Citrus Sinensis ID: 030914

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHccccccEEEcccccHHHHHcccccccccccccEEccEEccHHHHHHHHHHcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHcccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccccEEEEEcEEEcHHHHHHHHHHccHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MARSLSNLIFKGiasypsarssrivsgslyhngmkystdvpndpdthedfrptskvdasglslKEVVEqdvkenpvmlymkgvpefpqcgfssLAVRVLGAynvpisarniledpeLKSAVKAFshwptfpqifikgefiggsdiILNMHQSGELKEKLKGIASNQKSD
Flexible Loop (DISEMBL)
MARSLSNLIFKgiasypsarssRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPtskvdasglslkEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSgelkeklkgiasnqksd
Low Complexity Region (SEG)
MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD
Disordered region (IsUnstruct)
*******LIFKGIA********************************************************VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM********************
Disordered Region (DISOPRED)
******************************************************************VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEK***********
Disordered Region (DISEMBL)
MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKE************
Disordered Region (DISPRO)
************************************************************LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQK**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q8LBK6	169	Monothiol glutaredoxin-S1	yes	no	0.982	0.982	0.702	2e-64
Q0JM76	185	Monothiol glutaredoxin-S4	yes	no	0.988	0.902	0.494	2e-46
Q0JQ97	185	Monothiol glutaredoxin-S1	no	no	0.964	0.881	0.516	2e-45
Q6YFE4	143	Monothiol glutaredoxin-5,	N/A	no	0.573	0.678	0.49	5e-25
Q555C8	143	Monothiol glutaredoxin-5,	yes	no	0.562	0.664	0.494	5e-25
Q9ZPH2	488	Monothiol glutaredoxin-S1	no	no	0.923	0.319	0.397	7e-25
O30824	107	Glutaredoxin-4 OS=Haemoph	yes	no	0.591	0.934	0.48	2e-24
Q9HDW8	146	Monothiol glutaredoxin-5	yes	no	0.585	0.678	0.490	2e-24
Q86SX6	157	Glutaredoxin-related prot	yes	no	0.550	0.592	0.489	2e-24
Q80Y14	152	Glutaredoxin-related prot	yes	no	0.550	0.611	0.489	2e-24

>sp|Q8LBK6|GRS15_ARATH Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2

 Score =  244 bits (623), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 142/168 (84%), Gaps = 2/168 (1%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGM-KYSTDVPNDPDTHEDFRPTSKVDA- 58
           MA SLS+ + KGIA+  + RSSR+ S S+Y NGM ++S+ VP+D DTH+DF+PT KV   
Sbjct: 1   MAASLSSRLIKGIANLKAVRSSRLTSASVYQNGMMRFSSTVPSDSDTHDDFKPTQKVPPD 60

Query: 59  SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118
           S  SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVRVL  YNVPIS+RNILED ELK
Sbjct: 61  STDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELK 120

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           +AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ NQ
Sbjct: 121 NAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGNQ 168

May only reduce GSH-thiol disulfides, but not protein disulfides.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JM76|GRXS4_ORYSJ Monothiol glutaredoxin-S4, mitochondrial OS=Oryza sativa subsp. japonica GN=GRXS4 PE=2 SV=1

 Score =  184 bits (467), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 91/184 (49%), Positives = 125/184 (67%), Gaps = 17/184 (9%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYS---------------TDVPNDPD 45
           MAR +S+ + +G+     + +   V+    H    YS               T V  DPD
Sbjct: 1   MARLMSSALIRGLVRSSCSPTVAAVAQPTIHQFRNYSSGLGGDSTATGDSSSTRVAADPD 60

Query: 46  THEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105
           TH+DF+PT+K  +S +S  ++V QD+KENPV++YMKG P+ P+CGFS+LAVRVL  Y+VP
Sbjct: 61  THQDFQPTTK--SSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVLKQYDVP 118

Query: 106 ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASN 165
           ISAR+IL D +LK +VKA ++WPTFPQIFIKGEF+GGSDIIL+MHQ G+LK+ L  IA  
Sbjct: 119 ISARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIAQK 178

Query: 166 QKSD 169
           ++ +
Sbjct: 179 REQN 182

May only reduce GSH-thiol disulfides, but not protein disulfides.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0JQ97|GRXS1_ORYSJ Monothiol glutaredoxin-S1, mitochondrial OS=Oryza sativa subsp. japonica GN=GRXS1 PE=2 SV=2

 Score =  181 bits (458), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/184 (51%), Positives = 123/184 (66%), Gaps = 21/184 (11%)

Query: 1   MARSLSNLIFKGIASYPSARSSRI--VSGSLYHNGMKYS---------------TDVPND 43
           MAR +S  + +G+    S+R+ R+  VS         YS               T V  D
Sbjct: 1   MARLVSTALMRGLVR--SSRAPRVAAVSQPAIQQFRNYSPGLGGDSRGSGDSSSTRVAAD 58

Query: 44  PDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN 103
           PDTH+DF+PTSK  +S +S  ++V QD+KENPV++YMKG PE P CGFS+LAV+VL  Y+
Sbjct: 59  PDTHQDFQPTSK--SSNMSFDDIVAQDIKENPVLIYMKGFPESPMCGFSALAVKVLKLYD 116

Query: 104 VPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
           VPISAR+IL D +LK  VKA ++WPTFPQIFIKGEF+GGSDIIL+MHQ G+LK+ L  IA
Sbjct: 117 VPISARDILGDLKLKECVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVLGDIA 176

Query: 164 SNQK 167
              +
Sbjct: 177 QKHE 180

May only reduce GSH-thiol disulfides, but not protein disulfides.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6YFE4|GLRX5_LACKL Monothiol glutaredoxin-5, mitochondrial OS=Lachancea kluyveri GN=GRX5 PE=3 SV=1

 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 69/100 (69%), Gaps = 3/100 (3%)

Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILEDPELKSA 120
           K+ +E  ++  PV+L+MKG PEFPQCGFS   + +LG   V     +A N+LED EL+  
Sbjct: 33  KQAIESAIESAPVVLFMKGTPEFPQCGFSKATINMLGQQGVDPMKFAAYNVLEDAELREG 92

Query: 121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           VK FS WPT PQ+++  EF+GG DI++NM Q+GEL + L+
Sbjct: 93  VKEFSEWPTIPQLYVNKEFVGGCDIVMNMAQTGELAKLLE 132

Monothiol glutaredoxin involved in iron-sulfur biogenesis.

Lachancea kluyveri (taxid: 4934)

>sp|Q555C8|GLRX5_DICDI Monothiol glutaredoxin-5, mitochondrial OS=Dictyostelium discoideum GN=grx5 PE=3 SV=1

 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 72/95 (75%)

Query: 65  EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
           E VE  V E+P +LYMKG+PE P+CGFS+ AVR+L A     ++ N+L++ +++ AVK F
Sbjct: 39  EDVETQVAESPCILYMKGIPERPECGFSNTAVRILQAEGAVFTSYNVLKNNDMREAVKEF 98

Query: 125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
             WPT PQ+++KG+FIGG+DI++ +++SGEL + L
Sbjct: 99  GDWPTIPQLYVKGQFIGGADILMGLYKSGELSKLL 133

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9ZPH2|GRS17_ARATH Monothiol glutaredoxin-S17 OS=Arabidopsis thaliana GN=GRXS17 PE=2 SV=1

 Score =  113 bits (282), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/161 (39%), Positives = 91/161 (56%), Gaps = 5/161 (3%)

Query: 4   SLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHED-FRPTSKVDASGLS 62
           SL+N + K   S  SA  +   S  L        T   N   + +D  +P S  DA    
Sbjct: 97  SLANKVGKVAGSSTSAEPAAPASLGLAAGPTILETVKENAKASLQDRAQPVSTADA---- 152

Query: 63  LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK 122
           LK  +E+    +PVML+MKG+PE P+CGFS   V +L   NV   + +IL D E++  +K
Sbjct: 153 LKSRLEKLTNSHPVMLFMKGIPEEPRCGFSRKVVDILKEVNVDFGSFDILSDNEVREGLK 212

Query: 123 AFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
            FS+WPTFPQ++  GE +GG+DI + MH+SGELK+  K + 
Sbjct: 213 KFSNWPTFPQLYCNGELLGGADIAIAMHESGELKDAFKDLG 253

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|O30824|GLRX4_HAEDU Glutaredoxin-4 OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=grxD PE=3 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/100 (48%), Positives = 69/100 (69%)

Query: 67  VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH 126
           ++Q + ENP++LYMKG P+FP CGFS+ AV  +    VP    +IL +P+++S +  F++
Sbjct: 7   IKQQINENPILLYMKGSPKFPSCGFSARAVEAIIQCQVPFGYVDILTNPDIRSELPKFAN 66

Query: 127 WPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           WPTFPQ++++GE IGG DIIL M Q GEL   LK  A+  
Sbjct: 67  WPTFPQLWVEGELIGGCDIILEMFQKGELHTLLKETATKH 106

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters.

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

>sp|Q9HDW8|GLRX5_SCHPO Monothiol glutaredoxin-5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=grx5 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 72/102 (70%), Gaps = 3/102 (2%)

Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDPELKSA 120
           ++ +EQ VKE+P++L+MKG P  P CGFS  A+++L   NV    +   N+L + EL+  
Sbjct: 26  RQALEQAVKEDPIVLFMKGTPTRPMCGFSLKAIQILSLENVASDKLVTYNVLSNDELREG 85

Query: 121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 162
           +K FS WPT PQ++I GEF+GGSDI+ +MH+SGEL + LK I
Sbjct: 86  IKEFSDWPTIPQLYINGEFVGGSDILASMHKSGELHKILKEI 127

Thiol reductase involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis. Required for integrity of mitochondrial DNA. May play a crucial role in responses to nitrosative and osmotic stresses.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q86SX6|GLRX5_HUMAN Glutaredoxin-related protein 5, mitochondrial OS=Homo sapiens GN=GLRX5 PE=1 SV=2

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 71  VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPT 129
           VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT
Sbjct: 49  VKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPT 108

Query: 130 FPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
            PQ+++ GEF+GG DI+L MHQ+G+L E+LK + 
Sbjct: 109 IPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 142

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis. Required for normal regulation of hemoglobin synthesis by the iron-sulfur protein ACO1.

Homo sapiens (taxid: 9606)

>sp|Q80Y14|GLRX5_MOUSE Glutaredoxin-related protein 5, mitochondrial OS=Mus musculus GN=Glrx5 PE=2 SV=2

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 72/94 (76%), Gaps = 1/94 (1%)

Query: 71  VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPT 129
           VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT
Sbjct: 45  VKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPT 104

Query: 130 FPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
            PQ+++ GEF+GG DI+L MHQ+G+L E+LK + 
Sbjct: 105 IPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 138

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis. Required for normal regulation of hemoglobin synthesis by the iron-sulfur protein ACO1. May protect cells against apoptosis due to reactive oxygen species and oxidative stress.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
449469010	171	PREDICTED: monothiol glutaredoxin-S15, m	1.0	0.988	0.752	1e-72
225442841	170	PREDICTED: monothiol glutaredoxin-S15, m	0.988	0.982	0.754	2e-72
255553075	169	Monothiol glutaredoxin-4, putative [Rici	1.0	1.0	0.739	3e-72
147814938	409	hypothetical protein VITISV_033251 [Viti	0.988	0.408	0.692	2e-69
388494312	163	unknown [Lotus japonicus]	0.958	0.993	0.730	1e-64
317106758	148	JHL25H03.16 [Jatropha curcas]	0.863	0.986	0.767	1e-64
297834440	169	glutaredoxin family protein [Arabidopsis	0.982	0.982	0.696	7e-63
18400858	169	monothiol glutaredoxin-S15 [Arabidopsis	0.982	0.982	0.702	8e-63
21592763	169	unknown [Arabidopsis thaliana]	0.982	0.982	0.696	1e-62
388519223	164	unknown [Lotus japonicus]	0.958	0.987	0.704	3e-62

>gi|449469010|ref|XP_004152214.1| PREDICTED: monothiol glutaredoxin-S15, mitochondrial-like [Cucumis sativus] gi|449484186|ref|XP_004156810.1| PREDICTED: monothiol glutaredoxin-S15, mitochondrial-like [Cucumis sativus]

 Score =  277 bits (708), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 128/170 (75%), Positives = 154/170 (90%), Gaps = 1/170 (0%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSL-YHNGMKYSTDVPNDPDTHEDFRPTSKVDAS 59
           MA+SLSNL+FKG+A  P+ R+SRIV   L Y +GM+YST VPN+PDTH+DF+PT+K++ S
Sbjct: 2   MAKSLSNLLFKGLAGLPATRTSRIVVPGLNYQHGMRYSTTVPNEPDTHDDFKPTNKLENS 61

Query: 60  GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKS 119
           GLSL++VVEQDV++NPVM+YMKGVP+ PQCGFS+LAVRVL  YNVP+SARNILED ELKS
Sbjct: 62  GLSLRDVVEQDVRQNPVMIYMKGVPDVPQCGFSALAVRVLKLYNVPLSARNILEDAELKS 121

Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
           AVK+FSHWPTFPQIFIKGEFIGGSDIILN+HQSGELKEKL  IA+NQK++
Sbjct: 122 AVKSFSHWPTFPQIFIKGEFIGGSDIILNLHQSGELKEKLNDIAANQKTE 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442841|ref|XP_002285351.1| PREDICTED: monothiol glutaredoxin-S15, mitochondrial isoform 1 [Vitis vinifera] gi|297743395|emb|CBI36262.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 152/167 (91%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASG 60
           MARSLSN   KGI+S+PSAR S +VSGS++ NGM+YST VPNDPDTH+DF+ T+K+++SG
Sbjct: 1   MARSLSNAFLKGISSFPSARFSTMVSGSIFQNGMRYSTTVPNDPDTHDDFKSTNKLESSG 60

Query: 61  LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA 120
           L+L+++VEQDVK+NPVM+YMKGVP+ P+CGFSSLAVRVL  YNVP+SARNILEDPELK A
Sbjct: 61  LALQDIVEQDVKDNPVMIYMKGVPDVPRCGFSSLAVRVLKEYNVPLSARNILEDPELKIA 120

Query: 121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQK 167
           VK FSHWPTFPQIFIKGEFIGGSDIILNMHQ+GELKEKLK +++ Q+
Sbjct: 121 VKKFSHWPTFPQIFIKGEFIGGSDIILNMHQTGELKEKLKDVSAPQE 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553075|ref|XP_002517580.1| Monothiol glutaredoxin-4, putative [Ricinus communis] gi|223543212|gb|EEF44744.1| Monothiol glutaredoxin-4, putative [Ricinus communis]

 Score =  275 bits (704), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 153/169 (90%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASG 60
           MA++LSN++ K IA   +ARSSR+VSGS  HNGM+YST VP DPDTHEDF+P +K++ SG
Sbjct: 1   MAKTLSNIVLKSIAGLSAARSSRLVSGSYCHNGMRYSTTVPKDPDTHEDFQPNNKLENSG 60

Query: 61  LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA 120
           LSLK+VVEQDVK+NPVM+YMKGVP+ PQCGFS+LAVRVL  YN P+SARNILE+PELKSA
Sbjct: 61  LSLKDVVEQDVKDNPVMIYMKGVPDLPQCGFSALAVRVLKQYNTPLSARNILENPELKSA 120

Query: 121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
           VK+FS+WPTFPQIFIKGEFIGGSDII+++HQSGELK+KL+ IA+N+KS+
Sbjct: 121 VKSFSNWPTFPQIFIKGEFIGGSDIIMDLHQSGELKQKLQDIATNEKSN 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147814938|emb|CAN74745.1| hypothetical protein VITISV_033251 [Vitis vinifera]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/182 (69%), Positives = 152/182 (83%), Gaps = 15/182 (8%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIV---------------SGSLYHNGMKYSTDVPNDPD 45
           MARSLSN   KGI+S+PSAR S +V               SGS++ NGM+YST VPNDPD
Sbjct: 225 MARSLSNAFLKGISSFPSARFSTMVRTKIYGTVIQFFNQVSGSIFQNGMRYSTTVPNDPD 284

Query: 46  THEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105
           TH+DF+ T+K+++SGL+L+++VEQDVK+NPVM+YMKGVP+ P+CGFSSLAVRVL  YNVP
Sbjct: 285 THDDFKSTNKLESSGLALQDIVEQDVKDNPVMIYMKGVPDVPRCGFSSLAVRVLKEYNVP 344

Query: 106 ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASN 165
           +SARNILEDPELK AVK FSHWPTFPQIFIKGEFIGGSDIILNMHQ+GELKEKLK +++ 
Sbjct: 345 LSARNILEDPELKIAVKKFSHWPTFPQIFIKGEFIGGSDIILNMHQTGELKEKLKDVSAP 404

Query: 166 QK 167
           Q+
Sbjct: 405 QE 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494312|gb|AFK35222.1| unknown [Lotus japonicus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 142/167 (85%), Gaps = 5/167 (2%)

Query: 1   MARSLSNLIFKGIASYPSARS-SRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDAS 59
           MA SL NL+FKGIA    ARS SR ++GS Y+  M+YST V ND DTH+DF+P +K++ S
Sbjct: 1   MATSLKNLLFKGIA----ARSLSRPLNGSFYNYRMRYSTTVSNDSDTHDDFKPANKLENS 56

Query: 60  GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKS 119
           G SL+ +VEQDVK+NPVM+YMKGVPE+PQCGFSSLAVRVL  Y+V ISARNILED ELK+
Sbjct: 57  GTSLENIVEQDVKDNPVMIYMKGVPEYPQCGFSSLAVRVLNLYDVSISARNILEDAELKN 116

Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           AVKAFS+WPTFPQIFIKGEF+GGSDIILNMHQ+GELKEKLK I S Q
Sbjct: 117 AVKAFSNWPTFPQIFIKGEFVGGSDIILNMHQTGELKEKLKDITSKQ 163

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106758|dbj|BAJ53252.1| JHL25H03.16 [Jatropha curcas]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 112/146 (76%), Positives = 135/146 (92%)

Query: 24  IVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGV 83
            VSGS Y+NGM+YST VPNDPDTHEDF+P  K ++SG+SL ++VEQDVK+NPVM+YMKGV
Sbjct: 3   FVSGSFYYNGMRYSTTVPNDPDTHEDFQPNIKTESSGVSLNDIVEQDVKDNPVMIYMKGV 62

Query: 84  PEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS 143
           P++PQCGFS+LAVRVL  YNVP+SARNILE+PELKSAVK+FSHWPTFPQIFIKGEFIGGS
Sbjct: 63  PDYPQCGFSALAVRVLKQYNVPLSARNILENPELKSAVKSFSHWPTFPQIFIKGEFIGGS 122

Query: 144 DIILNMHQSGELKEKLKGIASNQKSD 169
           DIIL++HQ GELKEKL+ +A+N+KS+
Sbjct: 123 DIILDLHQKGELKEKLQDLAANEKSE 148

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834440|ref|XP_002885102.1| glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata] gi|297330942|gb|EFH61361.1| glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 140/168 (83%), Gaps = 2/168 (1%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGM-KYSTDVPNDPDTHEDFRPTSKV-DA 58
           MA SLS  + KGIA+  + RSSR+ S S+Y NGM ++S+ VP+D DTH+DF+PT K    
Sbjct: 1   MAASLSTRLLKGIANLQAVRSSRLTSASVYQNGMMRFSSTVPSDSDTHDDFKPTQKAPSG 60

Query: 59  SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118
           S  SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVRVL  YNVPIS+RNILED ELK
Sbjct: 61  STDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELK 120

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           +AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ NQ
Sbjct: 121 NAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGNQ 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400858|ref|NP_566522.1| monothiol glutaredoxin-S15 [Arabidopsis thaliana] gi|79313249|ref|NP_001030704.1| monothiol glutaredoxin-S15 [Arabidopsis thaliana] gi|119370633|sp|Q8LBK6.2|GRS15_ARATH RecName: Full=Monothiol glutaredoxin-S15, mitochondrial; Short=AtGrxS15; Flags: Precursor gi|11994338|dbj|BAB02297.1| unnamed protein product [Arabidopsis thaliana] gi|30102572|gb|AAP21204.1| At3g15660 [Arabidopsis thaliana] gi|110743466|dbj|BAE99619.1| hypothetical protein [Arabidopsis thaliana] gi|222424054|dbj|BAH19988.1| AT3G15660 [Arabidopsis thaliana] gi|332642189|gb|AEE75710.1| monothiol glutaredoxin-S15 [Arabidopsis thaliana] gi|332642190|gb|AEE75711.1| monothiol glutaredoxin-S15 [Arabidopsis thaliana]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 142/168 (84%), Gaps = 2/168 (1%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGM-KYSTDVPNDPDTHEDFRPTSKVDA- 58
           MA SLS+ + KGIA+  + RSSR+ S S+Y NGM ++S+ VP+D DTH+DF+PT KV   
Sbjct: 1   MAASLSSRLIKGIANLKAVRSSRLTSASVYQNGMMRFSSTVPSDSDTHDDFKPTQKVPPD 60

Query: 59  SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118
           S  SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVRVL  YNVPIS+RNILED ELK
Sbjct: 61  STDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELK 120

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           +AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ NQ
Sbjct: 121 NAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGNQ 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592763|gb|AAM64712.1| unknown [Arabidopsis thaliana]

 Score =  244 bits (622), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 142/168 (84%), Gaps = 2/168 (1%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGM-KYSTDVPNDPDTHEDFRPTSKVDA- 58
           MA SLS+ + KGIA+  + RSSR+ S S+Y NGM ++S+ VP+D DTH+DF+PT KV   
Sbjct: 1   MAASLSSRLIKGIANLKAVRSSRLTSASVYQNGMMRFSSTVPSDSDTHDDFKPTQKVPPD 60

Query: 59  SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118
           S  SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVR+L  YNVPIS+RNILED ELK
Sbjct: 61  STDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRILQQYNVPISSRNILEDQELK 120

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           +AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ NQ
Sbjct: 121 NAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGNQ 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519223|gb|AFK47673.1| unknown [Lotus japonicus]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/166 (70%), Positives = 138/166 (83%), Gaps = 4/166 (2%)

Query: 1   MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGMKYSTDVPNDPDTHEDFRPTSKVDASG 60
           MA+SLS+++FKGIA    ARS      S  + GM+  T V +DPDTH+DF+P +K++ + 
Sbjct: 3   MAKSLSSILFKGIA----ARSLTTPMTSSCYLGMRNFTKVSDDPDTHDDFKPANKLEGTA 58

Query: 61  LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA 120
           +SL  VVEQDVK+NPVM+YMKGVPEFPQCGFSSLAVRVL  Y+VP+SARNILED ELK+A
Sbjct: 59  ISLSNVVEQDVKDNPVMIYMKGVPEFPQCGFSSLAVRVLKHYDVPLSARNILEDAELKNA 118

Query: 121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           VKAFSHWPTFPQIFIKGEF+GGSDIILNMHQ+GELKEKLK I S Q
Sbjct: 119 VKAFSHWPTFPQIFIKGEFVGGSDIILNMHQTGELKEKLKDIVSKQ 164

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2093297	169	GRX4 "glutaredoxin 4" [Arabido	0.982	0.982	0.696	1e-59
UNIPROTKB|Q606E0	110	MCA2078 "Glutaredoxin" [Methyl	0.621	0.954	0.462	1.8e-25
UNIPROTKB|Q83DV9	99	CBU_0583 "Glutaredoxin" [Coxie	0.585	1.0	0.494	4.6e-25
TIGR_CMR|CBU_0583	99	CBU_0583 "glutaredoxin-related	0.585	1.0	0.494	4.6e-25
UNIPROTKB|Q5ZK23	162	GLRX5 "Uncharacterized protein	0.639	0.666	0.468	5.9e-25
CGD|CAL0004286	175	orf19.2782 [Candida albicans (	0.579	0.56	0.514	1.6e-24
RGD|1308383	152	Glrx5 "glutaredoxin 5" [Rattus	0.633	0.703	0.481	2e-24
UNIPROTKB|Q86SX6	157	GLRX5 "Glutaredoxin-related pr	0.662	0.713	0.457	2.6e-24
UNIPROTKB|Q2GHG0	110	ECH_0302 "Glutaredoxin" [Ehrli	0.573	0.881	0.494	2.6e-24
TIGR_CMR|ECH_0302	110	ECH_0302 "glutaredoxin-related	0.573	0.881	0.494	2.6e-24

TAIR|locus:2093297 GRX4 "glutaredoxin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
 Identities = 117/168 (69%), Positives = 141/168 (83%)

Query:     1 MARSLSNLIFKGIASYPSARSSRIVSGSLYHNGM-KYSTDVPNDPDTHEDFRPTSKVDAS 59
             MA SLS+ + KGIA+  + RSSR+ S S+Y NGM ++S+ VP+D DTH+DF+PT KV   
Sbjct:     1 MAASLSSRLIKGIANLKAVRSSRLTSASVYQNGMMRFSSTVPSDSDTHDDFKPTQKVPPD 60

Query:    60 GL-SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118
                SLK++VE DVK+NPVM+YMKGVPE PQCGFSSLAVRVL  YNVPIS+RNILED ELK
Sbjct:    61 STDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQELK 120

Query:   119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
             +AVK+FSHWPTFPQIFIKGEFIGGSDIILNMH+ GEL++KLK ++ NQ
Sbjct:   121 NAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLKDVSGNQ 168

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0048653 "anther development" evidence=RCA

UNIPROTKB|Q606E0 MCA2078 "Glutaredoxin" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 49/106 (46%), Positives = 77/106 (72%)

Query:    65 EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
             E +++ + +NPV+LYMKG P+FPQCGFS  AV++L    V  +  N+ E PE++  +K  
Sbjct:     5 ENIKRQIADNPVILYMKGTPDFPQCGFSGRAVQILDKCGVEYAFVNVFEAPEVRENLKLV 64

Query:   125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA-SNQKSD 169
             SHWPTFPQ+F++GE +GGSDI++ +++SGEL++ L G   + ++ D
Sbjct:    65 SHWPTFPQLFVRGELVGGSDIMMELYESGELQKLLAGATKAGERQD 110

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83DV9 CBU_0583 "Glutaredoxin" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/99 (49%), Positives = 71/99 (71%)

Query:    61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA 120
             + + E ++Q V  NPV+LYMKG P+FPQCGFS   V++L    +  ++ N+LE PEL+  
Sbjct:     1 MRVHEEIQQQVTSNPVVLYMKGTPDFPQCGFSGRVVQILRQCKIDFTSFNVLESPELRQG 60

Query:   121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
             +K FS WPT PQ++IKGEFIGG DI+  + ++G+L+E L
Sbjct:    61 IKEFSSWPTIPQLYIKGEFIGGCDIVGELFETGKLQELL 99

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0583 CBU_0583 "glutaredoxin-related protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 49/99 (49%), Positives = 71/99 (71%)

Query:    61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA 120
             + + E ++Q V  NPV+LYMKG P+FPQCGFS   V++L    +  ++ N+LE PEL+  
Sbjct:     1 MRVHEEIQQQVTSNPVVLYMKGTPDFPQCGFSGRVVQILRQCKIDFTSFNVLESPELRQG 60

Query:   121 VKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
             +K FS WPT PQ++IKGEFIGG DI+  + ++G+L+E L
Sbjct:    61 IKEFSSWPTIPQLYIKGEFIGGCDIVGELFETGKLQELL 99

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5ZK23 GLRX5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 52/111 (46%), Positives = 79/111 (71%)

Query:    57 DASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-ISARNILEDP 115
             D  G   +E VE+ V+E+PV+++MKG P  P CGFS+  V++L  + V    A ++L+DP
Sbjct:    40 DGGGSGSREAVERLVREHPVVVFMKGSPAQPLCGFSNAVVQILRLHGVEDYRAHDVLQDP 99

Query:   116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK--GIAS 164
             +L+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK  GI S
Sbjct:   100 DLRQGIKNYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIRS 150

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

CGD|CAL0004286 orf19.2782 [Candida albicans (taxid:5476)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 52/101 (51%), Positives = 73/101 (72%)

Query:    63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-P--ISARNILEDPELKS 119
             LK+ +++ V  +PV+L+MKG PEFPQCGFS   +++LG   V P   +A N+LED EL+ 
Sbjct:    43 LKDALDKAVTTSPVVLFMKGTPEFPQCGFSRATIQILGQQGVDPEKFAAYNVLEDSELRE 102

Query:   120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
              +K +S WPT PQ+++ GEFIGG DII +M Q+GEL E L+
Sbjct:   103 GIKEYSSWPTIPQLYVNGEFIGGCDIITSMAQNGELAELLE 143

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

RGD|1308383 Glrx5 "glutaredoxin 5" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 53/110 (48%), Positives = 79/110 (71%)

Query:    58 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPE 116
             AS     E ++  VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+LEDPE
Sbjct:    32 ASSGGQAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLEDPE 91

Query:   117 LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK--GIAS 164
             L+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK  GI S
Sbjct:    92 LRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIRS 141

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|Q86SX6 GLRX5 "Glutaredoxin-related protein 5, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 54/118 (45%), Positives = 83/118 (70%)

Query:    58 ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPE 116
             A G    E ++  VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPE
Sbjct:    36 AGGGGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPE 95

Query:   117 LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK--GIAS---NQKSD 169
             L+  +K +S+WPT PQ+++ GEF+GG DI+L MHQ+G+L E+LK  GI S   ++K D
Sbjct:    96 LRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLGIHSALLDEKKD 153

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0030097 "hemopoiesis" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q2GHG0 ECH_0302 "Glutaredoxin" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 48/97 (49%), Positives = 71/97 (73%)

Query:    63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK 122
             + + ++ D++ N V+LYMKG  +FPQCGFSS+ V +L   NV   + N+LE  EL+ A+K
Sbjct:     5 IMDKIKHDIENNDVVLYMKGDADFPQCGFSSVVVSILKKMNVKFKSINVLESLELREAIK 64

Query:   123 AFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
              F++WPT PQ+++KGEFIGG DI+  M+ +GEL+E L
Sbjct:    65 EFTNWPTIPQLYVKGEFIGGCDIVKEMYHNGELQELL 101

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0302 ECH_0302 "glutaredoxin-related protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 48/97 (49%), Positives = 71/97 (73%)

Query:    63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK 122
             + + ++ D++ N V+LYMKG  +FPQCGFSS+ V +L   NV   + N+LE  EL+ A+K
Sbjct:     5 IMDKIKHDIENNDVVLYMKGDADFPQCGFSSVVVSILKKMNVKFKSINVLESLELREAIK 64

Query:   123 AFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
              F++WPT PQ+++KGEFIGG DI+  M+ +GEL+E L
Sbjct:    65 EFTNWPTIPQLYVKGEFIGGCDIVKEMYHNGELQELL 101

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBK6	GRS15_ARATH	No assigned EC number	0.7023	0.9822	0.9822	yes	no
Q0JM76	GRXS4_ORYSJ	No assigned EC number	0.4945	0.9881	0.9027	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034560001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (170 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020703001	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_21, whole genome shot [...] (114 aa)			•				•		0.470
	GSVIVG00034899001	SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (93 aa)	•				•				0.458

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	2e-52
TIGR00365	97	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4	3e-52
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	2e-46
PRK10824	115	PRK10824, PRK10824, glutaredoxin-4; Provisional	4e-34
PTZ00062	204	PTZ00062, PTZ00062, glutaredoxin; Provisional	1e-27
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	6e-27
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	2e-20
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	6e-11
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	3e-10
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	2e-07
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	3e-07
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	2e-06
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	2e-04
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	6e-04
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	9e-04

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score =  161 bits (410), Expect = 2e-52
 Identities = 44/90 (48%), Positives = 66/90 (73%)

Query: 67  VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH 126
           +++ +KENPV+L+MKG PE P+CGFS   V++L    V     +ILED E++  +K +S+
Sbjct: 1   IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN 60

Query: 127 WPTFPQIFIKGEFIGGSDIILNMHQSGELK 156
           WPTFPQ+++ GE +GG DI+  MH+SGEL+
Sbjct: 61  WPTFPQLYVNGELVGGCDIVKEMHESGELQ 90

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family

 Score =  161 bits (410), Expect = 3e-52
 Identities = 53/96 (55%), Positives = 76/96 (79%)

Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA 123
            E +++ + ENPV+LYMKG P+FPQCGFS+ AV++L A  VP +  N+LEDPE++  +K 
Sbjct: 2   IERIKEQIAENPVVLYMKGTPQFPQCGFSARAVQILNACGVPFAYVNVLEDPEIRQGIKE 61

Query: 124 FSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
           +S+WPT PQ+++KGEF+GG DII+ M+QSGEL+  L
Sbjct: 62  YSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation [Energy metabolism, Electron transport]. Length = 97

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score =  147 bits (372), Expect = 2e-46
 Identities = 50/100 (50%), Positives = 76/100 (76%), Gaps = 1/100 (1%)

Query: 65  EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-VPISARNILEDPELKSAVKA 123
           + +++ +KENPV+L+MKG PEFPQCGFS+ AV++L A   V  +  ++L+DPE++  +K 
Sbjct: 6   DRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKE 65

Query: 124 FSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
           +S+WPTFPQ+++ GEF+GG DI+  M+QSGEL+  LK   
Sbjct: 66  YSNWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLKEAG 105

Length = 105

>gnl|CDD|182759 PRK10824, PRK10824, glutaredoxin-4; Provisional

 Score =  115 bits (290), Expect = 4e-34
 Identities = 43/105 (40%), Positives = 76/105 (72%)

Query: 65  EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
           E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A     +  +IL++P++++ +  +
Sbjct: 6   EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKY 65

Query: 125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
           ++WPTFPQ+++ GE +GG DI++ M+Q GEL++ +K  A+  KS+
Sbjct: 66  ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 110

Length = 115

>gnl|CDD|240250 PTZ00062, PTZ00062, glutaredoxin; Provisional

 Score =  102 bits (255), Expect = 1e-27
 Identities = 38/99 (38%), Positives = 63/99 (63%)

Query: 59  SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELK 118
           S     E +E+ ++ + ++L+MKG   FP C FS+  V +L +  V     NI EDP+L+
Sbjct: 98  SSEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLR 157

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKE 157
             +K +S+WPT+PQ+++ GE IGG DII  +++S  L++
Sbjct: 158 EELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSLRK 196

Length = 204

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 96.4 bits (241), Expect = 6e-27
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 5/77 (6%)

Query: 75  PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134
            V+++ K       C +   A R+L +  +     +ILED EL+  +K  S WPT PQIF
Sbjct: 1   KVVVFSKST-----CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIF 55

Query: 135 IKGEFIGGSDIILNMHQ 151
           I GEFIGG D +  +H+
Sbjct: 56  INGEFIGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 79.1 bits (196), Expect = 2e-20
 Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           V+L+ K     P C F   A R+L +  V     ++ EDPE++  +K  S WPT PQ+FI
Sbjct: 1   VVLFTK-----PTCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSGWPTVPQVFI 55

Query: 136 KGEFI 140
            GE I
Sbjct: 56  DGEHI 60

Length = 60

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 56.9 bits (138), Expect = 6e-11
 Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 5/77 (6%)

Query: 95  AVR-VLGAYNVPISARNILED----PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM 149
            VR +L ++ V    R++  D     EL+  + A     + P++F+ G ++GG++ +L +
Sbjct: 21  NVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80

Query: 150 HQSGELKEKLKGIASNQ 166
           ++SGEL++ LKGI +  
Sbjct: 81  NESGELRKLLKGIRARA 97

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 3/73 (4%)

Query: 89  CGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSHWPTFPQIFIKGEFIGGSDI 145
           C +   A  +L    V  +   + +     E++  ++  +   T P +FI G+FIGG D 
Sbjct: 10  CPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDD 69

Query: 146 ILNMHQSGELKEK 158
           ++ +H+SG+L + 
Sbjct: 70  LMALHKSGKLVKL 82

