCEEECCEEEEEE-TTEEEEEEECC
T ss_pred             ---CHHHHHHHhhhhccCceeee--ccCChHHHHH-hhhhccc--cccccccccceEEEEEe-CCEEEEEEEec
Confidence               45566666655667788888  6655443321 2211111  11111122333789998 99999986543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.46  E-value=3.3e-16  Score=106.40  Aligned_cols=116  Identities=9%  Similarity=0.034  Sum_probs=77.8

Q ss_pred             cCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEe
Q 030881           26 DLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKI  105 (170)
Q Consensus        26 ~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  105 (170)
                      .+.+++++++++.||++|||+|+.++|.|+++++.+++  +.+..|+.|.       +.+.+.+|.. +.+..+|.+...
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~--~~~~~i~~d~-------~~~~~~~~~~-~~~~~~p~~~~~  117 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN--IELAIISKGR-------AEDDLRQRLA-LERIAIPLVLVL  117 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT--EEEEEECHHH-------HHHHTTTTTT-CSSCCSSEEEEE
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC--CcEEEEECcc-------CHHHHHHHHH-hccccccceeec
Confidence            35667899999999999999999999999999999875  5666666542       4555556654 556777776444


Q ss_pred             ecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          106 DVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       106 d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                      |.......                ....-|++++++++|.++..+.|..+.+.+.+ |..+|+
T Consensus       118 d~~~~~~~----------------~~~~~P~~~~~~~~~~~~~~~~G~~~~~~~~e-il~ii~  163 (166)
T d1z6na1         118 DEEFNLLG----------------RFVERPQAVLDGGPQALAAYKAGDYLEHAIGD-VLAIIE  163 (166)
T ss_dssp             CTTCCEEE----------------EEESSCHHHHHHCHHHHHHHHTTTTHHHHHHH-HHHHHH
T ss_pred             Cccchhcc----------------cccccchhheecccceeeeeccccccHHHHHH-HHHHhc
Confidence            43322111                11122377888888888777777665554544 444443

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.46  E-value=1.1e-13  Score=88.19  Aligned_cols=89  Identities=13%  Similarity=0.081  Sum_probs=65.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|+...|.+.++..+++.. +.++.+...       ++.+...++.+ +++              
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-v~~v~~~~~-------~~~~~~~~~~~-~~~--------------   81 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-IYFINSEEP-------SQLNDLQAFRS-RYG--------------   81 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-CEEEETTCG-------GGHHHHHHHHH-HHT--------------
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-hhhheeecc-------ccccccccccc-ccc--------------
Confidence            5789999999999999999999999999988654 555544321       24445555554 432              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDI  163 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l  163 (170)
                                          |...||++++ ++|+++.++.|..+.+++.+.|
T Consensus        82 --------------------V~~~PTli~~-~~gk~~~~~~G~~~~~el~~fl  113 (115)
T d1zmaa1          82 --------------------IPTVPGFVHI-TDGQINVRCDSSMSAQEIKDFA  113 (115)
T ss_dssp             --------------------CCSSCEEEEE-ETTEEEEECCTTCCHHHHHHHH
T ss_pred             --------------------cccccEEEEE-ECCEEEEEEcCCCCHHHHHHHH
Confidence                                3333487777 5899999999998888888776

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.42  E-value=3.8e-13  Score=83.90  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .+++++|+||++||++|....|.+.++.+++++  +.++.++.|.       .+    +.++ +++              
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~--~~~~~vd~d~-------~~----~~~~-~~~--------------   68 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK--MVFIKVDVDE-------VS----EVTE-KEN--------------   68 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT--SEEEEEETTT-------TH----HHHH-HTT--------------
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhcccc--eEEEeecccc-------Cc----ceee-eee--------------
Confidence            468999999999999999999999999999865  7888888762       22    2222 322              


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHH
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKK  165 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~  165 (170)
                                          |...||++++ ++|+.+.++.|. +.+++.+.|++
T Consensus        69 --------------------V~~~Pt~i~~-k~G~~v~~~~G~-~~~~l~~~i~k  101 (103)
T d1syra_          69 --------------------ITSMPTFKVY-KNGSSVDTLLGA-NDSALKQLIEK  101 (103)
T ss_dssp             --------------------CCSSSEEEEE-ETTEEEEEEESC-CHHHHHHHHHT
T ss_pred             --------------------eecceEEEEE-ECCEEEEEEeCc-CHHHHHHHHHh
Confidence                                2222375555 689999999884 56677777765

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.40  E-value=3.3e-13  Score=81.22  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=60.6

Q ss_pred             CcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCCC
Q 030881           32 GKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGEH  111 (170)
Q Consensus        32 gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~~  111 (170)
                      +|+.|++||++||++|+...|.+.++.+.+.+. +.++.+..|.       .+ ++   ++ +                 
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~-~~~~~~~~d~-------~~-~l---a~-~-----------------   51 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA-VEVEYINVME-------NP-QK---AM-E-----------------   51 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS-EEEEEEESSS-------SC-CT---TT-S-----------------
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc-cccccccccc-------cc-cc---cc-c-----------------
Confidence            588999999999999999999999999998654 7777777652       00 01   11 1                 


