Citrus Sinensis ID: 030884

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Secondary Structure (PSIPRED)
cEEEEEEEccccccEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEcccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccEEEEEccccccHcHEEEEEHHHHHHHHHHHcccccccccccHHHHccccccccEEEEEEEEcccEEEEEEEcccccccHHHccccccHEEHHccHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MIACVAVvghqnnplyiqSFTEADDALKLHHIVHCSLDVVdervnnpkksgptlnetflgllyptenykvygYLTNTKVKFILVTTdldvrdadvrnevpcciyrcrfkpisrawKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Flexible Loop (DISEMBL)
MIACVAVVghqnnplyIQSFTEADDALKLHHIVHCSLDVVDERvnnpkksgptlnetflglLYPTENYKVYGYLTNTKVKFILVTTdldvrdadvrnevpcciyrcrfkpisrawKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Low Complexity Region (SEG)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Disordered region (IsUnstruct)
*IACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVN*******TLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSAT***
Disordered Region (DISOPRED)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVD****************FLGLLYPTENYKVYGYLTNTKVKFILVTTDL*************CIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIR*
Disordered Region (DISEMBL)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Disordered Region (DISPRO)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLTIVFISSVLFSATIRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	170	2.2.26 [Sep-21-2011]
Q54CU7	140	Trafficking protein parti	yes	no	0.541	0.657	0.535	2e-24
Q9UL33	140	Trafficking protein parti	yes	no	0.564	0.685	0.494	1e-21
B2RYU6	139	Trafficking protein parti	yes	no	0.564	0.690	0.494	1e-21
Q5M8X5	139	Trafficking protein parti	yes	no	0.564	0.690	0.505	1e-21
Q9JME7	139	Trafficking protein parti	yes	no	0.564	0.690	0.494	1e-21
A6H7F7	139	Trafficking protein parti	yes	no	0.564	0.690	0.494	3e-21
B5XGE7	139	Trafficking protein parti	N/A	no	0.564	0.690	0.474	1e-20
B5FXJ6	139	Trafficking protein parti	yes	no	0.564	0.690	0.484	1e-20
Q5RBK9	109	Trafficking protein parti	yes	no	0.447	0.697	0.480	8e-14
O13732	148	Uncharacterized protein C	yes	no	0.547	0.628	0.3	2e-05

>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 77/99 (77%), Gaps = 7/99 (7%)

Query: 2  IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
          I CVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK     ++ +
Sbjct: 4  IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKLP---SDMY 60

Query: 59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVR 96
          LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++
Sbjct: 61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo sapiens GN=TRAPPC2L PE=1 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Homo sapiens (taxid: 9606)

>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 74/99 (74%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 73/99 (73%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  CVAV+  +N PLYI+S T  ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCVAVIAKENYPLYIRS-TPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Xenopus tropicalis (taxid: 8364)

>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus musculus GN=Trappc2l PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 73/99 (73%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Mus musculus (taxid: 10090)

>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos taurus GN=TRAPPC2L PE=2 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 73/99 (73%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Bos taurus (taxid: 9913)

>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein OS=Salmo salar GN=trappc2l PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 71/99 (71%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S     + LK H+ VH SLDVV+E+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-VPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Salmo salar (taxid: 8030)

>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1

 Score = 99.4 bits (246), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 72/99 (72%), Gaps = 3/99 (3%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
          LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct: 60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Taeniopygia guttata (taxid: 59729)

>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct: 1  MAVCIAVIAKENYPLYIRS-TPTENKLKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query: 61 LLYPTENYKVYGYLTNT 77
          LLYPTE+YK++  L N+
Sbjct: 60 LLYPTEDYKMFRKLHNS 76

May play a role in vesicular transport from endoplasmic reticulum to Golgi.

Pongo abelii (taxid: 9601)

>sp|O13732|YDOC_SCHPO Uncharacterized protein C15A10.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC15A10.12c PE=4 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 7/100 (7%)

Query: 2   IACVAVVGHQNNPLYIQSFTEADDAL--KLHHIVHCSLDVVDERVNNPKKSGPTLNETFL 59
           +  +++ G ++  LY++     +  L  +  ++   SLDV+++ VN+ ++   T N+ FL
Sbjct: 6   LVFLSIAGPKDEQLYLEIIDPKEKHLLARYQYLGELSLDVINDLVNDGER---TSNDCFL 62

Query: 60  GLLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
           GLL   E+   Y + +NTKVKFIL     D  V++ ++R 
Sbjct: 63  GLLGVEEDISTYAFYSNTKVKFILAVKAPDYVVKETEIRQ 102

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
357507947	115	Trafficking protein particle complex sub	0.676	1.0	0.886	7e-54
225428065	143	PREDICTED: trafficking protein particle	0.570	0.678	0.989	3e-50
449454229	143	PREDICTED: trafficking protein particle	0.570	0.678	0.958	2e-49
224105143	143	predicted protein [Populus trichocarpa]	0.570	0.678	0.979	6e-49
356531840	143	PREDICTED: uncharacterized protein LOC10	0.570	0.678	0.958	1e-48
356568553	143	PREDICTED: trafficking protein particle	0.570	0.678	0.958	2e-48
357507945	143	Trafficking protein particle complex sub	0.570	0.678	0.948	3e-48
242050020	143	hypothetical protein SORBIDRAFT_02g03142	0.570	0.678	0.917	7e-48
32526668	395	hypothetical protein [Oryza sativa Japon	0.570	0.245	0.886	1e-47
326521478	181	predicted protein [Hordeum vulgare subsp	0.570	0.535	0.896	2e-47

>gi|357507947|ref|XP_003624262.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula] gi|355499277|gb|AES80480.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 102/115 (88%), Positives = 105/115 (91%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1   MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAW 115
           LLYP ENYKVYGYLTNTKVKFILVTTD+DV+DADVRNE+ CCI RC FK I  A 
Sbjct: 61  LLYPIENYKVYGYLTNTKVKFILVTTDIDVKDADVRNEISCCICRCSFKSIPCAG 115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428065|ref|XP_002279626.1| PREDICTED: trafficking protein particle complex subunit 2-like protein [Vitis vinifera] gi|297744593|emb|CBI37855.3| unnamed protein product [Vitis vinifera]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/97 (98%), Positives = 96/97 (98%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454229|ref|XP_004144858.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Cucumis sativus] gi|449519966|ref|XP_004167005.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Cucumis sativus]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 96/97 (98%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNP+KSGPTLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPRKSGPTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFI+VTTDLDVRDADVR+
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVRDADVRS 97