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 46.1 bits (110), Expect = 2e-07
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 12/90 (13%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE------DPELKSAVKAFSHWPT 129
           V+++ K       C +   A  +L   NV  +   ++E        E++  ++  +   T
Sbjct: 1   VVVFSK-----SYCPYCKKAKEILAKLNVKPAY-EVVELDQLSNGSEIQDYLEEITGQRT 54

Query: 130 FPQIFIKGEFIGGSDIILNMHQSGELKEKL 159
            P IFI G+FIGG   +L +++SG+L E L
Sbjct: 55  VPNIFINGKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 45.3 bits (108), Expect = 3e-07
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 75  PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH-WPTFPQI 133
            V +Y K       C +   A  +L    V     ++  DP L+  +   S    T PQI
Sbjct: 1   KVEIYTKPN-----CPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI 55

Query: 134 FIKGEFIGGSD 144
           FI    IGG D
Sbjct: 56  FIGDVHIGGCD 66

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 5/80 (6%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           V +Y K     P C + + A  +L +  V  +   +  DP L+  +   S   T PQIFI
Sbjct: 1   VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55

Query: 136 KGEFIGGSDIILNMHQSGEL 155
               +GG D +  + + G+L
Sbjct: 56  GDVHVGGCDDLYALDREGKL 75

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 71  VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW--- 127
           V E  V+++ +       C    +  R+L    V  +   I ++P  K    A S     
Sbjct: 5   VSEKAVVIFSRS-----SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS 59

Query: 128 PTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           P  P +F+ G+ +GG + ++ +H SG L   LK
Sbjct: 60  PAVPAVFVGGKLVGGLENVMALHISGSLVPMLK 92

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 86  FPQCGFSSLAVRVLGAYNVPISARNILEDP--ELKSAVKAFSHWPTFPQIFIKGEFIGGS 143
            P C +   A R+L    V     ++ +D   E +  VK      T PQIFI G+ +GG 
Sbjct: 8   KPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGC 67

Query: 144 DIILNMHQSGEL 155
           D +  +   G+L
Sbjct: 68  DDLDALEAKGKL 79

Length = 80

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 22/72 (30%), Positives = 29/72 (40%)

Query: 89  CGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN 148
           C F   A  +L +  V      I  D   +  +   S   T PQIFI  + IGG D +  
Sbjct: 12  CPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYA 71

Query: 149 MHQSGELKEKLK 160
           +   G L   LK
Sbjct: 72  LDARGGLDPLLK 83

Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	100.0
PRK10824	115	glutaredoxin-4; Provisional	100.0
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.97
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.97
PTZ00062	204	glutaredoxin; Provisional	99.97
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.96
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.96
PHA03050	108	glutaredoxin; Provisional	99.96
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	99.93
PRK10638	83	glutaredoxin 3; Provisional	99.91
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	99.9
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.9
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.87
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.86
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.86
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.85
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.85
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.84
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.84
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.82
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.82
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.8
PRK11200	85	grxA glutaredoxin 1; Provisional	99.8
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.78
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.74
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.74
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.7
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.65
PRK10329	81	glutaredoxin-like protein; Provisional	99.63
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	99.61
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.5
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.42
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.38
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.28
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	99.12
PRK10824	115	glutaredoxin-4; Provisional	99.08
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.98
PTZ00062	204	glutaredoxin; Provisional	98.94
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.87
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.84
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.81
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	98.64
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.64
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.59
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.55
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.55
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.54
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.53
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	98.51
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.5
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.46
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.46
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.43
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.43
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.42
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.34
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.32
KOG4023	108	consensus Uncharacterized conserved protein [Funct	98.31
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.3
PRK12559	131	transcriptional regulator Spx; Provisional	98.21
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.14
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.14
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	98.11
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.1
PHA02125	75	thioredoxin-like protein	98.1
KOG3029	370	consensus Glutathione S-transferase-related protei	98.09
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	98.07
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	98.06
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	98.04
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	98.01
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	97.97
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	97.96
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.9
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.86
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.85
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.84
PHA02278	103	thioredoxin-like protein	97.82
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.82
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.8
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.79
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	97.72
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.71
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.71
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	97.69
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.65
PRK10387	210	glutaredoxin 2; Provisional	97.63
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.62
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.61
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.56
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	97.55
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.55
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.55
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	97.52
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	97.52
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	97.51
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	97.49
PRK10026	141	arsenate reductase; Provisional	97.48
PRK10853	118	putative reductase; Provisional	97.47
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	97.46
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	97.46
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.43
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	97.39
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.37
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	97.34
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	97.33
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	97.32
PTZ00051	98	thioredoxin; Provisional	97.3
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.28
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	97.26
PRK09481	211	sspA stringent starvation protein A; Provisional	97.24
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	97.23
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	97.19
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	97.15
PRK09381	109	trxA thioredoxin; Provisional	97.13
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	97.11
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	97.1
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	97.08
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.07
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	97.05
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	97.01
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	96.95
PRK10996	139	thioredoxin 2; Provisional	96.95
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	96.95
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	96.92
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.88
PLN02817	265	glutathione dehydrogenase (ascorbate)	96.87
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.86
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	96.83
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	96.83
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.77
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	96.76
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	96.76
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	96.74
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	96.74
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	96.72
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	96.64
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	96.63
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	96.6
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	96.6
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	96.59
PRK15113	214	glutathione S-transferase; Provisional	96.56
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	96.54
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	96.52
PLN02378	213	glutathione S-transferase DHAR1	96.52
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	96.48
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	96.44
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	96.42
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	96.38
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	96.37
PLN02473	214	glutathione S-transferase	96.37
KOG4244	281	consensus Failed axon connections (fax) protein/gl	96.28
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	96.27
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	96.23
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	96.21
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	96.19
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	96.05
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	96.03
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	95.99
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	95.97
PF13728	215	TraF: F plasmid transfer operon protein	95.87
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	95.79
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	95.75
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	95.71
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	95.67
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	95.64
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	95.62
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	95.62
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	95.59
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	95.47
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.46
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	95.34
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	95.27
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	95.23
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	95.19
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	95.16
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	95.14
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	95.13
COG1393	117	ArsC Arsenate reductase and related proteins, glut	95.12
PRK13728	181	conjugal transfer protein TrbB; Provisional	95.12
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	95.11
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	95.07
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	95.05
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	95.0
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	94.86
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	94.78
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	94.59
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	94.58
COG3019	149	Predicted metal-binding protein [General function	94.49
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	94.41
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	94.41
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	94.37
PRK12559	131	transcriptional regulator Spx; Provisional	94.35
PRK10357	202	putative glutathione S-transferase; Provisional	94.35
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	94.26
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	94.23
PLN02395	215	glutathione S-transferase	94.22
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	94.19
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	94.16
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	94.15
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	94.14
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	94.09
PRK10026	141	arsenate reductase; Provisional	94.08
PRK10853	118	putative reductase; Provisional	94.06
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	94.06
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	94.03
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	94.02
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	93.94
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	93.89
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	93.86
PTZ00102	477	disulphide isomerase; Provisional	93.46
PLN02309	457	5'-adenylylsulfate reductase	93.34
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	93.26
PRK10638	83	glutaredoxin 3; Provisional	93.19
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	92.99
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	92.86
PRK11752	264	putative S-transferase; Provisional	92.71
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	92.71
smart00594	122	UAS UAS domain.	92.44
KOG3425	128	consensus Uncharacterized conserved protein [Funct	92.37
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	92.33
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	92.28
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	92.13
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	92.11
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	92.03
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	91.69
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	91.69
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	91.62
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	91.51
PTZ00057	205	glutathione s-transferase; Provisional	91.48
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	91.42
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	90.95
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	90.56
PTZ00102	477	disulphide isomerase; Provisional	90.24
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	90.0
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	89.93
PRK10542	201	glutathionine S-transferase; Provisional	89.45
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	89.41
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	89.38
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	89.14
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	88.81
KOG0867	226	consensus Glutathione S-transferase [Posttranslati	88.78
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	88.62
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	88.49
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	88.24
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	88.2
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	88.03
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	87.92
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	87.91
KOG4277	468	consensus Uncharacterized conserved protein, conta	87.85
KOG1695	206	consensus Glutathione S-transferase [Posttranslati	87.75
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	87.73
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	87.63
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	87.54
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	87.44
PRK10329	81	glutaredoxin-like protein; Provisional	87.13
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	86.79
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	86.78
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	86.72
COG2143	182	Thioredoxin-related protein [Posttranslational mod	86.69
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	86.54
PHA03050	108	glutaredoxin; Provisional	85.78
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	85.16
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	84.45
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	84.04
COG4837	106	Uncharacterized protein conserved in bacteria [Fun	84.03
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	83.6
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	83.55
PHA03075	123	glutaredoxin-like protein; Provisional	83.32
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	81.54
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	81.35
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	80.92
PF10568	72	Tom37: Outer mitochondrial membrane transport comp	80.9
PF04134	114	DUF393: Protein of unknown function, DUF393; Inter	80.84
PRK11200	85	grxA glutaredoxin 1; Provisional	80.01

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-36  Score=209.06  Aligned_cols=101  Identities=50%  Similarity=0.994  Sum_probs=98.2

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCC-CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-VPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      ...++|++.++.|+|+|||||||+.|.|+|+.++.++|..+| ++|..+||+.|+++|+.|+++++|||+||+||||+||
T Consensus         3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEfv   82 (105)
T COG0278           3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEFV   82 (105)
T ss_pred             hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEEe
Confidence            467899999999999999999999999999999999999999 8999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHhcccHHHHHhcc
Q 030914          141 GGSDIILNMHQSGELKEKLKGI  162 (169)
Q Consensus       141 GG~d~l~~~~~~g~L~~~L~~~  162 (169)
                      ||+|++.+|+++|+|+++|+.+
T Consensus        83 GG~DIv~Em~q~GELq~~l~~~  104 (105)
T COG0278          83 GGCDIVREMYQSGELQTLLKEA  104 (105)
T ss_pred             ccHHHHHHHHHcchHHHHHHhc
Confidence            9999999999999999999865

>PRK10824 glutaredoxin-4; Provisional

Probab=100.00  E-value=1.4e-35  Score=213.10  Aligned_cols=107  Identities=40%  Similarity=0.865  Sum_probs=102.0

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG  141 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG  141 (169)
                      +..++|++++++++||||+||||+.|+||||.+|+++|+++|++|.++||+.+++++++|++++||+|+|||||||+|||
T Consensus         3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG   82 (115)
T PRK10824          3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG   82 (115)
T ss_pred             hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHhcccHHHHHhcccccCCC
Q 030914          142 GSDIILNMHQSGELKEKLKGIASNQKS  168 (169)
Q Consensus       142 G~d~l~~~~~~g~L~~~L~~~~~~~~~  168 (169)
                      |+|++.+|+++|+|+++|+.+++...+
T Consensus        83 G~ddl~~l~~~G~L~~lL~~~~~~~~~  109 (115)
T PRK10824         83 GCDIVIEMYQRGELQQLIKETAAKYKS  109 (115)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHhhhcc
Confidence            999999999999999999988775543

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.97  E-value=2.3e-31  Score=186.32  Aligned_cols=96  Identities=56%  Similarity=1.081  Sum_probs=92.9

Q ss_pred             HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeecc
Q 030914           64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS  143 (169)
Q Consensus        64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~  143 (169)
                      .+++++++++++|+||++|+++.|+||||.+|+++|+++||+|+++||..+++.++++++++|++|+|||||||++|||+
T Consensus         2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~   81 (97)
T TIGR00365         2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGC   81 (97)
T ss_pred             hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCh
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccHHHHH
Q 030914          144 DIILNMHQSGELKEKL  159 (169)
Q Consensus       144 d~l~~~~~~g~L~~~L  159 (169)
                      |++.+|+++|+|.++|
T Consensus        82 ddl~~l~~~g~L~~~l   97 (97)
T TIGR00365        82 DIIMEMYQSGELQTLL   97 (97)
T ss_pred             HHHHHHHHCcChHHhC
Confidence            9999999999999875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.4e-30  Score=203.40  Aligned_cols=100  Identities=51%  Similarity=0.894  Sum_probs=97.3

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG  142 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG  142 (169)
                      .+++++++++.++|+|||||+|+.|.|+|+++++.+|++++|+|..+||..|+++|+.+|++|.|||+|||||||+||||
T Consensus       128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG  207 (227)
T KOG0911|consen  128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG  207 (227)
T ss_pred             HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence            66799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhcccHHHHHhcc
Q 030914          143 SDIILNMHQSGELKEKLKGI  162 (169)
Q Consensus       143 ~d~l~~~~~~g~L~~~L~~~  162 (169)
                      +|++.+|+++|+|+..|+++
T Consensus       208 lDIl~~m~~~geL~~~l~~~  227 (227)
T KOG0911|consen  208 LDILKEMHEKGELVYTLKEA  227 (227)
T ss_pred             cHHHHHHhhcccHHHHhhcC
Confidence            99999999999999999864

>PTZ00062 glutaredoxin; Provisional

Probab=99.97  E-value=7.9e-30  Score=199.99  Aligned_cols=101  Identities=37%  Similarity=0.766  Sum_probs=97.5

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      +++.+++++++++++|+||+||+|+.|+||||++++++|++++|+|.++||+.++++|++|++++||+|+|||||||++|
T Consensus       100 ~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~I  179 (204)
T PTZ00062        100 EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGELI  179 (204)
T ss_pred             HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEEE
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHhcccHHHHHhc
Q 030914          141 GGSDIILNMHQSGELKEKLKG  161 (169)
Q Consensus       141 GG~d~l~~~~~~g~L~~~L~~  161 (169)
                      ||+|++++|+++|+|+++|..
T Consensus       180 GG~d~l~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        180 GGHDIIKELYESNSLRKVIPD  200 (204)
T ss_pred             cChHHHHHHHHcCChhhhhhh
Confidence            999999999999999999864

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.96  E-value=1.3e-29  Score=174.97  Aligned_cols=90  Identities=49%  Similarity=0.998  Sum_probs=87.0

Q ss_pred             HHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHH
Q 030914           67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII  146 (169)
Q Consensus        67 i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l  146 (169)
                      |++++++++|+||++|+|+.|+||||.+++++|+++|++|+++||..++++++++++.+|+.|+|+|||||++|||+|++
T Consensus         1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l   80 (90)
T cd03028           1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV   80 (90)
T ss_pred             ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccHH
Q 030914          147 LNMHQSGELK  156 (169)
Q Consensus       147 ~~~~~~g~L~  156 (169)
                      ++++++|+|+
T Consensus        81 ~~l~~~g~L~   90 (90)
T cd03028          81 KEMHESGELQ   90 (90)
T ss_pred             HHHHHcCCcC
Confidence            9999999985

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.96  E-value=6.4e-29  Score=174.56  Aligned_cols=93  Identities=24%  Similarity=0.497  Sum_probs=86.2

Q ss_pred             HHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH---HHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           68 EQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE---LKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        68 ~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~---~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      ++++++++|+||++     ++||||.+++++|+++|++|+++||+.+++   .++++.+++|++|+|+|||||++|||+|
T Consensus         2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d   76 (99)
T TIGR02189         2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE   76 (99)
T ss_pred             hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence            56789999999999     799999999999999999999999998754   6678888899999999999999999999


Q ss_pred             HHHHHHhcccHHHHHhccccc
Q 030914          145 IILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       145 ~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ++.+|+++|+|+++|+.+++.
T Consensus        77 dl~~l~~~G~L~~~l~~~~~~   97 (99)
T TIGR02189        77 NVMALHISGSLVPMLKQAGAL   97 (99)
T ss_pred             HHHHHHHcCCHHHHHHHhCcc
Confidence            999999999999999988753

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PHA03050 glutaredoxin; Provisional

Probab=99.96  E-value=2.1e-28  Score=174.43  Aligned_cols=97  Identities=26%  Similarity=0.420  Sum_probs=92.0

Q ss_pred             HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCC---CeEEEEcCC---CHHHHHHHHHhcCCCCCcEEEeCC
Q 030914           64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILE---DPELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v---~~~~~di~~---~~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      ++++++++++++|+||++     ++||||.+|+++|+++++   +|+.+||+.   +.++++++++.+|+.|+|+|||||
T Consensus         3 ~~~v~~~i~~~~V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g   77 (108)
T PHA03050          3 EEFVQQRLANNKVTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK   77 (108)
T ss_pred             HHHHHHHhccCCEEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence            578999999999999999     789999999999999999   799999986   678999999999999999999999


Q ss_pred             eEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          138 EFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       138 ~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ++|||+|++++|+++|+|.++|+.+++.
T Consensus        78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~~  105 (108)
T PHA03050         78 TSIGGYSDLLEIDNMDALGDILSSIGVL  105 (108)
T ss_pred             EEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence            9999999999999999999999998864

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.6e-25  Score=155.73  Aligned_cols=98  Identities=32%  Similarity=0.544  Sum_probs=90.7

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCeE
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFIKGEF  139 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~~  139 (169)
                      ..+++++++.+++||||+|     .+||+|.+++.+|...++++..++++.+   .+++++|.+.+|.+|+|+|||+|+|
T Consensus         3 ~~~~v~~~i~~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~   77 (104)
T KOG1752|consen    3 AEAKVRKMISENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF   77 (104)
T ss_pred             HHHHHHHHhhcCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence            4567999999999999999     4899999999999999999999988863   5899999999999999999999999


Q ss_pred             eeccHHHHHHHhcccHHHHHhccccc
Q 030914          140 IGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       140 iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      |||+++++++|.+|+|.++|+.+++.
T Consensus        78 iGG~~dl~~lh~~G~L~~~l~~~~~~  103 (104)
T KOG1752|consen   78 IGGASDLMALHKSGELVPLLKEAGAL  103 (104)
T ss_pred             EcCHHHHHHHHHcCCHHHHHHHhhcc
Confidence            99999999999999999999988753

>PRK10638 glutaredoxin 3; Provisional

Probab=99.91  E-value=1.2e-23  Score=142.77  Aligned_cols=82  Identities=30%  Similarity=0.427  Sum_probs=78.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhcc
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSG  153 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g  153 (169)
                      .+|+||++     ++||||.+|+.+|+++|++|+.+||+.+++.++++.+.+|..++|+||+||++|||+|++++++.+|
T Consensus         2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g   76 (83)
T PRK10638          2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG   76 (83)
T ss_pred             CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence            47999999     7899999999999999999999999999989999999999999999999999999999999999999


Q ss_pred             cHHHHHh
Q 030914          154 ELKEKLK  160 (169)
Q Consensus       154 ~L~~~L~  160 (169)
                      +|.++|+
T Consensus        77 ~l~~~~~   83 (83)
T PRK10638         77 GLDPLLK   83 (83)
T ss_pred             CHHHHhC
Confidence            9999885

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=99.90  E-value=2e-23  Score=156.15  Aligned_cols=90  Identities=23%  Similarity=0.502  Sum_probs=82.5

Q ss_pred             CeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC----CCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW----PTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~----~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +|+||+++.. .+.+||+|.+|+++|++++|+|+++||+++++.+++|++++|+    .|+|||||+|++|||+|++++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            5899999644 3557999999999999999999999999999999999998775    9999999999999999999999


Q ss_pred             HhcccHHHHHhcccc
Q 030914          150 HQSGELKEKLKGIAS  164 (169)
Q Consensus       150 ~~~g~L~~~L~~~~~  164 (169)
                      +++|+|.++|+++..
T Consensus        81 ~e~G~L~~lL~~~~~   95 (147)
T cd03031          81 NESGELRKLLKGIRA   95 (147)
T ss_pred             HHcCCHHHHHhhccc
Confidence            999999999998743

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.90  E-value=1.7e-23  Score=140.45  Aligned_cols=79  Identities=30%  Similarity=0.516  Sum_probs=76.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhcccH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL  155 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g~L  155 (169)
                      |+||++     ++||+|.+|+++|+++|++|+.+||+.+++.++++.+.+|+.++|+|||||++|||++++.+++++|+|
T Consensus         1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l   75 (79)
T TIGR02181         1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL   75 (79)
T ss_pred             CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence            679998     799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 030914          156 KEKL  159 (169)
Q Consensus       156 ~~~L  159 (169)
                      +++|
T Consensus        76 ~~~l   79 (79)
T TIGR02181        76 DPLL   79 (79)
T ss_pred             hhhC
Confidence            9875

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.87  E-value=1.4e-21  Score=129.35  Aligned_cols=74  Identities=31%  Similarity=0.481  Sum_probs=70.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC-CCcEEEeCCeEeeccHHHHHHHhcc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP-TFPQIFIKGEFIGGSDIILNMHQSG  153 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~-t~P~vfi~g~~iGG~d~l~~~~~~g  153 (169)
                      +|+||++     ++||+|.+|+++|++++++|+++||+.+++.++++.+.+|+. ++|+|||||++|||++++++++++|
T Consensus         1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418           1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            4889999     789999999999999999999999999999999999888888 9999999999999999999999987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.86  E-value=1.6e-21  Score=129.15  Aligned_cols=72  Identities=22%  Similarity=0.321  Sum_probs=68.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~  151 (169)
                      +|+||++     ++||+|++|+++|+++||+|+.+||..+++.++++++++|+.++|+||+||++|||+|++.+|++
T Consensus         2 ~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027           2 RVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             EEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence            6899999     78999999999999999999999999999999999999999999999999999999999999863

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=7.7e-23  Score=141.20  Aligned_cols=76  Identities=21%  Similarity=0.325  Sum_probs=64.9

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCC-CCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNG-MKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGV   83 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g-~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~   83 (169)
                      ++|||||||.+|+||||++++++|..+| ++|.+ |||.|+++|+++|++++|||.++                +|.+| 
T Consensus        17 VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQ----------------Lyi~G-   79 (105)
T COG0278          17 VVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQ----------------LYVNG-   79 (105)
T ss_pred             eEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCce----------------eeECC-
Confidence            6899999999999999999999999999 79998 99999999999999999999752                46665 


Q ss_pred             CCCCCCccHHHHHHHHhc
Q 030914           84 PEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        84 ~~~~~C~~c~~a~~~L~~  101 (169)
                         +.-+-|.-+++++++
T Consensus        80 ---EfvGG~DIv~Em~q~   94 (105)
T COG0278          80 ---EFVGGCDIVREMYQS   94 (105)
T ss_pred             ---EEeccHHHHHHHHHc
Confidence               345556666666544

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.4e-21  Score=130.35  Aligned_cols=76  Identities=33%  Similarity=0.516  Sum_probs=71.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH--HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP--ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQS  152 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~--~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~  152 (169)
                      .|+||++     ++||||.+|+++|++.|++|+++++..++  +.++.+++.+|.+|+|||||||++|||++++.++...
T Consensus         2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~   76 (80)
T COG0695           2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK   76 (80)
T ss_pred             CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence            6899999     78999999999999999999999999888  7778888888999999999999999999999999988


Q ss_pred             ccH
Q 030914          153 GEL  155 (169)
Q Consensus       153 g~L  155 (169)
                      |.|
T Consensus        77 ~~l   79 (80)
T COG0695          77 GKL   79 (80)
T ss_pred             ccC
Confidence            876

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.85  E-value=7.1e-21  Score=128.09  Aligned_cols=79  Identities=30%  Similarity=0.531  Sum_probs=72.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCC--eEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVP--ISARNILED---PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~--~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      |++|++     ++||+|.+++.+|++++++  |+.++|+.+   .+.++++++.+|.+++|+||+||++|||++++.+++
T Consensus         1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~   75 (84)
T TIGR02180         1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY   75 (84)
T ss_pred             CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence            688998     7999999999999999999  888888763   567788999999999999999999999999999999


Q ss_pred             hcccHHHHH
Q 030914          151 QSGELKEKL  159 (169)
Q Consensus       151 ~~g~L~~~L  159 (169)
                      ++|+|.++|
T Consensus        76 ~~g~l~~~~   84 (84)
T TIGR02180        76 KSGKLAELL   84 (84)
T ss_pred             HcCChhhhC
Confidence            999999875

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.84  E-value=9.1e-21  Score=127.28  Aligned_cols=78  Identities=28%  Similarity=0.574  Sum_probs=72.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~  151 (169)
                      +|++|++     ++||+|.+++++|++.+++|+.++++.+   .++++++++++|++++|+||++|++|||++++.++.+
T Consensus         1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~   75 (82)
T cd03419           1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK   75 (82)
T ss_pred             CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence            5899998     7999999999999999999998888765   5578889999999999999999999999999999999


Q ss_pred             cccHHH
Q 030914          152 SGELKE  157 (169)
Q Consensus       152 ~g~L~~  157 (169)
                      +|+|++
T Consensus        76 ~g~l~~   81 (82)
T cd03419          76 SGKLVK   81 (82)
T ss_pred             cCCccC
Confidence            999975

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.84  E-value=1.1e-20  Score=130.96  Aligned_cols=85  Identities=19%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             eEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC----CCCcEEEeCCeEeeccHHHHHHH
Q 030914           76 VMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW----PTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        76 Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~----~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      |+||+.+.. .+..=..|.+++.+|+.++|+|+++||+.+++.++++.+.+|.    +|+|||||||+||||+|++.+++
T Consensus         2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l~   81 (92)
T cd03030           2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEAK   81 (92)
T ss_pred             EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence            678887654 2333357999999999999999999999999999999999864    99999999999999999999999


Q ss_pred             hcccHHHHHh
Q 030914          151 QSGELKEKLK  160 (169)
Q Consensus       151 ~~g~L~~~L~  160 (169)
                      ++|+|.++|+
T Consensus        82 e~g~L~~lLk   91 (92)
T cd03030          82 ENNTLEEFLK   91 (92)
T ss_pred             hCCCHHHHhC
Confidence            9999999986

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.82  E-value=4.6e-20  Score=124.13  Aligned_cols=74  Identities=28%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      -++++|+||++     ++||+|.+++++|+++||+|+++||+.+++. +++++.+|+.++|+|||||++|||++++.+..
T Consensus         5 ~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l   78 (79)
T TIGR02190         5 RKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAYL   78 (79)
T ss_pred             CCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence            46789999999     7999999999999999999999999887664 45777899999999999999999999998753

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.82  E-value=6.1e-20  Score=121.14  Aligned_cols=70  Identities=31%  Similarity=0.484  Sum_probs=64.4

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      +|+||++     ++||+|.+|+++|+++|++|+.+||+.++. .++++..+|+.++|+|||||++|||++++.++.
T Consensus         2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            6899999     789999999999999999999999998874 567888899999999999999999999998874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.80  E-value=3.9e-19  Score=121.59  Aligned_cols=73  Identities=18%  Similarity=0.314  Sum_probs=65.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCC--CCCcEEEeCCeEeeccHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHW--PTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~--~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      |+||++     ++||+|.+|+++|++++     ++|+.+||..+...++++.+.+|+  .++|+|||||++|||+|++.+
T Consensus         2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~   76 (86)
T TIGR02183         2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ   76 (86)
T ss_pred             EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence            789999     79999999999999984     679999998776667778888887  899999999999999999999


Q ss_pred             HHhcc
Q 030914          149 MHQSG  153 (169)
Q Consensus       149 ~~~~g  153 (169)
                      +++++
T Consensus        77 ~~~~~   81 (86)
T TIGR02183        77 LVKEN   81 (86)
T ss_pred             HHHhc
Confidence            97764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.80  E-value=4.6e-19  Score=120.64  Aligned_cols=73  Identities=19%  Similarity=0.267  Sum_probs=66.7

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCC--CCCcEEEeCCeEeeccHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHW--PTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~--~t~P~vfi~g~~iGG~d~l~  147 (169)
                      +|+||++     ++||+|.+|+++|++     .+++|+.+||..++..++++.+.+|+  .++|||||||++|||++++.
T Consensus         2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~   76 (85)
T PRK11200          2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE   76 (85)
T ss_pred             EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence            6899999     789999999999999     89999999999887777888888876  89999999999999999999


Q ss_pred             HHHhc
Q 030914          148 NMHQS  152 (169)
Q Consensus       148 ~~~~~  152 (169)
                      ++.+.
T Consensus        77 ~~~~~   81 (85)
T PRK11200         77 AYVKE   81 (85)
T ss_pred             HHHHH
Confidence            98754

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.78  E-value=1.3e-18  Score=112.63  Aligned_cols=72  Identities=42%  Similarity=0.786  Sum_probs=68.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~  151 (169)
                      +|++|++     ++||+|++++.+|++++++|+++|+..+++.++++.+.+|+.++|++|+||++|||+++++++++
T Consensus         1 ~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066           1 KVVVFSK-----STCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CEEEEEC-----CCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence            5899999     78999999999999999999999999999999999999999999999999999999999998863

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.74  E-value=5.4e-18  Score=108.02  Aligned_cols=60  Identities=35%  Similarity=0.632  Sum_probs=58.0

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      |+||++     ++||+|.+++++|+++|++|+.+||+.+++.++++++.+|..++|+|||||++|
T Consensus         1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence            789999     799999999999999999999999999999999999999999999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.74  E-value=8.7e-18  Score=144.43  Aligned_cols=85  Identities=29%  Similarity=0.494  Sum_probs=74.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH--------hcCCCCCcEEEeCCeEeeccHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA--------FSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~--------~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      .+|+||++     ++||+|.+|+++|+++||+|+.+||+.++...+.+.+        .+|..|+|||||||++|||+|+
T Consensus         2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~   76 (410)
T PRK12759          2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN   76 (410)
T ss_pred             CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence            47999999     7899999999999999999999999988754443222        3689999999999999999999


Q ss_pred             HHHHHhcccHHHHHhccccc
Q 030914          146 ILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       146 l~~~~~~g~L~~~L~~~~~~  165 (169)
                      +.+  .+|+|.++|++.+.-
T Consensus        77 l~~--~~g~l~~~~~~~~~~   94 (410)
T PRK12759         77 LMA--RAGEVIARVKGSSLT   94 (410)
T ss_pred             HHH--HhCCHHHHhcCCccc
Confidence            987  899999999986653

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.7e-18  Score=134.59  Aligned_cols=77  Identities=23%  Similarity=0.279  Sum_probs=66.1

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVP   84 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~   84 (169)
                      +||||||+|++|+||||++++++|+.+|++|.+ |||.|+++|+.+|.+++|||.++                ||.+|  
T Consensus       141 v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQ----------------lyI~G--  202 (227)
T KOG0911|consen  141 VMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQ----------------LYVKG--  202 (227)
T ss_pred             EEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccc----------------eeECC--
Confidence            799999999999999999999999999999998 99999999999999999999752                57776  


Q ss_pred             CCCCCccHHHHHHHHhcC
Q 030914           85 EFPQCGFSSLAVRVLGAY  102 (169)
Q Consensus        85 ~~~~C~~c~~a~~~L~~~  102 (169)
                        +-=|-|.-+++++++-
T Consensus       203 --EFiGGlDIl~~m~~~g  218 (227)
T KOG0911|consen  203 --EFIGGLDILKEMHEKG  218 (227)
T ss_pred             --EeccCcHHHHHHhhcc
Confidence              3445566666666543

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.65  E-value=6.1e-16  Score=102.10  Aligned_cols=64  Identities=25%  Similarity=0.344  Sum_probs=58.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe-EeeccHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE-FIGGSDI  145 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~-~iGG~d~  145 (169)
                      |+||++     ++||+|++++++|+++|++|+.+||..+++.+++++.. |..++|+|+++|. +|||++.
T Consensus         1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccCH
Confidence            579999     78999999999999999999999999999999998864 8899999999775 9999863

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.63  E-value=1.9e-15  Score=102.34  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +|+||++     ++||+|.+++++|++.||+|+++||+.+++.+++++. .|..++|+|+++|..++|++
T Consensus         2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~   65 (81)
T PRK10329          2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_pred             EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence            6899999     7999999999999999999999999999999888877 58999999999999999986

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.7e-15  Score=121.86  Aligned_cols=91  Identities=23%  Similarity=0.511  Sum_probs=82.0

Q ss_pred             cCCeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC----CCCCcEEEeCCeEeeccHHHH
Q 030914           73 ENPVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH----WPTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        73 ~~~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g----~~t~P~vfi~g~~iGG~d~l~  147 (169)
                      .+.||+|+.+-. -+..--.|..++.+|++.+|.|+++||.+|...+++|+++.|    ..++|+|||+|+||||.++++
T Consensus       130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~  209 (281)
T KOG2824|consen  130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV  209 (281)
T ss_pred             CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence            468999998755 345556799999999999999999999999999999998865    478999999999999999999


Q ss_pred             HHHhcccHHHHHhccc
Q 030914          148 NMHQSGELKEKLKGIA  163 (169)
Q Consensus       148 ~~~~~g~L~~~L~~~~  163 (169)
                      +|++.|+|.++|+++.
T Consensus       210 ~LnE~GkL~~lL~~~p  225 (281)
T KOG2824|consen  210 RLNEEGKLGKLLKGIP  225 (281)
T ss_pred             hhhhcchHHHHHhcCC
Confidence            9999999999999876

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.50  E-value=8.6e-14  Score=97.46  Aligned_cols=86  Identities=23%  Similarity=0.319  Sum_probs=65.0

Q ss_pred             CeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC---------CCCCcEEEeCCeEeeccH
Q 030914           75 PVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH---------WPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        75 ~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g---------~~t~P~vfi~g~~iGG~d  144 (169)
                      .|.||..+.. +..-=..+.++..+|+.++|+|+.+||..+++.|+.+++..|         .+-.||||+||+|+|+++
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            4678876542 111124678999999999999999999999999999998773         345589999999999999


Q ss_pred             HHHHHHhcccHHHHHh
Q 030914          145 IILNMHQSGELKEKLK  160 (169)
Q Consensus       145 ~l~~~~~~g~L~~~L~  160 (169)
                      ++.++.+.|+|.+.|+
T Consensus        82 ~f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   82 DFEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHHCTT-HHHHHT
T ss_pred             HHHHHHhhCHHHHHhC
Confidence            9999999999999986

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.42  E-value=1.1e-12  Score=84.97  Aligned_cols=66  Identities=21%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      .|++|+.     ++||+|++++.+|++.+++|..+|++.+++.++++.+..|..++|.++++|+.++|++.
T Consensus         1 ~i~lf~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196         1 KVKVYTT-----PWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             CEEEEcC-----CCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCCH
Confidence            3789988     79999999999999999999999999998888888888899999999999999988753

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.38  E-value=3.3e-12  Score=82.66  Aligned_cols=66  Identities=26%  Similarity=0.515  Sum_probs=60.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      +|++|+.     ++||+|.+++.+|++.+++|..++++.++..++++.+.++..++|+|+++|+.|+|++.
T Consensus         1 ~v~l~~~-----~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTK-----PDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeC-----CCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            4789988     78999999999999999999999999888888889888888999999999999999874

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.28  E-value=2.5e-11  Score=79.78  Aligned_cols=64  Identities=20%  Similarity=0.342  Sum_probs=56.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEe-CCeEeecc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFI-KGEFIGGS  143 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi-~g~~iGG~  143 (169)
                      +|+||+.     ++||+|++++.+|++.+++|+.+|++.++...+.+.+++ |..++|+|++ ||..+...
T Consensus         1 ~v~ly~~-----~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~   66 (77)
T TIGR02200         1 TITVYGT-----TWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNP   66 (77)
T ss_pred             CEEEEEC-----CCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCC
Confidence            4789998     699999999999999999999999999988888888887 8899999977 56776654

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=99.12  E-value=1.9e-10  Score=74.16  Aligned_cols=58  Identities=19%  Similarity=0.307  Sum_probs=49.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG  141 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG  141 (169)
                      .|++|++     ++||+|.+++.+|++.     +++|..+|++.+++    +.+..|..++|+++++|++++
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence            4789998     7999999999999865     68899999987765    445568889999999999876

