Citrus Sinensis ID: 030909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MSSSNNSNNNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAMTTQALHHSHH
Secondary Structure (PSIPRED)
ccccccccccHHcccccccccccccccHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccccccccEEEccEEEEEEEEEEEcccccccccccccEEEEccccccccccccccccccccEEEEEEEEcccccccHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccHHHHHHHHHHHHHccccccEEEEEEEcccccccccccccccHHcccccEEcccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msssnnsnnnirmveaqlppgfrfhprddeLVCDYLMKKVTHTNESILLAAVdlnkcepwdipglrtnratasgywkatgkdrailrkGSLVGMRKTLVFyrgrapkgkkteWVMHEFrlegpfanspkasslkigccveCFTKREKFLANRAWEAAAMTTQALHHSHH
Flexible Loop (DISEMBL)
msssnnsnnniRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPglrtnratasgywkatgkdrailrkgslvgmrktlvfyrgrapkgkktEWVMHEFRLEgpfanspkasslKIGCCVECFTKREKFLANRAWEAAAMTTqalhhshh
Low Complexity Region (SEG)
MsssnnsnnnIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAMTTQALHHSHH
Disordered region (IsUnstruct)
********************GFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAM**********
Disordered Region (DISOPRED)
******************PPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRL****************CCVECFT**************************
Disordered Region (DISEMBL)
********NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAM**********
Disordered Region (DISPRO)
****************QLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFA******SLKIGCCVECFTKREKF*********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSNNSNNNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIPGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLANRAWEAAAMTTQALHHSHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q84TE6	324	NAC domain-containing pro	yes	no	0.674	0.351	0.652	6e-48
Q9FLJ2	336	NAC domain-containing pro	no	no	0.733	0.369	0.543	9e-38
O04017	375	Protein CUP-SHAPED COTYLE	no	no	0.639	0.288	0.556	4e-35
Q9FRV4	310	Protein CUP-SHAPED COTYLE	no	no	0.710	0.387	0.524	1e-34
Q9S851	334	Protein CUP-SHAPED COTYLE	no	no	0.633	0.320	0.537	1e-33
Q5CD17	396	NAC domain-containing pro	no	no	0.644	0.275	0.493	2e-33
Q9FWX2	395	NAC domain-containing pro	no	no	0.674	0.288	0.471	1e-31
Q84WP6	365	NAC domain-containing pro	no	no	0.633	0.293	0.481	6e-31
Q9SV87	341	Protein BEARSKIN1 OS=Arab	no	no	0.763	0.378	0.449	9e-31
Q9M274	334	NAC domain-containing pro	no	no	0.633	0.320	0.458	3e-30

>sp|Q84TE6|NAC22_ARATH NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2

 Score =  189 bits (481), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 90/138 (65%), Positives = 104/138 (75%), Gaps = 24/138 (17%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNE--SILLAAVDLNKCEPWDIP--- 63
           ++I MVEA+LPPGFRFHP+DDELVCDYLM++  H N    ++L  VDLNKCEPWDIP   
Sbjct: 10  SSISMVEAKLPPGFRFHPKDDELVCDYLMRRSLHNNHRPPLVLIQVDLNKCEPWDIPKMA 69

Query: 64  -------------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGR 104
                              GLRTNRATA+GYWKATGKDR ILRKG LVGMRKTLVFY+GR
Sbjct: 70  CVGGKDWYFYSQRDRKYATGLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQGR 129

Query: 105 APKGKKTEWVMHEFRLEG 122
           AP+G+KT+WVMHEFRL+G
Sbjct: 130 APRGRKTDWVMHEFRLQG 147

Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLJ2|NC100_ARATH NAC domain-containing protein 100 OS=Arabidopsis thaliana GN=NAC100 PE=2 SV=1

 Score =  155 bits (393), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/149 (54%), Positives = 96/149 (64%), Gaps = 25/149 (16%)

Query: 15  EAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP---------- 63
           +  LPPGFRFHP D+EL+  YL KKV  T+ S   +  VDLNK EPW++P          
Sbjct: 13  QMDLPPGFRFHPTDEELITHYLHKKVLDTSFSAKAIGEVDLNKSEPWELPWMAKMGEKEW 72

Query: 64  ------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKT 111
                       GLRTNRAT +GYWKATGKD+ I R  SLVGM+KTLVFYRGRAPKG+KT
Sbjct: 73  YFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKT 132

Query: 112 EWVMHEFRLEGPFA--NSPKASSLKIGCC 138
            WVMHE+RLEG F+  N PK +  +   C
Sbjct: 133 NWVMHEYRLEGKFSAHNLPKTAKNEWVIC 161

Arabidopsis thaliana (taxid: 3702)

>sp|O04017|NAC98_ARATH Protein CUP-SHAPED COTYLEDON 2 OS=Arabidopsis thaliana GN=NAC098 PE=1 SV=1

 Score =  147 bits (370), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/133 (55%), Positives = 89/133 (66%), Gaps = 25/133 (18%)

Query: 18  LPPGFRFHPRDDELVCDYLMKKVTHT-NESILLAAVDLNKCEPWDIPG------------ 64
           LPPGFRFHP D+EL+  YL++KV      S  +A VDLNKCEPW +PG            
Sbjct: 17  LPPGFRFHPTDEELITHYLLRKVLDGCFSSRAIAEVDLNKCEPWQLPGRAKMGEKEWYFF 76