Q ss_pred             chhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          112 ASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                       ++|...|| ++++++|+    +.|..+.+++.+.|++.|
T Consensus        52 -----------------~~V~~~Pt-~~i~~~g~----~~G~~~~~~l~~~i~~~L   85 (85)
T d1fo5a_          52 -----------------YGIMAVPT-IVINGDVE----FIGAPTKEALVEAIKKRL   85 (85)
T ss_dssp             -----------------TTTCCSSE-EEETTEEE----CCSSSSSHHHHHHHHHHC
T ss_pred             -----------------CCceEeeE-EEEECCcE----EECCCCHHHHHHHHHhcC
Confidence                             12333347 46777876    457778889999998765

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.32  E-value=2.7e-12  Score=77.13  Aligned_cols=39  Identities=8%  Similarity=0.133  Sum_probs=34.6

Q ss_pred             EEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           35 LLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        35 ~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|..||++||++|+...|.++++.+++.++ +.++.|++|
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~~~-v~~~~vd~d   42 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDK-IDVEKIDIM   42 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHCSS-CCEEEECTT
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccccc-ccccccccc
Confidence            456699999999999999999999999764 999999876

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=5.5e-12  Score=80.50  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=67.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++.++|.||++||++|+...|.+.++...+++.++.+..|+++.       ..    +.+. ++++             
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~-------~~----~l~~-~~~v-------------   80 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTE-------NQ----DLCM-EHNI-------------   80 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTT-------CH----HHHH-HTTC-------------
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcccceeeeeeeccc-------hH----HHHH-Hhcc-------------
Confidence            568999999999999999999999999999987779999998862       22    2332 3322             


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcE--EEEeCCCCCchHHHHHHHHHhc
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV--VDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i--~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                        .++|   +++++ ++|+.  ...+.|..+.+++.+.|++..+
T Consensus        81 ------------------~~~P---ti~~f-~~g~~~~~~~y~g~~~~~~l~~fi~k~~~  118 (119)
T d2b5ea4          81 ------------------PGFP---SLKIF-KNSDVNNSIDYEGPRTAEAIVQFMIKQSQ  118 (119)
T ss_dssp             ------------------CSSS---EEEEE-ETTCTTCEEECCSCCSHHHHHHHHHHHTS
T ss_pred             ------------------ccCC---eEEEE-ECCEEeeeEEecCCCCHHHHHHHHHHhhC
Confidence                              1222   76776 45533  3457788888999999988654

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.4e-12  Score=85.34  Aligned_cols=43  Identities=14%  Similarity=-0.042  Sum_probs=39.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .+|++||.||++||++|....|.+.++.+++++. +.++.|++|
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~-v~~~~VDvd   63 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF-AVIYLVDIT   63 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETT
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhhcc-ceEEEeecc
Confidence            4689999999999999999999999999999765 899999886

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.9e-12  Score=82.73  Aligned_cols=47  Identities=9%  Similarity=0.038  Sum_probs=41.8

Q ss_pred             CCCCCCcEEEEEEecC-------CCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           27 LSTYKGKVLLIVNVAS-------KCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        27 l~~~~gk~~lv~f~~~-------~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +++.+||+++|+|||+       ||++|+...|.++++.+.++++ +.++.|+++
T Consensus        16 l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~-~~~~~vdv~   69 (119)
T d1woua_          16 VEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG-CVFIYCQVG   69 (119)
T ss_dssp             HHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT-EEEEEEECC
T ss_pred             HHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc-eEEEEEECC
Confidence            4556899999999996       9999999999999999998754 999999986

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.7e-11  Score=78.19  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=64.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC--cEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG--LEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~--v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      .+|.+||.||++||++|+...|.+.++.+.+.+.+  +.++.|+.+.       ..    ..+. +++            
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~~----~l~~-~~~------------   78 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATE-------ES----DLAQ-QYG------------   78 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTT-------CC----SSHH-HHT------------
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeecccccc-------ch----hHHH-HhC------------
Confidence            57999999999999999999999999999997653  7777777652       11    1111 211            


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCc--EEEEeCCCCCchHHHHHHHHHhc
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQ--VVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~--i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                            |...||++++. +|+  ....+.|..+.+++.+.|++.+.
T Consensus        79 ----------------------i~~~Pt~~~~~-~G~~~~~~~~~g~~~~~~l~~fi~~~~~  117 (120)
T d1meka_          79 ----------------------VRGYPTIKFFR-NGDTASPKEYTAGREADDIVNWLKKRTG  117 (120)
T ss_dssp             ----------------------CCSSSEEEEEE-SSCSSSCEECCCCSSHHHHHHHHHTTSC
T ss_pred             ----------------------CccCCeEEEEE-CCeEeeeEEecCCCCHHHHHHHHHHhhC
Confidence                                  22223776663 443  34557888888899999988764