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105143|ref|XP_002313700.1| predicted protein [Populus trichocarpa] gi|118482540|gb|ABK93191.1| unknown [Populus trichocarpa] gi|118483113|gb|ABK93465.1| unknown [Populus trichocarpa] gi|222850108|gb|EEE87655.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (503), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 95/97 (97%), Positives = 95/97 (97%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSG TLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGLTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531840|ref|XP_003534484.1| PREDICTED: uncharacterized protein LOC100527601 [Glycine max]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTDLDV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRN 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568553|ref|XP_003552475.1| PREDICTED: trafficking protein particle complex subunit 2-like protein-like [Glycine max]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/97 (95%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTDLDV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDLDVKDADVRN 97

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357507945|ref|XP_003624261.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula] gi|355499276|gb|AES80479.1| Trafficking protein particle complex subunit 2-like protein [Medicago truncatula]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGP LNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPMLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYP ENYKVYGYLTNTKVKFILVTTD+DV+DADVRN
Sbjct: 61 LLYPIENYKVYGYLTNTKVKFILVTTDIDVKDADVRN 97

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242050020|ref|XP_002462754.1| hypothetical protein SORBIDRAFT_02g031420 [Sorghum bicolor] gi|241926131|gb|EER99275.1| hypothetical protein SORBIDRAFT_02g031420 [Sorghum bicolor]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 89/97 (91%), Positives = 94/97 (96%)

Query: 1  MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
          MI CVAVVGHQNNPLY+QSFTEADDALKLHHIVHCSLDV+DERVNNPK+S PTLNETFLG
Sbjct: 1  MIVCVAVVGHQNNPLYLQSFTEADDALKLHHIVHCSLDVIDERVNNPKRSAPTLNETFLG 60

Query: 61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
          LLYPTENYKVYGYLTNTKVKFI+VTTDLDV+DAD RN
Sbjct: 61 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARN 97

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|32526668|dbj|BAC79191.1| hypothetical protein [Oryza sativa Japonica Group]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/97 (88%), Positives = 93/97 (95%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHH+VHCSLDV+DERVNNPK++ P LNETFLG
Sbjct: 254 MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRNAPALNETFLG 313

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
           LLYPTENYKVYGYLTNTKVKFI+VTTDLDV+DAD RN
Sbjct: 314 LLYPTENYKVYGYLTNTKVKFIMVTTDLDVKDADARN 350

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326521478|dbj|BAK00315.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/97 (89%), Positives = 94/97 (96%)

Query: 1   MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
           MI CVAVVGHQNNPLY+QSFTEADDALKLHH+VHCSLDV+DERVNNPK+S PTLNETFLG
Sbjct: 39  MIVCVAVVGHQNNPLYLQSFTEADDALKLHHVVHCSLDVIDERVNNPKRSAPTLNETFLG 98

Query: 61  LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
           LLYPTENYKVYGYLTNTKVKF++VTTDLDV+DAD RN
Sbjct: 99  LLYPTENYKVYGYLTNTKVKFLMVTTDLDVKDADARN 135

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
TAIR|locus:2051457	140	AT2G20930 "AT2G20930" [Arabido	0.570	0.692	0.907	1.2e-44
DICTYBASE|DDB_G0292690	140	trappc2l "trafficking protein	0.541	0.657	0.545	5.9e-25
UNIPROTKB|H3BP13	241	TRAPPC2L "Trafficking protein	0.564	0.398	0.494	7e-22
UNIPROTKB|Q9UL33	140	TRAPPC2L "Trafficking protein	0.564	0.685	0.494	7e-22
RGD|1304906	139	Trappc2l "trafficking protein	0.564	0.690	0.494	7e-22
MGI|MGI:1916295	139	Trappc2l "trafficking protein	0.564	0.690	0.494	9e-22
UNIPROTKB|A6H7F7	139	TRAPPC2L "Trafficking protein	0.564	0.690	0.494	1.9e-21
UNIPROTKB|E1BYR2	139	TRAPPC2L "Uncharacterized prot	0.564	0.690	0.484	3e-21
UNIPROTKB|E2RB28	140	TRAPPC2L "Uncharacterized prot	0.564	0.685	0.48	2.1e-20
UNIPROTKB|F1MIB4	139	TRAPPC2L "Trafficking protein	0.505	0.618	0.505	6.5e-19

TAIR|locus:2051457 AT2G20930 "AT2G20930" [Arabidopsis thaliana (taxid:3702)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 88/97 (90%), Positives = 92/97 (94%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             MI CVAVVGHQNNPLYIQSFT+ADDALKLHHIVHCSLDV++ERVNNPKKSG TLNE FLG
Sbjct:     1 MIVCVAVVGHQNNPLYIQSFTDADDALKLHHIVHCSLDVIEERVNNPKKSGTTLNEAFLG 60

Query:    61 LLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
             LLYPT NYKVYGYLTNTKVKFILVTTDLDVRD DVR+
Sbjct:    61 LLYPTVNYKVYGYLTNTKVKFILVTTDLDVRDTDVRS 97

GO:0003674 "molecular_function" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

DICTYBASE|DDB_G0292690 trappc2l "trafficking protein particle complex subunit 2-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 54/99 (54%), Positives = 78/99 (78%)

Query:     2 IACVAVVGHQNNPLYIQSFTEA---DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETF 58
             I CVA+VG  NNPL+IQ F+ +   ++ LKLH+IVHCSLD+++++  + KK  P+  + +
Sbjct:     4 IVCVAIVGKGNNPLFIQDFSSSITDENKLKLHYIVHCSLDIIEDKPGSNKKL-PS--DMY 60

Query:    59 LGLLYPTENYKVYGYLTNTKVKFILVTTDL-DVRDADVR 96
             LGLLYPTE+YKVYGYLTNTK+KFI+V  D  D++D+D++
Sbjct:    61 LGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|H3BP13 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 49/99 (49%), Positives = 74/99 (74%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0005622 "intracellular" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|Q9UL33 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 49/99 (49%), Positives = 74/99 (74%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1304906 Trappc2l "trafficking protein particle complex 2-like" [Rattus norvegicus (taxid:10116)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 49/99 (49%), Positives = 74/99 (74%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0005737 "cytoplasm" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:1916295 Trappc2l "trafficking protein particle complex 2-like" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 49/99 (49%), Positives = 73/99 (73%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S T  +  LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-TPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|A6H7F7 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Bos taurus (taxid:9913)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 49/99 (49%), Positives = 73/99 (73%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|E1BYR2 TRAPPC2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 48/99 (48%), Positives = 72/99 (72%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  C+AV+  +N PLYI+S    ++ LK H+ VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCIAVIAKENYPLYIRS-VPTENELKFHYTVHTSLDVVDEKISAMGKAMVDQRELYLG 59

Query:    61 LLYPTENYKVYGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YKVYGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|E2RB28 TRAPPC2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 48/100 (48%), Positives = 73/100 (73%)

Query:     1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLG 60
             M  CVAV+  +N PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LG
Sbjct:     1 MAVCVAVIAKENYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLG 59