Query: 65  ----------LRTNRATASGYWKATGKDRAIL--RKGSLVGMRKTLVFYRGRAPKGKKTE 112
                     LRTNRAT +GYWKATGKDR I   +  +LVGM+KTLVFY+GRAPKG+K+ 
Sbjct: 77  SLRDRKYPTGLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSN 136

Query: 113 WVMHEFRLEGPFA 125
           WVMHE+RLEG F+
Sbjct: 137 WVMHEYRLEGKFS 149

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRV4|NAC54_ARATH Protein CUP-SHAPED COTYLEDON 1 OS=Arabidopsis thaliana GN=NAC054 PE=1 SV=1

 Score =  145 bits (366), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 97/145 (66%), Gaps = 25/145 (17%)

Query: 15  EAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP---------- 63
           E+ +PPGFRFHP D+EL+  YL+KKV  +N S   ++ VDLNK EPW++P          
Sbjct: 17  ESLMPPGFRFHPTDEELITYYLLKKVLDSNFSCAAISQVDLNKSEPWELPEKAKMGEKEW 76

Query: 64  ------------GLRTNRATASGYWKATGKDRAI--LRKGSLVGMRKTLVFYRGRAPKGK 109
                       GLRTNRAT +GYWKATGKDR I   +  SL+GM+KTLVFY+GRAPKG+
Sbjct: 77  YFFTLRDRKYPTGLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGE 136

Query: 110 KTEWVMHEFRLEGPFANSPKASSLK 134
           K+ WVMHE+RL+G F+    +SS K
Sbjct: 137 KSCWVMHEYRLDGKFSYHYISSSAK 161

Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Seems to act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S851|NAC31_ARATH Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=1 SV=1

 Score =  142 bits (358), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 87/132 (65%), Gaps = 25/132 (18%)

Query: 15  EAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP---------- 63
           E  LPPGFRFHP D+EL+  YL  K+ H   S I ++ VDLN+CEPW++P          
Sbjct: 19  ERGLPPGFRFHPTDEELITFYLASKIFHGGLSGIHISEVDLNRCEPWELPEMAKMGEREW 78

Query: 64  ------------GLRTNRATASGYWKATGKDRAILRKGS--LVGMRKTLVFYRGRAPKGK 109
                       GLRTNRAT +GYWKATGKD+ +   G   LVGM+KTLVFY+GRAP+G 
Sbjct: 79  YFYSLRDRKYPTGLRTNRATTAGYWKATGKDKEVFSGGGGQLVGMKKTLVFYKGRAPRGL 138

Query: 110 KTEWVMHEFRLE 121
           KT+WVMHE+RLE
Sbjct: 139 KTKWVMHEYRLE 150

Transcription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5CD17|NAC77_ORYSJ NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 85/148 (57%), Gaps = 39/148 (26%)

Query: 18  LPPGFRFHPRDDELVCDYLMKKVTHTN-ESILLAAVDLNKCEPWDIP------------- 63
           LPPGFRFHP D E++  YL++K+ + +  S+ +  VDLNKCEPWD+P             
Sbjct: 19  LPPGFRFHPTDAEVILSYLLQKLLNPSFTSLPIGEVDLNKCEPWDLPSKAKMGEKEWYFF 78

Query: 64  ---------GLRTNRATASGYWKATGKDRAILR----------------KGSLVGMRKTL 98
                    G+RTNRAT  GYWKATGKDR I R                K  LVGM+KTL
Sbjct: 79  SHKDMKYPTGMRTNRATKEGYWKATGKDREIFRQPAAVNTSSYGGSSNKKKQLVGMKKTL 138

Query: 99  VFYRGRAPKGKKTEWVMHEFRLEGPFAN 126
           VFY GRAPKG KT WVMHEFRL     N
Sbjct: 139 VFYMGRAPKGTKTNWVMHEFRLHANLHN 166

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FWX2|NAC7_ARATH NAC domain-containing protein 7 OS=Arabidopsis thaliana GN=NAC007 PE=2 SV=2

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/140 (47%), Positives = 86/140 (61%), Gaps = 26/140 (18%)

Query: 16  AQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP----------- 63
           + +PPGFRFHP D+ELV  YL KKV      I  +  +DL K EPWD+            
Sbjct: 5   SHVPPGFRFHPTDEELVDYYLRKKVASKRIEIDFIKDIDLYKIEPWDLQELCKIGHEEQS 64

Query: 64  --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
                         G RTNRAT +G+WKATG+D+AI  + SL+GMRKTLVFY+GRAP G+
Sbjct: 65  DWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYLRHSLIGMRKTLVFYKGRAPNGQ 124

Query: 110 KTEWVMHEFRLEGPFANSPK 129
           K++W+MHE+RLE     +P+
Sbjct: 125 KSDWIMHEYRLETDENGTPQ 144

Transcription factor probably involved in xylem formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabidopsis thaliana GN=NAC043 PE=2 SV=2

 Score =  133 bits (334), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/133 (48%), Positives = 85/133 (63%), Gaps = 26/133 (19%)

Query: 15  EAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP---------- 63
           ++Q+PPGFRFHP ++EL+  YL KKV      + ++  VDLNK EPWDI           
Sbjct: 13  QSQVPPGFRFHPTEEELLQYYLRKKVNSIEIDLDVIRDVDLNKLEPWDIQEMCKIGTTPQ 72

Query: 64  ---------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKG 108
                          G RTNRATA+G+WKATG+D+ I   G  +GMRKTLVFY+GRAP G
Sbjct: 73  NDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSNGRRIGMRKTLVFYKGRAPHG 132