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=5.3e-13  Score=87.16  Aligned_cols=43  Identities=12%  Similarity=0.183  Sum_probs=31.0

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc-CCcEEEEee
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD-QGLEILAFP   72 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~-~~v~~v~is   72 (170)
                      ..||+++|+||++||++|+.+.+.+.+..+..+. ..+.++.|+
T Consensus        23 ~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd   66 (135)
T d1sena_          23 ASGLPLMVIIHKSWCGACKALKPKFAESTEISELSHNFVMVNLE   66 (135)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEE
T ss_pred             HcCCcEEEEEEecCCCCceecchhhhhhHHHHHhcCCcEEEeCC
Confidence            3699999999999999999999998755433221 235554444

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.19  E-value=3.3e-11  Score=73.90  Aligned_cols=44  Identities=9%  Similarity=0.003  Sum_probs=38.2

Q ss_pred             CCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           29 TYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        29 ~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|.+.++.|+++|||+|+...|.++++...+.+  +.+..++.+
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~~--i~~~~vd~~   55 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPR--IKHTAIDGG   55 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCTT--EEEEEEETT
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCCc--eEEEEEecc
Confidence            35678889999999999999999999999988654  899999876

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.9e-10  Score=74.28  Aligned_cols=92  Identities=12%  Similarity=0.129  Sum_probs=63.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHH---HHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIEL---SQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDV  107 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~  107 (170)
                      .+|++||+|+++||++|+.....+   .++.+.+++ .+.++.++.+         .++..++.+ +|++          
T Consensus        41 ~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~-~fV~~~v~~~---------~~e~~~~~~-~y~v----------   99 (147)
T d2dlxa1          41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHD---------SEEGQRYIQ-FYKL----------   99 (147)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESS---------SHHHHHHHH-HHTC----------
T ss_pred             cCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhh-heeEeeeccc---------chhhhhhhh-heec----------
Confidence            689999999999999999876544   334444433 3888888764         234455554 4322          


Q ss_pred             CCCCchhHHHHhHhccCCccCCccccCceeEEECC-CCcEEEEeCCCCCchHHHHHHHHHhc
Q 030881          108 NGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK-NGQVVDRYYPTTSLLSLEHDIKKLLG  168 (170)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~-~G~i~~~~~~~~~~~~l~~~l~~~l~  168 (170)
                                           .++   |++++||| .|++++.+. ..+++++.+.|+++|.
T Consensus       100 ---------------------~~~---Pti~~idp~~ge~v~~~~-~~~~~~fl~~L~~fl~  136 (147)
T d2dlxa1         100 ---------------------GDF---PYVSILDPRTGQKLVEWH-QLDVSSFLDQVTGFLG  136 (147)
T ss_dssp             ---------------------CSS---SEEEEECTTTCCCCEEES-SCCHHHHHHHHHHHHH
T ss_pred             ---------------------Cce---eEEEEEeCCCCeEecccC-CCCHHHHHHHHHHHHh
Confidence                                 123   38899998 588887664 4788999999988875

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.04  E-value=8.9e-10  Score=69.46  Aligned_cols=34  Identities=24%  Similarity=0.217  Sum_probs=31.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ   64 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~   64 (170)
                      .++++||.||++||++|+...|.+.++.+.+...
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~   52 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS   52 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhcc
Confidence            4689999999999999999999999999999765

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.04  E-value=5.9e-10  Score=71.29  Aligned_cols=91  Identities=13%  Similarity=0.074  Sum_probs=62.5

Q ss_pred             CCcEEEEEEecCCCCCC------hhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEE
Q 030881           31 KGKVLLIVNVASKCGMT------NSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEK  104 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C------~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  104 (170)
                      +++.++|.||++||+.|      ....+.+..+...+.+.++.+..|+++.       .    .+.+. ++++.      
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~-------~----~~l~~-~~~I~------   88 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEK-------D----AAVAK-KLGLT------   88 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTT-------S----HHHHH-TTTCC------
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeec-------c----cchhh-ccccc------
Confidence            46789999999999864      3333445555566666779999998752       1    22333 43331      


Q ss_pred             eecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          105 IDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       105 ~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                                  ..||++++. +|+.+ .|.|..+.+.+.+.|.++++.
T Consensus        89 ----------------------------~yPTi~~f~-~g~~~-~y~G~r~~~~l~~fi~~~l~~  123 (124)
T d1a8ya1          89 ----------------------------EEDSIYVFK-EDEVI-EYDGEFSADTLVEFLLDVLED  123 (124)
T ss_dssp             ----------------------------STTCEEEEE-SSSEE-ECCSCCSHHHHHHHHHHHHSC
T ss_pred             ----------------------------cCCcEEEec-cCccE-EeeCCCCHHHHHHHHHHhcCC
Confidence                                        122766774 67765 578999999999999998875

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=5.3e-11  Score=77.93  Aligned_cols=44  Identities=20%  Similarity=0.279  Sum_probs=35.9