Query:    61 LLYPTENYKV-YGYLTNTKVKFILV--TTDLDVRDADVRN 97
             LLYPTE+YK+ YGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    60 LLYPTEDYKIKYGYVTNSKVKFVMVVDSSNTALRDNEIRS 99

GO:0005737 "cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1MIB4 TRAPPC2L "Trafficking protein particle complex subunit 2-like protein" [Bos taurus (taxid:9913)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 45/89 (50%), Positives = 67/89 (75%)

Query:    11 QNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKV 70
             QN PLYI+S    ++ LK H++VH SLDVVDE+++   K+     E +LGLLYPTE+YKV
Sbjct:    11 QNYPLYIRSIP-TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKV 69

Query:    71 YGYLTNTKVKFILV--TTDLDVRDADVRN 97
             YGY+TN+KVKF++V  +++  +RD ++R+
Sbjct:    70 YGYVTNSKVKFVMVVDSSNTALRDNEIRS 98

GO:0005737 "cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036140001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (143 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00027363001	SubName- Full=Putative uncharacterized protein (Chromosome chr19 scaffold_4, whole genome shotg [...] (186 aa)				•	•		•		0.539

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	170
pfam04628	127	pfam04628, Sedlin_N, Sedlin, N-terminal conserved	2e-30

>gnl|CDD|218183 pfam04628, Sedlin_N, Sedlin, N-terminal conserved region

 Score =  106 bits (268), Expect = 2e-30
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 11/95 (11%)

Query: 7  VVGHQNNPLYIQSFTEADDALK----LHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLL 62
          ++G ++NPLY Q F+              I H SLD+V+E            N  +LGL+
Sbjct: 1  IIGKKDNPLYEQEFSSEGKTSIPKHLNQFIAHASLDIVEELQWKT-------NNMYLGLV 53

Query: 63 YPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRN 97
              +  V GY+TNT +KFIL+      RD D++ 
Sbjct: 54 DSFNDLAVSGYVTNTHIKFILLHDSSTERDDDIKQ 88

Mutations in this protein are associated with the X-linked spondyloepiphyseal dysplasia tarda syndrome (OMIM:313400). This family represents an N-terminal conserved region. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
KOG3487	139	consensus TRAPP 20 K subunit [Intracellular traffi	100.0
PF04628	132	Sedlin_N: Sedlin, N-terminal conserved region; Int	100.0
KOG3444	121	consensus Uncharacterized conserved protein [Funct	100.0
COG5603	136	TRS20 Subunit of TRAPP, an ER-Golgi tethering comp	99.97
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	98.5
KOG3369	199	consensus Transport protein particle (TRAPP) compl	98.07
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	97.53
KOG3368	140	consensus Transport protein particle (TRAPP) compl	97.04

>KOG3487 consensus TRAPP 20 K subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-38  Score=240.53  Aligned_cols=118  Identities=26%  Similarity=0.420  Sum_probs=106.8

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCc-------ccchhh-hHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEE
Q 030884            1 MIACVAVVGHQNNPLYIQSFTEA-------DDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (170)
Q Consensus         1 Mi~~~aIIG~~d~PLy~~~f~~~-------~~~l~~-qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vyg   72 (170)
                      |.+|+||||+.|+|+||.+++..       ++..++ |||+|||||+|||.+|.       +++||||.+|+|+++.|+|
T Consensus         1 m~~yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~-------~snmYLktVDkfne~~VSA   73 (139)
T KOG3487|consen    1 MTAYFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWT-------TSNMYLKTVDKFNELFVSA   73 (139)
T ss_pred             CceEEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHhhcceeEEE
Confidence            78999999999999999999954       234677 99999999999999997       3799999999999999999


Q ss_pred             EEecCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhccc--ccCcccccccccC
Q 030884           73 YLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAW--KKDNIQNICRESK  128 (170)
Q Consensus        73 yvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF--~~~~i~np~f~~~  128 (170)
                      |+|++++||+++|..+  .|++||+||+| |||+|+|++||||  .+|+|++|.||.+
T Consensus        74 yvTas~i~f~mlh~~~--~~~~ik~Ffqe-v~elyik~lmnpFy~~~dpirs~afd~k  128 (139)
T KOG3487|consen   74 YVTASHIRFIMLHINR--ADDNIKLFFQE-VHELYIKTLMNPFYEINDPIRSPAFDHK  128 (139)
T ss_pred             EEccCcEEEEEEeecc--ccccHHHHHHH-HHHHHHHHHhCcccccCCccccHHHHHH
Confidence            9999999999999986  69999999997 9999999999999  4578888877654

>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport

Probab=100.00  E-value=1.2e-36  Score=234.24  Aligned_cols=122  Identities=36%  Similarity=0.597  Sum_probs=95.1

Q ss_pred             EEcCCCCeeEEEcCCCcccch------hhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceE
Q 030884            7 VVGHQNNPLYIQSFTEADDAL------KLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (170)
Q Consensus         7 IIG~~d~PLy~~~f~~~~~~l------~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iK   80 (170)
                      |||++|+|||++++++.+++.      .+||++|+|||+|||++|+      +++++|||+|+++++++||||+|+||+|
T Consensus         1 IIg~~n~PLy~~~~~~~~~~~~~~~~~l~~~~~h~sLD~iee~~~~------~~~~~yLg~l~~~~~~~vygyvT~t~~K   74 (132)
T PF04628_consen    1 IIGPNNNPLYIRSFPSEKESSSSDARHLYQFIAHSSLDVIEEKLWK------SSSDMYLGLLDPFEDYKVYGYVTNTGIK   74 (132)
T ss_dssp             EE-TTS-EEEEEEE--ST-CGHHHHHHHHHHHHHHHHHHHHHCCHC------SSSCSEEEEEEEETTEEEEEEETTT--E
T ss_pred             CCCCCCcceEEEecCCCcccccchHHHHHHHHHHHHHHHHHHHHhh------cccccccCceehhhhHHHHhhhccCcee
Confidence            799999999999999874332      2799999999999999997      1368999999999999999999999999


Q ss_pred             EEEEEc--CCCCCchhhhhhhhhhhhhhhhhhhhcccccCcccccccccCCCCcchhhhhhHHHhhcccccc
Q 030884           81 FILVTT--DLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNL  150 (170)
Q Consensus        81 fVll~~--~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~  150 (170)
                      |||+++  ....+|++||+||++ +|++|++++||||+.         +++   +|   .|.-|++.||-.+
T Consensus        75 fvl~~~~~~~~~~d~~ik~fF~~-vh~~Y~~~~~NPF~~---------~~~---~I---~S~~Fd~~v~~l~  130 (132)
T PF04628_consen   75 FVLVHDMSDNSIRDEDIKQFFKE-VHELYVKALCNPFYQ---------PGT---PI---KSPKFDSRVRALA  130 (132)
T ss_dssp             EEEEECGGG-S--HHHHHHHHHH-HHHHHHHHHTSTTCG---------CT----HH---HHHHHHHHHHHHH
T ss_pred             EEEEEecccCCcchHHHHHHHHH-HHHHHHHHccCCCCC---------CCC---Cc---CCHHHHHHHHHHh
Confidence            999998  334799999999997 999999999999964         222   55   5667777776544

Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.