Query: 109 KKTEWVMHEFRLE 121
           +K++W+MHE+RL+
Sbjct: 133 QKSDWIMHEYRLD 145

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SV87|BRN2_ARATH Protein BEARSKIN1 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1

 Score =  132 bits (333), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 71/158 (44%), Positives = 95/158 (60%), Gaps = 29/158 (18%)

Query: 18  LPPGFRFHPRDDELVCDYLMKKVTHTN-ESILLAAVDLNKCEPWDIP------------- 63
           +PPGFRFHP D+EL+  YL KK+++   E  ++  VDLNK EPWD+              
Sbjct: 9   VPPGFRFHPTDEELLHYYLKKKISYQKFEMEVIREVDLNKLEPWDLQERCKIGSTPQNEW 68

Query: 64  ------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKT 111
                       G RTNRAT +G+WKATG+D+ I      +GMRKTLVFY+GRAP G+KT
Sbjct: 69  YFFSHKDRKYPTGSRTNRATHAGFWKATGRDKCIRNSYKKIGMRKTLVFYKGRAPHGQKT 128

Query: 112 EWVMHEFRLEGPFANSPKASSLKIGCCV-ECFTKREKF 148
           +W+MHE+RLE   A+ P+A+  + G  V   F K+  F
Sbjct: 129 DWIMHEYRLED--ADDPQANPSEDGWVVCRVFMKKNLF 164

Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M274|NAC66_ARATH NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1

 Score =  130 bits (328), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 61/133 (45%), Positives = 85/133 (63%), Gaps = 26/133 (19%)

Query: 15  EAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDI----------- 62
           ++Q+PPGFRFHP ++EL+  YL KK+++    + ++  +DLNK EPWDI           
Sbjct: 8   QSQVPPGFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQ 67

Query: 63  --------------PGLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKG 108
                          G RTNRAT  G+WKATG+D+ I   G  +GMRKTLVFY+GRAP G
Sbjct: 68  NDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYTNGDRIGMRKTLVFYKGRAPHG 127

Query: 109 KKTEWVMHEFRLE 121
           +K++W+MHE+RL+
Sbjct: 128 QKSDWIMHEYRLD 140

Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulates the secondary cell wall lignification of other tissues such as tracheary elements.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
357451393	306	NAC domain protein [Medicago truncatula]	0.733	0.405	0.709	2e-52
15148912	299	NAC domain protein NAC1 [Phaseolus vulga	0.733	0.414	0.702	4e-52
351728023	303	transcriptional factor NAC35 [Glycine ma	0.733	0.409	0.702	9e-52
255647843	302	unknown [Glycine max]	0.834	0.466	0.640	2e-51
351722075	302	NAC domain protein [Glycine max] gi|1879	0.834	0.466	0.640	3e-51
224096656	302	NAC domain protein, IPR003441 [Populus t	0.733	0.410	0.689	1e-50
410475411	302	NAC1 [Populus tremula x Populus alba]	0.733	0.410	0.689	2e-50
224083994	304	NAC domain protein, IPR003441 [Populus t	0.739	0.411	0.666	6e-50
255578170	316	NAC domain-containing protein 21/22, put	0.686	0.367	0.683	1e-49
225462221	300	PREDICTED: NAC domain-containing protein	0.721	0.406	0.664	1e-47

>gi|357451393|ref|XP_003595973.1| NAC domain protein [Medicago truncatula] gi|332739376|gb|AEE99077.1| NAC1 [Medicago truncatula] gi|355485021|gb|AES66224.1| NAC domain protein [Medicago truncatula]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 115/148 (77%), Gaps = 24/148 (16%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI MVEA+LPPGFRFHPRD+ELVCDYLMKKVTH+ +S L+  VDLNKCEPWDIP     
Sbjct: 2   SNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHS-DSFLMIDVDLNKCEPWDIPEAACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDRAILRKG+LVGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILRKGTLVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLK 134
           KG+KTEWVMHEFR+EGP    PK SS K
Sbjct: 121 KGRKTEWVMHEFRIEGPHG-PPKISSSK 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15148912|gb|AAK84883.1|AF402602_1 NAC domain protein NAC1 [Phaseolus vulgaris]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 115/148 (77%), Gaps = 24/148 (16%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI MVEA+LPPGFRFHPRD+ELVCDYLMKK+TH N+S+L+  VDLNKCEPWDIP     
Sbjct: 2   SNISMVEAKLPPGFRFHPRDEELVCDYLMKKLTH-NDSLLMIDVDLNKCEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDR ILRKG+LVGMRKTLVFY+GRAP
Sbjct: 61  GGKDWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLK 134
           KG+KTEWVMHEFR+EGP    PK SS K
Sbjct: 121 KGRKTEWVMHEFRIEGPHG-PPKVSSSK 147

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728023|ref|NP_001235901.1| transcriptional factor NAC35 [Glycine max] gi|184097800|gb|ACC66316.1| transcriptional factor NAC35 [Glycine max]