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>PRK10824 glutaredoxin-4; Provisional

Probab=99.08  E-value=2.2e-11  Score=87.59  Aligned_cols=55  Identities=20%  Similarity=0.255  Sum_probs=50.3

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASG   60 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~   60 (169)
                      +++||||||+.|.|+||+++.++|+..|++|.. ++..|++.+..++..+.|+|.+
T Consensus        17 Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVP   72 (115)
T PRK10824         17 ILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFP   72 (115)
T ss_pred             EEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCC
Confidence            689999999999999999999999999999988 9999988888888888888753

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.98  E-value=5.6e-09  Score=69.38  Aligned_cols=70  Identities=14%  Similarity=0.058  Sum_probs=58.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeeccHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGGSDIILNMH  150 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG~d~l~~~~  150 (169)
                      +.||+.     +.||+|.+++.+|+++|++|+.+++..++....++.+.++..++|.+..  +|..+.+.+.+.+..
T Consensus         2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL   73 (77)
T cd03041           2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYL   73 (77)
T ss_pred             ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHH
Confidence            568888     6899999999999999999999999877666778888888899999977  356777777666653

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PTZ00062 glutaredoxin; Provisional

Probab=98.94  E-value=1.7e-10  Score=90.82  Aligned_cols=54  Identities=31%  Similarity=0.469  Sum_probs=50.0

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDAS   59 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~   59 (169)
                      +|+||||+|..|.|+||+++.++|+++|++|.. ||..|++.++.++.++.|++.
T Consensus       115 Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~Tv  169 (204)
T PTZ00062        115 ILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTY  169 (204)
T ss_pred             EEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCC
Confidence            689999999999999999999999999999998 999999888888888888764

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.87  E-value=1.1e-08  Score=64.66  Aligned_cols=68  Identities=18%  Similarity=0.071  Sum_probs=56.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+|+.     +.||+|.+++.+|+..+++|+.+++..++....++++.++..++|.+.++|..+++...+.+.
T Consensus         2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            47777     689999999999999999999998876443223677888999999999999999988766553

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.84  E-value=3.2e-08  Score=65.37  Aligned_cols=68  Identities=16%  Similarity=0.336  Sum_probs=53.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC----CeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK----GEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~----g~~iGG~d~l~~~~  150 (169)
                      ++.||+.     +.||+|++++.+|.+.|++|+.++++.  ..+..+ +.++..++|++.++    |..+.....+.+..
T Consensus         1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL   72 (77)
T cd03040           1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL   72 (77)
T ss_pred             CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCc--hhHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence            4788988     689999999999999999999999853  223445 34788899999987    67777776666543

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.81  E-value=3.7e-08  Score=64.10  Aligned_cols=67  Identities=22%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNMH  150 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~~  150 (169)
                      .||..     +.||+|.+++-+|...|++|+.+.++..+..  ...+.++..++|.++++ |..+++...+.+..
T Consensus         2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL   69 (71)
T cd03037           2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFI   69 (71)
T ss_pred             ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence            46776     6899999999999999999999988754322  22356778899999997 88999988877654

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=98.64  E-value=6.6e-09  Score=72.49  Aligned_cols=51  Identities=22%  Similarity=0.331  Sum_probs=41.9

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV   56 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~   56 (169)
                      +++||||+++.|.|+|+.++.++|.+.|++|.. |+..+++.+..++..+.|
T Consensus        14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~   65 (97)
T TIGR00365        14 VVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW   65 (97)
T ss_pred             EEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC
Confidence            689999999999999999999999999999988 888776554444444433

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.64  E-value=3.5e-08  Score=70.42  Aligned_cols=45  Identities=27%  Similarity=0.431  Sum_probs=39.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS  125 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~  125 (169)
                      |.||++     ++|++|++|+++|+++|++|+.+|+..++..+++|.++.
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~   45 (111)
T cd03036           1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWL   45 (111)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHH
Confidence            578998     799999999999999999999999998877676666544

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.59  E-value=1.7e-07  Score=64.39  Aligned_cols=70  Identities=19%  Similarity=0.171  Sum_probs=54.8

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      ..+.++++.+.-.|.+|+.     ++|++|..+.+++++.     ++++..+|++..++..    +..|-..+|.+++||
T Consensus         3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a----~~~~V~~vPt~vidG   73 (89)
T cd03026           3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEV----EERGIMSVPAIFLNG   73 (89)
T ss_pred             HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHH----HHcCCccCCEEEECC
Confidence            4567777666667889988     7899999998887654     6889999998776543    345678899999999


Q ss_pred             eEee
Q 030914          138 EFIG  141 (169)
Q Consensus       138 ~~iG  141 (169)
                      +.++
T Consensus        74 ~~~~   77 (89)
T cd03026          74 ELFG   77 (89)
T ss_pred             EEEE
Confidence            8765

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.55  E-value=4.9e-07  Score=61.70  Aligned_cols=70  Identities=24%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      ..+.+|+.     +.||+|.+++.+|...|++|+.++++... ..+++.+.++..++|.+.++ |..+.....+.+.
T Consensus        17 ~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y   87 (89)
T cd03055          17 GIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY   87 (89)
T ss_pred             CcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence            45889988     68999999999999999999998886532 23457778888999999998 7888777666554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.55  E-value=5.1e-07  Score=58.61  Aligned_cols=68  Identities=19%  Similarity=0.252  Sum_probs=53.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++||+.     +.||+|.+++.+|+..|++|+.++++... ...++++.+...++|.+..+|..+.....+.+.
T Consensus         1 ~~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   68 (73)
T cd03059           1 MTLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDN-PPEDLAELNPYGTVPTLVDRDLVLYESRIIMEY   68 (73)
T ss_pred             CEEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCC-CCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            357877     68999999999999999999998886432 234667778888999998888877766655554

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.54  E-value=9.8e-08  Score=67.14  Aligned_cols=46  Identities=22%  Similarity=0.369  Sum_probs=39.7

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH  126 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g  126 (169)
                      |+||++     ++|++|++|+++|+++|++|+++||..++..++++.++.+
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~   46 (105)
T cd02977           1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA   46 (105)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence            578998     7899999999999999999999999887766666666654

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.53  E-value=5.2e-07  Score=58.70  Aligned_cols=66  Identities=21%  Similarity=0.240  Sum_probs=52.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~  148 (169)
                      ++|+.     ++||+|.+++.+|.++|++|+.++++.... ..++++.++..++|.+..+ |..+.....+.+
T Consensus         2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence            57776     689999999999999999999988865322 3567788889999999996 887766554443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=98.51  E-value=2.4e-08  Score=68.53  Aligned_cols=43  Identities=28%  Similarity=0.373  Sum_probs=38.2

Q ss_pred             hhhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCcccc
Q 030914            5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTH   47 (169)
Q Consensus         5 ~~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~   47 (169)
                      =+++||||+|+.|.|+|+.++.++|...|++|.. |+..|++.+
T Consensus         9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~   52 (90)
T cd03028           9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVR   52 (90)
T ss_pred             CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence            3689999999999999999999999999999988 988765443

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.50  E-value=8.5e-07  Score=57.78  Aligned_cols=68  Identities=18%  Similarity=0.160  Sum_probs=54.4

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .||+.     +.||+|++++-+|.+.|++|+.++++.  ++..+.++.+.+...++|.+..+|..+.....+...
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   71 (74)
T cd03045           2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY   71 (74)
T ss_pred             EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            57877     789999999999999999999888863  444567788888888999999888776665555443

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.46  E-value=5.2e-07  Score=59.45  Aligned_cols=67  Identities=16%  Similarity=0.217  Sum_probs=56.8

Q ss_pred             EEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           78 LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        78 ly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ||..     +.||+|.++.-+|+..||+|+.+++..... +..+.+.++..++|.+..||..+.+...+.+..
T Consensus         1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL   67 (75)
T PF13417_consen    1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL   67 (75)
T ss_dssp             EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence            4665     689999999999999999999999875443 677888899999999999999999877766653

...

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.46  E-value=3.7e-07  Score=67.06  Aligned_cols=42  Identities=29%  Similarity=0.492  Sum_probs=36.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK  122 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~  122 (169)
                      |.||++     |+|++|++|+++|+++||+|+.+|+..++..+++|.
T Consensus         2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~   43 (131)
T PRK01655          2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIK   43 (131)
T ss_pred             EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHH
Confidence            679998     899999999999999999999999988765555443

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.43  E-value=1.1e-06  Score=56.90  Aligned_cols=67  Identities=16%  Similarity=0.098  Sum_probs=51.5

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~  148 (169)
                      .||+.     +.||+|++++-+|...|++|+.+.++.  +.....++.+.++..++|.+.+ +|..+.....+..
T Consensus         2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~   71 (74)
T cd03051           2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICR   71 (74)
T ss_pred             EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHH
Confidence            57877     789999999999999999998887763  2233456778888899999997 5566665554443

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.43  E-value=1.5e-06  Score=57.43  Aligned_cols=55  Identities=25%  Similarity=0.480  Sum_probs=43.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE  138 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~  138 (169)
                      .|++|+.     ++||+|..++..|++    ++  +.+..+|+..+++..    +..|-.++|+++++|+
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA----MEYGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH----HHcCCccCCEEEECCE
Confidence            4788998     799999999999864    34  567788887776543    3467889999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.42  E-value=1.8e-06  Score=55.81  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=54.1

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .+|..     +.||+|.+++-+|...|++|+.++++.  ++...+.+.+.+...++|.+..+|..+.....+.+
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~   70 (73)
T cd03056           2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILV   70 (73)
T ss_pred             EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence            57776     789999999999999999999988863  33445667778888899999999988877665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.34  E-value=3.6e-06  Score=56.59  Aligned_cols=53  Identities=30%  Similarity=0.455  Sum_probs=42.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCC----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYN----VPISARNILEDPELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      +|++|++     |+|+.|..|+.+|....    +.++.+||+.|+++    .+..+ ..+|++.++|
T Consensus         1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l----~~~Y~-~~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPEL----FEKYG-YRIPVLHIDG   57 (81)
T ss_dssp             -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHH----HHHSC-TSTSEEEETT
T ss_pred             CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHH----HHHhc-CCCCEEEEcC
Confidence            4789999     89999999999998654    56889999988884    33444 5899999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.32  E-value=1.2e-06  Score=62.83  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF  124 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~  124 (169)
                      |.||+.     ++|++|++|+++|+++|++|+.+|+..++.-++++.++
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l   44 (117)
T TIGR01617         1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDI   44 (117)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHH
Confidence            468988     78999999999999999999999999887777766654

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.31  E-value=1.8e-06  Score=59.90  Aligned_cols=89  Identities=18%  Similarity=0.236  Sum_probs=68.3

Q ss_pred             CeEEEeecCC-CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHH--------HHhcCCCCCcEEEeCCeEeeccHH
Q 030914           75 PVMLYMKGVP-EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV--------KAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        75 ~Vvly~k~~~-~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l--------~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      .|.+|+++.+ ...-=.-=.+++.+|+...+.++.+||...++.+.++        +-..|.+.-||||-+++|.|++|.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            4667877542 1111111236778999999999999998877666554        444688999999999999999999


Q ss_pred             HHHHHhcccHHHHHhccc
Q 030914          146 ILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       146 l~~~~~~g~L~~~L~~~~  163 (169)
                      ..+..+.+.|.+.|+-+.
T Consensus        83 F~ea~E~ntl~eFL~lap  100 (108)
T KOG4023|consen   83 FFEAVEQNTLQEFLGLAP  100 (108)
T ss_pred             HHHHHHHHHHHHHHccCC
Confidence            999999999999997553

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.30  E-value=1.5e-06  Score=62.18  Aligned_cols=44  Identities=27%  Similarity=0.525  Sum_probs=37.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF  124 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~  124 (169)
                      |.||+.     ++|++|++|+++|+++|++|+.+|+..++.-+++|+++
T Consensus         2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~   45 (115)
T cd03032           2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEI   45 (115)
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHH
Confidence            678988     78999999999999999999999998876555555544

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.21  E-value=2.2e-06  Score=62.97  Aligned_cols=35  Identities=23%  Similarity=0.402  Sum_probs=32.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      |+||+.     |+|+.|++|+++|+++|++|+.+|+..++
T Consensus         2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~~   36 (131)
T PRK12559          2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSNS   36 (131)
T ss_pred             EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence            679998     89999999999999999999999998754

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.14  E-value=1.1e-05  Score=57.53  Aligned_cols=61  Identities=10%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             HHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        67 i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+++.+..++++|...    +|||+|+.++.+|++..     +.+..+|++.+++    +.+..+-.++|.+++
T Consensus        16 ~~~l~~~~~vvv~f~a----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~----l~~~~~v~~vPt~~i   81 (113)
T cd02975          16 FKEMKNPVDLVVFSSK----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKE----KAEKYGVERVPTTIF   81 (113)
T ss_pred             HHHhCCCeEEEEEeCC----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHH----HHHHcCCCcCCEEEE
Confidence            3445555667777432    79999999999886553     5688889887764    445567899999988

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.14  E-value=3.8e-06  Score=61.83  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      |.||+.     |+|+.|++|+++|+++||+|+.+|+..++
T Consensus         2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~~   36 (132)
T PRK13344          2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKEP   36 (132)
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence            679988     79999999999999999999999998654

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=98.11  E-value=3.9e-06  Score=59.35  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=35.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA  123 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~  123 (169)
                      |.||+.     |+|+.|++|+++|+++|++|+.+|+..++--.++|..
T Consensus         1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~   43 (105)
T cd03035           1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLER   43 (105)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHH
Confidence            578988     8999999999999999999999999886543444433

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.10  E-value=1.4e-05  Score=53.01  Aligned_cols=49  Identities=10%  Similarity=0.287  Sum_probs=38.4

Q ss_pred             CCCccHHHH----HHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           87 PQCGFSSLA----VRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a----~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      +|||.|+.+    .+++++++++++.++|+..++    ..+ .|-.++|.+++||+.+
T Consensus         8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~~-~~v~~vPti~i~G~~~   60 (76)
T TIGR00412         8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----ILE-AGVTATPGVAVDGELV   60 (76)
T ss_pred             CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HHH-cCCCcCCEEEECCEEE
Confidence            489999999    668888999999999973222    222 4789999999999755

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PHA02125 thioredoxin-like protein

Probab=98.10  E-value=1.3e-05  Score=52.88  Aligned_cols=56  Identities=13%  Similarity=0.199  Sum_probs=39.0

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG  141 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG  141 (169)
                      |++|+.     +||+.|+.++.+|++..+.+-.+|.+.++    ++.+..+-.++|.+. +|+.++
T Consensus         2 iv~f~a-----~wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~v~~~PT~~-~g~~~~   57 (75)
T PHA02125          2 IYLFGA-----EWCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHHIRSLPTLV-NTSTLD   57 (75)
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcCCceeCeEE-CCEEEE
Confidence            678887     79999999999998654444444443433    455556788999976 776443

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=98.09  E-value=6.3e-06  Score=67.35  Aligned_cols=60  Identities=22%  Similarity=0.439  Sum_probs=51.4

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG  142 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG  142 (169)
                      +++||..     ..||||.+++.+|+-+|++|..+.|.  |-.|++++ +|..+.+|.+.+.|+-.-.
T Consensus        90 ~l~LyQy-----etCPFCcKVrAFLDyhgisY~VVEVn--pV~r~eIk-~SsykKVPil~~~Geqm~d  149 (370)
T KOG3029|consen   90 DLVLYQY-----ETCPFCCKVRAFLDYHGISYAVVEVN--PVLRQEIK-WSSYKKVPILLIRGEQMVD  149 (370)
T ss_pred             eEEEEee-----ccCchHHHHHHHHhhcCCceEEEEec--chhhhhcc-ccccccccEEEeccceech
Confidence            7999988     56999999999999999999999884  77888874 6778899999998874433

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=98.07  E-value=4.1e-05  Score=52.86  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=57.8

Q ss_pred             CeEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      .+.+|.|...   ....||||++++-+|.+.|++|+.++|+.... -+.+.+.+-...+|.+..+|..|...+.+.+..
T Consensus         5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061           5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence            4667776544   24679999999999999999999888864321 144777787789999998888888877777654

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=98.06  E-value=3.1e-05  Score=50.26  Aligned_cols=56  Identities=16%  Similarity=0.035  Sum_probs=47.6

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ..||+|.+++.+|+..|++|+.++++...        .+...++|.+..+|..+.++..+.+..
T Consensus        14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL   69 (72)
T cd03054          14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYL   69 (72)
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHH
Confidence            47999999999999999999999987532        456679999999999999888776654

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=98.04  E-value=7.2e-06  Score=58.76  Aligned_cols=37  Identities=24%  Similarity=0.495  Sum_probs=33.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE  116 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~  116 (169)
                      .|+||+.     |.|+.|++|+++|+++|++|+.+|+..++-
T Consensus         1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p~   37 (113)
T cd03033           1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEPW   37 (113)
T ss_pred             CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCCC
Confidence            3789998     899999999999999999999999987653

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=98.01  E-value=5e-05  Score=49.57  Aligned_cols=70  Identities=11%  Similarity=-0.053  Sum_probs=55.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      +.+|..     +.||+|.+++-+|...|++|+.+.++..  +...+.+++.+...++|.+..+|..+.....+.+..
T Consensus         2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL   73 (76)
T cd03053           2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL   73 (76)
T ss_pred             eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            467877     6899999999999999999998877642  233456778888899999998888887776666553

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.97  E-value=6.2e-05  Score=49.07  Aligned_cols=67  Identities=18%  Similarity=0.047  Sum_probs=50.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC-CCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH-WPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g-~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+|..     +.||+|.+++-+|...|++|+.++++.. ....++++.+. ..++|.+..+|.-+.....+.+.
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y   69 (74)
T cd03058           2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEY   69 (74)
T ss_pred             EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence            46766     6799999999999999999999877643 12234556665 47999999888777776665554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=97.96  E-value=5.3e-05  Score=49.75  Aligned_cols=69  Identities=12%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.+|..     +.|++|.+++-+|.++|++|+.+.++..  .....++.+.+...++|.+..||..+.....+.+.
T Consensus         1 ~~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y   71 (73)
T cd03052           1 LVLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY   71 (73)
T ss_pred             CEEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            356766     6899999999999999999998887542  22345688888899999999888877766655543

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.90  E-value=0.00012  Score=47.80  Aligned_cols=69  Identities=14%  Similarity=0.069  Sum_probs=54.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      +.+|..     +.|+.|++++-+|...|++|+.+.++. ....++++..+...++|.+..+|..+.....+....
T Consensus         2 ~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   70 (73)
T cd03076           2 YTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTY-EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL   70 (73)
T ss_pred             cEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecH-HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            567766     569999999999999999999998864 233445777777889999999998888776666543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.89  E-value=0.00012  Score=52.92  Aligned_cols=73  Identities=11%  Similarity=0.193  Sum_probs=44.3

Q ss_pred             HHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCH--------HHHHHHHHhcC----CC
Q 030914           66 VVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDP--------ELKSAVKAFSH----WP  128 (169)
Q Consensus        66 ~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~--------~~~~~l~~~~g----~~  128 (169)
                      .+.+.+++ ..+++|...    +|||+|+.+.-.|    ++.++++-.+|++.++        ++. ++.+..+    -.
T Consensus        15 ~~~~~i~~~~~~iv~f~~----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~-~~~~~~~i~~~i~   89 (122)
T TIGR01295        15 RALEALDKKETATFFIGR----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLT-AFRSRFGIPTSFM   89 (122)
T ss_pred             HHHHHHHcCCcEEEEEEC----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHH-HHHHHcCCcccCC
Confidence            34444444 444554432    7999999976655    4556888899998653        222 3333333    34


Q ss_pred             CCcEE--EeCCeEeecc
Q 030914          129 TFPQI--FIKGEFIGGS  143 (169)
Q Consensus       129 t~P~v--fi~g~~iGG~  143 (169)
                      .+|.+  |-+|+.++..
T Consensus        90 ~~PT~v~~k~Gk~v~~~  106 (122)
T TIGR01295        90 GTPTFVHITDGKQVSVR  106 (122)
T ss_pred             CCCEEEEEeCCeEEEEE
Confidence            58988  5588766654

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.86  E-value=4e-05  Score=67.84  Aligned_cols=74  Identities=15%  Similarity=0.136  Sum_probs=54.9

Q ss_pred             CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      .+++..++|+++-++..|.+|.+     +.||+|.++++.+++.     .|..+.+|....+++.+    ..+..++|++
T Consensus       103 l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~----~~~v~~VP~~  173 (517)
T PRK15317        103 LDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVE----ARNIMAVPTV  173 (517)
T ss_pred             CCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHH----hcCCcccCEE
Confidence            33455677777777778999998     7899999999988655     35566666666666433    4467799999


Q ss_pred             EeCCeEee
Q 030914          134 FIKGEFIG  141 (169)
Q Consensus       134 fi~g~~iG  141 (169)
                      ||||+.+.
T Consensus       174 ~i~~~~~~  181 (517)
T PRK15317        174 FLNGEEFG  181 (517)
T ss_pred             EECCcEEE
Confidence            99998654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.85  E-value=8.4e-05  Score=51.52  Aligned_cols=66  Identities=12%  Similarity=0.107  Sum_probs=43.0

Q ss_pred             HHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHH-------hcC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           66 VVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVL-------GAY--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        66 ~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L-------~~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+++++++++ |+|+..+    +||++|++....+       +..  ++.+..+|++.+......+.+..+..++|.+++
T Consensus         3 ~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           3 ALAQALAQGKPVFVDFTA----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHHcCCeEEEEEEc----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            3455565555 4444443    7999999887543       111  566777888776555566777778899998754

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.84  E-value=4.8e-05  Score=67.38  Aligned_cols=73  Identities=11%  Similarity=0.066  Sum_probs=53.5

Q ss_pred             cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      +++..+.|+++-+...|.+|.+     +.||+|.+|++.+++..     |..+.+|....+++    .+..+..++|++|
T Consensus       105 ~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~----~~~~~v~~VP~~~  175 (515)
T TIGR03140       105 DEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE----VEALGIQGVPAVF  175 (515)
T ss_pred             CHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH----HHhcCCcccCEEE
Confidence            3455677777767778999999     78999999999887654     44555565555554    3344667999999


Q ss_pred             eCCeEee
Q 030914          135 IKGEFIG  141 (169)
Q Consensus       135 i~g~~iG  141 (169)
                      |||+.++
T Consensus       176 i~~~~~~  182 (515)
T TIGR03140       176 LNGEEFH  182 (515)
T ss_pred             ECCcEEE
Confidence            9998664

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PHA02278 thioredoxin-like protein

Probab=97.82  E-value=0.00017  Score=50.67  Aligned_cols=66  Identities=14%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      +..+|+|+...    +||+.|+.+...|++.      .+++..+||+.++.....+.+..+-.++|.+  |-||+.++
T Consensus        13 ~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~   86 (103)
T PHA02278         13 QKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVK   86 (103)
T ss_pred             CCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEE
Confidence            46677777664    8999999888776443      2568888998763223335555566777776  55888653

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.82  E-value=0.00012  Score=47.13  Aligned_cols=67  Identities=18%  Similarity=0.121  Sum_probs=51.4

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .+|..     +.|++|.+++-+|...|++|+.+.++..  ......+.+.+...++|.+..+|..+.....+..
T Consensus         2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~   70 (73)
T cd03042           2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIE   70 (73)
T ss_pred             EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence            46655     5789999999999999999998877642  2334567778888999999999887776655544

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.80  E-value=0.00016  Score=46.77  Aligned_cols=68  Identities=18%  Similarity=0.091  Sum_probs=51.9

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .||..     +.|+.|.+++-+|...|++|+.+.++........+.+.+...++|.+..+|..+.....+.+.
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y   69 (72)
T cd03039           2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY   69 (72)
T ss_pred             EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence            46655     579999999999999999999998864322223356677788999999998888776655544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.79  E-value=0.00014  Score=49.95  Aligned_cols=59  Identities=19%  Similarity=0.269  Sum_probs=41.4

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .|+++..+    +||+.|+.+...|++      .++.+..+|++.++++.    ...+..++|.+++  +|+.++
T Consensus        15 ~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~----~~~~v~~vPt~~i~~~g~~v~   81 (97)
T cd02949          15 LILVLYTS----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIA----EAAGIMGTPTVQFFKDKELVK   81 (97)
T ss_pred             eEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHH----HHCCCeeccEEEEEECCeEEE
Confidence            34444443    799999999988865      34778888988777653    3446788998755  776553

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=97.72  E-value=0.00023  Score=46.61  Aligned_cols=55  Identities=20%  Similarity=0.147  Sum_probs=46.0

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      .||+|.++..+|...|++|+.+.+..        ++.+...++|.+..+|+.+.+...+.+..
T Consensus        16 ~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL   70 (75)
T cd03080          16 LSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHL   70 (75)
T ss_pred             CCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence            58999999999999999999888753        25667889999999999888877766543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.71  E-value=0.00014  Score=57.27  Aligned_cols=55  Identities=18%  Similarity=0.342  Sum_probs=41.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE  138 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~  138 (169)
                      .|++|+.     +|||+|..++.++++.     .+.+..+|++.++++.    +..|-.++|+++++++
T Consensus       136 ~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~----~~~~V~~vPtl~i~~~  195 (215)
T TIGR02187       136 RIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLA----EKYGVMSVPKIVINKG  195 (215)
T ss_pred             EEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHH----HHhCCccCCEEEEecC
Confidence            3556777     7999999999988754     3667778888776643    3457889999999754

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.71  E-value=0.00019  Score=46.50  Aligned_cols=66  Identities=12%  Similarity=0.097  Sum_probs=49.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhc--CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGA--YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~--~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~  148 (169)
                      .+|..     +.||+|.+++-+|..  .|++|+.+.++.. ....++.+.+...++|.+.. ||..+.....+.+
T Consensus         2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~   70 (73)
T cd03049           2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNPLGKIPALVLDDGEALFDSRVICE   70 (73)
T ss_pred             EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHh
Confidence            46665     689999999999999  8999999888642 12244566777889999985 6777766655544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=97.69  E-value=0.00018  Score=56.39  Aligned_cols=67  Identities=22%  Similarity=0.305  Sum_probs=51.3

Q ss_pred             EEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHHHh
Q 030914           78 LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        78 ly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~~~  151 (169)
                      +|..     ..||+|.+++-+|...|++|+.+++..++.. . ..+.++..++|.+. .||..+++...+.+..+
T Consensus         2 Ly~~-----~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~-~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~   69 (209)
T TIGR02182         2 LYIY-----DHCPFCVRARMIFGLKNIPVEKHVLLNDDEE-T-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFD   69 (209)
T ss_pred             eecC-----CCCChHHHHHHHHHHcCCCeEEEECCCCcch-h-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence            5665     5799999999999999999999988654322 2 24566778999997 78888888777666433

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.65  E-value=0.00039  Score=45.98  Aligned_cols=68  Identities=15%  Similarity=0.059  Sum_probs=51.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeC---CeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIK---GEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~---g~~iGG~d~l~~~  149 (169)
                      +.||..     +. |+|.++.-+|...|++|+.+.+..  +....+++.+.+...++|.+..+   |..+.....+.+.
T Consensus         2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y   74 (81)
T cd03048           2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY   74 (81)
T ss_pred             eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence            467865     44 999999999999999999877763  33445667788888899999887   6777665555544

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>PRK10387 glutaredoxin 2; Provisional

Probab=97.63  E-value=0.00031  Score=54.37  Aligned_cols=68  Identities=21%  Similarity=0.305  Sum_probs=51.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-EeCCeEeeccHHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQI-FIKGEFIGGSDIILNMH  150 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-fi~g~~iGG~d~l~~~~  150 (169)
                      +.||+.     +.||+|.+++-+|+..|++|+.+++...+.. .. .+.++..++|.+ .-+|..+.....+....
T Consensus         1 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL   69 (210)
T PRK10387          1 MKLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYI   69 (210)
T ss_pred             CEEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHH
Confidence            357876     5799999999999999999999998654322 22 345667899999 46788888776665544

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.62  E-value=0.00019  Score=47.46  Aligned_cols=48  Identities=21%  Similarity=0.392  Sum_probs=35.4

Q ss_pred             CCCccHHHHHHH----HhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeE
Q 030914           87 PQCGFSSLAVRV----LGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEF  139 (169)
Q Consensus        87 ~~C~~c~~a~~~----L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~  139 (169)
                      ++||+|.++.++    +...+++++.+|+ .+.+   .+ ...|-.++|.++|||+.
T Consensus         8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~~---~~-~~ygv~~vPalvIng~~   59 (76)
T PF13192_consen    8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDFE---EI-EKYGVMSVPALVINGKV   59 (76)
T ss_dssp             SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTHH---HH-HHTT-SSSSEEEETTEE
T ss_pred             CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCHH---HH-HHcCCCCCCEEEECCEE
Confidence            469999977774    4667888988998 3322   23 44578999999999984

...

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.61  E-value=9.5e-05  Score=53.34  Aligned_cols=44  Identities=18%  Similarity=0.335  Sum_probs=36.7

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA  123 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~  123 (169)
                      .|.||..     |.|.-|++|+++|+++||+|+.+|+..++--+++|++
T Consensus         2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~   45 (117)
T COG1393           2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKK   45 (117)
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHH
Confidence            3788987     8999999999999999999999999876644444443

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.56  E-value=0.00037  Score=41.65  Aligned_cols=57  Identities=25%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHh-----cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLG-----AYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE  138 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~-----~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~  138 (169)
                      +++|..     .+|++|.++...+.     ..++.+..+++.......+.. ...+..++|.+++.+.
T Consensus         1 l~~~~~-----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~P~~~~~~~   62 (69)
T cd01659           1 LVLFYA-----PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYGVGGVPTLVVFGP   62 (69)
T ss_pred             CEEEEC-----CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCCCccccEEEEEeC
Confidence            355665     58999999999999     677899999998877665542 3356788999988763

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=97.55  E-value=0.00036  Score=46.60  Aligned_cols=64  Identities=17%  Similarity=0.058  Sum_probs=49.0

Q ss_pred             CCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHHH
Q 030914           86 FPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNMH  150 (169)
Q Consensus        86 ~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~~  150 (169)
                      .+.||+|.+++-+|...|++|+.+.+...  .....++ +.++..++|.+..+ |..+.+...+.+..
T Consensus        13 ~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL   79 (84)
T cd03038          13 RAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYL   79 (84)
T ss_pred             CCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHH
Confidence            47899999999999999999998877532  2233344 55677899999888 88888777666653

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.55  E-value=0.00028  Score=63.09  Aligned_cols=71  Identities=18%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHh----cC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY-NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      +++..+.|+++-+...|.+|..     ++||+|.++.+.++    +. +|..+.+|+...+++    .+..+..++|.++
T Consensus       464 ~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~----~~~~~v~~vP~~~  534 (555)
T TIGR03143       464 GEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDL----KDEYGIMSVPAIV  534 (555)
T ss_pred             CHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHH----HHhCCceecCEEE
Confidence            3455667776666667889887     78999999888553    44 688999999877664    3344778999999


Q ss_pred             eCCeE
Q 030914          135 IKGEF  139 (169)
Q Consensus       135 i~g~~  139 (169)
                      |||+.
T Consensus       535 i~~~~  539 (555)
T TIGR03143       535 VDDQQ  539 (555)
T ss_pred             ECCEE
Confidence            99963

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.55  E-value=0.00064  Score=44.48  Aligned_cols=59  Identities=24%  Similarity=0.394  Sum_probs=42.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      .+++|+..+    ++|+.|..+...|++     .++.+..+|+..+.++...    .+-..+|.+++  +|+.+
T Consensus        11 ~~~ll~~~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~v~~~P~~~~~~~g~~~   76 (93)
T cd02947          11 KPVVVDFWA----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YGVRSIPTFLFFKNGKEV   76 (93)
T ss_pred             CcEEEEEEC----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cCcccccEEEEEECCEEE
Confidence            444444433    799999999999977     7788889999876665443    35678898766  77643

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=97.52  E-value=0.00015  Score=47.11  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=48.5

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCC---CHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHHHh
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILE---DPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNMHQ  151 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~---~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~~~  151 (169)
                      .||||.++.-+|..+|++|+..-+..   +.....++.++++..++|.+.. +|..+.....+.+..+
T Consensus         1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            49999999999999999998766622   2222256788999999999998 8898888777766543

...