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .++.+||.||++||++|+...|.+.++.+.+++.+..+..+.+|
T Consensus        29 ~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d   72 (140)
T d2b5ea1          29 PKKDVLVLYYAPWCGHCKRLAPTYQELADTYANATSDVLIAKLD   72 (140)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEE
T ss_pred             CCCCEEEEEEeccCcccchhHHHHHHHHHHHhccccceEEEeee
Confidence            46899999999999999999999999999987665444444443

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=2e-09  Score=68.63  Aligned_cols=96  Identities=11%  Similarity=0.011  Sum_probs=62.3

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccC--CcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQ--GLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVN  108 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~--~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~  108 (170)
                      +.+.+||.||++||++|+.  |++.++.+++.+.  .+.+..|.++++..      ..-.+.+. +++++.         
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~------~~n~~l~~-~~~i~~---------   79 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE------LENKALGD-RYKVDD---------   79 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT------CTTHHHHH-HTTCCT---------
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc------ccCHHHHH-Hhhccc---------
Confidence            5689999999999999994  8999999887543  47888888764211      12223332 443320         


Q ss_pred             CCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE--EEEeCCCCCchHHHHHHHHHh
Q 030881          109 GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV--VDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i--~~~~~~~~~~~~l~~~l~~~l  167 (170)
                                          .++   ||++++...+..  ...+.|..+.+++.+.|++-.
T Consensus        80 --------------------~~~---PTi~~f~~g~~~~~~~~~~g~rt~~~l~~fv~~~~  117 (122)
T d2c0ga2          80 --------------------KNF---PSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANT  117 (122)
T ss_dssp             --------------------TSC---CEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHS
T ss_pred             --------------------CCC---CcEEEEeCCcccccccccCCCCCHHHHHHHHHHhc
Confidence                                012   266777655443  334567778888888887654

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.96  E-value=2.2e-09  Score=72.40  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=84.0

Q ss_pred             CCcccccceee----------CCCC-----CeecCCC-CCCcEEEEEEe-cCCCCCChh-hHHHHHHHHHHh-ccCCc-E
Q 030881            8 NPESIFDLSVK----------DARG-----HEVDLST-YKGKVLLIVNV-ASKCGMTNS-NYIELSQLYDKY-KDQGL-E   67 (170)
Q Consensus         8 ~g~~~p~f~l~----------~~~g-----~~~~l~~-~~gk~~lv~f~-~~~C~~C~~-~~~~l~~~~~~~-~~~~v-~   67 (170)
                      .|+.+|+.++.          +.+|     .++++++ ++||.+||.+. +.+.|.|.. .+|.+.+.++++ +++|+ +
T Consensus         2 ~~d~iP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd~   81 (179)
T d1xiya1           2 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFDD   81 (179)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCSE
T ss_pred             CCCcCCCeEEEEEecccccccccCCCCCCceEeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCce
Confidence            57888988763          3444     3466777 48877777666 789999976 599999999998 57787 7


Q ss_pred             EEEeecCCCCCCCCCChHHHHHHHHhhcCCCC-CceEEeecCCCCchhHHHHhHhccCCccCCccccCceeEEECCCCcE
Q 030881           68 ILAFPCNQFGEEEPGSNDQIADFVCTRFKSEF-PIFEKIDVNGEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQV  146 (170)
Q Consensus        68 ~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i  146 (170)
                      ++.||+|        ++-.++.|.+ ..+... .++  .|.++..... +++... .+ ..|.+.......+||+ ||+|
T Consensus        82 I~~iSvn--------D~fv~~aW~~-~~~~~~I~~l--sD~~g~f~k~-lg~~~d-~~-~~g~G~Rs~R~a~iid-dg~I  146 (179)
T d1xiya1          82 IYCITNN--------DIYVLKSWFK-SMDIKKIKYI--SDGNSSFTDS-MNMLVD-KS-NFFMGMRPWRFVAIVE-NNIL  146 (179)
T ss_dssp             EEEEESS--------CHHHHHHHHH-HTTCCSSEEE--ECTTSHHHHH-TTCEEE-CG-GGTCCEEECCEEEEEE-TTEE
T ss_pred             EEEEecC--------CHHHHHHHHh-hcCcceEEEe--eCCchHHHHh-hhcccc-cc-cCCCeeEEeeEEEEEE-CCEE
Confidence            8899987        6788888887 556654 566  6666554332 111110 11 1122333333668888 8999


Q ss_pred             EEEe
Q 030881          147 VDRY  150 (170)
Q Consensus       147 ~~~~  150 (170)
                      .+.+
T Consensus       147 ~~~~  150 (179)
T d1xiya1         147 VKMF  150 (179)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.72  E-value=1.9e-08  Score=70.15  Aligned_cols=41  Identities=10%  Similarity=0.041  Sum_probs=37.4

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      ++.+|||+||++||+.|....+.|..+..+|.+  ++|+.|+.
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~--vkF~ki~~  159 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM--VKFCKIRA  159 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT--SEEEEEEH
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc--ceEEEEcc
Confidence            356999999999999999999999999999976  99999975