>KOG3444 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.2e-35  Score=219.10  Aligned_cols=116  Identities=50%  Similarity=0.794  Sum_probs=110.4

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCcccchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceE
Q 030884            1 MIACVAVVGHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVK   80 (170)
Q Consensus         1 Mi~~~aIIG~~d~PLy~~~f~~~~~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iK   80 (170)
                      |++|+|++|++|+|+|+..+++.++++++|+.+|+|||+|||+....+|+..++++.|||+|++.++++||||+|||++|
T Consensus         1 m~v~~av~g~kn~~lyi~s~t~~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfvtNTkVK   80 (121)
T KOG3444|consen    1 MLVCLAVAGPKNEPLYIESITPKEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFVTNTKVK   80 (121)
T ss_pred             CEEEEEEEcCCCCccEEEecCcHHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEEeccEEE
Confidence            89999999999999999999988899999999999999999999888888888899999999999999999999999999


Q ss_pred             EEEEEcCCC--CCchhhhhhhhhhhhhhhhhhhhccccc
Q 030884           81 FILVTTDLD--VRDADVRNEVPCCIYRCRFKPISRAWKK  117 (170)
Q Consensus        81 fVll~~~~~--~~d~~Ik~fF~e~V~elYvk~l~NPF~~  117 (170)
                      ||+++++++  .+|++||++|+. .|-+|.+.+||||+.
T Consensus        81 FIlvvdssd~avreteiRsv~r~-~h~l~td~~~npfy~  118 (121)
T KOG3444|consen   81 FILVVDSSDYAVRETEIRSVFRI-LHLLYTDLSCNPFYL  118 (121)
T ss_pred             EEEEEcCCcceehhHHHHHHHHH-HHHHHHHheecceec
Confidence            999998754  899999999995 999999999999975

>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]

Probab=99.97  E-value=1.3e-32  Score=209.11  Aligned_cols=116  Identities=18%  Similarity=0.348  Sum_probs=100.0

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCccc------chhh-hHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEE
Q 030884            1 MIACVAVVGHQNNPLYIQSFTEADD------ALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGY   73 (170)
Q Consensus         1 Mi~~~aIIG~~d~PLy~~~f~~~~~------~l~~-qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vygy   73 (170)
                      |-.++||||++|+|+|+.++++.++      -.++ ||++|+|||+++.++|+.       +..|+|+||.+.++.++||
T Consensus         1 M~~y~aIIg~KdnpVYe~e~~~~n~~~d~~~~~~ln~fiihaSlDiv~~lqwsv-------N~~Y~~~~d~f~~l~IsAY   73 (136)
T COG5603           1 MGEYLAIIGEKDNPVYEREYDPINKTSDGEYCRLLNQFIIHASLDIVVWLQWSV-------NTSYFDCLDSFGDLRISAY   73 (136)
T ss_pred             CCceEEEEecCCCceeeeeecCcCcccCHHHHHHHhHHhhhhhHHHHHHHHHHh-------hhHHHHHHHhhCCeEEEEE
Confidence            7789999999999999999995421      1345 999999999999999973       6899999999999999999


Q ss_pred             EecCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhccccc--Ccccccccc
Q 030884           74 LTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKK--DNIQNICRE  126 (170)
Q Consensus        74 vT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~--~~i~np~f~  126 (170)
                      ++++|+||+++|+..  .++++|+||+| |||+|+|++||||+.  ++|.+|.||
T Consensus        74 i~pSgmkf~~iH~n~--s~~N~rsF~qe-vHely~ktLmspfy~~~~pirsqafd  125 (136)
T COG5603          74 IMPSGMKFLFIHQNQ--SRKNARSFLQE-VHELYAKTLMSPFYEPDEPIRSQAFD  125 (136)
T ss_pred             EccCCceEEEEeccc--hhhhHHHHHHH-HHHHHHHHhhCcccCCCccccchhhh
Confidence            999999999999875  78999999997 999999988888843  455554443

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=98.50  E-value=1.6e-06  Score=67.85  Aligned_cols=128  Identities=15%  Similarity=0.181  Sum_probs=71.1

Q ss_pred             EEEEEEEcCCCCeeEEEcCCCcc---------cchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEE
Q 030884            2 IACVAVVGHQNNPLYIQSFTEAD---------DALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (170)
Q Consensus         2 i~~~aIIG~~d~PLy~~~f~~~~---------~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vyg   72 (170)
                      |..+=|+++...-||-+++....         ++.++=+=.--||--+-.++.......+..+...+. ...++.++++-
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~-~~~T~~yklh~   79 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFE-SFETDTYKLHC   79 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEE-EEEESS-EEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEE-EEEeCCEEEEE
Confidence            45678999999999999998642         223332333345666666654311110000111222 24468999999


Q ss_pred             EEecCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhcccccCcccccccccCCCCcchhhhhhHHHhhccc
Q 030884           73 YLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVR  147 (170)
Q Consensus        73 yvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~  147 (170)
                      |.|.||+|||++++..  .++....+.+ .+|++|++.+        +.||+|+++.   ||   .+.||+.++.
T Consensus        80 ~eT~TGlKFvl~td~~--~~~~~~~l~~-~~~~lY~dyV--------~KNPfy~~~~---pI---~~~lF~~~l~  137 (142)
T PF04099_consen   80 FETPTGLKFVLITDPN--VPSLRDELLR-IYYELYVDYV--------VKNPFYSLEM---PI---RCELFDTKLD  137 (142)
T ss_dssp             EE-TTS-EEEEEE-TT--CCHCHHHHHH-HHHHHHHHHH--------HS-TTS-TTS----------HHHHHHHH
T ss_pred             EEcCcCcEEEEEecCC--CccHHHHHHH-HHHHHHHHHH--------hhCCCCCCCC---cE---ehHHHHHHHH
Confidence            9999999999999874  3344555666 4999998843        3455566654   67   7888887765

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG3369 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=7.8e-06  Score=66.73  Aligned_cols=94  Identities=16%  Similarity=0.148  Sum_probs=70.9