 Score =  207 bits (528), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 104/148 (70%), Positives = 114/148 (77%), Gaps = 24/148 (16%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI MVEA+LPPGFRFHPRD+ELVCDYLMKKV H N+S+L+  VDLNKCEPWDIP     
Sbjct: 2   SNISMVEAKLPPGFRFHPRDEELVCDYLMKKVAH-NDSLLMINVDLNKCEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDR+ILRKG+LVGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRSILRKGTLVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLK 134
           KG KTEWVMHEFR+EGP    PK SS K
Sbjct: 121 KGNKTEWVMHEFRIEGPHG-PPKISSSK 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647843|gb|ACU24381.1| unknown [Glycine max]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 117/164 (71%), Gaps = 23/164 (14%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI MVEA+LPPGFRFHPRD+ELVCDYLMKKV H N+S+LL  VDLNKCEPWDIP     
Sbjct: 2   SNISMVEAKLPPGFRFHPRDEELVCDYLMKKVQH-NDSLLLIDVDLNKCEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDR ILRKG+ VGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTHVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLA 150
           KG+KTEWVMHEFR+EGP      +SS +       F K  + LA
Sbjct: 121 KGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNSEVLA 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722075|ref|NP_001238255.1| NAC domain protein [Glycine max] gi|187940309|gb|ACD39385.1| NAC domain protein [Glycine max]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/164 (64%), Positives = 117/164 (71%), Gaps = 23/164 (14%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI MVEA+LPPGFRFHPRD+ELVCDYLMKKV H N+S+LL  VDLNKCEPWDIP     
Sbjct: 2   SNISMVEAKLPPGFRFHPRDEELVCDYLMKKVQH-NDSLLLIDVDLNKCEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDR ILRKG+ VGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTHVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLKIGCCVECFTKREKFLA 150
           KG+KTEWVMHEFR+EGP      +SS +       F K  + LA
Sbjct: 121 KGRKTEWVMHEFRIEGPHGPPKISSSKEDWVLCRVFYKNSEVLA 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096656|ref|XP_002310688.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222853591|gb|EEE91138.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 112/148 (75%), Gaps = 24/148 (16%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI  VEA+LPPGFRFHPRD+ELVCDYLMKK +H  +S+L+  VDLNKCEPWDIP     
Sbjct: 2   SNISFVEAKLPPGFRFHPRDEELVCDYLMKKASHC-DSLLMIEVDLNKCEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDR ILRKG+LVGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHILRKGTLVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLK 134
           KGKKT+WVMHEFRLEGP    PK SS K
Sbjct: 121 KGKKTDWVMHEFRLEGPLGQ-PKTSSEK 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|410475411|gb|AFV70627.1| NAC1 [Populus tremula x Populus alba]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/148 (68%), Positives = 112/148 (75%), Gaps = 24/148 (16%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI  VEA+LPPGFRFHPRD+ELVCDYLMKK +H  +S+L+  VDLNKCEPWDIP     
Sbjct: 2   SNISFVEAKLPPGFRFHPRDEELVCDYLMKKASHC-DSLLMIEVDLNKCEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            GLRTNRATASGYWKATGKDR ILRKG+LVGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHILRKGTLVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFANSPKASSLK 134
           KGKKT+WVMHEFRLEGP    PK SS K
Sbjct: 121 KGKKTDWVMHEFRLEGPLG-PPKTSSEK 147

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083994|ref|XP_002307195.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222856644|gb|EEE94191.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  202 bits (513), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 110/147 (74%), Gaps = 22/147 (14%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI  VEA+LPPGFRFHPRD+ELVCDYLM K +   +S+L+  VDLNKCEPWDIP     
Sbjct: 2   SNISFVEAKLPPGFRFHPRDEELVCDYLMNKASQCCDSLLMIEVDLNKCEPWDIPAARVG 61

Query: 64  ----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPK 107
                           GLRTNRATASGYWKATGKDR +LRKG+LVGMRKTLVFY+GRAPK
Sbjct: 62  GKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRHVLRKGTLVGMRKTLVFYQGRAPK 121

Query: 108 GKKTEWVMHEFRLEGPFANSPKASSLK 134
           GK+T+WVMHEFRLEGP    PK SS K
Sbjct: 122 GKRTDWVMHEFRLEGPLG-PPKISSDK 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578170|ref|XP_002529954.1| NAC domain-containing protein 21/22, putative [Ricinus communis] gi|223530552|gb|EEF32431.1| NAC domain-containing protein 21/22, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 95/139 (68%), Positives = 109/139 (78%), Gaps = 23/139 (16%)

Query: 9   NNIRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP----- 63
           +NI MVEA+LPPGFRFHPRD+ELVCDYLMKK+TH+ +S+LL  VDLNK EPWDIP     
Sbjct: 2   SNISMVEAKLPPGFRFHPRDEELVCDYLMKKITHS-DSLLLIEVDLNKSEPWDIPETACV 60

Query: 64  -----------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAP 106
                            G+RTNRATASGYWKATGKDR +LRKG+LVGMRKTLVFY+GRAP
Sbjct: 61  GGKEWYFYSQRDRKYATGVRTNRATASGYWKATGKDRPVLRKGTLVGMRKTLVFYQGRAP 120

Query: 107 KGKKTEWVMHEFRLEGPFA 125
           KG+K++WVMHEFRLEGP  
Sbjct: 121 KGRKSDWVMHEFRLEGPLG 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462221|ref|XP_002271458.1| PREDICTED: NAC domain-containing protein 21/22-like [Vitis vinifera]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 108/146 (73%), Gaps = 24/146 (16%)

Query: 11  IRMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESILLAAVDLNKCEPWDIP------- 63
           I MVE++LPPGFRFHP+D+EL+CDYLMKKVT ++ES L   VDLNKCEPWDIP       
Sbjct: 4   IEMVESRLPPGFRFHPKDEELICDYLMKKVT-SSESSLFIEVDLNKCEPWDIPEMACVGS 62