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.4e-08  Score=62.34  Aligned_cols=84  Identities=21%  Similarity=0.337  Sum_probs=56.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      ..-++|+.|+++||++|....+.|+++..++.   .+++.++.+        ...+   ..+ +|+..            
T Consensus        14 ~~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~---~~~v~vd~~--------~~~~---l~~-~y~~~------------   66 (100)
T d1wjka_          14 RALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI---LQEVDITLP--------ENST---WYE-RYKFD------------   66 (100)
T ss_dssp             CCCCEEEEEECSSCHHHHHHHHHTSTTSSSSE---EEEEETTSS--------TTHH---HHH-HSSSS------------
T ss_pred             CCCCEEEEEECCCCCChHHHHHHHHHhhhhcc---eEEEecccc--------cCHH---HHH-Hhccc------------
Confidence            44678999999999999999999988877764   455555443        2222   222 44432            


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEeCCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRYYPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~~~~~~~~~l~~~l~~~l~~  169 (170)
                                          ||   . ++|  +|+.+..  +..+.+.|++.|+++..+
T Consensus        67 --------------------VP---v-l~i--dg~~~~~--g~~d~~~L~~~L~~l~~~   97 (100)
T d1wjka_          67 --------------------IP---V-FHL--NGQFLMM--HRVNTSKLEKQLRKLSGP   97 (100)
T ss_dssp             --------------------CS---E-EEE--SSSEEEE--SSCCHHHHHHHHHSSSCS
T ss_pred             --------------------CC---c-eee--cCceEEe--CCCCHHHHHHHHHHHhcC
Confidence                                22   3 344  5666543  567888999999987654

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=2.3e-05  Score=49.10  Aligned_cols=41  Identities=15%  Similarity=0.041  Sum_probs=31.0

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC-cEEEEeec
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG-LEILAFPC   73 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-v~~v~is~   73 (170)
                      +++.+||.|+++||..|..  |.+.++.+++.+.. +..-.|.+
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~~~~~~V~~   61 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDDLLVAEVGI   61 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSSEEEEEEES
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHHHhhhccce
Confidence            5789999999999988864  78899999987663 33323544

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.78  E-value=6.6e-05  Score=49.66  Aligned_cols=49  Identities=10%  Similarity=0.077  Sum_probs=37.1

Q ss_pred             CeecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           23 HEVDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        23 ~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.+....-..+.+|+.|....||+|+...+.+.++.+..   .+.++.+.+.
T Consensus        27 ~~i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~~---~v~v~~~~~~   75 (169)
T d1v58a1          27 HWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSG---KVQLRTLLVG   75 (169)
T ss_dssp             CCEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHTT---SEEEEEEECC
T ss_pred             CCceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhcc---ceeEEEEecc
Confidence            444445555678999999999999999999999988764   2666666554

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.64  E-value=3.6e-05  Score=49.99  Aligned_cols=37  Identities=14%  Similarity=0.086  Sum_probs=30.3

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHh
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKY   61 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~   61 (170)
                      +.+..-.+|.+|+.|.-..||+|++..+.+.++.+..
T Consensus        19 ~i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~~   55 (150)
T d1t3ba1          19 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLG   55 (150)
T ss_dssp             EEECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHTT
T ss_pred             eEECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhccC
Confidence            3344446789999999999999999999999988654

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.50  E-value=7.3e-05  Score=49.40  Aligned_cols=47  Identities=13%  Similarity=0.014  Sum_probs=36.5

Q ss_pred             cCCCC-CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           26 DLSTY-KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        26 ~l~~~-~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      .+..- .++++|+.|..-.||+|....+.+.++.+++.+. +.+.-..+
T Consensus        11 ~~~~p~~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~-~~~~~~~~   58 (181)
T d1beda_          11 VLKTPASSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG-AKFQKNHV   58 (181)
T ss_dssp             ECSSCCCSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT-CEEEEEEC
T ss_pred             ECCCCCCCCCEEEEEECCCCccchhhhhhhhhHhhhcccc-cceeEEec
Confidence            34443 5789999999999999999999999999998765 44544443

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=7.9e-05  Score=48.57  Aligned_cols=45  Identities=11%  Similarity=0.187  Sum_probs=33.7

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      +.+..-.+|.+|+.|....||+|++..+.+.++.+.    ++.++.+.+
T Consensus        19 iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~~----~~~~~~~~~   63 (156)
T d1eeja1          19 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNAL----GITVRYLAF   63 (156)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHHT----TEEEEEEEC
T ss_pred             eeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhcc----CceEEEEec
Confidence            334444578999999999999999999999888653    355555544

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.83  E-value=0.0069  Score=39.11  Aligned_cols=49  Identities=14%  Similarity=0.213  Sum_probs=39.5

Q ss_pred             ecCCCCCCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCC-cEEEEeec
Q 030881           25 VDLSTYKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQG-LEILAFPC   73 (170)
Q Consensus        25 ~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~-v~~v~is~   73 (170)
                      +.+.+-.+++.|+.|....||+|.+..+.+.++..++.+.+ +.++-+..
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLF   66 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhccccceeeeeccc
Confidence            44666677899999999999999999999999999987664 55555544