Q ss_pred             HHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhh
Q 030884           33 VHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPIS  112 (170)
Q Consensus        33 ~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~  112 (170)
                      ..-+|+.|.++....++++   +   + .+-.++.+....|.|-||+|||++.+.   .-..+.+++++ +||+|.+-  
T Consensus       103 ~fhsl~aI~~qlsp~~ksS---G---i-e~LetdtF~l~~~QTlTG~KFVvis~~---~~~~aD~lLrK-iYelYsDy--  169 (199)
T KOG3369|consen  103 SFHSLFAISTQLSPEPKSS---G---I-EVLETDTFTLHIFQTLTGTKFVVIAEP---GTQGADSLLRK-IYELYSDY--  169 (199)
T ss_pred             hhcchhheeeccCCCCCCC---c---e-EEEEeccEEEEEEEccCCcEEEEEecC---CchhHHHHHHH-HHHHHHHH--
Confidence            3457888888877654432   1   1 133467899999999999999999987   44789999997 99999873  


Q ss_pred             cccccCcccccccccCCCCcchhhhhhHHHhhccccccc
Q 030884          113 RAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLL  151 (170)
Q Consensus       113 NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (170)
                            .+.||||.+.=   ||   -+.|||.++...+.
T Consensus       170 ------vlKNPfYSlEM---PI---Rc~lFDe~lk~~le  196 (199)
T KOG3369|consen  170 ------VLKNPFYSLEM---PI---RCELFDEKLKFLLE  196 (199)
T ss_pred             ------hhcCCccCccc---ce---eHHHhhHHHHHHHh
Confidence                  45678887777   77   78899988765543

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=97.53  E-value=0.00036  Score=53.60  Aligned_cols=116  Identities=16%  Similarity=0.177  Sum_probs=72.2

Q ss_pred             EEEEEcCCCCeeEEEcCCCcccchhh--hHHHHhhhhhhhhhhcCCCCCCCCCccccccc----ccccCCeEEEEEEecC
Q 030884            4 CVAVVGHQNNPLYIQSFTEADDALKL--HHIVHCSLDVVDERVNNPKKSGPTLNETFLGL----LYPTENYKVYGYLTNT   77 (170)
Q Consensus         4 ~~aIIG~~d~PLy~~~f~~~~~~l~~--qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~----Ld~~e~~~VygyvT~t   77 (170)
                      -+-||++...-+|-++|++.+.++.-  ..++-++|-=|-....+.        -+|-|.    +-.+..+.+.=|.|-|
T Consensus         5 ~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~--------~p~~gssg~~~l~~~~f~m~I~qT~T   76 (134)
T COG5122           5 QFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQT--------IPLPGSSGRLVLYFRNFVMTIFQTTT   76 (134)
T ss_pred             EEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhc--------ccCCCCCceEEEEeccEEEEEEEecC
Confidence            57799999999999999887554433  234444555444443321        112222    2236788899999999


Q ss_pred             ceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhcccccCcccccccccCCCCcchhhhhhHHHhhc
Q 030884           78 KVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAG  145 (170)
Q Consensus        78 ~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~  145 (170)
                      |+|||++.+.+  .-+..-+ .|+ +|++|.+-++        .||||.+.-   ||   -++|||.-
T Consensus        77 G~kFV~~~~k~--t~na~~q-l~k-iY~lYsdYV~--------knPfys~EM---PI---~c~lFde~  126 (134)
T COG5122          77 GTKFVFVAEKR--TVNALFQ-LQK-IYSLYSDYVT--------KNPFYSPEM---PI---QCSLFDEH  126 (134)
T ss_pred             CcEEEEEecCC--chhHHHH-HHH-HHHHHHHHhh--------cCCCCCccc---ce---ehhhhhHH
Confidence            99999999764  2222222 565 8999887443        355555444   45   55666643

>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.014  Score=45.75  Aligned_cols=112  Identities=21%  Similarity=0.295  Sum_probs=79.9

Q ss_pred             EEEEEEcCCCCeeEEEcCCCc-------ccchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEe
Q 030884            3 ACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLT   75 (170)
Q Consensus         3 ~~~aIIG~~d~PLy~~~f~~~-------~~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT   75 (170)
                      .-+=|-+++.+=||-++-...       +++.++=|=.-.||--+-+++...     +.++.++  =+++..|++.=|.|
T Consensus         4 y~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~-----d~k~~f~--sy~Ts~YklhfyeT   76 (140)
T KOG3368|consen    4 YNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPG-----DVKDGFL--SYKTSKYKLHFYET   76 (140)
T ss_pred             EEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCC-----CcccCee--EEeeceeEEEEEEc
Confidence            346677888888888776543       344667666667787777777532     2244444  35678999999999


Q ss_pred             cCceEEEEEEcCCCCCchhhhhhhhhhhhh-hhhhhhhcccccCcccccccccCCCCcc
Q 030884           76 NTKVKFILVTTDLDVRDADVRNEVPCCIYR-CRFKPISRAWKKDNIQNICRESKHHSQV  133 (170)
Q Consensus        76 ~t~iKfVll~~~~~~~d~~Ik~fF~e~V~e-lYvk~l~NPF~~~~i~np~f~~~~~~~~  133 (170)
                      +||+|||+.++.   +-.++|...+. +|. +|++.+        ..||.+..+-.+|+
T Consensus        77 ptglk~vl~Tdp---k~~~ir~vLq~-IYs~lyVE~V--------vknpl~~~~~~~~i  123 (140)
T KOG3368|consen   77 PTGLKFVLNTDP---KAGSIRDVLQY-IYSHLYVEYV--------VKNPLYTYDPGSPI  123 (140)
T ss_pred             CCCcEEEEecCC---CcccHHHHHHH-HHHHHHHHHH--------HcCcccccCCCCcc
Confidence            999999999976   67789999997 888 898843        33666665444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	1e-29
2j3w_A	142	Sedlin, trafficking protein particle complex prote	1e-19
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	2e-06

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae} Length = 162

 Score =  105 bits (263), Expect = 1e-29
 Identities = 18/103 (17%), Positives = 38/103 (36%), Gaps = 10/103 (9%)

Query: 2   IACVAVVGHQNNPLYIQSF----TEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNET 57
              V+++   + P+ I        E +D LK + + + SLD  +  +          ++ 
Sbjct: 10  PCFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEWHSLD---SKP 66

Query: 58  FLGLLYPTENYKVYGYL-TNTKVKFILVT--TDLDVRDADVRN 97
            L  ++  E   V+  L   T +K ++      L   D +   
Sbjct: 67  LLKSIFQLEGVSVFAMLIKQTGLKIVIGFEQKSLSGADDEFEA 109

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A Length = 142

 Score = 79.2 bits (195), Expect = 1e-19
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 14/91 (15%)

Query: 2  IACVAVVGHQNNPLYIQSFT-------EADDALKLHHIVHCSLDVVDERVNNPKKSGPTL 54
               +VGH +NP++   F        + D       I H +LD+VDE +          
Sbjct: 6  SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLS 58