Query: 64  ---------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKG 108
                          GLRTNRAT SGYWKATGKDR IL KG+LVGMRKTLVFY+GRAPKG
Sbjct: 63  KDWYFYNQRDRKYATGLRTNRATLSGYWKATGKDRPILSKGTLVGMRKTLVFYQGRAPKG 122

Query: 109 KKTEWVMHEFRLEGPFANSPKASSLK 134
           KKT+WVMHEFRL+GP    P   SLK
Sbjct: 123 KKTDWVMHEFRLQGPLT-PPAIPSLK 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2012035	324	NAC1 "NAC domain containing pr	0.402	0.209	0.771	1.8e-46
TAIR|locus:2163153	336	NAC100 "NAC domain containing	0.402	0.202	0.742	5.7e-38
TAIR|locus:2172334	335	ANAC087 "Arabidopsis NAC domai	0.402	0.202	0.718	5.7e-38
TAIR|locus:2087037	318	NAC3 "NAC domain containing pr	0.449	0.238	0.657	4e-37
TAIR|locus:2160324	329	NAC080 "NAC domain containing	0.402	0.206	0.714	1.7e-36
TAIR|locus:2164895	285	NAC6 "NAC domain containing pr	0.479	0.284	0.619	1.7e-36
TAIR|locus:2095007	314	NAC058 "NAC domain containing	0.562	0.302	0.535	2.7e-36
TAIR|locus:2154684	375	CUC2 "CUP-SHAPED COTYLEDON 2"	0.366	0.165	0.718	5e-36
TAIR|locus:2095958	338	NAC046 "NAC domain containing	0.402	0.201	0.704	1.5e-35
TAIR|locus:2083656	310	CUC1 "CUP-SHAPED COTYLEDON1" [	0.420	0.229	0.657	2.4e-35

TAIR|locus:2012035 NAC1 "NAC domain containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.8e-46, Sum P(2) = 1.8e-46
 Identities = 54/70 (77%), Positives = 62/70 (88%)

Query:    64 GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGP 123
             GLRTNRATA+GYWKATGKDR ILRKG LVGMRKTLVFY+GRAP+G+KT+WVMHEFRL+G 
Sbjct:    89 GLRTNRATATGYWKATGKDRTILRKGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRLQG- 147

Query:   124 FANSPKASSL 133
              ++ P   SL
Sbjct:   148 -SHHPPNHSL 156

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0009734 "auxin mediated signaling pathway" evidence=TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

TAIR|locus:2163153 NAC100 "NAC domain containing protein 100" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 52/70 (74%), Positives = 59/70 (84%)

Query:    64 GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGP 123
             GLRTNRAT +GYWKATGKD+ I R  SLVGM+KTLVFYRGRAPKG+KT WVMHE+RLEG 
Sbjct:    85 GLRTNRATEAGYWKATGKDKEIYRGKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLEGK 144

Query:   124 FA--NSPKAS 131
             F+  N PK +
Sbjct:   145 FSAHNLPKTA 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2172334 ANAC087 "Arabidopsis NAC domain containing protein 87" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 5.7e-38, Sum P(2) = 5.7e-38
 Identities = 51/71 (71%), Positives = 61/71 (85%)

Query:    64 GLRTNRATASGYWKATGKDRAILR-KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEG 122
             G+RTNRAT SGYWKATGKD+ I + KG LVGM+KTLVFYRGRAPKG+KT WVMHE+RLEG
Sbjct:    90 GMRTNRATESGYWKATGKDKEIFKGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLEG 149

Query:   123 PFA--NSPKAS 131
              ++  N PK++
Sbjct:   150 KYSYYNLPKSA 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2087037 NAC3 "NAC domain containing protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
 Identities = 50/76 (65%), Positives = 59/76 (77%)

Query:    64 GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGP 123
             GLRTNRAT +GYWKATGKD+ I +  SLVGM+KTLVFY+GRAPKG KT WVMHE+RLEG 
Sbjct:    93 GLRTNRATKAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLEGK 152

Query:   124 FANSPKASSLKIGCCV 139
             FA    + + K  C +
Sbjct:   153 FAIDNLSKTAKNECVI 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IMP

TAIR|locus:2160324 NAC080 "NAC domain containing protein 80" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 50/70 (71%), Positives = 58/70 (82%)

Query:    64 GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGP 123
             GLRTNRAT +GYWKATGKD+ I R  SLVGM+KTLVFYRGRAPKG+KT WVMHE+RL+G 
Sbjct:    86 GLRTNRATQAGYWKATGKDKEIFRGKSLVGMKKTLVFYRGRAPKGQKTNWVMHEYRLDGK 145

Query:   124 FA--NSPKAS 131
              +  N PK +
Sbjct:   146 LSAHNLPKTA 155

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2164895 NAC6 "NAC domain containing protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
 Identities = 52/84 (61%), Positives = 62/84 (73%)

Query:    64 GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGP 123
             GLRTNRAT +GYWKATGKD+ I +  SLVGM+KTLVFY+GRAPKG KT WVMHE+RLEG 
Sbjct:    89 GLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGVKTNWVMHEYRLEGK 148

Query:   124 FA--NSPKASSLKIGCCVECFTKR 145
             +   N P+ +  +   C   F KR
Sbjct:   149 YCIENLPQTAKNEWVIC-RVFQKR 171

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IPI

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010150 "leaf senescence" evidence=IEP;IMP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2095007 NAC058 "NAC domain containing protein 58" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 53/99 (53%), Positives = 65/99 (65%)