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0041  Score=35.76  Aligned_cols=37  Identities=11%  Similarity=0.038  Sum_probs=29.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ++.|..++||+|.+.-.-|.++..++++  +.+..++++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~--i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD--FQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS--CEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC--ceEEEEecC
Confidence            5667789999999999999988888865  777777654

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=95.67  E-value=0.0071  Score=33.64  Aligned_cols=32  Identities=13%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..++|++|......|.+       +|+.+..+.++
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~-------~~i~~~~~~i~   34 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR-------AGLAYNTVDIS   34 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH-------TTCCCEEEETT
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------cCCceEEEEcc
Confidence            566778999999988765543       56777777775

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0066  Score=34.04  Aligned_cols=32  Identities=6%  Similarity=0.288  Sum_probs=23.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|..+||++|......|.       ++|+.+..+.++
T Consensus         3 i~iYs~~~C~~C~~ak~~L~-------~~~i~y~~~~i~   34 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAME-------NRGFDFEMINVD   34 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTTCCCEEEETT
T ss_pred             EEEEeCCCCccHHHHHHHHH-------hcCceeEEEeec
Confidence            45667899999998776553       356777777775

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.14  E-value=0.0055  Score=36.74  Aligned_cols=48  Identities=23%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHH
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVC   92 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~   92 (170)
                      |+.|..+|||+|...-.-|.++.-.+  ..+.+..+..+       .+...+.+..+
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~--~~~~~~e~d~~-------~d~~~~~~~l~   61 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE--GLLEFVDITAT-------SDTNEIQDYLQ   61 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT--TSEEEEEGGGS-------TTHHHHHHHHH
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc--ceeeeeecccc-------cccHHHHHHHh
Confidence            55777899999998877666543332  23566666554       23455555554

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.93  E-value=0.24  Score=33.45  Aligned_cols=38  Identities=11%  Similarity=0.136  Sum_probs=30.3

Q ss_pred             EEEEEEe-cCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           34 VLLIVNV-ASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        34 ~~lv~f~-~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      ..||+.| +.||+.|...-..|.++.+.   .++..|++++|
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~---~~Vi~La~HVd   44 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK---GDVVGLSYHVD   44 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH---TSSEEEEEECS
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC---CCEEEEEeccc
Confidence            3355554 88999999999999998764   35999999986

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.55  E-value=0.24  Score=29.99  Aligned_cols=45  Identities=22%  Similarity=0.204  Sum_probs=29.0

Q ss_pred             CCCCCCcEEEEEEec-CCCCCChhhHHHHHHHHHHhccCCcEEEEeec
Q 030881           27 LSTYKGKVLLIVNVA-SKCGMTNSNYIELSQLYDKYKDQGLEILAFPC   73 (170)
Q Consensus        27 l~~~~gk~~lv~f~~-~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~   73 (170)
                      ++.+++.+.|+.|-+ ..|+.|.....-++++..-- ++ +.+.....
T Consensus        17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~lS-dk-i~~~~~~~   62 (119)
T d1a8la1          17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSELT-DK-LSYEIVDF   62 (119)
T ss_dssp             GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTTC-TT-EEEEEEET
T ss_pred             HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHhhC-CC-eEEEEecc
Confidence            344566666777665 57999998777777765543 33 66655554

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=94.54  E-value=0.03  Score=31.59  Aligned_cols=32  Identities=16%  Similarity=0.330  Sum_probs=21.5

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |..|..+|||+|.+.-..|++       +|+.+..+.++
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~-------~~i~y~~~di~   34 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS-------KGVSFQELPID   34 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCCEEEECT
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------cCCCeEEEecc
Confidence            345667999999977655533       45666677665

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=94.44  E-value=0.018  Score=31.92  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=22.9

Q ss_pred             EEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           36 LIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        36 lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      |+.|..++||+|.+...-|.+       +|+.+..+.++
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~-------~~i~~~~~~v~   38 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHD-------KGLSFEEIILG   38 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HTCCCEEEETT
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cCCCeEEEEcc
Confidence            456778999999988765554       35666667665

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=94.00  E-value=0.067  Score=32.96  Aligned_cols=93  Identities=5%  Similarity=0.008  Sum_probs=59.1

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecCCCCCCCCCChHHHHHHHHhhcCCCCCceEEeecCCC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCNQFGEEEPGSNDQIADFVCTRFKSEFPIFEKIDVNGE  110 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~~  110 (170)
                      .++++++.|+.+. .........+.+++++|+++ +.++.++.+.       ..    ..+. .+++.-           
T Consensus        22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~~k-i~Fv~vd~~~-------~~----~~l~-~~gl~~-----------   76 (133)
T d2djka1          22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQRGV-INFGTIDAKA-------FG----AHAG-NLNLKT-----------   76 (133)
T ss_dssp             TTSCEEEEECSCS-SSHHHHHHHHHHHHHSSTTT-SEEEEECTTT-------TG----GGTT-TTTCCS-----------
T ss_pred             CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhcCc-eEEEEEeHHH-------hH----HHHH-HhcCCc-----------
Confidence            4678888887653 34566788889999999876 8888885431       11    1111 112110           