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=97.52  E-value=0.0013  Score=46.77  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=44.1

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeec
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGG  142 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG  142 (169)
                      +...|+++...    |||+.|+.+...|++.     ++.+..+|++..+++.+    ..+-.++|.+  |-+|+-++-
T Consensus        21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~----~~~v~~vPt~l~fk~G~~v~~   90 (113)
T cd02989          21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVE----KLNIKVLPTVILFKNGKTVDR   90 (113)
T ss_pred             CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHH----HCCCccCCEEEEEECCEEEEE
Confidence            34566666554    8999999988877542     47788889988776543    3356677776  668876653

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=97.51  E-value=0.00016  Score=52.72  Aligned_cols=36  Identities=25%  Similarity=0.531  Sum_probs=32.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      .+.||..     |.|.-|++|+++|+++||+|+.+|+..++
T Consensus         2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p   37 (126)
T TIGR01616         2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEP   37 (126)
T ss_pred             eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence            4678988     89999999999999999999999997643

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=97.49  E-value=0.00085  Score=43.79  Aligned_cols=68  Identities=19%  Similarity=0.143  Sum_probs=51.5

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+|..     +.+++|+++.-+|...|++|+.+.++.  .+...+++.+.+...++|.+..+|..+.....+...
T Consensus         2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y   71 (76)
T cd03050           2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY   71 (76)
T ss_pred             EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            46766     679999999999999999999887763  222334677778889999998888766665554443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>PRK10026 arsenate reductase; Provisional

Probab=97.48  E-value=0.00018  Score=53.47  Aligned_cols=37  Identities=22%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      ..|.||..     |.|.-|++|+++|+++|++|+.+|+..++
T Consensus         2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~p   38 (141)
T PRK10026          2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETP   38 (141)
T ss_pred             CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCC
Confidence            35789988     89999999999999999999999998754

>PRK10853 putative reductase; Provisional

Probab=97.47  E-value=0.00017  Score=52.00  Aligned_cols=36  Identities=25%  Similarity=0.178  Sum_probs=32.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE  116 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~  116 (169)
                      |.||..     |.|.-|++|+++|+++|++|+.+|+..++-
T Consensus         2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~   37 (118)
T PRK10853          2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDGL   37 (118)
T ss_pred             EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCCc
Confidence            678887     799999999999999999999999987553

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=97.46  E-value=0.0002  Score=51.05  Aligned_cols=35  Identities=23%  Similarity=0.444  Sum_probs=31.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      |.||..     |.|.-|++|+++|+++|++|+.+|+.+++
T Consensus         1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~~   35 (112)
T cd03034           1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKTP   35 (112)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccCC
Confidence            468888     78999999999999999999999997754

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=97.46  E-value=0.0002  Score=51.19  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=32.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE  116 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~  116 (169)
                      |.+|..     |.|.-|++|+++|+++|++|+.+|+...+-
T Consensus         1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p~   36 (114)
T TIGR00014         1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNPP   36 (114)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCCc
Confidence            468888     789999999999999999999999987553

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.43  E-value=0.00098  Score=46.36  Aligned_cols=63  Identities=17%  Similarity=0.048  Sum_probs=41.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iG  141 (169)
                      ..|+|+..+    +||+.|+.....|++.     ++.+-.+|++.++... .+.+..+...+|.++  -+|+.++
T Consensus        16 k~vvv~F~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~-~l~~~~~V~~~Pt~~~~~~G~~v~   85 (103)
T cd02985          16 RLVVLEFAL----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTM-ELCRREKIIEVPHFLFYKDGEKIH   85 (103)
T ss_pred             CEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHH-HHHHHcCCCcCCEEEEEeCCeEEE
Confidence            445555544    7999999888877542     4667788887765433 344445677888664  4887553

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=97.39  E-value=0.001  Score=43.49  Aligned_cols=67  Identities=12%  Similarity=-0.022  Sum_probs=50.7

Q ss_pred             EEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           78 LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        78 ly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      +|..     +.|++|.+++-+|...|++|+.++++... ....++++.+...++|.+..+ |..+.....+.+.
T Consensus         3 Ly~~-----~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y   71 (75)
T cd03044           3 LYTY-----PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY   71 (75)
T ss_pred             EecC-----CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence            5655     68999999999999999999998887532 233567778888999999985 7666655444443

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.37  E-value=0.00073  Score=48.52  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=41.1

Q ss_pred             CeEE-EeecCCCCCCCccHHHHHHHHhcC-----C-CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           75 PVML-YMKGVPEFPQCGFSSLAVRVLGAY-----N-VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        75 ~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~-----~-v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      .|+| |+.     +||+.|+.+..+|++.     + +.+-.+|++.++++.    +..|-.++|.+  |-||+.++
T Consensus        16 ~vVV~F~A-----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la----~~~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          16 VVVIRFGR-----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFN----KMYELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             EEEEEEEC-----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHH----HHcCCCCCCEEEEEECCEEEE
Confidence            3554 555     7999999988877433     2 467788999887654    44467788887  55888764

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=97.34  E-value=0.0013  Score=52.90  Aligned_cols=75  Identities=13%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             eEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914           76 VMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        76 Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~  151 (169)
                      |.+|.|...   ..+.||+|+++.-+|...|++|+.+.|+.... .+++.+.+...++|.+..+|..|.....+.+..+
T Consensus         3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~   80 (236)
T TIGR00862         3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE   80 (236)
T ss_pred             eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence            556665432   35789999999999999999999888864322 3567788888899999888888888777666544

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=97.33  E-value=0.0009  Score=45.41  Aligned_cols=70  Identities=20%  Similarity=0.361  Sum_probs=44.5

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIF-  134 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-  134 (169)
                      +.++.+.+  ...+++|+...    ++|+.|+.....|.+    +  ++.+-.+|++.++.    +.+..+...+|.++ 
T Consensus         8 ~f~~~i~~--~~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~   77 (103)
T PF00085_consen    8 NFEKFINE--SDKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYGVKSVPTIIF   77 (103)
T ss_dssp             THHHHHTT--TSSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTTCSSSSEEEE
T ss_pred             HHHHHHHc--cCCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccch----hhhccCCCCCCEEEE
Confidence            33444443  23555555443    799999999877732    3  46777888876654    34445678889884 


Q ss_pred             -eCCeEee
Q 030914          135 -IKGEFIG  141 (169)
Q Consensus       135 -i~g~~iG  141 (169)
                       -+|+.+.
T Consensus        78 ~~~g~~~~   85 (103)
T PF00085_consen   78 FKNGKEVK   85 (103)
T ss_dssp             EETTEEEE
T ss_pred             EECCcEEE
Confidence             4776554

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0012  Score=43.83  Aligned_cols=62  Identities=23%  Similarity=0.284  Sum_probs=44.7

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHH-----------HhcCCCCCcEEEeC-CeEeecc
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVK-----------AFSHWPTFPQIFIK-GEFIGGS  143 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~-----------~~~g~~t~P~vfi~-g~~iGG~  143 (169)
                      ++|..     ..||.|..+++.|++.+|+|+.++|..+- .+++.|+           +..|.-.+|.+..+ |+-|-|.
T Consensus         5 ~lfgs-----n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~~   79 (85)
T COG4545           5 KLFGS-----NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLGD   79 (85)
T ss_pred             eeecc-----ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEec
Confidence            56766     47999999999999999999999997632 2222221           12367789999875 5555553

>PTZ00051 thioredoxin; Provisional

Probab=97.30  E-value=0.0015  Score=44.42  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=43.2

Q ss_pred             HHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeC
Q 030914           65 EVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIK  136 (169)
Q Consensus        65 ~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~  136 (169)
                      +.++++++.++ ++|+...    +||+.|+.....|...     ++.+..+|++.+..+.    +..+-..+|.+  |-+
T Consensus         9 ~~~~~~~~~~~~vli~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~   80 (98)
T PTZ00051          9 AEFESTLSQNELVIVDFYA----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVA----EKENITSMPTFKVFKN   80 (98)
T ss_pred             HHHHHHHhcCCeEEEEEEC----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHH----HHCCCceeeEEEEEeC
Confidence            34455555544 4444333    7999999998877652     4677778887655443    33355677765  447


Q ss_pred             CeEeec
Q 030914          137 GEFIGG  142 (169)
Q Consensus       137 g~~iGG  142 (169)
                      |+.++.
T Consensus        81 g~~~~~   86 (98)
T PTZ00051         81 GSVVDT   86 (98)
T ss_pred             CeEEEE
Confidence            765543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00081  Score=55.55  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=57.3

Q ss_pred             cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      ..+.+..|-+.-...||+++...    |||+.|+....+|+..    +  +..-.+|++.++.+-..    .|-.++|.|
T Consensus        30 ~anfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----fgiqsIPtV  101 (304)
T COG3118          30 EANFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----FGVQSIPTV  101 (304)
T ss_pred             HhHHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----hCcCcCCeE
Confidence            34566666666666688777664    9999999999888644    3  44567888888876544    478899998


Q ss_pred             --EeCCeEeeccH
Q 030914          134 --FIKGEFIGGSD  144 (169)
Q Consensus       134 --fi~g~~iGG~d  144 (169)
                        |++|+.|-||-
T Consensus       102 ~af~dGqpVdgF~  114 (304)
T COG3118         102 YAFKDGQPVDGFQ  114 (304)
T ss_pred             EEeeCCcCccccC
Confidence              78999888763

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.26  E-value=0.0023  Score=41.38  Aligned_cols=67  Identities=10%  Similarity=-0.007  Sum_probs=50.8

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .+|..     +.+++|.++.-+|.+.|++|+.+++..  ++...+.+++.+...++|.+..+|..+.....+..
T Consensus         2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~   70 (73)
T cd03047           2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR   70 (73)
T ss_pred             EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence            46655     578999999999999999999887753  23344567778888899999888877765544433

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=97.24  E-value=0.0015  Score=51.04  Aligned_cols=68  Identities=18%  Similarity=0.260  Sum_probs=53.4

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .+.||+.     +.|++|.++.-+|.+.|++|+.+.|+.. ....++.+.+...++|.+..+|..+--...+..
T Consensus        10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~   77 (211)
T PRK09481         10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNPYQSVPTLVDRELTLYESRIIME   77 (211)
T ss_pred             eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHH
Confidence            3678987     6899999999999999999999988743 223467778888899999988877665544443

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=97.23  E-value=0.0013  Score=47.10  Aligned_cols=69  Identities=17%  Similarity=0.254  Sum_probs=41.8

Q ss_pred             HHHHHHhhcC--CeEEEeecCCCCCCCccHHHHHHHHh-------c--CCCCeEEEEcCCCHHH---------HHHHHHh
Q 030914           65 EVVEQDVKEN--PVMLYMKGVPEFPQCGFSSLAVRVLG-------A--YNVPISARNILEDPEL---------KSAVKAF  124 (169)
Q Consensus        65 ~~i~~~~~~~--~Vvly~k~~~~~~~C~~c~~a~~~L~-------~--~~v~~~~~di~~~~~~---------~~~l~~~  124 (169)
                      +.++++.+.+  +|+|+..+    +||++|++....+.       .  .++.+..+|++.+..+         ...+...
T Consensus         4 ~~~~~a~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~   79 (125)
T cd02951           4 EDLAEAAADGKKPLLLLFSQ----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARK   79 (125)
T ss_pred             HHHHHHHHcCCCcEEEEEeC----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHH
Confidence            4455666666  55555544    79999998875442       1  2355566777654321         2345555


Q ss_pred             cCCCCCcEE-EeCC
Q 030914          125 SHWPTFPQI-FIKG  137 (169)
Q Consensus       125 ~g~~t~P~v-fi~g  137 (169)
                      .+..++|.+ |+++
T Consensus        80 ~~v~~~Pt~~~~~~   93 (125)
T cd02951          80 YRVRFTPTVIFLDP   93 (125)
T ss_pred             cCCccccEEEEEcC
Confidence            678899996 4543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=97.19  E-value=0.0016  Score=44.59  Aligned_cols=62  Identities=11%  Similarity=0.252  Sum_probs=41.3

Q ss_pred             HHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           68 EQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        68 ~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      +++++...++.|..     +||++|++....+++.       ++.+-.+|++.++.+.    ...+..++|.+++  +|+
T Consensus        12 ~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~----~~~~i~~~Pt~~~~~~g~   82 (101)
T cd02994          12 TLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLS----GRFFVTALPTIYHAKDGV   82 (101)
T ss_pred             HHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHH----HHcCCcccCEEEEeCCCC
Confidence            34455555666666     7999999888776432       4667778887776543    3346778888865  554

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=97.15  E-value=0.0045  Score=43.68  Aligned_cols=67  Identities=12%  Similarity=0.134  Sum_probs=44.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeeccHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGSDII  146 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~d~l  146 (169)
                      .+|+|+...    |||+.|+.+...|++.     ++.|-.+|++.+     .+.+..+-.++|.+  |-+|+.++...-.
T Consensus        25 ~~vvv~F~a----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~   95 (113)
T cd02957          25 TRVVVHFYE----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVGF   95 (113)
T ss_pred             CEEEEEEeC----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEecH
Confidence            455554433    8999999988877542     466777777644     45555677888877  6699887655444


Q ss_pred             HHH
Q 030914          147 LNM  149 (169)
Q Consensus       147 ~~~  149 (169)
                      ..+
T Consensus        96 ~~~   98 (113)
T cd02957          96 EEL   98 (113)
T ss_pred             HHh
Confidence            433

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK09381 trxA thioredoxin; Provisional

Probab=97.13  E-value=0.0018  Score=45.03  Aligned_cols=62  Identities=16%  Similarity=0.363  Sum_probs=42.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeec
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGG  142 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG  142 (169)
                      ..+++|+..+    +|||.|+.+...|++    +  ++.+-.+|++.++.+.    ...+..++|.+++  +|+.++-
T Consensus        21 ~~~vvv~f~~----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~~   90 (109)
T PRK09381         21 DGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVAAT   90 (109)
T ss_pred             CCeEEEEEEC----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHH----HhCCCCcCCEEEEEeCCeEEEE
Confidence            3455555443    799999998876643    2  3567778888776543    3447789998855  8886653

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=97.11  E-value=0.0028  Score=42.88  Aligned_cols=59  Identities=15%  Similarity=0.240  Sum_probs=39.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~i  140 (169)
                      .+|+|+...    +||+.|+.....|.+.      .+.+-.+|++.++++    .+..+-..+|.++  -+|+.+
T Consensus        13 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          13 VPVVVDFWA----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQI----AQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             CeEEEEEEC----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHH----HHHcCCCCCCEEEEEeCCEEe
Confidence            356666554    7999999988777542      244567787776654    3344677889885  477654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>TIGR01068 thioredoxin thioredoxin

Probab=97.10  E-value=0.0089  Score=40.16  Aligned_cols=59  Identities=24%  Similarity=0.494  Sum_probs=41.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .|+||...    ++|+.|+.....|++    .  ++.+-.+|++.++++.    +..|..++|.+++  +|+.+.
T Consensus        16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068        16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIA----AKYGIRSIPTLLLFKNGKEVD   82 (101)
T ss_pred             cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHH----HHcCCCcCCEEEEEeCCcEee
Confidence            56666554    799999988776644    2  3667778887776543    3447789999866  776543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=97.08  E-value=0.0033  Score=40.94  Aligned_cols=62  Identities=16%  Similarity=0.104  Sum_probs=49.3

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      ..|++|.++.-+|...|++|+.+.+.... +...++++.+...++|.+..+|..+.....+..
T Consensus         8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   70 (73)
T cd03043           8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICE   70 (73)
T ss_pred             CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHH
Confidence            57999999999999999999988776432 234567788888999999999887776665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.07  E-value=0.0027  Score=50.03  Aligned_cols=63  Identities=13%  Similarity=0.198  Sum_probs=41.0

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcC--CCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNIL--EDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~--~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +...|++|+.  ++++|||+|+.+..+|++.     ++++..++++  .+++    +.+..+-.++|.+.+  ||+.+
T Consensus        19 ~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~----l~~~~~V~~~Pt~~~f~~g~~~   90 (215)
T TIGR02187        19 NPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE----EAEKYGVERVPTTIILEEGKDG   90 (215)
T ss_pred             CCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH----HHHHcCCCccCEEEEEeCCeee
Confidence            3445667755  4458999999999988655     2455567776  3443    444456788888865  65443

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=97.05  E-value=0.0058  Score=43.03  Aligned_cols=61  Identities=18%  Similarity=0.159  Sum_probs=40.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHH----hc---CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEee
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVL----GA---YNVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIG  141 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~---~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iG  141 (169)
                      ..+++|+..+    |||+.|+.....+    ++   .++.+-.+|++.++.+    ....|..++|.++  .+|+.++
T Consensus        24 ~~~vlV~F~a----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l----~~~~~V~~~Pt~~i~~~g~~~~   93 (111)
T cd02963          24 KKPYLIKITS----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRL----ARKLGAHSVPAIVGIINGQVTF   93 (111)
T ss_pred             CCeEEEEEEC----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHH----HHHcCCccCCEEEEEECCEEEE
Confidence            4556666554    7999998776554    22   2567778888776654    3444778899874  5787553

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.01  E-value=0.0046  Score=40.28  Aligned_cols=67  Identities=19%  Similarity=0.239  Sum_probs=48.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      .+|..     +.| .|.+++-+|.+.|++|+.++++..  .....++.+.+...++|.+..+ |..+.....+.+.
T Consensus         2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y   71 (77)
T cd03057           2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY   71 (77)
T ss_pred             EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence            46655     344 478888999999999998777542  2335667788889999999887 7766665555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=96.95  E-value=0.0057  Score=39.50  Aligned_cols=61  Identities=11%  Similarity=0.006  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           90 GFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        90 ~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      +.|.+++-+|...|++|+.+.++..  .....++.+.+...++|.+..+|..+.....+....
T Consensus         9 ~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL   71 (76)
T cd03046           9 SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYL   71 (76)
T ss_pred             CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            5688999999999999998877642  233456777788889999999998887776666543

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>PRK10996 thioredoxin 2; Provisional

Probab=96.95  E-value=0.0053  Score=45.17  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=42.0

Q ss_pred             HHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--C
Q 030914           66 VVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--K  136 (169)
Q Consensus        66 ~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~  136 (169)
                      .++++++. ..|+|+...    +||+.|++....|.+.      ++.+-.+|++.++++.    +..+..++|.+++  +
T Consensus        44 ~~~~~i~~~k~vvv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~V~~~Ptlii~~~  115 (139)
T PRK10996         44 TLDKLLQDDLPVVIDFWA----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELS----ARFRIRSIPTIMIFKN  115 (139)
T ss_pred             HHHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHH----HhcCCCccCEEEEEEC
Confidence            34444443 445555543    7999999887766432      3556677887776643    3446677887744  7


Q ss_pred             CeEe
Q 030914          137 GEFI  140 (169)
Q Consensus       137 g~~i  140 (169)
                      |+.+
T Consensus       116 G~~v  119 (139)
T PRK10996        116 GQVV  119 (139)
T ss_pred             CEEE
Confidence            8755

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=96.95  E-value=0.0038  Score=46.93  Aligned_cols=62  Identities=15%  Similarity=0.199  Sum_probs=41.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHh----cC---CCCeEEEEcCCCHHHHHHHHHhc--CCCCCcEE--EeCCeEeec
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLG----AY---NVPISARNILEDPELKSAVKAFS--HWPTFPQI--FIKGEFIGG  142 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~----~~---~v~~~~~di~~~~~~~~~l~~~~--g~~t~P~v--fi~g~~iGG  142 (169)
                      |+.|..     +||+.|+.....|+    ++   ++.+-.+|++.++++.+.+.-.+  +.+++|.+  |.+|+.++.
T Consensus        51 vV~Fya-----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r  123 (152)
T cd02962          51 LVEFFT-----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR  123 (152)
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence            445555     79999998887663    22   37788899998887766553222  12346765  678887653

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=96.92  E-value=0.0044  Score=43.08  Aligned_cols=48  Identities=13%  Similarity=0.214  Sum_probs=34.0

Q ss_pred             CCCccHHHHHHHHhcC------------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCe
Q 030914           87 PQCGFSSLAVRVLGAY------------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~  138 (169)
                      |||++|++....+++.            .+.+-.+|++.+++    +.+..|..++|.++  -+|+
T Consensus        28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Ptl~~~~~g~   89 (108)
T cd02996          28 DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYRINKYPTLKLFRNGM   89 (108)
T ss_pred             CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCCCCcCCEEEEEeCCc
Confidence            8999999988777421            35677788887755    44445788999884  4665

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.88  E-value=0.0087  Score=41.38  Aligned_cols=59  Identities=10%  Similarity=0.144  Sum_probs=36.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc----CC---CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----YN---VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~---v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      ..+|+|+...    +||+.|+.....|..    ++   +.+..+|++ +++    +.+..+...+|.+  |-+|+.+
T Consensus        17 ~~~vvv~F~a----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~v~~~Pt~~~~~~g~~~   84 (102)
T cd02948          17 KGLTVVDVYQ----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYRGKCEPTFLFYKNGELV   84 (102)
T ss_pred             CCeEEEEEEC----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcCCCcCcEEEEEECCEEE
Confidence            3445555544    799999988877643    32   446667776 433    3344467788865  4577643

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=96.87  E-value=0.0023  Score=52.31  Aligned_cols=61  Identities=15%  Similarity=0.215  Sum_probs=47.2

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .||+|.++.-+|++.|++|+.+.|+... ..+++.+++-..++|.+..+|..|.....+.+.
T Consensus        72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~Y  132 (265)
T PLN02817         72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQA  132 (265)
T ss_pred             CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHH
Confidence            5999999999999999999987775432 123466777788999999999877666555554

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.86  E-value=0.0022  Score=45.30  Aligned_cols=36  Identities=14%  Similarity=0.308  Sum_probs=25.8

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVK  122 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~  122 (169)
                      |.|.-|++|+++|++.|++|+.+|+...+--+++|.
T Consensus         4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~   39 (110)
T PF03960_consen    4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELR   39 (110)
T ss_dssp             TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHH
Confidence            789999999999999999999999988654444443

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=96.83  E-value=0.0049  Score=47.31  Aligned_cols=79  Identities=15%  Similarity=0.104  Sum_probs=48.5

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee---ccH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG---GSD  144 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG---G~d  144 (169)
                      .|||+...    +||+.|+.+...|..+     .+.|..+|++..     .+....+-.++|.+  |-+|+.++   |++
T Consensus        85 ~VVV~Fya----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~~vG~~  155 (175)
T cd02987          85 TVVVHIYE----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGNFVRVT  155 (175)
T ss_pred             EEEEEEEC----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEEEechH
Confidence            56666553    7999999887766433     356777777643     45555567888976  66998775   333


Q ss_pred             HHH-HHHhcccHHHHHhcc
Q 030914          145 IIL-NMHQSGELKEKLKGI  162 (169)
Q Consensus       145 ~l~-~~~~~g~L~~~L~~~  162 (169)
                      +.. .-.....|+.+|..+
T Consensus       156 ~~~g~~f~~~~le~~L~~~  174 (175)
T cd02987         156 EDLGEDFDAEDLESFLVEY  174 (175)
T ss_pred             HhcCCCCCHHHHHHHHHhc
Confidence            321 122234466666543

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.003  Score=47.33  Aligned_cols=70  Identities=20%  Similarity=0.286  Sum_probs=48.7

Q ss_pred             cHHHHHHHHhhc-CC-eEEEeecCCCCCCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           62 SLKEVVEQDVKE-NP-VMLYMKGVPEFPQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        62 ~~~~~i~~~~~~-~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      +..+.-+.++++ .+ +|-|..     +||+.|+...-.|+++-      +++-.+|++++.++.+    ..+-..+|.+
T Consensus        49 s~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~----~Y~I~avPtv  119 (150)
T KOG0910|consen   49 SDSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE----DYEISAVPTV  119 (150)
T ss_pred             CHHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh----hcceeeeeEE
Confidence            445666666654 34 556776     79999999998887653      5566778888777544    3466788987


Q ss_pred             --EeCCeEe
Q 030914          134 --FIKGEFI  140 (169)
Q Consensus       134 --fi~g~~i  140 (169)
                        |-||+-+
T Consensus       120 lvfknGe~~  128 (150)
T KOG0910|consen  120 LVFKNGEKV  128 (150)
T ss_pred             EEEECCEEe
Confidence              6688644

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.77  E-value=0.00038  Score=50.97  Aligned_cols=69  Identities=19%  Similarity=0.176  Sum_probs=39.3

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHh----cC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY-NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ++..+.++...+.-.+++++-     +|||+|.+.+-+|.    .. ++++..+..+.++++-+.+.. .|.+.+|.+++
T Consensus        30 ~~~~~~l~~~~~~~~ilvi~e-----~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I~  103 (129)
T PF14595_consen   30 EEQIEKLKSIQKPYNILVITE-----TWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFIF  103 (129)
T ss_dssp             HHHHHHHHT--S-EEEEEE-------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEEE
T ss_pred             HHHHHHHHhcCCCcEEEEEEC-----CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEEE
Confidence            344566666666678999988     79999998776654    33 566666666555555443333 57889999865

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=96.76  E-value=0.008  Score=42.93  Aligned_cols=62  Identities=15%  Similarity=0.136  Sum_probs=41.9

Q ss_pred             CCeEEEeecCCCCC--CCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeecc
Q 030914           74 NPVMLYMKGVPEFP--QCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGS  143 (169)
Q Consensus        74 ~~Vvly~k~~~~~~--~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~  143 (169)
                      .++|++...    +  +||.|+.+.-+|.+.-      +.+-.+|++.+++    +....+-.++|++  |-||+.++..
T Consensus        28 ~~~v~~f~~----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~----la~~f~V~sIPTli~fkdGk~v~~~   99 (111)
T cd02965          28 GDLVLLLAG----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQA----LAARFGVLRTPALLFFRDGRYVGVL   99 (111)
T ss_pred             CCEEEEecC----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHH----HHHHcCCCcCCEEEEEECCEEEEEE
Confidence            454444443    4  5999999998875442      4466788887764    4455577788877  5599877654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=96.76  E-value=0.0075  Score=40.69  Aligned_cols=50  Identities=18%  Similarity=0.209  Sum_probs=33.2

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      +||+.|+++...|++.      .+.+-.+|+...+++    .+..+-.++|.+  |.+|+.+
T Consensus        24 ~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          24 PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEI----SEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHH----HHhcCCccccEEEEEECCEEE
Confidence            7999999998877642      355556666555543    344466788866  5577644

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=96.74  E-value=0.0061  Score=45.05  Aligned_cols=67  Identities=10%  Similarity=0.092  Sum_probs=40.5

Q ss_pred             HHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe---CC
Q 030914           68 EQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI---KG  137 (169)
Q Consensus        68 ~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi---~g  137 (169)
                      ++.+.. .+|+|+..+    +||+.|+.....|.+.      ++.+..+|++.+. . ..+.+..+...+|.+++   +|
T Consensus        14 ~~a~~~gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~-~~~~~~~~V~~iPt~v~~~~~G   87 (142)
T cd02950          14 EVALSNGKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-W-LPEIDRYRVDGIPHFVFLDREG   87 (142)
T ss_pred             HHHHhCCCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-c-HHHHHHcCCCCCCEEEEECCCC
Confidence            333443 456666554    7999999888776532      2556777776432 1 23334457788898754   46


Q ss_pred             eEe
Q 030914          138 EFI  140 (169)
Q Consensus       138 ~~i  140 (169)
                      +.+
T Consensus        88 ~~v   90 (142)
T cd02950          88 NEE   90 (142)
T ss_pred             CEE
Confidence            644

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=96.74  E-value=0.007  Score=41.12  Aligned_cols=65  Identities=17%  Similarity=0.266  Sum_probs=39.7

Q ss_pred             HHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--e
Q 030914           67 VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--I  135 (169)
Q Consensus        67 i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i  135 (169)
                      +++.+..++++|+...    +||+.|+.....+++.         .+.+-.+|.+.++.+    .+..+...+|.++  -
T Consensus        10 f~~~~~~~~~lv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~   81 (102)
T cd03005          10 FDHHIAEGNHFVKFFA----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL----CSEFQVRGYPTLLLFK   81 (102)
T ss_pred             HHHHhhcCCEEEEEEC----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh----HhhcCCCcCCEEEEEe
Confidence            4444445566655443    7999999876655322         355667777766543    3334678899864  3


Q ss_pred             CCeE
Q 030914          136 KGEF  139 (169)
Q Consensus       136 ~g~~  139 (169)
                      +|..
T Consensus        82 ~g~~   85 (102)
T cd03005          82 DGEK   85 (102)
T ss_pred             CCCe
Confidence            6653

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=96.72  E-value=0.006  Score=42.14  Aligned_cols=65  Identities=15%  Similarity=0.196  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhc----C---C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y---N--VPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~---~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      +++.+++..+...++|+...    +|||.|++....|++    +   +  +.+..+|+...+.+    .+..+-.++|.+
T Consensus         5 ~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~I~~~Pt~   76 (104)
T cd03000           5 LDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSI----ASEFGVRGYPTI   76 (104)
T ss_pred             chhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhH----HhhcCCccccEE
Confidence            44555555555666666554    799999977765532    2   3  44556677665543    344567889988


Q ss_pred             Ee
Q 030914          134 FI  135 (169)
Q Consensus       134 fi  135 (169)
                      ++
T Consensus        77 ~l   78 (104)
T cd03000          77 KL   78 (104)
T ss_pred             EE
Confidence            43

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=96.64  E-value=0.0091  Score=42.69  Aligned_cols=74  Identities=18%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             cHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHHH-HHHHHhcCCCCCcEE
Q 030914           62 SLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGA------YNVPISARNILEDPELK-SAVKAFSHWPTFPQI  133 (169)
Q Consensus        62 ~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~~-~~l~~~~g~~t~P~v  133 (169)
                      +.++.++....++ +|+|+..+    +||++|+.....+.+      ....|..++++.+++.. ..+. ..| ..+|.+
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~-~~g-~~vPt~   80 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHK----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFS-PDG-GYIPRI   80 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeC----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcc-cCC-CccceE
Confidence            3567777766554 46655443    799999999887765      34568888888765322 2221 111 248877


Q ss_pred             E-e--CCeEee
Q 030914          134 F-I--KGEFIG  141 (169)
Q Consensus       134 f-i--~g~~iG  141 (169)
                      + +  +|+.++
T Consensus        81 ~f~~~~Gk~~~   91 (117)
T cd02959          81 LFLDPSGDVHP   91 (117)
T ss_pred             EEECCCCCCch
Confidence            4 4  555443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=96.63  E-value=0.0079  Score=41.19  Aligned_cols=48  Identities=21%  Similarity=0.315  Sum_probs=33.1

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~  138 (169)
                      +||++|++....+++.      .+.+-.+|++.++.+    .+..+-..+|.+  |-+|+
T Consensus        28 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~g~   83 (101)
T cd03003          28 PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRML----CRSQGVNSYPSLYVFPSGM   83 (101)
T ss_pred             CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHH----HHHcCCCccCEEEEEcCCC
Confidence            7999999888876433      245667888877654    333466788988  44665

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=96.60  E-value=0.011  Score=41.91  Aligned_cols=31  Identities=26%  Similarity=0.594  Sum_probs=27.7

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++..
T Consensus         6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~   37 (111)
T cd03036           6 YPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPS   37 (111)
T ss_pred             CCCCHHHHHHHHHHHHcCCceEEecccCCccc
Confidence            48899999999999999999998 99887654

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=96.60  E-value=0.017  Score=41.95  Aligned_cols=74  Identities=14%  Similarity=0.170  Sum_probs=45.1

Q ss_pred             HHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH-HHhc------C--CCCeEEEEcCCCHHHHHHHHH----hcCCCCC
Q 030914           65 EVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR-VLGA------Y--NVPISARNILEDPELKSAVKA----FSHWPTF  130 (169)
Q Consensus        65 ~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~-~L~~------~--~v~~~~~di~~~~~~~~~l~~----~~g~~t~  130 (169)
                      +.++++.++++ |+|+..+    .||++|+...+ .+..      .  +.-+..+|++..+++.+.+.+    ..|...+
T Consensus         6 eal~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~   81 (124)
T cd02955           6 EAFEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW   81 (124)
T ss_pred             HHHHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence            34566666554 7777654    69999998864 3332      1  233455677776666553332    3467778


Q ss_pred             cEEEe---CCeEeec
Q 030914          131 PQIFI---KGEFIGG  142 (169)
Q Consensus       131 P~vfi---~g~~iGG  142 (169)
                      |.+.+   +|+.+-+
T Consensus        82 Pt~vfl~~~G~~~~~   96 (124)
T cd02955          82 PLNVFLTPDLKPFFG   96 (124)
T ss_pred             CEEEEECCCCCEEee
Confidence            88754   6777733

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=96.59  E-value=0.0079  Score=42.06  Aligned_cols=46  Identities=22%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           87 PQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      +|||+|++....|.+.       ++.+-.+|++.+.  .....+..+...+|.++
T Consensus        31 ~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~   83 (109)
T cd02993          31 PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL   83 (109)
T ss_pred             CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence            7999999988877442       3556667776521  12233345778899874

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>PRK15113 glutathione S-transferase; Provisional

Probab=96.56  E-value=0.013  Score=45.70  Aligned_cols=69  Identities=14%  Similarity=0.150  Sum_probs=51.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDII  146 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l  146 (169)
                      .++||....   +.|++|.++.-+|.+.||+|+.+.++-  .+...+++.+.+....+|.+..||..|--..-+
T Consensus         5 ~~~Ly~~~~---~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI   75 (214)
T PRK15113          5 AITLYSDAH---FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAI   75 (214)
T ss_pred             eEEEEeCCC---CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHH
Confidence            467887521   259999999999999999999887763  333446777888888999999988766544333

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=96.54  E-value=0.0068  Score=42.69  Aligned_cols=93  Identities=11%  Similarity=0.059  Sum_probs=58.0

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|+.++++.++|.++|++|.. |+..+|-+             .    +.++.++....                   
T Consensus         6 ~~~C~~crka~~~L~~~~i~~~~~di~~~p~s-------------~----~eL~~~l~~~g-------------------   49 (105)
T cd03035           6 IKNCDTVKKARKWLEARGVAYTFHDYRKDGLD-------------A----ATLERWLAKVG-------------------   49 (105)
T ss_pred             CCCCHHHHHHHHHHHHcCCCeEEEecccCCCC-------------H----HHHHHHHHHhC-------------------
Confidence            58999999999999999999998 99987543             2    33444433111                   


Q ss_pred             HHHHHhcCCCCeEEEEcC-----CCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           95 AVRVLGAYNVPISARNIL-----EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~-----~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +..+++..+-.|...++.     .+.++.+.|.+...--.-|.|..+++.+=|++
T Consensus        50 ~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~  104 (105)
T cd03035          50 WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFS  104 (105)
T ss_pred             hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeC
Confidence            234555555444443332     23444444444322334599988888877876

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=96.52  E-value=0.017  Score=38.30  Aligned_cols=62  Identities=15%  Similarity=0.230  Sum_probs=37.4

Q ss_pred             HHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhc----C----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           66 VVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGA----Y----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        66 ~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~----~----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+.+.+.+. +++|+..+    ++|+.|+++...+.+    .    ++.+..+|.+.+..    +.+..+-+.+|.+++
T Consensus         7 ~~~~~i~~~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~i~~~Pt~~~   77 (101)
T cd02961           7 NFDELVKDSKDVLVEFYA----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANND----LCSEYGVRGYPTIKL   77 (101)
T ss_pred             HHHHHHhCCCcEEEEEEC----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHH----HHHhCCCCCCCEEEE
Confidence            344445444 54444333    799999998887743    2    34455666655444    344456788998844

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PLN02378 glutathione S-transferase DHAR1

Probab=96.52  E-value=0.011  Score=46.22  Aligned_cols=62  Identities=19%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||+|.++.-+|.+.|++|+.+.|+... -.+++.+.+...++|.+-.+|..|.-...+...
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~Y   79 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSD-KPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGI   79 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCccc-CCHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            56999999999999999999877775422 123567788889999999888776655444443

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=96.48  E-value=0.022  Score=38.69  Aligned_cols=52  Identities=17%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ++|+...    +||++|++....|.+    .  .+.+-.+|++.++++.    +..+...+|.+++
T Consensus        21 vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~i~~~P~~~~   78 (103)
T cd03001          21 WLVEFYA----PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLA----QQYGVRGFPTIKV   78 (103)
T ss_pred             EEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHH----HHCCCCccCEEEE
Confidence            5544443    799999998776644    2  3556777887666543    3346788997743

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=96.44  E-value=0.0052  Score=43.88  Aligned_cols=49  Identities=20%  Similarity=0.166  Sum_probs=32.8

Q ss_pred             CCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914           87 PQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~  138 (169)
                      |||++|+.+...+++..      +.+-.+|++.++.+   ..+..+..++|.+  |.+|+
T Consensus        39 ~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~   95 (113)
T cd03006          39 PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR   95 (113)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence            89999999888775442      56677888877654   2223345666765  66765

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=96.42  E-value=0.014  Score=46.76  Aligned_cols=28  Identities=11%  Similarity=0.440  Sum_probs=20.7

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC---CCCeEE
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY---NVPISA  108 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~---~v~~~~  108 (169)
                      |++|+-     |.||||++.-+.+.++   +|.+..
T Consensus       111 I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~  141 (232)
T PRK10877        111 ITVFTD-----ITCGYCHKLHEQMKDYNALGITVRY  141 (232)
T ss_pred             EEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEE
Confidence            667777     8999999998877664   454443

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=96.38  E-value=0.02  Score=39.62  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=30.2

Q ss_pred             CCCccHHHHHHHHhcC-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGAY-----NVPISARNIL-EDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-----~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||++|+.....|++.     ++.+-.+|.+ .++.    +.+..+...+|.+++
T Consensus        28 ~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~----l~~~~~V~~~PT~~l   78 (100)
T cd02999          28 SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPS----LLSRYGVVGFPTILL   78 (100)
T ss_pred             CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHH----HHHhcCCeecCEEEE
Confidence            7999999888777543     3556666665 4443    444456788897743

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=96.37  E-value=0.016  Score=40.19  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=35.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhc-------C--CCCeEEEEcCCCHH----------------HHHHHHHhcCCCCC
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGA-------Y--NVPISARNILEDPE----------------LKSAVKAFSHWPTF  130 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~-------~--~v~~~~~di~~~~~----------------~~~~l~~~~g~~t~  130 (169)
                      |++|+.     |+||+|++..+.+.+       .  ++.+..+++..+..                ...++....|...+
T Consensus         9 v~~F~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt   83 (112)
T PF13098_consen    9 VVVFTD-----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT   83 (112)
T ss_dssp             EEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence            555655     899999988765542       1  23445556654332                12345566688899


Q ss_pred             cEEEe-C--Ce---EeeccH
Q 030914          131 PQIFI-K--GE---FIGGSD  144 (169)
Q Consensus       131 P~vfi-~--g~---~iGG~d  144 (169)
                      |.+++ |  |+   .+-|+-
T Consensus        84 Pt~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   84 PTIVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             SEEEECTTTSCEEEEEESS-
T ss_pred             CEEEEEcCCCCEEEEecCCC
Confidence            99866 3  66   344553

...