Query: 55 NETFLGLLYPTENYKVYGYLTNTKVKFILVT 85
          N  +L  +     + V  ++T   ++FI++ 
Sbjct: 59 NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLH 89

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A Length = 219

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 15/89 (16%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 9   GHQNNPLYIQSFTEADDALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENY 68
            +  +  + +    +++ L L  + H    +  +       SG  +          T+ +
Sbjct: 91  NYPVSIRFGRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEM--------LETDTF 142

Query: 69  KVYGYLTNTKVKFILVTTDLDVRDADVRN 97
           K++ Y T T +KF+++    D R A + +
Sbjct: 143 KLHCYQTLTGIKFVVLA---DPRQAGIDS 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
3pr6_A	162	Trapp-associated protein TCA17; longin fold, vesic	100.0
2j3w_A	142	Sedlin, trafficking protein particle complex prote	99.97
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	99.92
2j3t_D	219	Trafficking protein particle complex subunit 4; tr	99.83
3cue_C	159	Transport protein particle 18 kDa subunit; membran	99.81
3cue_A	219	Transport protein particle 23 kDa subunit; membran	99.45

>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8e-36  Score=237.04  Aligned_cols=111  Identities=16%  Similarity=0.257  Sum_probs=95.6

Q ss_pred             EEEEEEcCCCCeeEEEcCCCcc----cchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEE-ecC
Q 030884            3 ACVAVVGHQNNPLYIQSFTEAD----DALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL-TNT   77 (170)
Q Consensus         3 ~~~aIIG~~d~PLy~~~f~~~~----~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vygyv-T~t   77 (170)
                      .|+||||++|+|||++.+++.+    ++|++||++|+|||+|||++..+  .+.+ .++|||+|+++|+++||||+ |||
T Consensus        11 ~FVaIIg~~n~PLyI~~~~~~~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~--~s~~-~~~~LglL~~~e~~~VYGy~iTnt   87 (162)
T 3pr6_A           11 CFVSLIDESDKPILIYVPNEAENEMNDVLKYNVLSNISLDYFESALVEW--HSLD-SKPLLKSIFQLEGVSVFAMLIKQT   87 (162)
T ss_dssp             SEEEEECTTSCEEEEECCC-------CHHHHHHHHHHHHHHHHCTTCCC--CCSS-SSCCCEEEEEETTEEEEEEECTTT
T ss_pred             eEEEEECCCCceeEEEeCCCccccccchhHHHHHHHHHHHHHhhhhhhc--cccc-cccccceEeecCCeEEEEEEEcCC
Confidence            4899999999999999998763    56999999999999999999321  1112 35899999999999999997 999


Q ss_pred             ceEEEEEEcCC---CCCc--hhhhhhhhhhhhhhhhhhhhccccc
Q 030884           78 KVKFILVTTDL---DVRD--ADVRNEVPCCIYRCRFKPISRAWKK  117 (170)
Q Consensus        78 ~iKfVll~~~~---~~~d--~~Ik~fF~e~V~elYvk~l~NPF~~  117 (170)
                      |+|||++++++   +.+|  ++||+||++ ||++|+|++||||++
T Consensus        88 ~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~-vh~~Yvk~l~NPFy~  131 (162)
T 3pr6_A           88 GLKIVIGFEQKSLSGADDEFEAINQIFET-VRKIYIRVKCNPLLV  131 (162)
T ss_dssp             CCEEEEEEEGGGCCCCHHHHHHHHHHHHH-HHHHHHHHHTCTTGG
T ss_pred             ceEEEEEEccCCcccccchHHHHHHHHHH-HHHHHHHHhcCCCCC
Confidence            99999999874   4678  899999997 999999999999977

>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A

Probab=99.97  E-value=3.4e-32  Score=210.89  Aligned_cols=128  Identities=21%  Similarity=0.291  Sum_probs=110.9

Q ss_pred             EEEEEEEcCCCCeeEEEcCCCcc-----cc--hhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEE
Q 030884            2 IACVAVVGHQNNPLYIQSFTEAD-----DA--LKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYL   74 (170)
Q Consensus         2 i~~~aIIG~~d~PLy~~~f~~~~-----~~--l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vygyv   74 (170)
                      ++|++|||++|+|||++++++..     ++  +.+||++|++||++|++.|.       ++++|||.+|+++++++|||+
T Consensus         6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~-------~~~~~l~~~~~~~~y~v~~~~   78 (142)
T 2j3w_A            6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL-------SNNMYLKTVDKFNEWFVSAFV   78 (142)
T ss_dssp             CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG-------CSCSEEEEEEEETTEEEEEEE
T ss_pred             EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCC-------CCcceeEeeecccceEEEEEE
Confidence            48999999999999999998752     12  44589999999999999985       268999999999999999999


Q ss_pred             ecCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhcccccCcccccccccCCCCcchhhhhhHHHhhccccccccch
Q 030884           75 TNTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLL  154 (170)
Q Consensus        75 T~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (170)
                      |+||+|||++++.+  ++++||++|++ +|++|++.+||||+.         +++   ||   .|.+|+..|+-.+++++
T Consensus        79 T~tg~Kfvl~~d~~--~~~~i~~~~~~-iy~~Y~~~v~NPfy~---------~~~---pI---~s~~Fd~~v~~~~~~~l  140 (142)
T 2j3w_A           79 TAGHMRFIMLHDVR--QEDGIKNFFTD-VYDLYIKFAMNPFYE---------PNS---PI---RSSAFDRKVQFLGKKHL  140 (142)
T ss_dssp             CTTCCEEEEEESSC--CHHHHHHHHHH-HHHHHHHHHHSTTCC---------TTC---CC---CCHHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEeCCC--CcHHHHHHHHH-HHHHHHHHhcCCCCC---------CCC---ce---ecHHHHHHHHHHHHHhc
Confidence            99999999999873  69999999997 999999999888854         333   67   78899999888777765

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=99.92  E-value=6.9e-25  Score=170.66  Aligned_cols=127  Identities=14%  Similarity=0.105  Sum_probs=103.3

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCc-------ccchhh-hHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEE
Q 030884            1 MIACVAVVGHQNNPLYIQSFTEA-------DDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYG   72 (170)
Q Consensus         1 Mi~~~aIIG~~d~PLy~~~f~~~-------~~~l~~-qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~Vyg   72 (170)
                      |+.|++|||++|+|||+++++..       +++.++ ++++|+..|++++..|..       +..++..+ ++++++++|
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~-------~~~~~~~~-~t~~ykl~~   73 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLD-------MKDGFLSF-QTSRYKLHY   73 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSC-------CSSCEEEE-ECSSCEEEE
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCC-------CCCceEEE-ecCCEEEEE
Confidence            47899999999999999999753       233444 889999888888887742       34567666 899999999