Query:    64 GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGP 123
             GLRTNRAT +GYWK TGKD+ I R G LVGM+KTLVFY+GRAPKG+K+ WVMHE+RLE  
Sbjct:    74 GLRTNRATEAGYWKTTGKDKEIYRSGVLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLESK 133

Query:   124 FANSPKASSLKIGCCVECFTKREKFLANRAWEAAAMTTQ 162
                +P      + C V  F K     A +A E    ++Q
Sbjct:   134 QPFNPTNKEEWVVCRV--FEKSTA--AKKAQEQQPQSSQ 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2154684 CUC2 "CUP-SHAPED COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 5.0e-36, Sum P(2) = 5.0e-36
 Identities = 46/64 (71%), Positives = 55/64 (85%)

Query:    64 GLRTNRATASGYWKATGKDRAIL--RKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE 121
             GLRTNRAT +GYWKATGKDR I   +  +LVGM+KTLVFY+GRAPKG+K+ WVMHE+RLE
Sbjct:    86 GLRTNRATEAGYWKATGKDREIFSSKTCALVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 145

Query:   122 GPFA 125
             G F+
Sbjct:   146 GKFS 149

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0048366 "leaf development" evidence=IMP

GO:0048504 "regulation of timing of organ formation" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010160 "formation of organ boundary" evidence=IGI

TAIR|locus:2095958 NAC046 "NAC domain containing protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
 Identities = 50/71 (70%), Positives = 59/71 (83%)

Query:    64 GLRTNRATASGYWKATGKDRAILR-KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEG 122
             G+RTNRAT SGYWKATGKD+ I R KG LVGM+KTLVFY GRAPKG+KT WVMHE+RL+G
Sbjct:    89 GMRTNRATVSGYWKATGKDKEIFRGKGCLVGMKKTLVFYTGRAPKGEKTNWVMHEYRLDG 148

Query:   123 PFA--NSPKAS 131
              ++  N PK +
Sbjct:   149 KYSYHNLPKTA 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2083656 CUC1 "CUP-SHAPED COTYLEDON1" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 48/73 (65%), Positives = 59/73 (80%)

Query:    64 GLRTNRATASGYWKATGKDRAIL--RKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE 121
             GLRTNRAT +GYWKATGKDR I   +  SL+GM+KTLVFY+GRAPKG+K+ WVMHE+RL+
Sbjct:    89 GLRTNRATEAGYWKATGKDREIKSSKTKSLLGMKKTLVFYKGRAPKGEKSCWVMHEYRLD 148

Query:   122 GPFANSPKASSLK 134
             G F+    +SS K
Sbjct:   149 GKFSYHYISSSAK 161

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0048467 "gynoecium development" evidence=IGI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010072 "primary shoot apical meristem specification" evidence=TAS

GO:0048527 "lateral root development" evidence=TAS

GO:0051782 "negative regulation of cell division" evidence=IMP

GO:0010223 "secondary shoot formation" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009790 "embryo development" evidence=IGI

GO:0009908 "flower development" evidence=IGI;IMP

GO:0010014 "meristem initiation" evidence=IGI;IMP

GO:0010160 "formation of organ boundary" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	NAC070	NAC domain protein, IPR003441 (302 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_I7094	SubName- Full=Putative uncharacterized protein; (475 aa)							•		0.683
	gw1.182.27.1	hypothetical protein (512 aa)							•		0.621
	grail3.0250000201	hypothetical protein (225 aa)							•		0.621
	eugene3.02710006	hypothetical protein (185 aa)							•		0.621

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	8e-57

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  173 bits (442), Expect = 8e-57
 Identities = 70/130 (53%), Positives = 84/130 (64%), Gaps = 26/130 (20%)

Query: 18  LPPGFRFHPRDDELVCDYLMKKVTH--TNESILLAAVDLNKCEPWDIP------------ 63
           LPPGFRFHP D+ELV  YL +KV         ++  VD+ K EPWD+P            
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 64  -----------GLRTNRATASGYWKATGKDRAILRKGS-LVGMRKTLVFYRGRAPKGKKT 111
                      G RTNRAT SGYWKATGKD+ +L KG  +VGM+KTLVFY+GRAPKG+KT
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSKGGEVVGMKKTLVFYKGRAPKGEKT 120

Query: 112 EWVMHEFRLE 121
           +WVMHE+RLE
Sbjct: 121 DWVMHEYRLE 130

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.5e-39  Score=244.30  Aligned_cols=104  Identities=51%  Similarity=1.031  Sum_probs=84.6

Q ss_pred             CCCceEECCChHHHHHHHHhhhhcCCCCC--ceeeeccCCCCCCCCCC----------------------CcccccccCC
Q 030909           18 LPPGFRFHPRDDELVCDYLMKKVTHTNES--ILLAAVDLNKCEPWDIP----------------------GLRTNRATAS   73 (169)
Q Consensus        18 LP~G~RF~PTDeELI~~YL~~ki~g~~~~--~~I~~~Dvy~~~Pw~L~----------------------g~R~~R~~~~   73 (169)
                      |||||||+|||+|||.+||++|+.|.+++  .+|.++|||+.+||+|+                      |.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            89999999999999999999999997765  68999999999999998                      3567788999