Q ss_pred             CchhHHHHhHhccCCccCCccccCceeEEECCCCcEEEEe--CCCCCchHHHHHHHHHhcC
Q 030881          111 HASPLYKLLKSGKWGIFGDDIQWNFAKFLVDKNGQVVDRY--YPTTSLLSLEHDIKKLLGL  169 (170)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~~G~i~~~~--~~~~~~~~l~~~l~~~l~~  169 (170)
                                        ...|   .+++++.++...+.+  .+..+.+.+.+.++..+++
T Consensus        77 ------------------~~~P---~~~i~~~~~~~~~~~~~~~~i~~~~i~~Fi~d~~~G  116 (133)
T d2djka1          77 ------------------DKFP---AFAIQEVAKNQKFPFDQEKEITFEAIKAFVDDFVAG  116 (133)
T ss_dssp             ------------------SSSS---EEEEECTTTCCBCCCCSSSCCCHHHHHHHHHHHHHT
T ss_pred             ------------------ccCC---cEEEEEcCCCceecCCccccCCHHHHHHHHHHHHcC
Confidence                              1223   778888777766654  3456788899999888753

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=92.81  E-value=0.35  Score=26.61  Aligned_cols=32  Identities=6%  Similarity=0.136  Sum_probs=19.9

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .-|..++|+.|......+.    +.  .++.+..++++
T Consensus         3 tLyt~~~C~LCe~A~~~l~----~~--~~~~~~~vdI~   34 (75)
T d1ttza_           3 TLYQRDDCHLCDQAVEALA----QA--RAGAFFSVFID   34 (75)
T ss_dssp             EEEECSSCHHHHHHHHHHH----HT--TCCCEEEEECT
T ss_pred             EEECCCCccHHHHHHHHHH----hc--cCCcEEEEEcc
Confidence            3455789999976544332    22  34667777765

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.007  Score=40.50  Aligned_cols=43  Identities=14%  Similarity=0.171  Sum_probs=33.6

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHH---HHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELS---QLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~---~~~~~~~~~~v~~v~is~d   74 (170)
                      .+++.|+.|+.-+||+|....|.|.   ++.+.+++ ++.++-.++.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~-~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPE-GVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCT-TCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCC-CcEEEEEecC
Confidence            5789999999999999999998775   55555553 4788777664

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=91.83  E-value=0.033  Score=36.23  Aligned_cols=45  Identities=13%  Similarity=0.087  Sum_probs=32.6

Q ss_pred             CCCcEEEEEEecCCCCCChhhHHHHHHHHHHhcc--CCcEEEEeecC
Q 030881           30 YKGKVLLIVNVASKCGMTNSNYIELSQLYDKYKD--QGLEILAFPCN   74 (170)
Q Consensus        30 ~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~--~~v~~v~is~d   74 (170)
                      ..++++|+.|+.-.||+|...-+.+..+.+....  .++.++..++.
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            4678899999999999999988887655443332  24677766654

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=0.86  Score=27.43  Aligned_cols=42  Identities=10%  Similarity=0.048  Sum_probs=30.7

Q ss_pred             CCcEEEEEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           31 KGKVLLIVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        31 ~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      .|.++++.|+.+.- .-......+.+++++|+++ +.|+.++.+
T Consensus        16 ~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fkgk-i~Fv~~D~~   57 (125)
T d2b5ea3          16 SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNRGL-MNFVSIDAR   57 (125)
T ss_dssp             TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTTTT-CEEEEEEHH
T ss_pred             cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhcCe-eEEEEEchH
Confidence            57898888887531 1234567788899999877 888888653

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.25  E-value=1.4  Score=25.78  Aligned_cols=26  Identities=27%  Similarity=0.450  Sum_probs=18.2

Q ss_pred             CCCCCChhhHHHHHHHHHHhccCCcEEEEeecC
Q 030881           42 SKCGMTNSNYIELSQLYDKYKDQGLEILAFPCN   74 (170)
Q Consensus        42 ~~C~~C~~~~~~l~~~~~~~~~~~v~~v~is~d   74 (170)
                      +.||+|......|.       +.++.+..+.++
T Consensus        28 p~Cp~c~~ak~lL~-------~~~i~~~~~~v~   53 (109)
T d1wika_          28 AKCGFSKQILEILN-------STGVEYETFDIL   53 (109)
T ss_dssp             CCSSTHHHHHHHHH-------HTCSCEEEEESS
T ss_pred             CCChHHHHHHHHHH-------hcCCCceEEEec
Confidence            56999998876553       345677777765

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=85.42  E-value=1.8  Score=23.77  Aligned_cols=34  Identities=9%  Similarity=-0.005  Sum_probs=25.8