>PLN02473 glutathione S-transferase

Probab=96.37  E-value=0.018  Score=44.63  Aligned_cols=69  Identities=10%  Similarity=-0.054  Sum_probs=51.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.|++|.++.-+|.+.|++|+.+.++-  .+....++.+.+...++|.+..+|..|....-+.+.
T Consensus         3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence            457765     679999999999999999999876643  223334455667778999999999888776665553

>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]

Probab=96.28  E-value=0.013  Score=47.75  Aligned_cols=73  Identities=30%  Similarity=0.420  Sum_probs=54.3

Q ss_pred             HHHhhcCCeEEEe-ecCCCCCC-CccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           68 EQDVKENPVMLYM-KGVPEFPQ-CGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        68 ~~~~~~~~Vvly~-k~~~~~~~-C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      ++..+...|.||. +-++..|. .|||-++--+|+..+|+|+.++-.        ++.+|-..++|.|=.||++|-+.|.
T Consensus        38 k~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~--------~~~rSr~G~lPFIELNGe~iaDS~~  109 (281)
T KOG4244|consen   38 KTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS--------LKRRSRNGTLPFIELNGEHIADSDL  109 (281)
T ss_pred             hhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc--------ceeeccCCCcceEEeCCeeccccHH
Confidence            3445566677774 11222222 569999999999999999988774        5566777899999999999999886


Q ss_pred             HHH
Q 030914          146 ILN  148 (169)
Q Consensus       146 l~~  148 (169)
                      +..
T Consensus       110 I~~  112 (281)
T KOG4244|consen  110 IED  112 (281)
T ss_pred             HHH
Confidence            554

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=96.27  E-value=0.012  Score=39.65  Aligned_cols=51  Identities=14%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +++|..     ++|+.|+.....|...        ++.+..+|++.++.+.    +..+...+|.+++
T Consensus        17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~----~~~~i~~~P~~~~   75 (102)
T TIGR01126        17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLA----SRFGVSGFPTIKF   75 (102)
T ss_pred             EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHH----HhCCCCcCCEEEE
Confidence            455565     7999999866655331        2556667776665543    3446788998844

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=96.23  E-value=0.014  Score=40.07  Aligned_cols=47  Identities=17%  Similarity=0.208  Sum_probs=32.2

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCC
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKG  137 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g  137 (169)
                      +||+.|+.....+++.      ++.+-.+|++.++++    .+..+...+|.++  -+|
T Consensus        29 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~i~~~Pt~~~~~~g   83 (104)
T cd03004          29 PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESL----CQQANIRAYPTIRLYPGN   83 (104)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHH----HHHcCCCcccEEEEEcCC
Confidence            7999999887766432      356778888776654    3334678888874  365

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=96.21  E-value=0.021  Score=41.20  Aligned_cols=50  Identities=12%  Similarity=0.111  Sum_probs=30.9

Q ss_pred             CCCCccHHHHHHHH----hcC--CCCeEEEEcCCCHHHH---HHHHHhcCCC-CCcEEEe
Q 030914           86 FPQCGFSSLAVRVL----GAY--NVPISARNILEDPELK---SAVKAFSHWP-TFPQIFI  135 (169)
Q Consensus        86 ~~~C~~c~~a~~~L----~~~--~v~~~~~di~~~~~~~---~~l~~~~g~~-t~P~vfi  135 (169)
                      .+|||.|+.+...|    +++  ++.+-.+|++..+..+   ..+....+-. .+|.+.+
T Consensus        37 ~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~   96 (119)
T cd02952          37 QSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR   96 (119)
T ss_pred             CCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence            35999999776655    443  3678888887644211   2333333444 8898855

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.025  Score=45.43  Aligned_cols=70  Identities=16%  Similarity=-0.011  Sum_probs=54.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..|.||+.     -.|||..|+.-.|+..||+|+.++++-.. --+.|.+.+ -...+|.+-.||+.|+-.-.+.+.
T Consensus         8 ~~vrL~~~-----w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveY   78 (231)
T KOG0406|consen    8 GTVKLLGM-----WFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEY   78 (231)
T ss_pred             CeEEEEEe-----ecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHH
Confidence            56889977     46999999999999999999998886432 223455665 578999999999998765555444

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=96.05  E-value=0.025  Score=38.33  Aligned_cols=45  Identities=20%  Similarity=0.325  Sum_probs=29.3

Q ss_pred             CCCccHHHHHHHHhc----C----CCCeEEEEcCC-CHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGA----Y----NVPISARNILE-DPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~----~v~~~~~di~~-~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||+.|++....+.+    .    ++.+-.+|... ++.+.+.    .+..++|.+++
T Consensus        28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~----~~i~~~P~~~~   81 (105)
T cd02998          28 PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKK----YGVSGFPTLKF   81 (105)
T ss_pred             CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHh----CCCCCcCEEEE
Confidence            799999988776643    2    24455667666 4444333    35678998855

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=96.03  E-value=0.054  Score=39.10  Aligned_cols=69  Identities=19%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             HHHHHHhhcC--CeEEEeecCCCCCCCc--cHH----------HHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCC
Q 030914           65 EVVEQDVKEN--PVMLYMKGVPEFPQCG--FSS----------LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTF  130 (169)
Q Consensus        65 ~~i~~~~~~~--~Vvly~k~~~~~~~C~--~c~----------~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~  130 (169)
                      +-+++.+..+  .|++|...    +||+  +|+          .+.++|+..++.+-.+|++.++++.+    ..|-.++
T Consensus        17 ~nF~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~----~~~I~~i   88 (120)
T cd03065          17 KNYKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAK----KLGLDEE   88 (120)
T ss_pred             hhHHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHH----HcCCccc
Confidence            4455555544  57777663    4665  497          23446667789999999998877544    4456777


Q ss_pred             cEE--EeCCeEee
Q 030914          131 PQI--FIKGEFIG  141 (169)
Q Consensus       131 P~v--fi~g~~iG  141 (169)
                      |.+  |-||+.+.
T Consensus        89 PTl~lfk~G~~v~  101 (120)
T cd03065          89 DSIYVFKDDEVIE  101 (120)
T ss_pred             cEEEEEECCEEEE
Confidence            776  77998664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=95.99  E-value=0.021  Score=43.99  Aligned_cols=62  Identities=15%  Similarity=0.046  Sum_probs=47.9

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCC-C--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILE-D--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~-~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      +.|++|.+++-+|...||+|+.+.++. .  .....++.+.+...++|.+..+|..+.....+..
T Consensus         6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~   70 (210)
T TIGR01262         6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIE   70 (210)
T ss_pred             CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHH
Confidence            468999999999999999999887763 1  2223457777778899999999987776555544

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=95.97  E-value=0.022  Score=41.63  Aligned_cols=96  Identities=14%  Similarity=0.120  Sum_probs=57.5

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|++++++.++|.++|++|.. |+..++..+                 +.+.+++....     .       +     
T Consensus         7 ~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~-----------------~eL~~~l~~~~-----~-------g-----   52 (131)
T PRK01655          7 SPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTI-----------------DEIKQILRMTE-----D-------G-----   52 (131)
T ss_pred             CCCChHHHHHHHHHHHcCCCcEEeeccCChhhH-----------------HHHHHHHHHhc-----C-------C-----
Confidence            48999999999999999999988 998876542                 33333333110     0       0     


Q ss_pred             HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      +..+++..+-.|...++..    ..++.+.|.+...--.-|.|..++..+-|+++
T Consensus        53 ~~~lin~~~~~~k~l~~~~~~ls~~e~i~ll~~~p~LikRPIi~~~~~~~vG~~~  107 (131)
T PRK01655         53 TDEIISTRSKVFQKLNVDVESLSLQDLIKLISDNPGLLRRPIIIDEKRLQVGYNE  107 (131)
T ss_pred             HHHHHhcCcHHHHhCCCCcccCCHHHHHHHHHhCcceEeCCEEEECCEEEecCCH
Confidence            3344444444443332221    23444444443333345999999988888764

>PF13728 TraF: F plasmid transfer operon protein

Probab=95.87  E-value=0.029  Score=44.48  Aligned_cols=69  Identities=10%  Similarity=0.265  Sum_probs=49.4

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCC-------HHHHHHHHHhcCCCCC
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILED-------PELKSAVKAFSHWPTF  130 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~-------~~~~~~l~~~~g~~t~  130 (169)
                      .....|+++.+...+++|.+|     .|++|.....+|    +++|+++..++++..       ...-..+.+..|-.++
T Consensus       110 ~~~~~l~~la~~~gL~~F~~~-----~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~  184 (215)
T PF13728_consen  110 KRDKALKQLAQKYGLFFFYRS-----DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT  184 (215)
T ss_pred             HHHHHHHHHhhCeEEEEEEcC-----CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC
Confidence            345677888888889999995     699998766655    577899888888741       0011234444577899


Q ss_pred             cEEEe
Q 030914          131 PQIFI  135 (169)
Q Consensus       131 P~vfi  135 (169)
                      |.+|+
T Consensus       185 Pal~L  189 (215)
T PF13728_consen  185 PALFL  189 (215)
T ss_pred             CEEEE
Confidence            99987

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=95.79  E-value=0.058  Score=41.69  Aligned_cols=31  Identities=16%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc--CCCCeEEE
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA--YNVPISAR  109 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~--~~v~~~~~  109 (169)
                      ..|++|+.     |.||||+++.+.+.+  .++.+..+
T Consensus        79 ~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~  111 (197)
T cd03020          79 RVVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIF  111 (197)
T ss_pred             EEEEEEEC-----CCCccHHHHHHHHhhccCceEEEEE
Confidence            34667777     899999999998873  34544444

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=95.75  E-value=0.027  Score=38.73  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||++|++....|.+.      .+.+-.+|++.++.  ..+....+..++|.+++
T Consensus        28 ~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~--~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002          28 PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN--KPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             CCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc--HHHHHHcCCCcCCEEEE
Confidence            7999999887666433      24555667765211  23444456788998855

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.089  Score=37.13  Aligned_cols=71  Identities=17%  Similarity=0.227  Sum_probs=43.9

Q ss_pred             HHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCC
Q 030914           66 VVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKG  137 (169)
Q Consensus        66 ~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g  137 (169)
                      .....-.. ..||++..+    .||+.|+.+.-++.++-     +.|-.+|+++   . ..+..-.+-..+|.+  |-+|
T Consensus        13 ~~~~~~~~~kliVvdF~a----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~-~~~~~~~~V~~~PTf~f~k~g   84 (106)
T KOG0907|consen   13 VLSAAEAGDKLVVVDFYA----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---L-EEVAKEFNVKAMPTFVFYKGG   84 (106)
T ss_pred             HHHHhhCCCCeEEEEEEC----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---C-HhHHHhcCceEeeEEEEEECC
Confidence            33333333 445665544    69999999998887664     4456778876   2 233344467888887  3466


Q ss_pred             e----EeeccH
Q 030914          138 E----FIGGSD  144 (169)
Q Consensus       138 ~----~iGG~d  144 (169)
                      +    ++|+.-
T Consensus        85 ~~~~~~vGa~~   95 (106)
T KOG0907|consen   85 EEVDEVVGANK   95 (106)
T ss_pred             EEEEEEecCCH
Confidence            4    555543

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=95.67  E-value=0.051  Score=42.92  Aligned_cols=60  Identities=20%  Similarity=0.258  Sum_probs=49.0

Q ss_pred             CCCccHHHHHHHHhcCCCCeE--EEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPIS--ARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~--~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      -.||||.++...|...+++|.  .+|+..-++   .++..++...+|.|-.||+.+-..+.+.+.
T Consensus        19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~   80 (221)
T KOG1422|consen   19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISPGGKPPVLKFDEKWVTDSDKIEEF   80 (221)
T ss_pred             CCChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCCCCCCCeEEeCCceeccHHHHHHH
Confidence            359999999999999999875  556655554   477788889999999999999888776655

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=95.64  E-value=0.063  Score=41.83  Aligned_cols=69  Identities=12%  Similarity=0.073  Sum_probs=44.1

Q ss_pred             cHHHHHHHHhhcC---CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           62 SLKEVVEQDVKEN---PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        62 ~~~~~i~~~~~~~---~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      +..++..++....   .|||+...    +||+.|+.+...|+.+     .+.|..+|++..       ....+-..+|.+
T Consensus        88 s~~~f~~eV~~as~~~~VVV~Fya----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTl  156 (192)
T cd02988          88 SKPDYVREVTEASKDTWVVVHLYK----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTI  156 (192)
T ss_pred             CHHHHHHHHHhcCCCCEEEEEEEC----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEE
Confidence            3456666666543   35554432    7999999988877544     366777777421       234467889987


Q ss_pred             --EeCCeEee
Q 030914          134 --FIKGEFIG  141 (169)
Q Consensus       134 --fi~g~~iG  141 (169)
                        |-||+.|+
T Consensus       157 liyk~G~~v~  166 (192)
T cd02988         157 LVYRNGDIVK  166 (192)
T ss_pred             EEEECCEEEE
Confidence              55887654

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=95.62  E-value=0.026  Score=40.49  Aligned_cols=69  Identities=13%  Similarity=0.217  Sum_probs=43.1

Q ss_pred             HHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC
Q 030914           64 KEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAVKAFSHWPTFPQIFIK  136 (169)
Q Consensus        64 ~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~  136 (169)
                      .+.|.+. ....||| |+.     .|||.|+.+-.+|.+.-      +.+-.+|+++.+++.+.+. ...-||+= +|-+
T Consensus         6 d~~i~~~-~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~-I~amPtfv-ffkn   77 (114)
T cd02986           6 DQAIKST-AEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD-ISYIPSTI-FFFN   77 (114)
T ss_pred             HHHHHhc-CCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC-ceeCcEEE-EEEC
Confidence            3444433 3344444 555     69999999988886553      5567789988887655442 12234433 5778


Q ss_pred             CeEe
Q 030914          137 GEFI  140 (169)
Q Consensus       137 g~~i  140 (169)
                      |+|+
T Consensus        78 gkh~   81 (114)
T cd02986          78 GQHM   81 (114)
T ss_pred             CcEE
Confidence            9887

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=95.62  E-value=0.053  Score=39.49  Aligned_cols=94  Identities=11%  Similarity=0.112  Sum_probs=57.7

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|..++++.++|.++|++|.. |++.++-+             .    +.|+.++....                   
T Consensus         8 ~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t-------------~----~eL~~~l~~~g-------------------   51 (126)
T TIGR01616         8 KPGCANNARQKAALKASGHDVEVQDILKEPWH-------------A----DTLRPYFGNKP-------------------   51 (126)
T ss_pred             CCCCHHHHHHHHHHHHCCCCcEEEeccCCCcC-------------H----HHHHHHHHHcC-------------------
Confidence            48899999999999999999988 99887543             2    33444433211                   


Q ss_pred             HHHHHhcCCCCeEEEEcC----CCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           95 AVRVLGAYNVPISARNIL----EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~----~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      +..+++..+-.|...+..    ...++.+.|.+...--.-|.|..+|..+-|+++
T Consensus        52 ~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~  106 (126)
T TIGR01616        52 VGSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR  106 (126)
T ss_pred             HHHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence            234444444444332222    123444444443323345999999998889873

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=95.59  E-value=0.056  Score=36.63  Aligned_cols=50  Identities=20%  Similarity=0.322  Sum_probs=30.5

Q ss_pred             CCCccHHHHHHHHh----c----CCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           87 PQCGFSSLAVRVLG----A----YNVPISARNILE--DPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~----~----~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      +||+.|+.....+.    .    ..+.+..+|+..  ++.    +....|-..+|.+  |-+|+.+
T Consensus        27 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~   88 (104)
T cd02997          27 PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDA----LKEEYNVKGFPTFKYFENGKFV   88 (104)
T ss_pred             CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHH----HHHhCCCccccEEEEEeCCCee
Confidence            79999998865442    2    224566667765  433    3344466788877  4456543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=95.47  E-value=0.016  Score=41.30  Aligned_cols=96  Identities=16%  Similarity=0.112  Sum_probs=56.8

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|++++++.++|.++|++|.. |+..++.++                 +.+.+++..-.     .            .
T Consensus         7 ~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~-----------------~el~~~~~~~~-----~------------~   52 (115)
T cd03032           7 SPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTK-----------------EELKEILSLTE-----N------------G   52 (115)
T ss_pred             CCCCHHHHHHHHHHHHCCCceEEEecCCCcchH-----------------HHHHHHHHHhc-----C------------C
Confidence            48899999999999999999988 988875442                 23333333110     0            0


Q ss_pred             HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      +..+++..+-.|...++..    +.++.+.|.+...--.-|.|..+++.+=|+++
T Consensus        53 ~~~l~n~~~~~~k~l~~~~~~ls~~e~i~~l~~~p~LikRPii~~~~~~~vG~~~  107 (115)
T cd03032          53 VEDIISTRSKAFKNLNIDIDELSLSELIRLISEHPSLLRRPIIIDEKRLQIGYNE  107 (115)
T ss_pred             HHHHHhcCcHHHHHcCCCcccCCHHHHHHHHHhChhheeCCEEEeCCEEEeCCCH
Confidence            3344444444443333221    23344444443333345999988888877764

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.46  E-value=0.0055  Score=42.65  Aligned_cols=73  Identities=11%  Similarity=0.178  Sum_probs=47.3

Q ss_pred             hhhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHh--hcCCeEEEee
Q 030914            5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDV--KENPVMLYMK   81 (169)
Q Consensus         5 ~~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~--~~~~Vvly~k   81 (169)
                      -+++|.|     |.|+|+.++.++|.++|++|.. |+..+++..              +..+.+.+..  ..-|+ ||..
T Consensus         9 ~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~--------------~~~~~l~~~tg~~tvP~-Vfi~   68 (99)
T TIGR02189         9 AVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGK--------------DIENALSRLGCSPAVPA-VFVG   68 (99)
T ss_pred             CEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHH--------------HHHHHHHHhcCCCCcCe-EEEC
Confidence            3567777     8999999999999999999988 888765421              1223333322  12344 4666


Q ss_pred             cCCCCCCCccHHHHHHHHhc
Q 030914           82 GVPEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        82 ~~~~~~~C~~c~~a~~~L~~  101 (169)
                      |    ..-+-|..+.++.++
T Consensus        69 g----~~iGG~ddl~~l~~~   84 (99)
T TIGR02189        69 G----KLVGGLENVMALHIS   84 (99)
T ss_pred             C----EEEcCHHHHHHHHHc
Confidence            5    345667776666443

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=95.34  E-value=0.082  Score=34.94  Aligned_cols=34  Identities=21%  Similarity=0.298  Sum_probs=23.7

Q ss_pred             cHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHH
Q 030914           62 SLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVL   99 (169)
Q Consensus        62 ~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L   99 (169)
                      ++++.+.+..+++ +|+|+..+    +||+.|+...+.+
T Consensus         5 d~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~   39 (82)
T PF13899_consen    5 DYEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREV   39 (82)
T ss_dssp             SHHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHH
Confidence            4566666666554 46666554    7999999888755

...

>TIGR02740 TraF-like TraF-like protein

Probab=95.27  E-value=0.064  Score=43.97  Aligned_cols=65  Identities=15%  Similarity=0.362  Sum_probs=40.4

Q ss_pred             HHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCHH-------HHHHHHHhcCCCCCcEEE
Q 030914           66 VVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDPE-------LKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        66 ~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~-------~~~~l~~~~g~~t~P~vf  134 (169)
                      .++++.....++.|..     +||++|+.....|    +++|+.+..++++.+..       .-..+.+..|-..+|.+|
T Consensus       160 ~l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~  234 (271)
T TIGR02740       160 VMKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVF  234 (271)
T ss_pred             HHHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEE
Confidence            3444444444444555     5999999877665    45677777778765321       012244455788999996


Q ss_pred             e
Q 030914          135 I  135 (169)
Q Consensus       135 i  135 (169)
                      +
T Consensus       235 L  235 (271)
T TIGR02740       235 L  235 (271)
T ss_pred             E
Confidence            6

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=95.23  E-value=0.13  Score=34.04  Aligned_cols=57  Identities=16%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      +..++|.++.-+|+..|++|+.++....+.       .+....+|.+-+||+.|+...-+..+.
T Consensus        15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL   71 (74)
T cd03079          15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV   71 (74)
T ss_pred             CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence            346789999999999999999886532111       222368999999999999887666543

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=95.19  E-value=0.081  Score=37.40  Aligned_cols=55  Identities=11%  Similarity=0.125  Sum_probs=32.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCC---------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYN---------VPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~---------v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .|+|+..+    +||+.|+.....+++..         +.+-.+|.+.+.  -..+.+..+...+|++++
T Consensus        21 ~vvV~f~a----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          21 AWLVEFYA----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             eEEEEEEC----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence            45554443    79999998877664321         334445543322  123444456788998855

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=95.16  E-value=0.23  Score=32.62  Aligned_cols=66  Identities=21%  Similarity=0.178  Sum_probs=44.0

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH--hcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA--FSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~--~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .+|..     +..+.|.++.-+|.+.|++|+.+.++..++..+ ++.  .....++|.+.+||..+....-+..
T Consensus         3 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~   70 (79)
T cd03077           3 VLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILN   70 (79)
T ss_pred             EEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHH
Confidence            45655     456778899999999999999888765332211 211  1225699999999877765444433

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=95.14  E-value=0.03  Score=38.96  Aligned_cols=31  Identities=29%  Similarity=0.454  Sum_probs=27.1

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++..
T Consensus         6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~   37 (105)
T cd02977           6 NPNCSTSRKALAWLEEHGIEYEFIDYLKEPPT   37 (105)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcEEEeeccCCCC
Confidence            48899999999999999999998 98877544

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=95.13  E-value=0.057  Score=40.19  Aligned_cols=35  Identities=17%  Similarity=0.074  Sum_probs=26.9

Q ss_pred             CCCccHHHHHHHHhcCC------CCeEEEEcCCCHHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYN------VPISARNILEDPELKSAV  121 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~------v~~~~~di~~~~~~~~~l  121 (169)
                      +||+.|+.+-.+|++.-      +.+-.+||++.+++.+.+
T Consensus        33 ~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y   73 (142)
T PLN00410         33 DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMY   73 (142)
T ss_pred             CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHc
Confidence            69999999988886543      445788999888876655

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=95.12  E-value=0.089  Score=37.84  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=60.3

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|+.|+.+..+|.++|++|.. |++.++-++                 +.+.++++.               ++.+  
T Consensus         8 ~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~-----------------~eL~~~l~~---------------~g~~--   53 (117)
T COG1393           8 NPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSR-----------------EELKKILSK---------------LGDG--   53 (117)
T ss_pred             CCCChHHHHHHHHHHHcCCCcEEEEeecCCCCH-----------------HHHHHHHHH---------------cCcc--
Confidence            58999999999999999999988 999876442                 444444441               2222  


Q ss_pred             HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCe-Eee
Q 030914           95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGE-FIG  141 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~-~iG  141 (169)
                      +..++...+-.|...+++.    +++..++|.+-..----|.|+-+|. .||
T Consensus        54 ~~~li~t~~~~~r~L~~~~~~~~~~~~~~~i~~~~~LikRPivv~~~~~~iG  105 (117)
T COG1393          54 VEELINTRGTTYRELNLDKEDLSDEELIEALLENPSLIKRPIVVDNKKLRVG  105 (117)
T ss_pred             HHHHHHhccchHHHcCCcccccChHHHHHHHHhChhhccCCeEEeCCceEec
Confidence            6677778877777766442    3344444433222234599988884 445

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=95.12  E-value=0.076  Score=41.13  Aligned_cols=55  Identities=16%  Similarity=0.320  Sum_probs=36.6

Q ss_pred             eEEEeecCCCCCCCccHHHH----HHHHhcCCCCeEEEEcCCCH-----HH----HHHHHHhcC--CCCCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLA----VRVLGAYNVPISARNILEDP-----EL----KSAVKAFSH--WPTFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a----~~~L~~~~v~~~~~di~~~~-----~~----~~~l~~~~g--~~t~P~vfi  135 (169)
                      ++.|..     .|||+|++.    +++-+++|+.+.-+.++.+.     .+    ...+.+..|  ...+|..|+
T Consensus        73 lV~Fwa-----swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL  142 (181)
T PRK13728         73 VVLFMQ-----GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL  142 (181)
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence            888888     489999987    55666778887777776431     11    122333444  268999987

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=95.11  E-value=0.065  Score=35.24  Aligned_cols=31  Identities=19%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEc
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNI  111 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di  111 (169)
                      |.+|..     +.||+|..+...|.+.      ++.+..+.+
T Consensus         1 i~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~   37 (98)
T cd02972           1 IVEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPF   37 (98)
T ss_pred             CeEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence            456766     7899999998888664      355555544

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=95.07  E-value=0.089  Score=40.74  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeCCe-EeeccHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAFSHWPTFPQIFIKGE-FIGGSDIILN  148 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~g~-~iGG~d~l~~  148 (169)
                      .+|..     +.+|+|.++.-+|.++|++|+.+.|+... .....+...+...++|.+..+|- .+-....+.+
T Consensus         2 ~L~~~-----~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~   70 (211)
T COG0625           2 KLYGS-----PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILE   70 (211)
T ss_pred             eeecC-----CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHH
Confidence            35655     56799999999999999999998887664 45567888888899999998874 4544443333

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.05  E-value=0.031  Score=43.25  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeec-cHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGG-SDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG-~d~l~~~  149 (169)
                      +.||||.+|+-++--.+++++.+-++.|.+.  -=..+.|...+|.+.- +|++.+- .|++.-.
T Consensus         7 dHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~   69 (215)
T COG2999           7 DHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQKEDGRAMPESLDIVHYV   69 (215)
T ss_pred             ccChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEccccccchhhhHHHHHH
Confidence            6899999999999999999988777655432  1124568999999865 6788875 5655543

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=95.00  E-value=0.13  Score=46.58  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHH-H------hc-CCCCeEEEEcCCCHHHHHHHHHhcCCCCCc
Q 030914           61 LSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRV-L------GA-YNVPISARNILEDPELKSAVKAFSHWPTFP  131 (169)
Q Consensus        61 ~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~-L------~~-~~v~~~~~di~~~~~~~~~l~~~~g~~t~P  131 (169)
                      ++.++.+++...+ ++|+|+...    +||+.|+..... +      +. .++.+..+|++.+.....++.+..+...+|
T Consensus       461 ~~l~~~l~~a~~~gK~VlVdF~A----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~P  536 (571)
T PRK00293        461 AELDQALAEAKGKGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLP  536 (571)
T ss_pred             HHHHHHHHHHHhcCCcEEEEEEC----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence            4566667665543 456665544    799999987553 2      11 245566788876544334455556788899


Q ss_pred             EEEe
Q 030914          132 QIFI  135 (169)
Q Consensus       132 ~vfi  135 (169)
                      .+++
T Consensus       537 t~~~  540 (571)
T PRK00293        537 TILF  540 (571)
T ss_pred             EEEE
Confidence            8855

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=94.86  E-value=0.15  Score=36.25  Aligned_cols=96  Identities=17%  Similarity=0.126  Sum_probs=57.5

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|..|+++.++|.++|+.|.. |+..++-+             .    +.+.+++....+     +           .
T Consensus         6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t-------------~----~el~~~l~~~g~-----~-----------~   52 (114)
T TIGR00014         6 NPRCSKSRNTLALLEDKGIEPEVVKYLKNPPT-------------K----SELEAIFAKLGL-----T-----------V   52 (114)
T ss_pred             CCCCHHHHHHHHHHHHCCCCeEEEeccCCCcC-------------H----HHHHHHHHHcCC-----c-----------h
Confidence            58999999999999999999988 88876432             2    334444432111     0           0


Q ss_pred             HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +..+++..+-.|....+..    ..++.+.|.+...--.-|.|..+++.+=|++
T Consensus        53 ~~~lin~~~~~~~~l~~~~~~ls~~e~i~~l~~~P~LikRPIi~~~~~~~vG~~  106 (114)
T TIGR00014        53 AREMIRTKEALYKELGLSDPNLSDQELLDAMVAHPILLERPIVVAGDGARIGRP  106 (114)
T ss_pred             HHHHHhcCCcHHHHcCCCccCCCHHHHHHHHHHCcCcccCCeEEECCEEEEcCC
Confidence            1345555555554443322    2334344433322334599998888877875

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=94.78  E-value=0.11  Score=36.95  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|.-|+++.++|.++|++|.. |++.++-+
T Consensus         7 ~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s   38 (113)
T cd03033           7 KPGCANNARQKALLEAAGHEVEVRDLLTEPWT   38 (113)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcEEeehhcCCCC
Confidence            58899999999999999999988 99987543

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=94.59  E-value=0.19  Score=35.62  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=58.3

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|+.|+++.++|.++|++|.. |+..++-+             .    +.+..++....     .            .
T Consensus         6 ~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t-------------~----~el~~~l~~~~-----~------------~   51 (112)
T cd03034           6 NPRCSKSRNALALLEEAGIEPEIVEYLKTPPT-------------A----AELRELLAKLG-----I------------S   51 (112)
T ss_pred             CCCCHHHHHHHHHHHHCCCCeEEEecccCCcC-------------H----HHHHHHHHHcC-----C------------C
Confidence            58999999999999999999988 88887533             2    33333332111     1            1


Q ss_pred             HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +..+++..+-.|...++..    ..++.+.|.+...--.-|.|+-+++.+=|+.
T Consensus        52 ~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~  105 (112)
T cd03034          52 PRDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP  105 (112)
T ss_pred             HHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence            4456666655555443331    2334444444333334599998888777763

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=94.58  E-value=0.079  Score=42.34  Aligned_cols=50  Identities=14%  Similarity=0.224  Sum_probs=33.7

Q ss_pred             CCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEe
Q 030914           87 PQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~i  140 (169)
                      |||++|++....+++.    +  +.+..+|++.++++    .+..+-..+|.++  -+|+.+
T Consensus        62 pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l----~~~~~I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         62 PWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNL----AKRFAIKGYPTLLLFDKGKMY  119 (224)
T ss_pred             CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHH----HHHcCCCcCCEEEEEECCEEE
Confidence            8999999988876443    2  45566677666543    4444677888774  477755

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=94.49  E-value=0.21  Score=37.08  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=53.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeecc---HHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS---DIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~---d~l~~~  149 (169)
                      ...+++|-.     |.|+=|..-.+.|+..|.++..+..+.-..+++.+--.-...+==+..|||.+|=|+   +.+..+
T Consensus        25 ~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~l   99 (149)
T COG3019          25 ATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARL   99 (149)
T ss_pred             eeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHH
Confidence            345777766     899999999999999998887777754444444332111223455789999999985   667776


Q ss_pred             Hhccc
Q 030914          150 HQSGE  154 (169)
Q Consensus       150 ~~~g~  154 (169)
                      .+++.
T Consensus       100 l~~~p  104 (149)
T COG3019         100 LAEKP  104 (149)
T ss_pred             HhCCC
Confidence            66554

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=94.41  E-value=0.15  Score=44.94  Aligned_cols=50  Identities=22%  Similarity=0.248  Sum_probs=31.9

Q ss_pred             CCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914           87 PQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~  138 (169)
                      |||++|+.....|++.       ++.+-.+|++.++.  +......+..++|.+  |-+|.
T Consensus       381 pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g~  439 (463)
T TIGR00424       381 PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKHS  439 (463)
T ss_pred             CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECCC
Confidence            8999999888776433       36677788876532  112233456678877  44553

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=94.41  E-value=0.097  Score=35.34  Aligned_cols=53  Identities=21%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ..++|+..+    +||++|+.....+.+.        .+.+..+|.+.++     +....+..++|.+++
T Consensus        19 ~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~~~~Pt~~~   79 (104)
T cd02995          19 KDVLVEFYA----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-----VPSEFVVDGFPTILF   79 (104)
T ss_pred             CcEEEEEEC----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-----hhhhccCCCCCEEEE
Confidence            345544433    7999999887766432        2445666766542     222234478898754

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=94.37  E-value=0.13  Score=37.61  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=27.4

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|..++++.++|.++|++|.. |+..++.+
T Consensus         7 ~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s   38 (132)
T PRK13344          7 ISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLT   38 (132)
T ss_pred             CCCCHHHHHHHHHHHHcCCCeEEEECCCCCCC
Confidence            58899999999999999999988 99987654

>PRK12559 transcriptional regulator Spx; Provisional

Probab=94.35  E-value=0.11  Score=38.10  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=27.3

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|.+++++.++|.++|++|.. |+..++.+
T Consensus         7 ~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s   38 (131)
T PRK12559          7 TASCASCRKAKAWLEENQIDYTEKNIVSNSMT   38 (131)
T ss_pred             CCCChHHHHHHHHHHHcCCCeEEEEeeCCcCC
Confidence            48899999999999999999988 99887643

>PRK10357 putative glutathione S-transferase; Provisional

Probab=94.35  E-value=0.17  Score=38.72  Aligned_cols=62  Identities=16%  Similarity=0.091  Sum_probs=44.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSD  144 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d  144 (169)
                      .+|..     +.||+++++.-+|...||+|+.+.+..... ...+.+++...++|.+.. +|.-+-...
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~   64 (202)
T PRK10357          2 KLIGS-----YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSP   64 (202)
T ss_pred             eeecC-----CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHH
Confidence            46665     579999999999999999999887764211 123455677789999985 565444433

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=94.26  E-value=0.48  Score=30.87  Aligned_cols=56  Identities=16%  Similarity=0.143  Sum_probs=43.3

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~  151 (169)
                      .+|+|-++..+|+-.|++|+.+... ++       ..+....+|.|..+|+.|+|++.+.+..+
T Consensus        15 ~sp~clk~~~~Lr~~~~~~~v~~~~-n~-------~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~   70 (73)
T cd03078          15 VDPECLAVLAYLKFAGAPLKVVPSN-NP-------WRSPTGKLPALLTSGTKISGPEKIIEYLR   70 (73)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEecC-CC-------CCCCCCccCEEEECCEEecChHHHHHHHH
Confidence            4699999999999999999766432 21       12334579999999999999988877543

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=94.23  E-value=0.18  Score=41.20  Aligned_cols=68  Identities=13%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCC--HH-----HHHHHHHhcCCCCCc
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILED--PE-----LKSAVKAFSHWPTFP  131 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~--~~-----~~~~l~~~~g~~t~P  131 (169)
                      ..+.|+++.+...++.|.+|     .||+|.+..-+|    +++|++...++++..  +.     .-..+.+..|-..+|
T Consensus       141 ~~~~i~~la~~~gL~fFy~~-----~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P  215 (256)
T TIGR02739       141 KEKAIQQLSQSYGLFFFYRG-----KSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFP  215 (256)
T ss_pred             HHHHHHHHHhceeEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCc
Confidence            45678888888999999995     699999876665    678999888888753  11     112233444678899


Q ss_pred             EEEe
Q 030914          132 QIFI  135 (169)
Q Consensus       132 ~vfi  135 (169)
                      .+|+
T Consensus       216 al~L  219 (256)
T TIGR02739       216 ALYL  219 (256)
T ss_pred             eEEE
Confidence            9987

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PLN02395 glutathione S-transferase

Probab=94.22  E-value=0.25  Score=38.19  Aligned_cols=68  Identities=15%  Similarity=0.013  Sum_probs=49.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.| .+.++.-+|.+.|++|+.+.++..  .....++.+.+-..++|.+..+|..+.....+.+.
T Consensus         3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (215)
T PLN02395          3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRY   72 (215)
T ss_pred             EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            567864     344 489999999999999998877532  23335677788888999999888777665555543