Q ss_pred             ceEeecCCceEEee-CCeEeEEEEEeeeeecCCCCCCccCeEEEEEEeC
Q 030909           74 GYWKATGKDRAILR-KGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLE  121 (169)
Q Consensus        74 G~Wk~~g~~~~I~~-~g~~iG~kr~l~F~~~~~~~~~kt~W~M~EY~l~  121 (169)
                      |+||.+|+.+.|.+ +|.+||+|++|+||.++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDPGGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE-TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccccceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            99999999999998 9999999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-27
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		2e-27
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-27

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 26/152 (17%)
Query: 13  MVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP-------- 63
           + +  LPPGFRF+P D+EL+  YL +K    + S+ L+A +DL K +PW +P        
Sbjct: 12  LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71
Query: 64  --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
                         G R NR   SGYWKATG D+ I  +G  VG++K LVFY G+APKG 
Sbjct: 72  EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGT 131
Query: 110 KTEWVMHEFRLEGPFANSPKASSLKIGCCVEC 141
           KT W+MHE+RL  P   S +  S K+   V C
Sbjct: 132 KTNWIMHEYRLIEP---SRRNGSTKLDDWVLC 160

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 85/152 (55%), Gaps = 26/152 (17%)
Query: 13  MVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP-------- 63
           + +  LPPGFRF+P D+EL+  YL +K    + S+ L+A +DL K +PW +P        
Sbjct: 15  LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 74
Query: 64  --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
                         G R NR   SGYWKATG D+ I  +G  VG++K LVFY G+APKG 
Sbjct: 75  EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGT 134
Query: 110 KTEWVMHEFRLEGPFANSPKASSLKIGCCVEC 141
           KT W+MHE+RL  P   S +  S K+   V C
Sbjct: 135 KTNWIMHEYRLIEP---SRRNGSTKLDDWVLC 163

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  117 bits (293), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/130 (45%), Positives = 77/130 (59%), Gaps = 23/130 (17%)
Query: 14  VEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP--------- 63
            E  LPPGFRFHP DDELV  YL +K       + ++A VDL K +PWD+P         
Sbjct: 11  AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGARE 70
Query: 64  -------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKK 110
                        G R NRA  +GYWKATG D+ +  +G  +G++K LVFY G+AP+G K
Sbjct: 71  WYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVK 130
Query: 111 TEWVMHEFRL 120
           T+W+MHE+RL
Sbjct: 131 TDWIMHEYRL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
1ut7_A	171	No apical meristem protein; transcription regulati	3e-64
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	2e-63

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  193 bits (493), Expect = 3e-64
 Identities = 59/142 (41%), Positives = 79/142 (55%), Gaps = 23/142 (16%)

Query: 13  MVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP-------- 63
           + +  LPPGFRF+P D+EL+  YL +K    + S+ L+A +DL K +PW +P        
Sbjct: 12  LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71

Query: 64  --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
                         G R NR   SGYWKATG D+ I  +G  VG++K LVFY G+APKG 
Sbjct: 72  EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGT 131

Query: 110 KTEWVMHEFRLEGPFANSPKAS 131
           KT W+MHE+RL  P   +    
Sbjct: 132 KTNWIMHEYRLIEPSRRNGSTK 153

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  192 bits (489), Expect = 2e-63
 Identities = 66/161 (40%), Positives = 90/161 (55%), Gaps = 27/161 (16%)

Query: 15  EAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP---------- 63
           E  LPPGFRFHP DDELV  YL +K       + ++A VDL K +PWD+P          
Sbjct: 12  ELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREW 71

Query: 64  ------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKT 111
                       G R NRA  +GYWKATG D+ +  +G  +G++K LVFY G+AP+G KT
Sbjct: 72  YFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKT 131

Query: 112 EWVMHEFRLEGPF--ANSPKASSLKIGCCVEC--FTKREKF 148
           +W+MHE+RL      A   K  SL++   V C  + K+ ++
Sbjct: 132 DWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEW 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
1ut7_A	171	No apical meristem protein; transcription regulati	100.0
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=7.7e-50  Score=313.36  Aligned_cols=134  Identities=45%  Similarity=0.821  Sum_probs=114.5

Q ss_pred             ccccCCCCCceEECCChHHHHHHHHhhhhcCCCCC-ceeeeccCCCCCCCCCC----------------------Ccccc
Q 030909           12 RMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP----------------------GLRTN   68 (169)
Q Consensus        12 ~~~~~~LP~G~RF~PTDeELI~~YL~~ki~g~~~~-~~I~~~Dvy~~~Pw~L~----------------------g~R~~   68 (169)
                      ...++.|||||||+|||||||.|||++|+.|.+++ .+|.++|||.+|||+||                      |.|.+
T Consensus        11 ~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~~~g~R~~   90 (171)
T 1ut7_A           11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (171)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             cccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEeccccccCCCCccc
Confidence            34578899999999999999999999999998876 78999999999999998                      56789


Q ss_pred             cccCCceEeecCCceEEeeCCeEeEEEEEeeeeecCCCCCCccCeEEEEEEeCCCCCCC-CCCCCCeEEEEEEeecCc
Q 030909           69 RATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANS-PKASSLKIGCCVECFTKR  145 (169)
Q Consensus        69 R~~~~G~Wk~~g~~~~I~~~g~~iG~kr~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~-~~~~~~~VlCrI~~k~~~  145 (169)
                      |++++|+||++|+++.|..++.+||+|++|+||.++++++.+|+|+||||+|....... .....++||||||+|+..
T Consensus        91 R~t~~G~Wk~tG~~k~I~~~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv~~k~~~  168 (171)
T 1ut7_A           91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSS  168 (171)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC--
T ss_pred             ccCCCCEEeccCCCceEEecCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEEEEcCCC
Confidence            99999999999999999999999999999999999999999999999999998765321 123467899999999764