Q ss_pred             EEEecCCCCCChhhHHHHHHHHHHhccCCcEEEEe
Q 030881           37 IVNVASKCGMTNSNYIELSQLYDKYKDQGLEILAF   71 (170)
Q Consensus        37 v~f~~~~C~~C~~~~~~l~~~~~~~~~~~v~~v~i   71 (170)
                      +...++.|+.|.+.....++..+++. ....+.-|
T Consensus         4 IkVlg~gC~~C~~~~~~v~~a~~e~g-i~a~v~kv   37 (77)
T d1iloa_           4 IQIYGTGCANCQMLEKNAREAVKELG-IDAEFEKI   37 (77)
T ss_dssp             EEEECSSSSTTHHHHHHHHHHHHHTT-CCEEEEEE
T ss_pred             EEEeCCCCccHHHHHHHHHHHHHHcC-CceEEEEe
Confidence            33458999999999999999888863 33566555

>d1pn0a2 c.47.1.10 (A:462-662) Phenol hydroxylase, C-terminal domain {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Phenol hydroxylase, C-terminal domain
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.17  E-value=3.9  Score=26.66  Aligned_cols=146  Identities=12%  Similarity=0.140  Sum_probs=79.3

Q ss_pred             cccCCcccccceeeC-CCCCeecCCCC---CCcEEEEEEecCCCC-CChhhHHHHHHHH-------HHhccC------Cc
Q 030881            5 FIQNPESIFDLSVKD-ARGHEVDLSTY---KGKVLLIVNVASKCG-MTNSNYIELSQLY-------DKYKDQ------GL   66 (170)
Q Consensus         5 ~~~~g~~~p~f~l~~-~~g~~~~l~~~---~gk~~lv~f~~~~C~-~C~~~~~~l~~~~-------~~~~~~------~v   66 (170)
                      -+.+|.++|++.+.. .|++++.|.+.   .|++-|+.|-+.... .....+..+.+..       .+|...      -+
T Consensus        16 ~~~iG~R~~sa~V~R~aDa~p~~L~~~~~adGrfrI~vFaGd~~~~~~~~~l~~la~~L~s~~s~~~r~t~~~~d~~~~i   95 (201)
T d1pn0a2          16 NCVVGTRFKSQPVVRHSEGLWMHFGDRLVTDGRFRIIVFAGKATDATQMSRIKKFAAYLDSENSVISRYTPKGADRNSRI   95 (201)
T ss_dssp             TSCTTSBCCCCEEEETTTTEEEEGGGGCCCSSCEEEEEEEECTTSHHHHHHHHHHHHHHHSTTSHHHHHSBTTSCTTSSE
T ss_pred             CCCCceecCCceEEEecCCCEeehhccccCCCcEEEEEEecCCCccchhhHHHHHHHHHhcccchhhhccCCCCCCCCcE
Confidence            367999999999987 58999998884   789999999875433 2222233333322       222111      27


Q ss_pred             EEEEeecCCCCCCCCCChHHHHHHHHh--hcCCCCCceEEeecC--CCCchhHHHHhHhccCCccCCccccCceeEEECC
Q 030881           67 EILAFPCNQFGEEEPGSNDQIADFVCT--RFKSEFPIFEKIDVN--GEHASPLYKLLKSGKWGIFGDDIQWNFAKFLVDK  142 (170)
Q Consensus        67 ~~v~is~d~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~i~~~p~~~lid~  142 (170)
                      .++.|.....      ..-++.++-..  ..+..|-.+. .+..  ......+|.  ...+....|       .++|+=|
T Consensus        96 ~~~~V~~~~~------~~ie~~dlP~~~~~~~~~~~~~~-~d~~~~~~~~~~ay~--~~GId~~~G-------~vVVVRP  159 (201)
T d1pn0a2          96 DVITIHSCHR------DDIEMHDFPAPALHPKWQYDFIY-ADCDSWHHPHPKSYQ--AWGVDETKG-------AVVVVRP  159 (201)
T ss_dssp             EEEEEESSCT------TSCCGGGSCTTTTSCTTCCSSEE-ECSCCSSSCCCCHHH--HHTBCTTTC-------EEEEECT
T ss_pred             EEEEEecCCC------CccccccccccccCCcceEEeee-cccccccCCcccHHH--HhCCCCCce-------EEEEECC
Confidence            8888865421      11111121110  0111122221 2211  111122222  222322233       7899999


Q ss_pred             CCcEEEEeCCCCCchHHHHHHHHHh
Q 030881          143 NGQVVDRYYPTTSLLSLEHDIKKLL  167 (170)
Q Consensus       143 ~G~i~~~~~~~~~~~~l~~~l~~~l  167 (170)
                      ||-|-... ...+.+.|.+.+...|
T Consensus       160 DgyVg~v~-~Ldd~~~L~~yF~~fl  183 (201)
T d1pn0a2         160 DGYTSLVT-DLEGTAEIDRYFSGIL  183 (201)
T ss_dssp             TSBEEEEE-CTTTHHHHHHHHHTTB
T ss_pred             CcceEEEE-ccccHHHHHHHHHHhh
Confidence            99988874 3346677888888776