Q ss_pred             EEecCceEEEEEEcCCCCCchhhhhhhhhhhh-hhhhh-hhhcccccCcccccccccCCCCcchhhhhhHHHhhcccccc
Q 030884           73 YLTNTKVKFILVTTDLDVRDADVRNEVPCCIY-RCRFK-PISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNL  150 (170)
Q Consensus        73 yvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~-elYvk-~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~  150 (170)
                      |+|+||+|||++++.   ++++||++|++ +| |+|++ +++|||+.         ++.   ||   .|.+||..|+-.+
T Consensus        74 ~~T~TgiKFvl~td~---~~~~i~~~l~~-iy~~lYv~~v~kNPfy~---------~~~---pI---~s~~Fd~~v~~~~  134 (145)
T 2j3t_C           74 YETPTGIKVVMNTDL---GVGPIRDVLHH-IYSALYVEFVVKNPLCP---------LGQ---TV---QSELFRSRLDSYV  134 (145)
T ss_dssp             EECTTSCEEEEEECT---TCCCCHHHHHH-HHHTTHHHHTTTCTTSC---------TTS---CC---CCHHHHHHHHHHH
T ss_pred             EEcCCCCEEEEEecC---CcchHHHHHHH-HHHHHHHHHHhcCCCCC---------CCC---ce---ecHHHHHHHHHHH
Confidence            999999999999986   68889999997 99 99999 55588854         333   67   7888998888777


Q ss_pred             ccch
Q 030884          151 LNLL  154 (170)
Q Consensus       151 ~~~~  154 (170)
                      +++.
T Consensus       135 ~~~~  138 (145)
T 2j3t_C          135 RSLP  138 (145)
T ss_dssp             TTST
T ss_pred             HhCc
Confidence            7654

>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A

Probab=99.83  E-value=3.4e-21  Score=159.35  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=95.8

Q ss_pred             EEEcCCCCeeEEEcCCCc-cc--chhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEecCceEEE
Q 030884            6 AVVGHQNNPLYIQSFTEA-DD--ALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLTNTKVKFI   82 (170)
Q Consensus         6 aIIG~~d~PLy~~~f~~~-~~--~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT~t~iKfV   82 (170)
                      .|+|++|+|||++.+.+. ++  .+.+..++| |||.|++++|...      +...+ ....++++++|||+|+||+|||
T Consensus        85 ~iigk~N~PLyir~f~~~l~sn~~L~lag~lh-SLd~i~~klsp~~------~s~g~-~~~~T~~ykl~~y~T~TgiKFV  156 (219)
T 2j3t_D           85 YLGNPANYPVSIRFGRPRLTSNEKLMLASMFH-SLFAIGSQLSPEQ------GSSGI-EMLETDTFKLHCYQTLTGIKFV  156 (219)
T ss_dssp             HTTCGGGCSEEEEEECCCCCHHHHHHHHHHHH-HHHHHHHHTCSSS------SCCSC-SEEEESSCEEEEEECTTSCEEE
T ss_pred             eeecCCCCceEEEecCCCCChhHHHHHHHHHH-HHHHHHHHhCCCC------CCCCe-eEEecCceEEEEEEcCCCCEEE
Confidence            578999999999999876 22  244466999 9999999998521      12233 3446899999999999999999


Q ss_pred             EEEcCCCCCchhhhhhhhhhhhhhhhhh-hhcccccCcccccccccCCCCcchhhhhhHHHhhccccccccch
Q 030884           83 LVTTDLDVRDADVRNEVPCCIYRCRFKP-ISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLL  154 (170)
Q Consensus        83 ll~~~~~~~d~~Ik~fF~e~V~elYvk~-l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (170)
                      ++++.   +++++|++|++ +|++|++. ++|||+.         ++.   ||   .|.+|++.|+-.++++.
T Consensus       157 Lltd~---~~~~ir~~l~~-IyelYvd~V~kNPFY~---------~~~---pI---~s~~Fd~~v~~l~~~~~  210 (219)
T 2j3t_D          157 VLADP---RQAGIDSLLRK-IYEIYSDFALKNPFYS---------LEM---PI---RCELFDQNLKLALEVAE  210 (219)
T ss_dssp             EEECT---TCCCHHHHHHH-HHHHHHHHHTTCTTCC---------TTS---CC---CCHHHHHHHHHHHHHHT
T ss_pred             EEecC---CchHHHHHHHH-HHHHHHHHhccCCCCC---------CCC---cc---chHHHHHHHHHHHHHhh
Confidence            99986   69999999997 99999996 4487754         333   56   78888888887766544

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.81  E-value=2e-20  Score=147.70  Aligned_cols=134  Identities=13%  Similarity=0.174  Sum_probs=95.2

Q ss_pred             CEEEEEEEcCCCCeeEEEcCCCc-------------ccchhh-hHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccC
Q 030884            1 MIACVAVVGHQNNPLYIQSFTEA-------------DDALKL-HHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTE   66 (170)
Q Consensus         1 Mi~~~aIIG~~d~PLy~~~f~~~-------------~~~l~~-qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e   66 (170)
                      |+.||.|||++++|||.+++...             +++.++ ..++|+..+++++..|..      ..+.|  ...+++
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~------~~~~f--~~~~T~   73 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGS------VKNDI--RSISTG   73 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSS------SCCCE--EEEECS
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCC------CCCCe--EEEeeC
Confidence            46899999999999999999531             334666 445555444444443321      13455  567789


Q ss_pred             CeEEEEEEecCceEEEEEEcCCCCCchhhhhhhhhhhhh-hhhh-hhhcc-----cccCcccccccccCCCCcchhhhhh
Q 030884           67 NYKVYGYLTNTKVKFILVTTDLDVRDADVRNEVPCCIYR-CRFK-PISRA-----WKKDNIQNICRESKHHSQVIWVEFS  139 (170)
Q Consensus        67 ~~~VygyvT~t~iKfVll~~~~~~~d~~Ik~fF~e~V~e-lYvk-~l~NP-----F~~~~i~np~f~~~~~~~~~~~~~~  139 (170)
                      +|++|||+|+||+|||++++.   +++++|++|++ +|+ +|++ +++||     |+.---.|    ......||   .|
T Consensus        74 ~ykl~~~eT~TgiKFvl~td~---~~~~i~~~l~~-iy~~lYv~yv~kNPl~~~~Fy~~~~~~----~~~~~~pI---~s  142 (159)
T 3cue_C           74 KYRVHTYCTASGLWFVLLSDF---KQQSYTQVLQY-IYSHIYVKYVSNNLLSPYDFAENENEM----RGQGTRKI---TN  142 (159)
T ss_dssp             SCBEEEECCSSCCEEEEECCS---SSSCTHHHHHH-HHHHHHHHHHHSCTTSCCSCCCSCTTT----TTSCCCCC---CC
T ss_pred             CEEEEEEEeCCCCEEEEEeCC---CcchHHHHHHH-HHHHHHHHHHHhCCCcccccccccccc----ccccCcCc---cc
Confidence            999999999999999999986   68999999997 998 9999 77999     64311111    11223477   78