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=94.19  E-value=0.28  Score=35.16  Aligned_cols=64  Identities=19%  Similarity=0.208  Sum_probs=37.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc-------C--CCCeEEEEcCCCHH---------------------HHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------Y--NVPISARNILEDPE---------------------LKSAVK  122 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~--~v~~~~~di~~~~~---------------------~~~~l~  122 (169)
                      .+.|+|+.-+    +||+.|++....|++       .  ++.+..++++.+++                     ....+.
T Consensus        17 Gk~vll~F~a----twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   92 (132)
T cd02964          17 GKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE   92 (132)
T ss_pred             CCEEEEEEEC----CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence            4456666554    599999987665532       2  34455556655431                     223455


Q ss_pred             HhcCCCCCcEEE-eC--CeEe
Q 030914          123 AFSHWPTFPQIF-IK--GEFI  140 (169)
Q Consensus       123 ~~~g~~t~P~vf-i~--g~~i  140 (169)
                      +..+...+|.++ |+  |+.+
T Consensus        93 ~~~~v~~iPt~~lid~~G~iv  113 (132)
T cd02964          93 KQFKVEGIPTLVVLKPDGDVV  113 (132)
T ss_pred             HHcCCCCCCEEEEECCCCCEE
Confidence            555677889887 43  5544

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=94.16  E-value=0.27  Score=35.04  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=38.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHH-H-------------------HHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPE-L-------------------KSAVK  122 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~-~-------------------~~~l~  122 (169)
                      +...|+||.-.    +||+.|++....|.+.         ++.+..++++.+.+ .                   ...+.
T Consensus        17 ~gk~vll~Fwa----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T cd03009          17 EGKTVGLYFSA----SWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLN   92 (131)
T ss_pred             CCcEEEEEEEC----CCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHH
Confidence            34557776654    5999999876665422         34455556654432 1                   12344


Q ss_pred             HhcCCCCCcEEEe---CCeEe
Q 030914          123 AFSHWPTFPQIFI---KGEFI  140 (169)
Q Consensus       123 ~~~g~~t~P~vfi---~g~~i  140 (169)
                      +..|...+|.+|+   +|+.+
T Consensus        93 ~~~~v~~~P~~~lid~~G~i~  113 (131)
T cd03009          93 RTFKIEGIPTLIILDADGEVV  113 (131)
T ss_pred             HHcCCCCCCEEEEECCCCCEE
Confidence            4557778888865   45543

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=94.15  E-value=0.018  Score=37.26  Aligned_cols=31  Identities=16%  Similarity=0.233  Sum_probs=27.0

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCcccc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTH   47 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~   47 (169)
                      |.|+++.++.++|.++|++|.. |+..+++.+
T Consensus         9 ~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~   40 (73)
T cd03027           9 LGCEDCTAVRLFLREKGLPYVEINIDIFPERK   40 (73)
T ss_pred             CCChhHHHHHHHHHHCCCceEEEECCCCHHHH
Confidence            8999999999999999999988 888775543

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=94.14  E-value=0.29  Score=37.68  Aligned_cols=65  Identities=14%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCCCHHHHHHHHH----------------hcCCCCCc
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILEDPELKSAVKA----------------FSHWPTFP  131 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~~~~~l~~----------------~~g~~t~P  131 (169)
                      +.++++||.-+    +|||.|++....+    ++.++.+.-+..+..++.+..+++                ..|...+|
T Consensus        73 ~gk~vvl~F~a----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P  148 (189)
T TIGR02661        73 PGRPTLLMFTA----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIP  148 (189)
T ss_pred             CCCEEEEEEEC----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccc
Confidence            34456655443    6999999765544    445666655554333333333332                22446789


Q ss_pred             EEEe---CCeEe
Q 030914          132 QIFI---KGEFI  140 (169)
Q Consensus       132 ~vfi---~g~~i  140 (169)
                      ..|+   +|+.+
T Consensus       149 ~~~lID~~G~I~  160 (189)
T TIGR02661       149 YGVLLDQDGKIR  160 (189)
T ss_pred             eEEEECCCCeEE
Confidence            8776   46544

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=94.09  E-value=0.19  Score=35.18  Aligned_cols=68  Identities=16%  Similarity=0.166  Sum_probs=41.5

Q ss_pred             cHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH-HHhcCCC------CeEE--EEcCCCHHHHHHHHHhcCCCCCc
Q 030914           62 SLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR-VLGAYNV------PISA--RNILEDPELKSAVKAFSHWPTFP  131 (169)
Q Consensus        62 ~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~-~L~~~~v------~~~~--~di~~~~~~~~~l~~~~g~~t~P  131 (169)
                      +.++.++...++++ ++||..+    ++|++|+...+ +|..-.|      .|..  .|+.. ++.. .+....+...+|
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~-~~~~~~~~~~~P   78 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQ-RFLQSYKVDKYP   78 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHH-HHHHHhCccCCC
Confidence            56677777776554 7788776    79999998654 4433332      2433  35543 3333 355555677899


Q ss_pred             EEEe
Q 030914          132 QIFI  135 (169)
Q Consensus       132 ~vfi  135 (169)
                      .+.+
T Consensus        79 ~~~~   82 (114)
T cd02958          79 HIAI   82 (114)
T ss_pred             eEEE
Confidence            8843

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK10026 arsenate reductase; Provisional

Probab=94.08  E-value=0.25  Score=36.74  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|+.|+++.++|.++|++|.. |++.++-+                 .+.|..++....+                 .
T Consensus         9 ~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt-----------------~~eL~~~l~~~g~-----------------~   54 (141)
T PRK10026          9 NPACGTSRNTLEMIRNSGTEPTIIHYLETPPT-----------------RDELVKLIADMGI-----------------S   54 (141)
T ss_pred             CCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcC-----------------HHHHHHHHHhCCC-----------------C
Confidence            58999999999999999999988 99987543                 2444444442211                 1


Q ss_pred             HHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeC-CeEeec-cHHHHHHH
Q 030914           95 AVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIK-GEFIGG-SDIILNMH  150 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG-~d~l~~~~  150 (169)
                      +..+++..+-.|....+..    ..++.+.|.+...--.-|.|+-+ |..+|- .+.+.++.
T Consensus        55 ~~~lint~~~~yr~L~~~~~~ls~~e~l~ll~~~P~LIKRPIi~~~~~a~i~Rp~e~v~~~l  116 (141)
T PRK10026         55 VRALLRKNVEPYEELGLAEDKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCRPSEVVLEIL  116 (141)
T ss_pred             HHHHHHcCCchHHHcCCCccCCCHHHHHHHHHhCccceeCcEEEcCCCeEEECCHHHHHHHh
Confidence            3455555555554433322    23343444332222244998875 566665 34455554

>PRK10853 putative reductase; Provisional

Probab=94.06  E-value=0.21  Score=35.90  Aligned_cols=30  Identities=17%  Similarity=0.130  Sum_probs=26.6

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|+.|+++.++|.++|+.|.. |+..++-
T Consensus         7 ~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~   37 (118)
T PRK10853          7 IKNCDTIKKARRWLEAQGIDYRFHDYRVDGL   37 (118)
T ss_pred             CCCCHHHHHHHHHHHHcCCCcEEeehccCCc
Confidence            58899999999999999999988 8888753

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=94.06  E-value=0.0046  Score=38.53  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=28.6

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCccccCCC
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDF   50 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~   50 (169)
                      |.|+++.++.+.|++.|++|.. |+..+++.++.+
T Consensus         7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l   41 (60)
T PF00462_consen    7 PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREEL   41 (60)
T ss_dssp             TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHH
Confidence            8999999999999999999988 998886444333

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=94.03  E-value=0.13  Score=36.54  Aligned_cols=31  Identities=26%  Similarity=0.400  Sum_probs=27.1

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+
T Consensus         6 ~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~   37 (117)
T TIGR01617         6 SPNCTTCKKARRWLEANGIEYQFIDIGEDGPT   37 (117)
T ss_pred             CCCCHHHHHHHHHHHHcCCceEEEecCCChhh
Confidence            58899999999999999999988 88877544

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=94.02  E-value=0.21  Score=40.51  Aligned_cols=68  Identities=13%  Similarity=0.291  Sum_probs=48.6

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH----hcCCCCeEEEEcCC--CHHH-----HHHHHHhcCCCCCc
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYNVPISARNILE--DPEL-----KSAVKAFSHWPTFP  131 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~v~~~~~di~~--~~~~-----~~~l~~~~g~~t~P  131 (169)
                      ..+.|+++.+...++.|.+|     .||+|.+.--+|    +.+|++...+.++.  .+..     -....+..|...+|
T Consensus       134 ~~~~i~~la~~~GL~fFy~s-----~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P  208 (248)
T PRK13703        134 QRQAIAKLAEHYGLMFFYRG-----QDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP  208 (248)
T ss_pred             HHHHHHHHHhcceEEEEECC-----CCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence            35568888889999999995     699999766555    67788888888874  2221     11222445678899


Q ss_pred             EEEe
Q 030914          132 QIFI  135 (169)
Q Consensus       132 ~vfi  135 (169)
                      .+|+
T Consensus       209 Al~L  212 (248)
T PRK13703        209 ALML  212 (248)
T ss_pred             eEEE
Confidence            9987

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=93.94  E-value=0.36  Score=34.14  Aligned_cols=66  Identities=21%  Similarity=0.470  Sum_probs=46.1

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcC-CCCCcEEEe--CCeEee
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSH-WPTFPQIFI--KGEFIG  141 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g-~~t~P~vfi--~g~~iG  141 (169)
                      ...+++||=-+|    .||-+..|.+-|++.      .+++-.+||..+..+-.++.+..| ...-||+++  ||+.|-
T Consensus        18 ~~~~~~iFKHSt----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~   92 (105)
T PF11009_consen   18 KEKPVLIFKHST----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW   92 (105)
T ss_dssp             --SEEEEEEE-T----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred             ccCcEEEEEeCC----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence            356799997775    799999998866432      288999999999999999988877 346799865  888664

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=93.89  E-value=0.37  Score=37.39  Aligned_cols=54  Identities=13%  Similarity=0.097  Sum_probs=41.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +.||..     + +++|.++.-+|.+.|++|+.++|+.  ++....++.+.+....+|.+..
T Consensus         2 ~~Ly~~-----~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD   57 (215)
T ss_pred             eEEEEC-----C-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence            357755     3 5889999999999999999887754  3333456778888889999987

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=93.86  E-value=0.24  Score=42.46  Aligned_cols=65  Identities=17%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             HHHHHhhcCC-eE-EEeecCCCCCCCccHHHHHHHHh-------cCC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914           66 VVEQDVKENP-VM-LYMKGVPEFPQCGFSSLAVRVLG-------AYN--VPISARNILEDPELKSAVKAFSHWPTFPQI-  133 (169)
Q Consensus        66 ~i~~~~~~~~-Vv-ly~k~~~~~~~C~~c~~a~~~L~-------~~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-  133 (169)
                      .+.++++.++ ++ .|..     +||++|++....+.       ..+  +.+..+|.+.+.++.    +..+...+|.+ 
T Consensus        10 ~~~~~i~~~~~~~v~f~a-----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~   80 (462)
T TIGR01130        10 NFDDFIKSHEFVLVEFYA-----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLA----QKYGVSGYPTLK   80 (462)
T ss_pred             HHHHHHhcCCCEEEEEEC-----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHH----HhCCCccccEEE
Confidence            3445555555 34 4444     89999998765443       334  677788887775543    33467788887 


Q ss_pred             -EeCCeE
Q 030914          134 -FIKGEF  139 (169)
Q Consensus       134 -fi~g~~  139 (169)
                       |-+|+.
T Consensus        81 ~~~~g~~   87 (462)
T TIGR01130        81 IFRNGED   87 (462)
T ss_pred             EEeCCcc
Confidence             445654

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PTZ00102 disulphide isomerase; Provisional

Probab=93.46  E-value=0.3  Score=42.41  Aligned_cols=65  Identities=20%  Similarity=0.281  Sum_probs=37.9

Q ss_pred             HHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHH-------hcC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-
Q 030914           66 VVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVL-------GAY--NVPISARNILEDPELKSAVKAFSHWPTFPQIF-  134 (169)
Q Consensus        66 ~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L-------~~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-  134 (169)
                      .+++.++.++ ++|+..+    +||++|++....+       ...  ++.+-.+|...+.++.    +..+-..+|.++ 
T Consensus        41 ~f~~~i~~~~~~lv~f~a----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~----~~~~i~~~Pt~~~  112 (477)
T PTZ00102         41 TFDKFITENEIVLVKFYA----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELA----QEFGVRGYPTIKF  112 (477)
T ss_pred             hHHHHHhcCCcEEEEEEC----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHH----HhcCCCcccEEEE
Confidence            3444454443 4444332    8999999776533       222  3667777877766543    334567788774 


Q ss_pred             -eCCe
Q 030914          135 -IKGE  138 (169)
Q Consensus       135 -i~g~  138 (169)
                       -+|.
T Consensus       113 ~~~g~  117 (477)
T PTZ00102        113 FNKGN  117 (477)
T ss_pred             EECCc
Confidence             3554

>PLN02309 5'-adenylylsulfate reductase

Probab=93.34  E-value=0.24  Score=43.65  Aligned_cols=46  Identities=20%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             CCCccHHHHHHHHhcC-------CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGAY-------NVPISARNIL-EDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-------~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      |||++|+.+...|.+.       ++.+-.+|++ .+.++   ..+..+...+|.+++
T Consensus       375 pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~  428 (457)
T PLN02309        375 PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL  428 (457)
T ss_pred             CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence            8999999887766433       4666777776 33332   222346678888743

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=93.26  E-value=0.028  Score=36.74  Aligned_cols=30  Identities=20%  Similarity=0.331  Sum_probs=25.9

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|+++.++.++|.++|++|.. |+..+++
T Consensus         6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~   36 (79)
T TIGR02181         6 KPYCPYCTRAKALLSSKGVTFTEIRVDGDPA   36 (79)
T ss_pred             cCCChhHHHHHHHHHHcCCCcEEEEecCCHH
Confidence            48899999999999999999988 8876653

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK10638 glutaredoxin 3; Provisional

Probab=93.19  E-value=0.033  Score=37.06  Aligned_cols=30  Identities=10%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|+|+.++.++|.+.|++|.. |+..+++
T Consensus         9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~   39 (83)
T PRK10638          9 KATCPFCHRAKALLNSKGVSFQEIPIDGDAA   39 (83)
T ss_pred             CCCChhHHHHHHHHHHcCCCcEEEECCCCHH
Confidence            47899999999999999999988 8866543

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=92.99  E-value=0.42  Score=34.74  Aligned_cols=54  Identities=17%  Similarity=0.285  Sum_probs=35.6

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCH-------HHHHHHHHhcCCCCCcEEEeCCeEe--eccHHHHH
Q 030914           94 LAVRVLGAYNVPISARNILEDP-------ELKSAVKAFSHWPTFPQIFIKGEFI--GGSDIILN  148 (169)
Q Consensus        94 ~a~~~L~~~~v~~~~~di~~~~-------~~~~~l~~~~g~~t~P~vfi~g~~i--GG~d~l~~  148 (169)
                      .+.+.|++.|+++..+++.++|       .+++.|. ..|...+|.++|||+.+  |.|-...+
T Consensus        31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~-~~G~e~LPitlVdGeiv~~G~YPt~eE   93 (123)
T PF06953_consen   31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQ-TEGAEALPITLVDGEIVKTGRYPTNEE   93 (123)
T ss_dssp             HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHH-HH-GGG-SEEEETTEEEEESS---HHH
T ss_pred             HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHH-HcCcccCCEEEECCEEEEecCCCCHHH
Confidence            5667889999999999999865       4444443 35788999999999976  66654333

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=92.86  E-value=0.45  Score=35.68  Aligned_cols=59  Identities=14%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEcCCCHH---------HHHHHHHhc---CCCCCcEEEe
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNILEDPE---------LKSAVKAFS---HWPTFPQIFI  135 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di~~~~~---------~~~~l~~~~---g~~t~P~vfi  135 (169)
                      ....++.|..     +|||.|++..-.|+    ++++.+..++++....         ..+.+....   +-..+|..|+
T Consensus        50 ~~~~lvnFWA-----sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        50 DDYALVFFYQ-----STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             CCCEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            3445777776     59999998777664    5577776777764310         012223333   4578899866

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PRK11752 putative S-transferase; Provisional

Probab=92.71  E-value=0.58  Score=37.93  Aligned_cols=73  Identities=16%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             HhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCC----
Q 030914           70 DVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKG----  137 (169)
Q Consensus        70 ~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g----  137 (169)
                      ....+++.||+.      .+++|.++.-+|.+.      |++|+.+.|+-  .+....++.+.+...++|.+..++    
T Consensus        39 ~~~~~~~~Ly~~------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~  112 (264)
T PRK11752         39 PVGKHPLQLYSL------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPP  112 (264)
T ss_pred             CCCCCCeEEecC------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCC
Confidence            345568999975      389999999999986      88898776643  333345677788888999998753    


Q ss_pred             eEeeccHHHHH
Q 030914          138 EFIGGSDIILN  148 (169)
Q Consensus       138 ~~iGG~d~l~~  148 (169)
                      ..+.....+..
T Consensus       113 ~~L~ES~AIl~  123 (264)
T PRK11752        113 IRVFESGAILL  123 (264)
T ss_pred             eEEEcHHHHHH
Confidence            34544444443

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=92.71  E-value=0.4  Score=35.79  Aligned_cols=27  Identities=11%  Similarity=0.148  Sum_probs=19.7

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~  101 (169)
                      .+...|+||.-.    .|||.|++..-.|.+
T Consensus        23 ~kgk~vlL~FwA----sWCppCr~e~P~L~~   49 (146)
T cd03008          23 LENRVLLLFFGA----VVSPQCQLFAPKLKD   49 (146)
T ss_pred             hCCCEEEEEEEC----CCChhHHHHHHHHHH
Confidence            345567777665    599999998877754

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>smart00594 UAS UAS domain

Probab=92.44  E-value=1.5  Score=31.21  Aligned_cols=69  Identities=20%  Similarity=0.232  Sum_probs=42.6

Q ss_pred             ccHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHH-HHhcCCC------CeEE--EEcCCCHHHHHHHHHhcCCCCC
Q 030914           61 LSLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVR-VLGAYNV------PISA--RNILEDPELKSAVKAFSHWPTF  130 (169)
Q Consensus        61 ~~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~-~L~~~~v------~~~~--~di~~~~~~~~~l~~~~g~~t~  130 (169)
                      .+.++.++...+.. .++||..+    ++|+.|....+ +|..-.|      .|..  .|+...+.  ..+....+..++
T Consensus        14 gs~~~a~~~Ak~~~K~~lv~~~~----~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg--~~l~~~~~~~~~   87 (122)
T smart00594       14 GSLEAAKQEASRQRRLLWLYLHS----QDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG--QRVSQFYKLDSF   87 (122)
T ss_pred             CCHHHHHHHHHhhcCCEEEEEeC----CCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH--HHHHHhcCcCCC
Confidence            46777777777664 56777765    79999997544 3332221      2433  56654443  245555677889


Q ss_pred             cEEEe
Q 030914          131 PQIFI  135 (169)
Q Consensus       131 P~vfi  135 (169)
                      |.+.+
T Consensus        88 P~~~~   92 (122)
T smart00594       88 PYVAI   92 (122)
T ss_pred             CEEEE
Confidence            98854

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.37  E-value=0.25  Score=35.82  Aligned_cols=57  Identities=14%  Similarity=0.130  Sum_probs=38.4

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCC----CCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHH
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVP----EFPQCGFSSLAVRVLGA------YNVPISARNILEDPEL  117 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~----~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~  117 (169)
                      ++.++.++..-+...|.+|..|..    -.+|||.|.+|.-++.+      .++.+..++|..-+..
T Consensus        13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~W   79 (128)
T KOG3425|consen   13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYW   79 (128)
T ss_pred             HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcc
Confidence            466777887777666766654433    37999999998775532      2455777788764443

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=92.33  E-value=1.1  Score=30.71  Aligned_cols=59  Identities=17%  Similarity=0.192  Sum_probs=33.4

Q ss_pred             HHHHHHHHhcC--------CCCeEEEEcCCCHH---HHHHHHHhc-CCCCCcEEEeCCeEee-ccHHHHHHH
Q 030914           92 SSLAVRVLGAY--------NVPISARNILEDPE---LKSAVKAFS-HWPTFPQIFIKGEFIG-GSDIILNMH  150 (169)
Q Consensus        92 c~~a~~~L~~~--------~v~~~~~di~~~~~---~~~~l~~~~-g~~t~P~vfi~g~~iG-G~d~l~~~~  150 (169)
                      ++....+|+..        ...|+++||...++   .++...++- .---+|.|.|+|+.|| |+-.|+..+
T Consensus        18 SkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EGnp~LK~I~   89 (93)
T PF07315_consen   18 SKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEGNPQLKDIY   89 (93)
T ss_dssp             HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEESS--HHHHH
T ss_pred             chhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecCCccHHHHH
Confidence            34555666432        34578999986443   233333333 3456799999999998 776666554

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=92.28  E-value=0.046  Score=35.14  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=24.8

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDP   44 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~   44 (169)
                      |.|+++.++..+|.++|++|.. ++..++
T Consensus         8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~   36 (75)
T cd03418           8 PNCPYCVRAKALLDKKGVDYEEIDVDGDP   36 (75)
T ss_pred             CCChHHHHHHHHHHHCCCcEEEEECCCCH
Confidence            8899999999999999999988 887653

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.13  E-value=0.38  Score=32.48  Aligned_cols=51  Identities=10%  Similarity=0.025  Sum_probs=34.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCC--CCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWP--TFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~--t~P~vfi  135 (169)
                      +++|..     ++|+.|..++..|++.      .+.|..+|++..+.+    .+..|-.  .+|++.+
T Consensus        16 ~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~----~~~~~i~~~~~P~~~~   74 (103)
T cd02982          16 LVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRH----LEYFGLKEEDLPVIAI   74 (103)
T ss_pred             EEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHH----HHHcCCChhhCCEEEE
Confidence            444554     6899999999988553      256677777665543    3334555  8999865

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=92.11  E-value=0.98  Score=29.30  Aligned_cols=58  Identities=16%  Similarity=0.068  Sum_probs=42.1

Q ss_pred             cHHHHHHHHhcCCCCeEEEEcC--CCHHHHHHHHHhcCC-CCCcEEEeC-CeEeeccHHHHH
Q 030914           91 FSSLAVRVLGAYNVPISARNIL--EDPELKSAVKAFSHW-PTFPQIFIK-GEFIGGSDIILN  148 (169)
Q Consensus        91 ~c~~a~~~L~~~~v~~~~~di~--~~~~~~~~l~~~~g~-~t~P~vfi~-g~~iGG~d~l~~  148 (169)
                      .|..++-+|...|++|+.+.++  .++...+++.+.... ..+|.+-.+ |..+-....+..
T Consensus        11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~   72 (76)
T PF02798_consen   11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILR   72 (76)
T ss_dssp             TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred             chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence            7888999999999999887664  344444677777767 899999999 887766544443

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=92.03  E-value=0.053  Score=33.78  Aligned_cols=29  Identities=14%  Similarity=0.265  Sum_probs=24.7

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      |.|++++++..+|.+++++|.. |+..+++
T Consensus         8 ~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~   37 (72)
T cd02066           8 STCPYCKRAKRLLESLGIEFEEIDILEDGE   37 (72)
T ss_pred             CCCHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence            5599999999999999999887 8877644

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=91.69  E-value=1.1  Score=35.28  Aligned_cols=64  Identities=27%  Similarity=0.263  Sum_probs=34.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCC----CCeEEEEcC-----------CCHH---HHHHHHHhcC--CCCCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYN----VPISARNIL-----------EDPE---LKSAVKAFSH--WPTFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~----v~~~~~di~-----------~~~~---~~~~l~~~~g--~~t~P~vfi  135 (169)
                      |.||+.     .+|.-|--|-++|.++.    |=.-.+.|+           ..++   .+..+.+..|  ....||++|
T Consensus         2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV   76 (202)
T PF06764_consen    2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV   76 (202)
T ss_dssp             EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred             eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence            679998     78999999999886553    211222222           2232   3334444443  456799999


Q ss_pred             CCe-EeeccH
Q 030914          136 KGE-FIGGSD  144 (169)
Q Consensus       136 ~g~-~iGG~d  144 (169)
                      ||+ +.+|.+
T Consensus        77 nG~~~~~g~~   86 (202)
T PF06764_consen   77 NGREHRVGSD   86 (202)
T ss_dssp             TTTEEEETT-
T ss_pred             CCeeeeeccC
Confidence            995 667776

The function of this family is unknown.; PDB: 2AXO_A.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=91.69  E-value=0.61  Score=41.47  Aligned_cols=68  Identities=19%  Similarity=0.297  Sum_probs=44.2

Q ss_pred             HHHHHHHhhcCCeEEEeecCCCCCCCccHH-------HHHHHHhcC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914           64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSS-------LAVRVLGAY--NVPISARNILEDPELKSAVKAFSHWPTFPQI-  133 (169)
Q Consensus        64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~-------~a~~~L~~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-  133 (169)
                      .+.+++.|..|..++..--.   |||++|+       +|-+.|.+.  .|..-.+|-..+    ..+....+-+.+|.+ 
T Consensus        32 ~dnf~~~i~~~~~vlVeFYA---PWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~----~~~~~~y~v~gyPTlk  104 (493)
T KOG0190|consen   32 KDNFKETINGHEFVLVEFYA---PWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE----SDLASKYEVRGYPTLK  104 (493)
T ss_pred             cccHHHHhccCceEEEEEEc---hhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh----hhhHhhhcCCCCCeEE
Confidence            35567778888866443221   8999998       456677777  455666666554    234444467778876 


Q ss_pred             -EeCCe
Q 030914          134 -FIKGE  138 (169)
Q Consensus       134 -fi~g~  138 (169)
                       |.||+
T Consensus       105 iFrnG~  110 (493)
T KOG0190|consen  105 IFRNGR  110 (493)
T ss_pred             EEecCC
Confidence             66776

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=91.62  E-value=0.067  Score=34.51  Aligned_cols=30  Identities=10%  Similarity=0.396  Sum_probs=26.3

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|++++++.++|.++|++|.. |+..|++
T Consensus         6 ~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~   36 (72)
T TIGR02194         6 KNNCVQCKMTKKALEEHGIAFEEINIDEQPE   36 (72)
T ss_pred             CCCCHHHHHHHHHHHHCCCceEEEECCCCHH
Confidence            37899999999999999999988 8887754

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=91.51  E-value=0.13  Score=33.77  Aligned_cols=33  Identities=18%  Similarity=0.286  Sum_probs=27.8

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPND   43 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d   43 (169)
                      ++||.|     |.|+++.++.+.|.+.|++|.. ++..+
T Consensus        10 V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~   43 (79)
T TIGR02190        10 VVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGND   43 (79)
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCC
Confidence            456665     8999999999999999999988 77654

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PTZ00057 glutathione s-transferase; Provisional

Probab=91.48  E-value=1.5  Score=33.83  Aligned_cols=69  Identities=13%  Similarity=0.205  Sum_probs=47.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH-H--HHHHH--HhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE-L--KSAVK--AFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~-~--~~~l~--~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .+.||.-     +..+.|..++-+|+..|++|+.+.+....+ .  .+.++  ..+....+|.+.+||..+....-+..
T Consensus         4 ~~~L~y~-----~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~   77 (205)
T PTZ00057          4 EIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR   77 (205)
T ss_pred             ceEEEec-----CCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence            3667765     346778899999999999999988753222 1  11112  24667899999999977766554444

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=91.42  E-value=1.3  Score=33.42  Aligned_cols=39  Identities=18%  Similarity=0.281  Sum_probs=25.2

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCC
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILE  113 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~  113 (169)
                      .+...|++|..+    .|||.|++....|+   +.++.+..++++.
T Consensus        61 ~~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~  102 (173)
T TIGR00385        61 IQGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKD  102 (173)
T ss_pred             cCCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            345566666554    69999998766554   3366666666643

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.95  E-value=0.49  Score=40.72  Aligned_cols=77  Identities=19%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCC---CeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v---~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ..+++-++|+.+-......-|..     -.|..|-.+++.|+-+.|   .....-|+ ..-.+++...+ +--.+|.||.
T Consensus       103 ~~q~vieqik~i~g~~~FETy~S-----ltC~nCPDVVQALN~msvlNp~I~H~~Id-Ga~Fq~Evear-~IMaVPtvfl  175 (520)
T COG3634         103 EDQDVIEQIKAIDGDFHFETYFS-----LTCHNCPDVVQALNLMSVLNPRIKHTAID-GALFQDEVEAR-NIMAVPTVFL  175 (520)
T ss_pred             hhHHHHHHHHhcCCceeEEEEEE-----eeccCChHHHHHHHHHHhcCCCceeEEec-chhhHhHHHhc-cceecceEEE
Confidence            44566777777777777887776     358778777777765543   34444443 34455555543 4678999999


Q ss_pred             CCeEeec
Q 030914          136 KGEFIGG  142 (169)
Q Consensus       136 ~g~~iGG  142 (169)
                      ||+-.|.
T Consensus       176 nGe~fg~  182 (520)
T COG3634         176 NGEEFGQ  182 (520)
T ss_pred             cchhhcc
Confidence            9998773

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=90.56  E-value=1.6  Score=29.86  Aligned_cols=25  Identities=20%  Similarity=0.542  Sum_probs=17.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~  101 (169)
                      ..+++|+.-+    +|||.|++....|++
T Consensus        21 gk~vvl~F~~----~wC~~C~~~~p~l~~   45 (114)
T cd02967          21 GRPTLLFFLS----PTCPVCKKLLPVIRS   45 (114)
T ss_pred             CCeEEEEEEC----CCCcchHhHhHHHHH
Confidence            4456655554    699999987766644

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PTZ00102 disulphide isomerase; Provisional

Probab=90.24  E-value=0.45  Score=41.31  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+|+|+...    +||++|+.....|++.        .+.+..+|.+.++..    ....+.+.+|.+++
T Consensus       376 k~vlv~f~a----~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~----~~~~~v~~~Pt~~~  437 (477)
T PTZ00102        376 KDVLLEIYA----PWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETP----LEEFSWSAFPTILF  437 (477)
T ss_pred             CCEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccc----hhcCCCcccCeEEE
Confidence            446666554    7999999888777543        144566777665543    22335677888744

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.00  E-value=2.9  Score=27.51  Aligned_cols=60  Identities=12%  Similarity=0.025  Sum_probs=38.6

Q ss_pred             CccHHHHHHHHhcCCCCeEEEEcCCCH-------HHHHHHH-HhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           89 CGFSSLAVRVLGAYNVPISARNILEDP-------ELKSAVK-AFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        89 C~~c~~a~~~L~~~~v~~~~~di~~~~-------~~~~~l~-~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      -+.|.++.-+|...|++|+.+.++...       +.+.... ...-..++|.+..||..+.-..-+..
T Consensus         9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~   76 (82)
T cd03075           9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR   76 (82)
T ss_pred             ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence            356888889999999999987775321       1111111 11145699999988876665544443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=89.93  E-value=1.2  Score=32.93  Aligned_cols=64  Identities=23%  Similarity=0.255  Sum_probs=35.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHH-HH-----------------HHHHHhcCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPE-LK-----------------SAVKAFSHW  127 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~-~~-----------------~~l~~~~g~  127 (169)
                      .+.++|+.-.    ++|+.|+.....|       ...++.+..++.+.+.+ ++                 ..+.+..|.
T Consensus        61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  136 (173)
T PRK03147         61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGV  136 (173)
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCC
Confidence            3445555443    6999999755444       22346666666654432 22                 233344566


Q ss_pred             CCCcEEE-e--CCeEe
Q 030914          128 PTFPQIF-I--KGEFI  140 (169)
Q Consensus       128 ~t~P~vf-i--~g~~i  140 (169)
                      ..+|.+| |  +|+.+
T Consensus       137 ~~~P~~~lid~~g~i~  152 (173)
T PRK03147        137 GPLPTTFLIDKDGKVV  152 (173)
T ss_pred             CCcCeEEEECCCCcEE
Confidence            7788765 4  46644

>PRK10542 glutathionine S-transferase; Provisional

Probab=89.45  E-value=1.3  Score=33.68  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=40.6

Q ss_pred             HHHHHHHHhcCCCCeEEEEcCCC--H-HHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHH
Q 030914           92 SSLAVRVLGAYNVPISARNILED--P-ELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILN  148 (169)
Q Consensus        92 c~~a~~~L~~~~v~~~~~di~~~--~-~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~  148 (169)
                      +.++.-+|.+.|++|+.+.|+..  + ...+++.+++....+|.+-+ ||..|-....+.+
T Consensus        11 ~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~   71 (201)
T PRK10542         11 SLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQ   71 (201)
T ss_pred             HHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHH
Confidence            66777789999999998776532  1 12256778888889999987 5666665544444

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=89.41  E-value=1.1  Score=31.00  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=35.5

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ...+++|+.-.+   .+||+|.....-|       ++.++.+..+..+...++++.+++..  ..+|.+.-
T Consensus        24 ~gk~~vl~f~~~---~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~--~~~~~~~D   89 (124)
T PF00578_consen   24 KGKPVVLFFWPT---AWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYG--LPFPVLSD   89 (124)
T ss_dssp             TTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHT--CSSEEEEE
T ss_pred             CCCcEEEEEeCc---cCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhc--cccccccC
Confidence            445666655442   4899997555433       44567777777765555666555543  56666554

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=89.38  E-value=0.39  Score=38.88  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=21.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNI  111 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di  111 (169)
                      .|++|+-     |.||||++.-+-+.    .-+|.+..+.+
T Consensus       120 ~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~  155 (251)
T PRK11657        120 IVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV  155 (251)
T ss_pred             EEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence            3667777     89999999866543    32366555543

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=89.14  E-value=2.3  Score=29.86  Aligned_cols=36  Identities=28%  Similarity=0.274  Sum_probs=21.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC----CCCeEEEEcC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----NVPISARNIL  112 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~v~~~~~di~  112 (169)
                      ...++|+.-+    .|||.|.+....|++.    ++.+..++++
T Consensus        25 gk~vvv~F~a----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~   64 (127)
T cd03010          25 GKPYLLNVWA----SWCAPCREEHPVLMALARQGRVPIYGINYK   64 (127)
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHhcCcEEEEEECC
Confidence            3444544444    5999999877766443    3555555543

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=88.81  E-value=2.6  Score=30.31  Aligned_cols=50  Identities=18%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHHHHHHHHH
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPELKSAVKA  123 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~~~~~l~~  123 (169)
                      .+..+++|+.-.+   .|||.|......|       ...++.+..+....++.+++.+.+
T Consensus        26 ~~gk~~vv~f~~~---~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~   82 (146)
T PF08534_consen   26 FKGKPVVVNFWAS---AWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKK   82 (146)
T ss_dssp             GTTSEEEEEEEST---TTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHH
T ss_pred             hCCCeEEEEEEcc---CCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHh
Confidence            4445555554431   3899999665333       445688888888888777776655

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.78  E-value=2  Score=34.03  Aligned_cols=69  Identities=10%  Similarity=0.097  Sum_probs=53.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEE--EcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISAR--NILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~--di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      +..+|+.     +.-+.|+++.-.++..|++|+.+  |+...+....++.+.....++|.+--+|-.+-....+..
T Consensus         2 ~~~ly~~-----~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~   72 (226)
T KOG0867|consen    2 KLKLYGH-----LGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILR   72 (226)
T ss_pred             CceEeec-----CCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHH
Confidence            3567877     67888999999999999999887  444556666677788888899999998887776644333

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=88.62  E-value=1.8  Score=27.86  Aligned_cols=68  Identities=12%  Similarity=0.164  Sum_probs=42.5