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=1.1e-49  Score=313.01  Aligned_cols=132  Identities=45%  Similarity=0.856  Sum_probs=116.1

Q ss_pred             ccCCCCCceEECCChHHHHHHHHhhhhcCCCCC-ceeeeccCCCCCCCCCC----------------------Ccccccc
Q 030909           14 VEAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP----------------------GLRTNRA   70 (169)
Q Consensus        14 ~~~~LP~G~RF~PTDeELI~~YL~~ki~g~~~~-~~I~~~Dvy~~~Pw~L~----------------------g~R~~R~   70 (169)
                      .++.|||||||+|||||||.|||++|+.|.+++ .+|.++|||.++||+||                      |.|.+|+
T Consensus        11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR~   90 (174)
T 3ulx_A           11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNRA   90 (174)
T ss_dssp             STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCEE
T ss_pred             cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCceee
Confidence            367899999999999999999999999998776 79999999999999998                      5678999


Q ss_pred             cCCceEeecCCceEEeeCCeEeEEEEEeeeeecCCCCCCccCeEEEEEEeCCCCCCC------CCCCCCeEEEEEEeecC
Q 030909           71 TASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANS------PKASSLKIGCCVECFTK  144 (169)
Q Consensus        71 ~~~G~Wk~~g~~~~I~~~g~~iG~kr~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~------~~~~~~~VlCrI~~k~~  144 (169)
                      +++|+||++|+++.|..+|.+||+|++|+||.++++++.+|+|+||||+|.++....      ....+++||||||+|++
T Consensus        91 t~~G~WkatG~dk~I~~~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~K~~  170 (174)
T 3ulx_A           91 AGNGYWKATGADKPVAPRGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKN  170 (174)
T ss_dssp             ETTEEEEECSCCEEECCSSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEESCC
T ss_pred             cCCceEccCCCCcEEeeCCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEEcCC
Confidence            999999999999999998999999999999999999999999999999998764321      11245789999999975


Q ss_pred             c
Q 030909          145 R  145 (169)
Q Consensus       145 ~  145 (169)
                      .
T Consensus       171 ~  171 (174)
T 3ulx_A          171 E  171 (174)
T ss_dssp             -
T ss_pred             C
Confidence            3

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	4e-46

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  146 bits (370), Expect = 4e-46
 Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 28/158 (17%)

Query: 13  MVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNESI-LLAAVDLNKCEPWDIP-------- 63
           + +  LPPGFRF+P D+EL+  YL +K    + S+ L+A +DL K +PW +P        
Sbjct: 12  LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEK 71

Query: 64  --------------GLRTNRATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGK 109
                         G R NR   SGYWKATG D+ I  +G  VG++K LVFY G+APKG 
Sbjct: 72  EWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGT 131

Query: 110 KTEWVMHEFRLEGPFANSPKASSLKIGCCVEC--FTKR 145
           KT W+MHE+RL  P   S +  S K+   V C  + K+
Sbjct: 132 KTNWIMHEYRLIEP---SRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.6e-49  Score=307.00  Aligned_cols=132  Identities=45%  Similarity=0.833  Sum_probs=113.7

Q ss_pred             ccccCCCCCceEECCChHHHHHHHHhhhhcCCCCC-ceeeeccCCCCCCCCCC----------------------Ccccc
Q 030909           12 RMVEAQLPPGFRFHPRDDELVCDYLMKKVTHTNES-ILLAAVDLNKCEPWDIP----------------------GLRTN   68 (169)
Q Consensus        12 ~~~~~~LP~G~RF~PTDeELI~~YL~~ki~g~~~~-~~I~~~Dvy~~~Pw~L~----------------------g~R~~   68 (169)
                      ...+++|||||||+|||+|||.+||.+|+.|.+++ .+|.++|||+++||+||                      |.|.+
T Consensus        11 ~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~~~g~r~~   90 (166)
T d1ut7a_          11 PLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKYPNGSRPN   90 (166)
T ss_dssp             -CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC-------CC
T ss_pred             ccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeeccccCCCCccc
Confidence            45578999999999999999999999999998886 79999999999999998                      46778


Q ss_pred             cccCCceEeecCCceEEeeCCeEeEEEEEeeeeecCCCCCCccCeEEEEEEeCCCCCCC-CCCCCCeEEEEEEeec
Q 030909           69 RATASGYWKATGKDRAILRKGSLVGMRKTLVFYRGRAPKGKKTEWVMHEFRLEGPFANS-PKASSLKIGCCVECFT  143 (169)
Q Consensus        69 R~~~~G~Wk~~g~~~~I~~~g~~iG~kr~l~F~~~~~~~~~kt~W~M~EY~l~~~~~~~-~~~~~~~VlCrI~~k~  143 (169)
                      |++++|+||++|+++.|.++|.+||+|++|+||+++.+++.+|+|+||||+|.++.... ....+++||||||+|+
T Consensus        91 R~~g~G~Wk~~g~~~~i~~~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCrI~~Kk  166 (166)
T d1ut7a_          91 RVAGSGYWKATGTDKIISTEGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQ  166 (166)
T ss_dssp             EEETTEEEEEEEEEEEEEETTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEEEECC
T ss_pred             cccCCCEecccCCCceEecCCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEEEEecC
Confidence            99999999999999999999999999999999999999999999999999998765431 2234578999999984