Q ss_pred             HHHhhccccccccc
Q 030884          140 WLIAAGVRLNLLNL  153 (170)
Q Consensus       140 ~~~~~~~~~~~~~~  153 (170)
                      .+|+..|+--++++
T Consensus       143 ~~Fd~~l~~~~~~~  156 (159)
T 3cue_C          143 RNFISVLESFLAPM  156 (159)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999887666554

>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=99.45  E-value=6.6e-13  Score=109.73  Aligned_cols=74  Identities=18%  Similarity=0.130  Sum_probs=57.7

Q ss_pred             cccCCeEEEEEEecCceEEEEEEcCCC---------------------CCchhhhhhhhhhhhhhhhhhhh-cccccCcc
Q 030884           63 YPTENYKVYGYLTNTKVKFILVTTDLD---------------------VRDADVRNEVPCCIYRCRFKPIS-RAWKKDNI  120 (170)
Q Consensus        63 d~~e~~~VygyvT~t~iKfVll~~~~~---------------------~~d~~Ik~fF~e~V~elYvk~l~-NPF~~~~i  120 (170)
                      ...++|++|||+|+||+|||++|+...                     ++|++||+||++ |||+|+|.+| |||+.   
T Consensus       122 ~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~~~~~~~~~s~l~e~~ir~ff~~-VYelYvd~VmkNPFY~---  197 (219)
T 3cue_A          122 LCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIADNFLRK-VYCLYSDYVMKDPSYS---  197 (219)
T ss_dssp             EEESSCEEEEEECTTSCEEEEEESSCC--------------------CHHHHHHHHHHHH-HHHHHHHHHHSCTTCC---
T ss_pred             EEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccccccccccccccchHHHHHHHHHH-HHHHHHHHHhcCCCCC---
Confidence            446889999999999999999998742                     113899999997 9999999554 88854   


Q ss_pred             cccccccCCCCcchhhhhhHHHhhcccccccc
Q 030884          121 QNICRESKHHSQVIWVEFSWLIAAGVRLNLLN  152 (170)
Q Consensus       121 ~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (170)
                            ++.   +|   .|-+|+..|+-.+++
T Consensus       198 ------~~~---pI---~S~~Fd~~V~~~~~~  217 (219)
T 3cue_A          198 ------MEM---PI---RSNLFDEKVKKMVEN  217 (219)
T ss_dssp             ------TTS---CC---CCHHHHHHHHHHHHH
T ss_pred             ------CCC---cc---ccHHHHHHHHHHHHh
Confidence                  333   56   777888877766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d2j3wa1	140	d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musc	2e-21

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.3 bits (203), Expect = 2e-21
 Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 14/101 (13%)

Query: 2  IACVAVVGHQNNPLYIQSFTEA-------DDALKLHHIVHCSLDVVDERVNNPKKSGPTL 54
               +VGH +NP++   F          D       I H +LD+VDE +          
Sbjct: 4  SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-------WLS 56

Query: 55 NETFLGLLYPTENYKVYGYLTNTKVKFILVTTDLDVRDADV 95
          N  +L  +     + V  ++T   ++FI++           
Sbjct: 57 NNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKN 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d2j3wa1	140	Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]	100.0

>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Sedlin (SEDL)
domain: Sedlin (SEDL)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-35  Score=226.09  Aligned_cols=128  Identities=20%  Similarity=0.281  Sum_probs=112.5

Q ss_pred             EEEEEEcCCCCeeEEEcCCCcc-------cchhhhHHHHhhhhhhhhhhcCCCCCCCCCcccccccccccCCeEEEEEEe
Q 030884            3 ACVAVVGHQNNPLYIQSFTEAD-------DALKLHHIVHCSLDVVDERVNNPKKSGPTLNETFLGLLYPTENYKVYGYLT   75 (170)
Q Consensus         3 ~~~aIIG~~d~PLy~~~f~~~~-------~~l~~qfi~haSLDiiEe~~~~~~k~~~~s~~~YLG~Ld~~e~~~VygyvT   75 (170)
                      ++++|||++|+|||+++|++..       ..+..||++|+|||++||++|.       ++++|||+|+++++++||||+|
T Consensus         5 y~f~IIg~~~~pLY~~ef~~~~~~~~~~~~~~~~~fi~hssLDive~~~~~-------~~~~~l~~l~~~~~~~v~~y~T   77 (140)
T d2j3wa1           5 FYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWL-------SNNMYLKTVDKFNEWFVSAFVT   77 (140)
T ss_dssp             EEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGG-------CSCSEEEEEEEETTEEEEEEEC
T ss_pred             EEEEEEcCCCCeeEEEecCCcccccccchHHHHHHHHHHHHHHHHHHhccc-------CCCccceeEEecCCEEEEEEEc
Confidence            7999999999999999998651       1244599999999999999996       2689999999999999999999


Q ss_pred             cCceEEEEEEcCCCCCchhhhhhhhhhhhhhhhhhhhcccccCcccccccccCCCCcchhhhhhHHHhhccccccccchh
Q 030884           76 NTKVKFILVTTDLDVRDADVRNEVPCCIYRCRFKPISRAWKKDNIQNICRESKHHSQVIWVEFSWLIAAGVRLNLLNLLT  155 (170)
Q Consensus        76 ~t~iKfVll~~~~~~~d~~Ik~fF~e~V~elYvk~l~NPF~~~~i~np~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (170)
                      +||+|||++++.+  .++.+|+||++ +||+|++.+||||+.         +++   ||   .|.+|++.|+-.+++.|+
T Consensus        78 ~tg~Kfvl~td~~--~~~~i~~~~~~-v~~lYv~~v~NPfy~---------~~~---pI---~s~~Fd~~v~~~~~~~l~  139 (140)
T d2j3wa1          78 AGHMRFIMLHDVR--QEDGIKNFFTD-VYDLYIKFAMNPFYE---------PNS---PI---RSSAFDRKVQFLGKKHLL  139 (140)
T ss_dssp             TTCCEEEEEESSC--CHHHHHHHHHH-HHHHHHHHHHSTTCC---------TTC---CC---CCHHHHHHHHHHHHHHTC
T ss_pred             CCCcEEEEEeCCC--cchHHHHHHHH-HHHHHHHHhhCccCC---------CCC---cc---cCHHHHHHHHHHHHHHcc
Confidence            9999999999875  88999999997 999999998888854         333   67   799999999998888764