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCe-EEEeecCCCCCCCccHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPV-MLYMKGVPEFPQCGFSS   93 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~V-vly~k~~~~~~~C~~c~   93 (169)
                      .+.|+++..+.++|...+++|.. ++..+++              .......+.+......+ ++|..|    ...+.+.
T Consensus         7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~--------------~~~~~~~~~~~~g~~~~P~v~~~g----~~igg~~   68 (82)
T cd03419           7 KSYCPYCKRAKSLLKELGVKPAVVELDQHED--------------GSEIQDYLQELTGQRTVPNVFIGG----KFIGGCD   68 (82)
T ss_pred             cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCC--------------hHHHHHHHHHHhCCCCCCeEEECC----EEEcCHH
Confidence            38899999999999999998866 6665532              11233444444332222 356665    2456667


Q ss_pred             HHHHHHhc
Q 030914           94 LAVRVLGA  101 (169)
Q Consensus        94 ~a~~~L~~  101 (169)
                      .++++.++
T Consensus        69 ~~~~~~~~   76 (82)
T cd03419          69 DLMALHKS   76 (82)
T ss_pred             HHHHHHHc
Confidence            77766654

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=88.49  E-value=2.6  Score=32.12  Aligned_cols=47  Identities=21%  Similarity=0.263  Sum_probs=28.7

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCCCHH-HHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILEDPE-LKSAVK  122 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~~~~-~~~~l~  122 (169)
                      +.+.++|+.-.    .|||.|++....|.   +.++.+..++++.+++ +++.++
T Consensus        67 ~gk~vvv~Fwa----twC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~  117 (185)
T PRK15412         67 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLK  117 (185)
T ss_pred             CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHH
Confidence            44556655444    59999998766553   4467777777665543 444433

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=88.24  E-value=1  Score=33.01  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=23.9

Q ss_pred             cHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHH
Q 030914           62 SLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRV   98 (169)
Q Consensus        62 ~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~   98 (169)
                      +.++.++...+.+ +|+|+..+    .||++|++..+.
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~   44 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKA   44 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHH
Confidence            4677777777655 46666554    799999988774

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=88.20  E-value=0.43  Score=34.45  Aligned_cols=73  Identities=18%  Similarity=0.251  Sum_probs=35.0

Q ss_pred             HHHHHHHHhhc-CCeEEEeecCC---CCCCCccHHHHHHHH----hcC--CCCeEEEEcCCCHHHHH---HHHH--hcCC
Q 030914           63 LKEVVEQDVKE-NPVMLYMKGVP---EFPQCGFSSLAVRVL----GAY--NVPISARNILEDPELKS---AVKA--FSHW  127 (169)
Q Consensus        63 ~~~~i~~~~~~-~~Vvly~k~~~---~~~~C~~c~~a~~~L----~~~--~v~~~~~di~~~~~~~~---~l~~--~~g~  127 (169)
                      ..+.+++.... .++.||..|+.   ..+|||.|.+|.-++    ...  +..+.++.|..-+..++   .++.  ...-
T Consensus         8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l   87 (119)
T PF06110_consen    8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL   87 (119)
T ss_dssp             HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred             HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence            44555554433 55655554443   479999999988544    443  34456667754333322   2333  2345


Q ss_pred             CCCcEEEe
Q 030914          128 PTFPQIFI  135 (169)
Q Consensus       128 ~t~P~vfi  135 (169)
                      ..+|+++-
T Consensus        88 ~~IPTLi~   95 (119)
T PF06110_consen   88 KGIPTLIR   95 (119)
T ss_dssp             -SSSEEEE
T ss_pred             eecceEEE
Confidence            68999864

; PDB: 1V9W_A 1WOU_A.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=88.03  E-value=3.6  Score=29.32  Aligned_cols=54  Identities=24%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      .|++|..+    .+||.|.+-..-|.       ..|+.+.-+..+.....+ .+.+.. ..++|.+.
T Consensus        26 ~vl~f~~~----~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~-~~~~~~-~~~~p~~~   86 (149)
T cd02970          26 VVVVFYRG----FGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLE-AFDKGK-FLPFPVYA   86 (149)
T ss_pred             EEEEEECC----CCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHH-HHHHhc-CCCCeEEE
Confidence            45555544    49999997555443       346666666665444443 233333 34677544

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=87.92  E-value=1.4  Score=29.24  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHh----cC---CCCeEEEEcCCC--HHHHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLG----AY---NVPISARNILED--PELKSAVKA  123 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~---~v~~~~~di~~~--~~~~~~l~~  123 (169)
                      +.++++.-+    .+|+.|.+....|.    ++   ++.+..++++.+  +.+++.+.+
T Consensus        20 k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~   74 (116)
T cd02966          20 KVVLVNFWA----SWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKK   74 (116)
T ss_pred             CEEEEEeec----ccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHH
Confidence            345554443    59999997665553    32   466777777764  344444433

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=87.91  E-value=0.52  Score=30.10  Aligned_cols=28  Identities=21%  Similarity=0.355  Sum_probs=24.8

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDP   44 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~   44 (169)
                      |.|+++.++.+.|.+.|++|.. ++..++
T Consensus         9 ~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~   37 (72)
T cd03029           9 PGCPFCARAKAALQENGISYEEIPLGKDI   37 (72)
T ss_pred             CCCHHHHHHHHHHHHcCCCcEEEECCCCh
Confidence            8899999999999999999987 877654

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=87.85  E-value=0.4  Score=40.20  Aligned_cols=75  Identities=12%  Similarity=0.224  Sum_probs=44.5

Q ss_pred             cCCcccHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcCCCCeE---------EEEcCCCHHHHHHHHHhcC
Q 030914           57 DASGLSLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPIS---------ARNILEDPELKSAVKAFSH  126 (169)
Q Consensus        57 pt~~~~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~---------~~di~~~~~~~~~l~~~~g  126 (169)
                      ||..+++.++.++.-+..- .|=|..     |||.+|++.--+.++.|....         ..|...-+.+    ....|
T Consensus        27 pt~VeDLddkFkdnkdddiW~VdFYA-----PWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~ai----Anefg   97 (468)
T KOG4277|consen   27 PTAVEDLDDKFKDNKDDDIWFVDFYA-----PWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAI----ANEFG   97 (468)
T ss_pred             chhhhhhhHHhhhcccCCeEEEEeec-----hhhhhcccccchhHHhCcchhhcCCceeecccccccchhh----Hhhhc
Confidence            5555666666665544332 333444     899999998888777764332         2333334444    33446


Q ss_pred             CCCCcEE-EeCCeEe
Q 030914          127 WPTFPQI-FIKGEFI  140 (169)
Q Consensus       127 ~~t~P~v-fi~g~~i  140 (169)
                      -..+|.| |..|.++
T Consensus        98 iqGYPTIk~~kgd~a  112 (468)
T KOG4277|consen   98 IQGYPTIKFFKGDHA  112 (468)
T ss_pred             cCCCceEEEecCCee
Confidence            6778877 5666544

>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=87.75  E-value=1.7  Score=34.33  Aligned_cols=60  Identities=15%  Similarity=0.168  Sum_probs=48.8

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      ..+.+.-++.+|.-.|++|+.+.+..+.. ...+|......++|.+-|||..|...-.+..
T Consensus        11 ~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~R   70 (206)
T KOG1695|consen   11 IRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILR   70 (206)
T ss_pred             cchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHH
Confidence            57889999999999999999999987654 5567766778899999999998876554444

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=87.73  E-value=3.3  Score=27.39  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=20.6

Q ss_pred             CCCccHHHHHHHHhc--------CCCCeEEEEcCCC-HHHHHHHHH
Q 030914           87 PQCGFSSLAVRVLGA--------YNVPISARNILED-PELKSAVKA  123 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~--------~~v~~~~~di~~~-~~~~~~l~~  123 (169)
                      ++|+.|.+....|.+        .++.+..+.++.+ ++.++.+++
T Consensus        11 ~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~   56 (95)
T PF13905_consen   11 SWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKK   56 (95)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHh
Confidence            589999987776633        2344555666654 233444433

...

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.63  E-value=1.1  Score=35.60  Aligned_cols=68  Identities=18%  Similarity=0.229  Sum_probs=46.9

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCC--eEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec----cHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP--ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG----SDIIL  147 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~--~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG----~d~l~  147 (169)
                      -.|-||+.     ..|.-|...-+.|++.|+-  ++.+|-...+.  .++++  +--++|-||+||+.+-+    .+++.
T Consensus        11 ~~VkI~~H-----ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f--~~~~~--~V~SvP~Vf~DGel~~~dpVdp~~ie   81 (265)
T COG5494          11 MEVKIFTH-----KTCVSSYMLFEYLENKGLLGKVKIIDAELPPF--LAFEK--GVISVPSVFIDGELVYADPVDPEEIE   81 (265)
T ss_pred             eEEEEEEe-----cchHHHHHHHHHHHhcCCCCCceEEEcCCChH--HHhhc--ceeecceEEEcCeEEEcCCCCHHHHH
Confidence            45778987     4699999999999998864  44455443332  23332  45689999999998754    45555


Q ss_pred             HHH
Q 030914          148 NMH  150 (169)
Q Consensus       148 ~~~  150 (169)
                      .+.
T Consensus        82 s~~   84 (265)
T COG5494          82 SIL   84 (265)
T ss_pred             HHH
Confidence            554

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=87.54  E-value=8.3  Score=28.30  Aligned_cols=80  Identities=16%  Similarity=0.285  Sum_probs=48.4

Q ss_pred             CeEEEeecCCC-CCCCccHHHHHH-HHhcCC---CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeeccHHHH
Q 030914           75 PVMLYMKGVPE-FPQCGFSSLAVR-VLGAYN---VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGSDIIL  147 (169)
Q Consensus        75 ~Vvly~k~~~~-~~~C~~c~~a~~-~L~~~~---v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~d~l~  147 (169)
                      ..++|..|.|. .|-+..-.-+.. +.++++   +.+-.+|++.++++    ....|-.++|.+  |-||+.+|-..-. 
T Consensus        36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~L----A~~fgV~siPTLl~FkdGk~v~~i~G~-  110 (132)
T PRK11509         36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAI----GDRFGVFRFPATLVFTGGNYRGVLNGI-  110 (132)
T ss_pred             cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHH----HHHcCCccCCEEEEEECCEEEEEEeCc-
Confidence            57788888773 344444444443 233433   66888899888765    444577888887  6699988755322 


Q ss_pred             HHHhcccHHHHHhc
Q 030914          148 NMHQSGELKEKLKG  161 (169)
Q Consensus       148 ~~~~~g~L~~~L~~  161 (169)
                        ....+|.++++.
T Consensus       111 --~~k~~l~~~I~~  122 (132)
T PRK11509        111 --HPWAELINLMRG  122 (132)
T ss_pred             --CCHHHHHHHHHH
Confidence              122445555543

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=87.44  E-value=0.46  Score=33.29  Aligned_cols=101  Identities=17%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|..++++.++|.++|+.|.. |+..++-+             .+.+.+.++..-..-.-+|=.++            
T Consensus         3 ~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s-------------~~el~~~l~~~~~~~~~lin~~~------------   57 (110)
T PF03960_consen    3 NPNCSTCRKALKWLEENGIEYEFIDYKKEPLS-------------REELRELLSKLGNGPDDLINTRS------------   57 (110)
T ss_dssp             -TT-HHHHHHHHHHHHTT--EEEEETTTS----------------HHHHHHHHHHHTSSGGGGB-TTS------------
T ss_pred             CCCCHHHHHHHHHHHHcCCCeEeehhhhCCCC-------------HHHHHHHHHHhcccHHHHhcCcc------------
Confidence            48999999999999999999988 88876532             23333333333211111111121            


Q ss_pred             HHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           95 AVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                        ...++++ .... +-..++++.+.|.+...--.-|.|.-+++.+-|+++
T Consensus        58 --~~~k~l~-~~~~-~~~s~~e~i~~l~~~p~LikRPIi~~~~~~~iG~~~  104 (110)
T PF03960_consen   58 --KTYKELG-KLKK-DDLSDEELIELLLENPKLIKRPIIVDGKKAVIGFNE  104 (110)
T ss_dssp             --HHHHHTT-HHHC-TTSBHHHHHHHHHHSGGGB-SSEEEETTEEEESSSG
T ss_pred             --chHhhhh-hhhh-hhhhhHHHHHHHHhChhheeCCEEEECCEEEEeCCH
Confidence              1222333 0100 111345555666554444456999999999888763

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>PRK10329 glutaredoxin-like protein; Provisional

Probab=87.13  E-value=0.54  Score=31.29  Aligned_cols=30  Identities=10%  Similarity=0.255  Sum_probs=26.2

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|+++.++-+.|.+.|++|.. |+..|++
T Consensus         8 ~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~   38 (81)
T PRK10329          8 RNDCVQCHATKRAMESRGFDFEMINVDRVPE   38 (81)
T ss_pred             CCCCHhHHHHHHHHHHCCCceEEEECCCCHH
Confidence            48899999999999999999988 8887654

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=86.79  E-value=5.5  Score=28.53  Aligned_cols=70  Identities=11%  Similarity=0.121  Sum_probs=43.3

Q ss_pred             HHHHHhhcCCe--EEEeecCCCCCCCc---cHHHHHHHHhcC--CCCeEEEEcCCCHH-HHHHHHHhcCCC--CCcEE--
Q 030914           66 VVEQDVKENPV--MLYMKGVPEFPQCG---FSSLAVRVLGAY--NVPISARNILEDPE-LKSAVKAFSHWP--TFPQI--  133 (169)
Q Consensus        66 ~i~~~~~~~~V--vly~k~~~~~~~C~---~c~~a~~~L~~~--~v~~~~~di~~~~~-~~~~l~~~~g~~--t~P~v--  133 (169)
                      -+++.++.++.  |.|....   |||+   +|.+.-.-+...  .|.+-.+|++...+ ....|.+..|-.  .+|.|  
T Consensus        10 nF~~~v~~~~~vlV~F~A~~---Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~l   86 (116)
T cd03007          10 TFYKVIPKFKYSLVKFDTAY---PYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYL   86 (116)
T ss_pred             hHHHHHhcCCcEEEEEeCCC---CCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEE
Confidence            44556676664  3444433   8999   888887655432  37778888853221 224566666766  89987  


Q ss_pred             EeCCe
Q 030914          134 FIKGE  138 (169)
Q Consensus       134 fi~g~  138 (169)
                      |.+|.
T Consensus        87 F~~g~   91 (116)
T cd03007          87 FHGGD   91 (116)
T ss_pred             EeCCC
Confidence            66773

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=86.78  E-value=3.6  Score=31.13  Aligned_cols=41  Identities=17%  Similarity=0.157  Sum_probs=26.9

Q ss_pred             HhhcCCeEEEeecCCCCCCCccHHH-------HHHHHhcCCCCeEEEEcCCC
Q 030914           70 DVKENPVMLYMKGVPEFPQCGFSSL-------AVRVLGAYNVPISARNILED  114 (169)
Q Consensus        70 ~~~~~~Vvly~k~~~~~~~C~~c~~-------a~~~L~~~~v~~~~~di~~~  114 (169)
                      .....-|.+|...    .|||.|+.       .-+.+++.+-+++.+-|+.|
T Consensus        30 ~l~gKvV~lyFsA----~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D   77 (157)
T KOG2501|consen   30 ALQGKVVGLYFSA----HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD   77 (157)
T ss_pred             hhCCcEEEEEEEE----EECCchhhCCchHHHHHHHHHhcCCceEEEEEecC
Confidence            3444556677654    69999994       33344555667888888764

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=86.72  E-value=0.59  Score=32.62  Aligned_cols=24  Identities=17%  Similarity=0.457  Sum_probs=15.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~  101 (169)
                      +.++|+.-+    ++|+.|......|..
T Consensus        21 k~~vl~F~~----~~C~~C~~~~~~l~~   44 (123)
T cd03011          21 KPVLVYFWA----TWCPVCRFTSPTVNQ   44 (123)
T ss_pred             CEEEEEEEC----CcChhhhhhChHHHH
Confidence            445544443    699999988766643

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.69  E-value=2.9  Score=31.86  Aligned_cols=74  Identities=8%  Similarity=0.031  Sum_probs=40.5

Q ss_pred             HHHHHHHHhhcCC--eEEEeecCCCCCCCccHHHHHHHHhcC-C--------CCeEEEEcCCC---------H---HHHH
Q 030914           63 LKEVVEQDVKENP--VMLYMKGVPEFPQCGFSSLAVRVLGAY-N--------VPISARNILED---------P---ELKS  119 (169)
Q Consensus        63 ~~~~i~~~~~~~~--Vvly~k~~~~~~~C~~c~~a~~~L~~~-~--------v~~~~~di~~~---------~---~~~~  119 (169)
                      +.+-.+.+...++  ++||..     +.|++|.+.++-+... .        ...-++++...         .   .-.+
T Consensus        31 ~~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~  105 (182)
T COG2143          31 VFDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTE  105 (182)
T ss_pred             hHHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHH
Confidence            3444445554445  556666     7899999988754322 1        12233444321         1   1133


Q ss_pred             HHHHhcCCCCCcEEE-eCC--eEee
Q 030914          120 AVKAFSHWPTFPQIF-IKG--EFIG  141 (169)
Q Consensus       120 ~l~~~~g~~t~P~vf-i~g--~~iG  141 (169)
                      +|.+..+.+++|.++ .|+  +.|+
T Consensus       106 ELa~kf~vrstPtfvFfdk~Gk~Il  130 (182)
T COG2143         106 ELAQKFAVRSTPTFVFFDKTGKTIL  130 (182)
T ss_pred             HHHHHhccccCceEEEEcCCCCEEE
Confidence            566667778888874 444  4444

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=86.54  E-value=1  Score=30.87  Aligned_cols=52  Identities=15%  Similarity=0.275  Sum_probs=34.5

Q ss_pred             hhhhccCCCC---CCCCcchHHHHHHHHhCCCCccc-cc--CCCccccCCCCCccccc
Q 030914            6 SNLIFKGIAS---YPSARSSRIVSGSLYHNGMKYST-DV--PNDPDTHEDFRPTSKVD   57 (169)
Q Consensus         6 ~~~~~kg~~~---~p~cgfs~~~~~~l~~~g~~~~s-~v--l~d~~~~~~~k~~s~~p   57 (169)
                      .-||+|..+.   ..-|.||+++.-.|.+.|++|.. ++  .+.++....+-|+...|
T Consensus         6 ~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~g~vP   63 (91)
T cd03061           6 IELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPGTQPP   63 (91)
T ss_pred             EEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCCCCCC
Confidence            3477776655   45599999999999999999876 33  34444444444444444

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>PHA03050 glutaredoxin; Provisional

Probab=85.78  E-value=0.29  Score=34.54  Aligned_cols=26  Identities=15%  Similarity=0.130  Sum_probs=21.4

Q ss_pred             CCCcchHHHHHHHHhCCC---Cccc-ccCC
Q 030914           17 PSARSSRIVSGSLYHNGM---KYST-DVPN   42 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~---~~~s-~vl~   42 (169)
                      |.|+|+.++.+.|+++++   +|.. ++..
T Consensus        21 ~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~   50 (108)
T PHA03050         21 FTCPFCRNALDILNKFSFKRGAYEIVDIKE   50 (108)
T ss_pred             CCChHHHHHHHHHHHcCCCcCCcEEEECCC
Confidence            669999999999999998   5655 6654

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=85.16  E-value=2.2  Score=27.82  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=31.1

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEE--eCCe
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNIL-EDPELKSAVKAFSHWPTFPQIF--IKGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vf--i~g~  138 (169)
                      ++||+|..+...|.+.      .+.+..+|+. .++.....+..  ....+|.+.  .+|.
T Consensus        42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~  100 (127)
T COG0526          42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK  100 (127)
T ss_pred             CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence            6999999987766433      3667778886 56666555543  123335544  4554

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=84.45  E-value=1.7  Score=37.14  Aligned_cols=53  Identities=17%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ...|+|+...    +||++|+.....+.+.         ++.+-.+|++.++-.     . .+-..+|.+++
T Consensus       364 ~~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~~~-----~-~~i~~~Pt~~~  425 (462)
T TIGR01130       364 TKDVLVEFYA----PWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATANDVP-----P-FEVEGFPTIKF  425 (462)
T ss_pred             CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCccC-----C-CCccccCEEEE
Confidence            3445555443    7999999877666431         455677787755321     1 34578898865

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=84.04  E-value=3.2  Score=31.64  Aligned_cols=61  Identities=21%  Similarity=0.329  Sum_probs=28.2

Q ss_pred             ccccCCcccHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH----------HHhcCCCCeEEEEcCCCHHHHHHHH
Q 030914           54 SKVDASGLSLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR----------VLGAYNVPISARNILEDPELKSAVK  122 (169)
Q Consensus        54 s~~pt~~~~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~----------~L~~~~v~~~~~di~~~~~~~~~l~  122 (169)
                      -+|..-.   ++.++..-++++ |+|... +   .+|.+|..+.+          +|++.=|+ ..+|-++.|++...+.
T Consensus        20 V~W~~w~---~ea~~~Ak~e~KpIfl~ig-~---~~C~wChvM~~esf~d~eVa~~lN~~FI~-VkvDree~Pdid~~y~   91 (163)
T PF03190_consen   20 VNWQPWG---EEALEKAKKENKPIFLSIG-Y---SWCHWCHVMERESFSDPEVAEYLNRNFIP-VKVDREERPDIDKIYM   91 (163)
T ss_dssp             S--B-SS---HHHHHHHHHHT--EEEEEE-----TT-HHHHHHHHHTTT-HHHHHHHHHH-EE-EEEETTT-HHHHHHHH
T ss_pred             CCcccCC---HHHHHHHHhcCCcEEEEEE-e---cCCcchhhhcccCcCCHHHHHHHhCCEEE-EEeccccCccHHHHHH
Confidence            3454433   344555555555 444443 3   68999996553          34333232 2356666677655443

; PDB: 3IRA_A.

>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.03  E-value=5.9  Score=27.48  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=43.5

Q ss_pred             cCCeEEEeecCCCCCCCccH------HHHHHHHhcC--------CCCeEEEEcCCCH--HHHHHHHH--hcCCCCCcEEE
Q 030914           73 ENPVMLYMKGVPEFPQCGFS------SLAVRVLGAY--------NVPISARNILEDP--ELKSAVKA--FSHWPTFPQIF  134 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c------~~a~~~L~~~--------~v~~~~~di~~~~--~~~~~l~~--~~g~~t~P~vf  134 (169)
                      ...+++|+..+    -|.-|      +....+|+..        ...|+++||...+  +.-.++.+  ...---+|.|.
T Consensus         4 ~~~l~VyGae~----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPliv   79 (106)
T COG4837           4 EAKLVVYGAEV----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIV   79 (106)
T ss_pred             eeEEEEecchh----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEE
Confidence            34567777653    45555      4555666432        2347889996432  22222222  23456789999


Q ss_pred             eCCeEee-ccHHHHHHH
Q 030914          135 IKGEFIG-GSDIILNMH  150 (169)
Q Consensus       135 i~g~~iG-G~d~l~~~~  150 (169)
                      ++|+.|+ |.-.++..+
T Consensus        80 vedeiVaeGnprlKdiy   96 (106)
T COG4837          80 VEDEIVAEGNPRLKDIY   96 (106)
T ss_pred             EcceEeecCCchHHHHH
Confidence            9999997 665555543

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=83.60  E-value=1.3  Score=31.70  Aligned_cols=57  Identities=14%  Similarity=0.181  Sum_probs=36.2

Q ss_pred             HHHHHHHhcCCCCeEEEE-cCCCHHHHHHHH------HhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           93 SLAVRVLGAYNVPISARN-ILEDPELKSAVK------AFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        93 ~~a~~~L~~~~v~~~~~d-i~~~~~~~~~l~------~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+..++.+.|++...++ ...++..++.++      ...|-..+|.++|||+.+-|.+....+
T Consensus        86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l  149 (154)
T cd03023          86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTL  149 (154)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHH
Confidence            356677788888754321 112333333332      234778899999999999998765544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=83.55  E-value=7.1  Score=28.39  Aligned_cols=57  Identities=11%  Similarity=0.056  Sum_probs=32.0

Q ss_pred             hcCCeEEEeecCCCCCCCccHHH-------HHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSL-------AVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~-------a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      +.+.++|+.-.+   -+||.|..       ..+-+...|+.+..+.++....+++.+++. + .++|.+
T Consensus        29 ~gk~~ll~f~~~---~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~-~-~~~~~l   92 (154)
T PRK09437         29 QGQRVLVYFYPK---AMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKE-L-LNFTLL   92 (154)
T ss_pred             CCCCEEEEEECC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCCeEE
Confidence            445666665432   36888864       333445567777777766555555555444 2 345544

>PHA03075 glutaredoxin-like protein; Provisional

Probab=83.32  E-value=1.3  Score=31.81  Aligned_cols=34  Identities=24%  Similarity=0.375  Sum_probs=26.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEE--EEcC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISA--RNIL  112 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~--~di~  112 (169)
                      ..+++|+|     |.|+-|+-+-++|.+..=+|+.  +||.
T Consensus         3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~ilrVNIl   38 (123)
T PHA03075          3 KTLILFGK-----PLCSVCESISEALKELEDEYDILRVNIL   38 (123)
T ss_pred             ceEEEeCC-----cccHHHHHHHHHHHHhhccccEEEEEee
Confidence            45789999     8999999999999877656654  4443

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=81.54  E-value=2.4  Score=31.89  Aligned_cols=57  Identities=21%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             HHHHHHhcCCCCeEEE-EcCCCHHHHHHHHH------hcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           94 LAVRVLGAYNVPISAR-NILEDPELKSAVKA------FSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        94 ~a~~~L~~~~v~~~~~-di~~~~~~~~~l~~------~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ...+++.+.|++.+.+ ....++++++.+.+      ..|-..+|.++|||+.+-|.|.+..+.
T Consensus       125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~gvPtfvv~g~~~~G~~~l~~~~  188 (192)
T cd03022         125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARGVFGVPTFVVDGEMFWGQDRLDMLE  188 (192)
T ss_pred             HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcCCCcCCeEEECCeeecccccHHHHH
Confidence            4566788888865322 12234445444433      247889999999999999988776543

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=81.35  E-value=11  Score=26.67  Aligned_cols=55  Identities=13%  Similarity=0.081  Sum_probs=29.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHH-------HHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVR-------VLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQ  132 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~-------~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~  132 (169)
                      .+.++|+.-.+   .+||.|.....       -+.+.++.+..+.++....+++.+++. + ..+|.
T Consensus        23 gk~~ll~f~~~---~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~-~-~~~~~   84 (140)
T cd03017          23 GKPVVLYFYPK---DDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKY-G-LPFPL   84 (140)
T ss_pred             CCcEEEEEeCC---CCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHh-C-CCceE
Confidence            44555554311   47999975333       334456766666666555555555443 2 34553

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=80.92  E-value=1.2  Score=31.85  Aligned_cols=32  Identities=13%  Similarity=0.316  Sum_probs=21.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----CC-CCeEEEEc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN-VPISARNI  111 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~-v~~~~~di  111 (169)
                      .|++|+.     +.||||++.-..+..    .| +.+..+++
T Consensus         8 ~i~~f~D-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~   44 (154)
T cd03023           8 TIVEFFD-----YNCGYCKKLAPELEKLLKEDPDVRVVFKEF   44 (154)
T ss_pred             EEEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence            4667776     899999988776544    22 45555555

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space

Probab=80.90  E-value=8.6  Score=25.01  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=42.1

Q ss_pred             CccHHHHHHHHhcCCCC---eEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           89 CGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        89 C~~c~~a~~~L~~~~v~---~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      -+.|-.+..+|+-.+.+   |+.+... ++.       ++....+|.+.. +|+.|.|+.++.+.
T Consensus        14 d~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~y   70 (72)
T PF10568_consen   14 DPECLAVIAYLKFAGAPEQQFKVVPSN-NPW-------LSPTGELPALIDSGGTWVSGFRNIVEY   70 (72)
T ss_pred             CHHHHHHHHHHHhCCCCCceEEEEEcC-CCC-------cCCCCCCCEEEECCCcEEECHHHHHHh
Confidence            57899999999999999   6666553 222       345568999999 99999999988765

In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane

>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG

Probab=80.84  E-value=5.7  Score=27.50  Aligned_cols=64  Identities=20%  Similarity=0.332  Sum_probs=40.0

Q ss_pred             CCccHHHHHHHHhcCCC--CeEEEEcCCCHHHHHHHHH--hc--CCCCCcEEEeCCe-EeeccHHHHHHHhc
Q 030914           88 QCGFSSLAVRVLGAYNV--PISARNILEDPELKSAVKA--FS--HWPTFPQIFIKGE-FIGGSDIILNMHQS  152 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v--~~~~~di~~~~~~~~~l~~--~~--g~~t~P~vfi~g~-~iGG~d~l~~~~~~  152 (169)
                      .||+|....+.+....-  .++.+++...+.. +.+..  .+  ...+.-.+.-+|+ ...|.|-+..+...
T Consensus         6 ~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~   76 (114)
T PF04134_consen    6 DCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ-ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR   76 (114)
T ss_pred             CCHhHHHHHHHHHhcCCCCCEEEEECCChhhh-hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence            69999999999998864  5778888433321 11111  11  1233444433776 88888887776554

Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=80.01  E-value=0.58  Score=30.98  Aligned_cols=29  Identities=10%  Similarity=0.131  Sum_probs=23.8

Q ss_pred             CCCCcchHHHHHHHHh-----CCCCccc-ccCCCc
Q 030914           16 YPSARSSRIVSGSLYH-----NGMKYST-DVPNDP   44 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~-----~g~~~~s-~vl~d~   44 (169)
                      .|.|+++.++.+.|.+     .+++|.. |+..++
T Consensus         8 ~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~   42 (85)
T PRK11200          8 RPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG   42 (85)
T ss_pred             CCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh
Confidence            3679999999999999     7888877 887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	169
2wul_A	118	Crystal Structure Of The Human Glutaredoxin 5 With		3e-25
1yka_A	115	Solution Structure Of Grx4, A Monothiol Glutaredoxi		3e-25
2wci_A	135	Structure Of E. Coli Monothiol Glutaredoxin Grx4 Ho		4e-25
3gx8_A	121	Structural And Biochemical Characterization Of Yeas		1e-24
2lku_A	109	Solution Structure Of Reduced Poplar Apo Grxs14 Len		5e-24
3ipz_A	109	Crystal Structure Of Arabidopsis Monothiol Glutared		2e-23
3zyw_A	111	Crystal Structure Of The First Glutaredoxin Domain		2e-19
2yan_A	105	Crystal Structure Of The Second Glutaredoxin Domain		2e-18
1wik_A	109	Solution Structure Of The Picot Homology 2 Domain O		1e-17
3fz9_A	112	Crystal Structure Of Poplar Glutaredoxin S12 In Com		6e-05
2e7p_A	116	Crystal Structure Of The Holo Form Of Glutaredoxin		9e-05
1b4q_A	105	Solution Structure Of Human Thioltransferase Comple		1e-04
1z7p_A	117	Solution Structure Of Reduced Glutaredoxin C1 From		2e-04
1jhb_A	106	Human Glutaredoxin In Fully Reduced Form, Nmr, 20 S		4e-04
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		6e-04
2ht9_A	146	The Structure Of Dimeric Human Glutaredoxin 2 Lengt		7e-04

>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound Glutathione In An Fes Cluster Length = 118

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 72/94 (76%), Gaps = 1/94 (1%)
Query: 71  VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPT 129
           VK++ V++++KG PE PQCGFS+  V++L  + V   +A N+L+DPEL+  +K +S+WPT
Sbjct: 17  VKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPT 76
Query: 130 FPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIA 163
            PQ+++ GEF+GG DI+L MHQ+G+L E+LK + 
Sbjct: 77  IPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110

>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From E. Coli Length = 115

Iteration: 1
 Score =  110 bits (276), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 76/105 (72%)
Query: 65  EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
           E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A     +  +IL++P++++ +  +
Sbjct: 6   EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 65
Query: 125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
           ++WPTFPQ+++ GE +GG DI++ M+Q GEL++ +K  A+  KS+
Sbjct: 66  ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 110

>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer Length = 135

Iteration: 1
 Score =  110 bits (275), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 76/105 (72%)
Query: 65  EVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF 124
           E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A     +  +IL++P++++ +  +
Sbjct: 26  EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKY 85
Query: 125 SHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKSD 169
           ++WPTFPQ+++ GE +GG DI++ M+Q GEL++ +K  A+  KS+
Sbjct: 86  ANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKSE 130

>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast Monothiol Glutaredoxin Grx5 Length = 121

Iteration: 1
 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 63  LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILEDPELKS 119
           +++ +E  ++  PV+L+MKG PEFP+CGFS   + +LG   V     +A N+LEDPEL+ 
Sbjct: 5   IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELRE 64
Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
            +K FS WPT PQ+++  EFIGG D+I +M +SGEL + L+
Sbjct: 65  GIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLE 105

>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14 Length = 109

Iteration: 1
 Score =  107 bits (266), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 45/99 (45%), Positives = 70/99 (70%)
Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
           +LK  +++ V  + V+L+MKG  +FPQCGFS   V++L + N P  + NILE+  L+  +
Sbjct: 6   ALKTTLDKVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNILENELLRQGL 65
Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           K +S WPTFPQ++I GEF GG DI +  ++SGEL+E+++
Sbjct: 66  KEYSSWPTFPQLYIDGEFFGGCDITVEAYKSGELQEQVE 104

>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin Atgr Length = 109

Iteration: 1
 Score =  105 bits (261), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 46/99 (46%), Positives = 68/99 (68%)
Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
            LK+ +E+ V    V+L+MKG  +FP CGFS+  V++L   NVP    NILE+  L+  +
Sbjct: 6   QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGL 65
Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           K +S+WPTFPQ++I GEF GG DI L   ++GEL+E+++
Sbjct: 66  KEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVE 104

>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of Human Glutaredoxin 3 (Glrx3) Length = 111

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 57/91 (62%)
Query: 75  PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134
           P ML+MKG P+ P+CGFS   V +L  +N+  S+ +I  D E++  +KA+S WPT+PQ++
Sbjct: 17  PCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLY 76
Query: 135 IKGEFIGGSDIILNMHQSGELKEKLKGIASN 165
           + GE IGG DII  +  S EL       A N
Sbjct: 77  VSGELIGGLDIIKELEASEELDTICPKAAEN 107

>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of Human Txnl2 Length = 105

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 59/86 (68%)
Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           VML+MKG  +  +CGFS   + +L +  V     +ILED E++  +KA+S+WPT+PQ+++
Sbjct: 19  VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYV 78
Query: 136 KGEFIGGSDIILNMHQSGELKEKLKG 161
           KGE +GG DI+  + ++GEL   L+G
Sbjct: 79  KGELVGGLDIVKELKENGELLPILRG 104

>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The Mouse Pkc-Interacting Cousin Of Thioredoxin Protein Length = 109

Iteration: 1
 Score = 85.5 bits (210), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/86 (41%), Positives = 57/86 (66%)
Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           VML+MKG  +  +CGFS   + +L +  V     +ILED E++  +K FS+WPT+PQ+++
Sbjct: 17  VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYV 76
Query: 136 KGEFIGGSDIILNMHQSGELKEKLKG 161
           +G+ +GG DI+  +  +GEL   LKG
Sbjct: 77  RGDLVGGLDIVKELKDNGELLPILKG 102

>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex With Glutathione Length = 112

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 60  GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DP 115
           G  L++ V++ V ENPV++Y K       C +SS    +    NV      + E     P
Sbjct: 4   GSRLEDAVKKTVAENPVVVYSK-----TWCSYSSEVKSLFKRLNVDPLVVELDELGAQGP 58
Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELK 156
           +++  ++  +   T P +FI G+ IGG    + +++ GEL+
Sbjct: 59  QIQKVLERLTGQHTVPNVFIGGKHIGGCTDTVKLYRKGELE 99

>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 116

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 16/101 (15%)
Query: 75  PVMLYMKGVPEFPQCGFSS----LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP-- 128
           PV+++ K       CG+ +    L  +V  +Y V +    + +  +L+SA    +HW   
Sbjct: 21  PVVVFSK-----TYCGYCNRVKQLLTQVGASYKV-VELDELSDGSQLQSA---LAHWTGR 71
Query: 129 -TFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKS 168
            T P +FI G+ IGG D ++  HQ  EL   L+  A+  K+
Sbjct: 72  GTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAATAKT 112

>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With Glutathione Length = 105

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYN--------VPISARNILEDP 115
           +E V   ++   V++++K     P C +S  A  +L            V I+A N     
Sbjct: 2   QEFVNSKIQPGKVVVFIK-----PTCPYSRRAQEILSQLPIKQGLLEFVDITATN--HTN 54
Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
           E++  ++  +   T P++FI  + IGGS  ++++ QSGEL  +LK I + Q
Sbjct: 55  EIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGALQ 105

>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 117

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 10/98 (10%)
Query: 75  PVMLYMKGVPEFPQCGFSS----LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTF 130
           PV+++ K       CG+ +    L  +V  +Y V +    + +  +L+SA+  ++   T 
Sbjct: 22  PVVVFSK-----TYCGYCNRVKQLLTQVGASYKV-VELDELSDGSQLQSALAHWTGRGTV 75
Query: 131 PQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQKS 168
           P +FI G+ IGG D ++  HQ  EL   L+  A+  K+
Sbjct: 76  PNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAATAKN 113

>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20 Structures Length = 106

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCG-----FSSLAVRVLGAYNVPISARNILEDPELK 118
           +E V   ++   V++++K  P  P C       S L ++      V I+A N     E++
Sbjct: 3   QEFVNCKIQPGKVVVFIK--PTCPYCRRAQEILSQLPIKQGLLEFVDITATN--HTNEIQ 58
Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQ 166
             ++  +   T P++FI  + IGG   ++++ QSGEL  +LK I + Q
Sbjct: 59  DYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGALQ 106

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           V++Y +     P C + + A  +L       +  +    PEL++ ++  S   TFPQIFI
Sbjct: 8   VIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFI 62
Query: 136 KGEFIGGSDIILNMHQSGELKEKLK 160
               +GG D +  +   G+L   LK
Sbjct: 63  GSVHVGGCDDLYALEDEGKLDSLLK 87

>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2 Length = 146

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 67  VEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV--PISARNILE-DPELKSAVKA 123
           +++ + +N V+++ K       C + ++A ++    NV   +   ++LE   + + A+  
Sbjct: 42  IQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 96
Query: 124 FSHWPTFPQIFIKGEFIGGSDIILNMHQSGEL 155
            +   T P+IF+ G FIGG+     +H+ G+L
Sbjct: 97  MTGERTVPRIFVNGTFIGGATDTHRLHKEGKL 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	3e-54
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	1e-53
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	1e-53
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	2e-53
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	3e-53
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	9e-53
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	3e-51
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-31
1kte_A	105	Thioltransferase; redox-active center, electron tr	6e-23
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	1e-22
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	4e-22
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	2e-18
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	2e-18
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	2e-17
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	2e-17
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	3e-17
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	1e-16
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	2e-16
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	2e-16
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	5e-16
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	3e-14
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	3e-12
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	3e-11
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	7e-09
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	2e-08
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	2e-08
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	3e-08
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	3e-08
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	1e-07
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	1e-06
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	3e-06
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	6e-05

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score =  167 bits (424), Expect = 3e-54
 Identities = 45/127 (35%), Positives = 80/127 (62%), Gaps = 2/127 (1%)

Query: 45  DTHEDFRPTSKVDASGL--SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY 102
             H     +  V       +  E +++ + ENP++LYMKG P+ P CGFS+ AV+ L A 
Sbjct: 4   SHHHHHHSSGLVPRGSHMSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAAC 63

Query: 103 NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 162
               +  +IL++P++++ +  +++WPTFPQ+++ GE +GG DI++ M+Q GEL++ +K  
Sbjct: 64  GERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKET 123

Query: 163 ASNQKSD 169
           A+  KS+
Sbjct: 124 AAKYKSE 130

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score =  164 bits (418), Expect = 1e-53
 Identities = 46/99 (46%), Positives = 68/99 (68%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
            LK+ +E+ V    V+L+MKG  +FP CGFS+  V++L   NVP    NILE+  L+  +
Sbjct: 6   QLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGL 65

Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           K +S+WPTFPQ++I GEF GG DI L   ++GEL+E+++
Sbjct: 66  KEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVE 104

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score =  164 bits (418), Expect = 1e-53
 Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 60  GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKS 119
           G S    ++    +  VML+MKG  +  +CGFS   + +L +  V     +ILED E++ 
Sbjct: 1   GSSGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQ 60

Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL--KGIAS 164
            +K FS+WPT+PQ++++G+ +GG DI+  +  +GEL   L  +   S
Sbjct: 61  GLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKGESGPS 107

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score =  164 bits (417), Expect = 2e-53
 Identities = 39/100 (39%), Positives = 65/100 (65%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
            L+E ++    +  VML+MKG  +  +CGFS   + +L +  V     +ILED E++  +
Sbjct: 5   KLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGL 64

Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKG 161
           KA+S+WPT+PQ+++KGE +GG DI+  + ++GEL   L+G
Sbjct: 65  KAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRG 104

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score =  163 bits (416), Expect = 3e-53
 Identities = 41/106 (38%), Positives = 61/106 (57%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAV 121
            L   +++     P ML+MKG P+ P+CGFS   V +L  +N+  S+ +I  D E++  +
Sbjct: 4   DLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGL 63

Query: 122 KAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASNQK 167
           KA+S WPT+PQ+++ GE IGG DII  +  S EL       A N  
Sbjct: 64  KAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAAENLY 109

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} Length = 121

 Score =  159 bits (404), Expect = 3e-51
 Identities = 47/112 (41%), Positives = 72/112 (64%), Gaps = 5/112 (4%)

Query: 63  LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV---PISARNILEDPELKS 119
           +++ +E  ++  PV+L+MKG PEFP+CGFS   + +LG   V     +A N+LEDPEL+ 
Sbjct: 5   IRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELRE 64

Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKL--KGIASNQKSD 169
            +K FS WPT PQ+++  EFIGG D+I +M +SGEL + L        ++ +
Sbjct: 65  GIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEAQALVPEEEE 116

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score =  108 bits (273), Expect = 1e-31
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELK 118
           +  +  ++     PV+++ K       CG+ +   ++L           + E     +L+
Sbjct: 8   AALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQ 62

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           SA+  ++   T P +FI G+ IGG D ++  HQ  EL   L+
Sbjct: 63  SALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQ 104

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 86.5 bits (215), Expect = 6e-23
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE------DPEL 117
           +  V   ++   V++++K     P C F      +L            ++        E+
Sbjct: 2   QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56

Query: 118 KSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 162
           +  ++  +   T P++FI  E IGG   + +MH+ GEL  +L+ +
Sbjct: 57  QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQV 101

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 85.8 bits (213), Expect = 1e-22
 Identities = 28/110 (25%), Positives = 53/110 (48%), Gaps = 12/110 (10%)

Query: 63  LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA-YNVPISARNILE------DP 115
             + V+  + EN + +  K       C +   A+  L     VP S   +L+        
Sbjct: 14  TIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGA 68

Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASN 165
           ++++A+   +   T P I+I G+ IGG+D +  + ++GEL+E L+ I +N
Sbjct: 69  DIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEPILAN 118

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 84.6 bits (210), Expect = 4e-22
 Identities = 18/102 (17%), Positives = 43/102 (42%), Gaps = 8/102 (7%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI---LEDPELK 118
            L+  +   ++ + V+++ K       C  S+    +  +  V  +   +    +   ++
Sbjct: 5   ELRRHLVGLIERSRVVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQ 59

Query: 119 SAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
             +   ++  T P IF+    +GG D     +QSG L++ L+
Sbjct: 60  EVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQ 101

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 75.9 bits (187), Expect = 2e-18
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG-AYNVPISARNILE------D 114
                V+  + +  V +  K       C +    +  L    NVP S   +LE       
Sbjct: 25  ETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELDEMSNG 79

Query: 115 PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 162
            E++ A++  S   T P ++I G+ IGG+  +  + ++G+L E LK +
Sbjct: 80  SEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKPV 127

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 75.0 bits (185), Expect = 2e-18
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE------DPEL 117
           +E V+Q +  N V +++K       C F   A+ +L  ++    A  I++      + EL
Sbjct: 9   EEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENEL 63

Query: 118 KSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGI 162
           +   +  +   T P+IF     IGG   +L +     L + L  I
Sbjct: 64  RDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSI 108

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 73.6 bits (181), Expect = 2e-17
 Identities = 21/113 (18%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 51  RPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARN 110
             +S ++    +    +++ + +N V+++ K       C + ++A ++    NV      
Sbjct: 26  NTSSSLENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVE 80

Query: 111 ILEDP---ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           +       + + A+   +   T P+IF+ G FIGG+     +H+ G+L   + 
Sbjct: 81  LDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 72.8 bits (179), Expect = 2e-17
 Identities = 22/110 (20%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 62  SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE------DP 115
           ++++     +  +P++++ K       C +S     +L      I    I+E        
Sbjct: 2   NVQKEYSLILDLSPIIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKHGHGE 56

Query: 116 ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKGIASN 165
           EL+  +K  +   T P + + G   GG++ I  +H  G+L E L+  +  
Sbjct: 57  ELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVWSDG 106

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 71.9 bits (177), Expect = 3e-17
 Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 9/107 (8%)

Query: 58  ASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNI----LE 113
           + G  ++E + + V EN V++Y K       C + +    +     V      +     +
Sbjct: 3   SFGSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQ 57

Query: 114 DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
            P+L+  ++  +   T P +F+ G+ IGG    + +++ G+L+  L 
Sbjct: 58  GPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLA 104

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 70.8 bits (174), Expect = 1e-16
 Identities = 20/114 (17%), Positives = 49/114 (42%), Gaps = 8/114 (7%)

Query: 50  FRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISAR 109
              +  ++    +    +++ + +N V+++ K       C + ++A ++    NV     
Sbjct: 3   SGSSGSLENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVV 57

Query: 110 NI---LEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
            +       + + A+   +   T P+IF+ G FIGG+     +H+ G+L   + 
Sbjct: 58  ELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 69.1 bits (170), Expect = 2e-16
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           V +Y K       C +   A  +L +  V      I  +   +  +   S   T PQIFI
Sbjct: 3   VEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI 57

Query: 136 KGEFIGGSDIILNMHQSGELKEKLK 160
             + IGG D +  +   G L   LK
Sbjct: 58  DAQHIGGYDDLYALDARGGLDPLLK 82

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 74.4 bits (182), Expect = 2e-16
 Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 12/145 (8%)

Query: 30  YHNGMKYSTDVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQC 89
                  +  + +           S          + V+  + EN + +  K       C
Sbjct: 217 VLLEFVTAAGITHGMHELYKSGSGSGSGMVSQETIKHVKDLIAENEIFVASK-----TYC 271

Query: 90  GFSSLAVRVLGA-YNVPISARNILE------DPELKSAVKAFSHWPTFPQIFIKGEFIGG 142
            +S  A+  L     VP S   +L+        ++++A+   +   T P I+I G+ IGG
Sbjct: 272 PYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGG 331

Query: 143 SDIILNMHQSGELKEKLKGIASNQK 167
           +D +  + ++GEL+E L+ I +N +
Sbjct: 332 NDDLQELRETGELEELLEPILANLE 356

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 68.4 bits (168), Expect = 5e-16
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 75  PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF 134
            V++Y +     P C + + A  +L       +  +    PEL++ ++  S   TFPQIF
Sbjct: 7   DVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIF 61

Query: 135 IKGEFIGGSDIILNMHQSGELKEKLK 160
           I    +GG D +  +   G+L   LK
Sbjct: 62  IGSVHVGGCDDLYALEDEGKLDSLLK 87

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 63.8 bits (156), Expect = 3e-14
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 74  NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA-VKAFSHWPTFPQ 132
             + +Y         C F   A+ +L    V      I  D E + A     +   + PQ
Sbjct: 16  AKIEIYTW-----STCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQ 70

Query: 133 IFIKGEFIGGSDIILNMHQSGELKEKLK 160
           IFI  + IGG D I  +  +G+L   L 
Sbjct: 71  IFIDDQHIGGCDDIYALDGAGKLDPLLH 98

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 58.3 bits (142), Expect = 3e-12
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 8/90 (8%)

Query: 74  NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKS-AVKAFSHWPTFPQ 132
             ++LY +     P C +   A  +L    V  +  +      L+   V+  +   TFPQ
Sbjct: 6   KEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDA--STSLRQEMVQRANGRNTFPQ 58

Query: 133 IFIKGEFIGGSDIILNMHQSGELKEKLKGI 162
           IFI    +GG D +  +   G+L   L+ +
Sbjct: 59  IFIGDYHVGGCDDLYALENKGKLDSLLQDV 88

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 9/92 (9%)

Query: 75  PVMLY---MKGVPE-FPQCGFSSLAVRVLGAYNVPISARNILEDPELKS--AVKAFSHWP 128
            + +Y   + G  E   Q    S   R+L    +     +I +D  L+      A +   
Sbjct: 3   GLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKA 59

Query: 129 TFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           T PQI     + G  ++ +   +   L+E LK
Sbjct: 60  TPPQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 49.6 bits (119), Expect = 7e-09
 Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 17/92 (18%)

Query: 75  PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-----ISARNILEDPELKSAVKAFSHWPT 129
            V++Y         C      +  L    V      I      E  ++   V + S   +
Sbjct: 13  EVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYS 67

Query: 130 FPQIFIKGEFIGGSDIILNMHQSGELKEKLKG 161
            P +    + + G +         +LKE ++G
Sbjct: 68  VPVVVKGDKHVLGYN-------EEKLKELIRG 92

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 49.2 bits (117), Expect = 2e-08
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 8/74 (10%)

Query: 95  AVRVLGAYNVPISARNILEDPELK--------SAVKAFSHWPTFPQIFIKGEFIGGSDII 146
            VR L A  +     +I    E +           K     P  PQIF    + G  D  
Sbjct: 30  VVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYDSF 89

Query: 147 LNMHQSGELKEKLK 160
               +S  +   L 
Sbjct: 90  FESKESNTVFSFLG 103

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 48.4 bits (116), Expect = 2e-08
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 16/83 (19%)

Query: 87  PQCGFSSLAVRVLGAYNVPISARNILEDPE-------LKSAVKAFSHWPTFPQIFIKGEF 139
             C +   A +     N+      I +  +       +  + K      T PQIFI  E 
Sbjct: 12  NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEH 71

Query: 140 IGGSDIILNMHQSGELKEKLKGI 162
           IGG           ELK     I
Sbjct: 72  IGGFT---------ELKANADKI 85

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 8/101 (7%)

Query: 63  LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKS 119
             + + + V    V+L+ K       C +      VL    +  +   + +      ++ 
Sbjct: 7   TSQWLRKTVDSAAVILFSKTT-----CPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQK 61

Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
            + +FS   T PQ+F++G+FIG S  +L  + + EL   + 
Sbjct: 62  CLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVN 102

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 48.5 bits (115), Expect = 3e-08
 Identities = 12/74 (16%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 95  AVRVLGAYNVPISARNILEDPELK--------SAVKAFSHWPTFPQIFIKGEFIGGSDII 146
            +  L A  +    ++I  + E +           +  + +P  PQIF + ++ G  D  
Sbjct: 22  VLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYDAF 81

Query: 147 LNMHQSGELKEKLK 160
               ++  +   L 
Sbjct: 82  FEARENNAVYAFLG 95

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 46.1 bits (110), Expect = 1e-07
 Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 6/67 (8%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           + +Y +       C       R +          N+   PE   A++A       P +  
Sbjct: 3   ITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFR-QLPVVIA 56

Query: 136 KGEFIGG 142
                 G
Sbjct: 57  GDLSWSG 63

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           + LY K     P C   +   + L    +  +  +I  D E +  V A  +    P + +
Sbjct: 3   ITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALGYV-QAPVVEV 56

Query: 136 KGEFIGG 142
            GE   G
Sbjct: 57  DGEHWSG 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 25/193 (12%), Positives = 60/193 (31%), Gaps = 49/193 (25%)

Query: 8   LIFKGIASYPSARSSRIVSGSLYHNGMKYS------TDVPNDPD------------THED 49
            +F  + S       + V   L  N   Y             P              + D
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122

Query: 50  FRPTSKVDAS----GLSLKEVVEQDVKENPVMLY-MKGVPEFPQCGFSSLAVRVLGAYNV 104
            +  +K + S     L L++ + +      V++  + G       G + +A+ V  +Y V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------SGKTWVALDVCLSYKV 176

Query: 105 P---------ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM-HQSGE 154
                     ++ +N      +   ++   +        I   +   SD   N+  +   
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLY-------QIDPNWTSRSDHSSNIKLRIHS 229

Query: 155 LKEKLKGIASNQK 167
           ++ +L+ +  ++ 
Sbjct: 230 IQAELRRLLKSKP 242

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 12/76 (15%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVL-----GAYNVPISARNILEDPELKSAV--KAFSHWP 128
            +++ +       C +   A  +         +      +I  +   K  +  KA     
Sbjct: 3   TVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVE 57

Query: 129 TFPQIFIKGEFIGGSD 144
           T PQIF+  + IGG  
Sbjct: 58  TVPQIFVDQQHIGGYT 73

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Length = 87

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 84  PEFPQCGFSSLAVRVLGAYNVP-----ISARNILEDPE-----LKSAVKAFSHWPTFPQI 133
               +CG    A R+L     P     I     + D E     L    +      T PQ+
Sbjct: 9   SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQV 68

Query: 134 FIK-GEFIGGSDIILNMHQSGELKEKLK 160
           F   G  IGG D         +L+E  K
Sbjct: 69  FAPDGSHIGGFD---------QLREYFK 87

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Length = 241

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 48  EDFRPTSKVDASGLS--LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP 105
           E   P      S     LK +  Q   +  + ++ K     P C F + A ++L    + 
Sbjct: 142 EPNEPGDPFKVSDADTMLKYLAPQHQVQESISIFTK-----PGCPFCAKAKQLLHDKGLS 196

Query: 106 ISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD 144
                +  D  + S V+A S   T PQ+FI G+ IGGSD
Sbjct: 197 FEEIILGHDATIVS-VRAVSGRTTVPQVFIGGKHIGGSD 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	100.0
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	100.0
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	100.0
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.98
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.98
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.96
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.95
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.95
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.95
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.94
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.94
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.92
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.92
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.92
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.91
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.91
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.9
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.9
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.89
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.87
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.87
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.86
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.85
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.84
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.83
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.82
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.81
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.75
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.74
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.71
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.65
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.64
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.63
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.63
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.58
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.55
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.34
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.31
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.29
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.26
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.2
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	99.03
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.91
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.9
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.85
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.7
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	98.6
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.53
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.52
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.51
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.47
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.47
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	98.46
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	98.45
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.43
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	98.4
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.39
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.39
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.39
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.27
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	98.2
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	98.15
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	98.14
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.07
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	98.07
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.07
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	98.05
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	98.03
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.03
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	98.02
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	98.0
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	98.0
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.96
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	97.95
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.94
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	97.93
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.92
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	97.92
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.92
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	97.91
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.88
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.87
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	97.87
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	97.86
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.86
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	97.86
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.85
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.84
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.84
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.83
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	97.83
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.82
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.82
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.82
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.78
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	97.78
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.77
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	97.77
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.76
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	97.76
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	97.76
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.74
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	97.74
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	97.74
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	97.74
3lyp_A	215	Stringent starvation protein A; structural genomic	97.72
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	97.72
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.72
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	97.72
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.72
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.71
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.69
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.69
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.69
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	97.68
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.67
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.67
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	97.67
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	97.67
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.67
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	97.66
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	97.64
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	97.64
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	97.64
3lxz_A	229	Glutathione S-transferase family protein; structur	97.64
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	97.64
3lyk_A	216	Stringent starvation protein A homolog; structural	97.63
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	97.63
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	97.63
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	97.63
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	97.62
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	97.62
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	97.62
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	97.62
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	97.62
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	97.62
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	97.61
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	97.61
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.59
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.58
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	97.58
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	97.58
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.57
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.57
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.57
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.57
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	97.55
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	97.54
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	97.54
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.53
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	97.53
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	97.53
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	97.53
3n5o_A	235	Glutathione transferase; seattle structural genomi	97.52
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.52
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.52
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	97.52
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	97.52
1mek_A	120	Protein disulfide isomerase; electron transport, r	97.51
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	97.51
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.5
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	97.49
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	97.49
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	97.49
1r5a_A	218	Glutathione transferase; glutathione S-transferase	97.49
4dej_A	231	Glutathione S-transferase related protein; transfe	97.48
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	97.48
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	97.48
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.47
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.45
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	97.45
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.45
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	97.43
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	97.41
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	97.41
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	97.41
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	97.41
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.4
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	97.4
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.4
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	97.39
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	97.39
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	97.38
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	97.37
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.37
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.37
4glt_A	225	Glutathione S-transferase-like protein; structural	97.37
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	97.37
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.37
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	97.33
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.32
3niv_A	222	Glutathione S-transferase; structural genomics, PS	97.32
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	97.3
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	97.3
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	97.3
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	97.29
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	97.26
4exj_A	238	Uncharacterized protein; transferase-like protein,	97.25
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	97.22
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	97.2
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	97.2
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.18
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	97.17
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	97.16
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	97.15
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	97.13
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	97.13
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	97.13
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	96.21
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	97.12
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	97.05
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	97.04
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.03
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	97.03
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	96.99
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	96.98
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	96.98
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	96.98
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	96.93
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	96.93
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.92
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	96.91
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.88
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	96.87
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	96.87
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	96.86
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	96.86
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	96.84
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	96.82
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.79
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	95.81
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	96.77
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	96.75
4ecj_A	244	Glutathione S-transferase; transferase-like protei	96.71
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.71
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	96.67
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	96.63
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	96.62
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	96.61
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	96.59
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	96.58
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	96.57
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	96.55
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	96.54
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	96.54
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	96.53
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	96.53
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	96.51
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	96.49
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	96.47
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.47
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	96.46
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	96.45
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	96.41
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.41
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	96.4
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.38
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	96.35
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	96.35
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	96.35
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	96.31
2qsi_A	137	Putative hydrogenase expression/formation protein;	96.31
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	96.28
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	96.27
3raz_A	151	Thioredoxin-related protein; structural genomics,	96.26
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	96.2
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	96.19
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	96.19
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	96.16
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	96.15
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	96.13
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	96.11
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	96.09
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	96.07
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	96.05
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	96.04
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	95.96
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	95.89
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	95.87
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	95.76
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	95.75
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	95.74
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	95.69
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	95.67
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	95.67
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	95.64
3ira_A	173	Conserved protein; methanosarcina mazei,structural	95.61
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	95.59
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	95.57
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	95.52
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	95.46
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	95.45
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	95.35
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	95.32
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	95.31
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	95.21
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	95.08
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	94.07
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	94.99
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	94.99
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.98
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	94.93
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	94.93
3rdw_A	121	Putative arsenate reductase; structural genomics,	94.78
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	94.72
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	94.71
2lrt_A	152	Uncharacterized protein; structural genomics, thio	94.67
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	94.65
3ppu_A	352	Glutathione-S-transferase; GST fold; HET: GSH; 2.3	94.64
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	94.62
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	94.57
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	94.53
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	94.45
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	94.41
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	94.31
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	94.22
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	94.09
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	94.06
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	94.01
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	93.91
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	93.9
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	93.9
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	92.61
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	93.48
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	93.45
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	93.13
3m1g_A	362	Putative glutathione S-transferase; ECM4-like subf	93.1
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	93.05
3gkx_A	120	Putative ARSC family related protein; ARSC family	92.79
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	92.78
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	92.74
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	92.71
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	92.66
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	92.64
3ktb_A	106	Arsenical resistance operon trans-acting represso;	92.62
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	92.3
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	92.27
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	91.97
3l78_A	120	Regulatory protein SPX; transcription, transcripti	91.96
3kgk_A	110	Arsenical resistance operon trans-acting represso;	91.83
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	91.79
3fz4_A	120	Putative arsenate reductase; APC61768, structural	91.62
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	91.01
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	90.7
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	90.52
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	90.44
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	90.18
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	90.03
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	89.92
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	89.71
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	88.77
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	88.46
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	87.82
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	87.46
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	87.37
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	87.28
4evm_A	138	Thioredoxin family protein; structural genomics, n	86.88
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	86.72
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	86.5
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	86.29
2g2q_A	124	Glutaredoxin-2; thioredoxin-fold, oxidoreductase,	85.99
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	85.63
4gci_A	211	Glutathione S-transferase; GST, enzyme function in	85.59
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	84.97
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	84.77
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	84.67
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	84.34
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	84.23
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	83.97
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	83.86
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	83.47
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	83.31
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	83.27
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	83.11
3tdg_A	273	DSBG, putative uncharacterized protein; thioredoxi	83.08
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	82.95
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	82.03
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	81.36
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	81.35
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	81.06
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	80.99
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	80.88
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	80.68
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	80.57
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	80.04

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.3e-36  Score=218.79  Aligned_cols=107  Identities=44%  Similarity=0.856  Sum_probs=101.1

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCC-CeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeE
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV-PISARNILEDPELKSAVKAFSHWPTFPQIFIKGEF  139 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v-~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~  139 (169)
                      ...+++|++++++|+||||+||||+.|+||||.+|+++|+++|+ +|+++||+.++++|++|++++||+|||||||||+|
T Consensus         7 ~~~~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~   86 (118)
T 2wul_A            7 GGSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEF   86 (118)
T ss_dssp             --CHHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred             cchHHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEE
Confidence            34578999999999999999999999999999999999999999 69999999999999999999999999999999999


Q ss_pred             eeccHHHHHHHhcccHHHHHhcccccCC
Q 030914          140 IGGSDIILNMHQSGELKEKLKGIASNQK  167 (169)
Q Consensus       140 iGG~d~l~~~~~~g~L~~~L~~~~~~~~  167 (169)
                      |||+|++.+|+++|+|.++|+++|...+
T Consensus        87 IGG~Ddl~~l~~~GeL~~lL~~~Gi~~a  114 (118)
T 2wul_A           87 VGGCDILLQMHQNGDLVEELKKLGIHSA  114 (118)
T ss_dssp             EECHHHHHHHHHHTHHHHHHHHTTCCCT
T ss_pred             ECCHHHHHHHHHCCCHHHHHHHcCCccc
Confidence            9999999999999999999999887554

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=196.02  Aligned_cols=105  Identities=39%  Similarity=0.718  Sum_probs=100.7

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      ++++++|++++++++|+||+||||+.++||+|.+|+++|+++|++|+++||+.+++.+++|++++|++|+|+|||||++|
T Consensus         3 ~~~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~i   82 (111)
T 3zyw_A            3 EDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELI   82 (111)
T ss_dssp             -CHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCEEE
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHhcccHHHHHhccccc
Q 030914          141 GGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       141 GG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ||+|++.+|+++|+|.++|+.++..
T Consensus        83 GG~d~l~~l~~~G~L~~~L~~a~~~  107 (111)
T 3zyw_A           83 GGLDIIKELEASEELDTICPKAAEN  107 (111)
T ss_dssp             ECHHHHHHHHHTTCHHHHSCCCCCC
T ss_pred             ecHHHHHHHHHCCCHHHHHHhCccc
Confidence            9999999999999999999988754

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=198.93  Aligned_cols=107  Identities=44%  Similarity=0.889  Sum_probs=101.9

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC---eEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDPELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~---~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      .++.++|++++++++|+||+++||+.|+||||.+|+++|+++|++   |+++||+.+++++++|++++|++|+|||||||
T Consensus         3 ~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g   82 (121)
T 3gx8_A            3 TEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNK   82 (121)
T ss_dssp             HHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETT
T ss_pred             HHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECC
Confidence            457899999999999999999999999999999999999999999   99999999999999999999999999999999


Q ss_pred             eEeeccHHHHHHHhcccHHHHHhcccccCC
Q 030914          138 EFIGGSDIILNMHQSGELKEKLKGIASNQK  167 (169)
Q Consensus       138 ~~iGG~d~l~~~~~~g~L~~~L~~~~~~~~  167 (169)
                      ++|||+|++.+|+++|+|.++|+++++..+
T Consensus        83 ~~iGG~d~l~~l~~~G~L~~~L~~~g~~~~  112 (121)
T 3gx8_A           83 EFIGGCDVITSMARSGELADLLEEAQALVP  112 (121)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHTTCBCC
T ss_pred             EEEecHHHHHHHHHcCChHHHHHHcCCCCC
Confidence            999999999999999999999998877443

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.98  E-value=3.3e-32  Score=192.88  Aligned_cols=104  Identities=44%  Similarity=0.853  Sum_probs=100.2

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      .+++++|++++++++|+||+++||+.|+||||++|+++|+++|++|+++||+.+++.+++|++++|++++|+|||||++|
T Consensus         5 ~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~~i   84 (109)
T 3ipz_A            5 PQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFF   84 (109)
T ss_dssp             HHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTEEE
T ss_pred             HHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHhcccHHHHHhcccc
Q 030914          141 GGSDIILNMHQSGELKEKLKGIAS  164 (169)
Q Consensus       141 GG~d~l~~~~~~g~L~~~L~~~~~  164 (169)
                      ||+|++.+|+++|+|.++|+.+++
T Consensus        85 GG~d~l~~l~~~G~L~~~L~~a~~  108 (109)
T 3ipz_A           85 GGCDITLEAFKTGELQEEVEKAMC  108 (109)
T ss_dssp             ECHHHHHHHHHHSHHHHHHHHHHH
T ss_pred             eCHHHHHHHHHcCcHHHHHHHhhc
Confidence            999999999999999999998764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.96  E-value=4.9e-30  Score=188.55  Aligned_cols=106  Identities=39%  Similarity=0.850  Sum_probs=101.2

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      .++.+.|++++.+++|+||++|+|+.|+||+|.+|+++|+++|++|+++||+.+++.+++|++++|++|+|+|||||++|
T Consensus        22 ~~~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~~i  101 (135)
T 2wci_A           22 STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELV  101 (135)
T ss_dssp             CHHHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEECCEEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHhcccHHHHHhcccccC
Q 030914          141 GGSDIILNMHQSGELKEKLKGIASNQ  166 (169)
Q Consensus       141 GG~d~l~~~~~~g~L~~~L~~~~~~~  166 (169)
                      ||+|++.+|+++|+|.++|+.++++.
T Consensus       102 GG~d~l~~l~~~G~L~~~L~~~g~~~  127 (135)
T 2wci_A          102 GGCDIVIEMYQRGELQQLIKETAAKY  127 (135)
T ss_dssp             ESHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             EChHHHHHHHHCChHHHHHHHcCCCC
Confidence            99999999999999999998877643

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.95  E-value=1.7e-28  Score=173.28  Aligned_cols=102  Identities=36%  Similarity=0.704  Sum_probs=96.3

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG  141 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG  141 (169)
                      ++++.++++++.++|+||++|+|+.++||+|.+|+++|++++++|+.+||+.+++++++|++++|++++|+|||||++||
T Consensus         3 ~~~~~~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~ig   82 (109)
T 1wik_A            3 SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVG   82 (109)
T ss_dssp             SSCCCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEE
T ss_pred             hHHHHHHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEc
Confidence            34567888899999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHhcccHHHHHhccc
Q 030914          142 GSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       142 G~d~l~~~~~~g~L~~~L~~~~  163 (169)
                      |+|++.+++++|+|.++|+.+.
T Consensus        83 G~d~l~~l~~~g~L~~~L~~a~  104 (109)
T 1wik_A           83 GLDIVKELKDNGELLPILKGES  104 (109)
T ss_dssp             CHHHHHHHHHHTCSHHHHHTCC
T ss_pred             CHHHHHHHHHCCCHHHHHhccc
Confidence            9999999999999999998765

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.95  E-value=5.7e-28  Score=169.35  Aligned_cols=101  Identities=39%  Similarity=0.754  Sum_probs=96.9

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      +++.+.+++++++++|+||++|+|+.++||+|++++.+|++++++|..+||+.+++.++++++++|++++|+|||||++|
T Consensus         4 ~~~~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~~i   83 (105)
T 2yan_A            4 PKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELV   83 (105)
T ss_dssp             HHHHHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCEEE
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccHHHHHHHhcccHHHHHhc
Q 030914          141 GGSDIILNMHQSGELKEKLKG  161 (169)
Q Consensus       141 GG~d~l~~~~~~g~L~~~L~~  161 (169)
                      ||+|++.+++++|+|+++|++
T Consensus        84 gg~d~~~~l~~~g~L~~~l~~  104 (105)
T 2yan_A           84 GGLDIVKELKENGELLPILRG  104 (105)
T ss_dssp             ECHHHHHHHHHTTCHHHHHTT
T ss_pred             eChHHHHHHHHCCCHHHHhcc
Confidence            999999999999999999974

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-27  Score=173.90  Aligned_cols=99  Identities=19%  Similarity=0.322  Sum_probs=90.5

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC---CCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEe
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---NVPISARNILED---PELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +..+.+++++++++|+||++     ++||||.+|+++|++.   +++|+++||+.+   +++++++++.+|++|+|||||
T Consensus         2 ~p~~~~~~ii~~~~Vvvysk-----~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI   76 (127)
T 3l4n_A            2 NVQKEYSLILDLSPIIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLV   76 (127)
T ss_dssp             CHHHHHHHHHTSCSEEEEEC-----TTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             CHHHHHHHHHccCCEEEEEc-----CCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEE
Confidence            34677899999999999999     7899999999999985   799999999865   578889999999999999999


Q ss_pred             CCeEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          136 KGEFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       136 ~g~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ||++|||+|++.+|+++|+|.++|++++..
T Consensus        77 ~G~~IGG~ddl~~l~~~G~L~~lL~~~g~~  106 (127)
T 3l4n_A           77 NGVSRGGNEEIKKLHTQGKLLESLQVWSDG  106 (127)
T ss_dssp             TTEECCCHHHHHHHHHTTCHHHHHHHTCTT
T ss_pred             CCEEEcCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            999999999999999999999999987753

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.94  E-value=1.8e-26  Score=163.33  Aligned_cols=102  Identities=22%  Similarity=0.432  Sum_probs=91.1

Q ss_pred             cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC----HHHHHHHHHhcCCCCCcEEEe
Q 030914           60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED----PELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~----~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ...+++.+++++++++|++|++     ++||+|++++.+|++++++|+.+||+.+    +++++.+.+.+|++++|+|||
T Consensus         5 ~~~~~~~~~~~i~~~~v~vy~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi   79 (113)
T 3rhb_A            5 GSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV   79 (113)
T ss_dssp             -CHHHHHHHHHHHHSSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEEC-----CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            3567899999999999999999     7999999999999999999999999873    678888999999999999999


Q ss_pred             CCeEeeccHHHHHHHhcccHHHHHhcccccC
Q 030914          136 KGEFIGGSDIILNMHQSGELKEKLKGIASNQ  166 (169)
Q Consensus       136 ~g~~iGG~d~l~~~~~~g~L~~~L~~~~~~~  166 (169)
                      ||++|||+|++.+++++|+|.++|++++..+
T Consensus        80 ~g~~igG~~~~~~~~~~g~L~~~l~~~~~~~  110 (113)
T 3rhb_A           80 CGKHIGGCTDTVKLNRKGDLELMLAEANGKN  110 (113)
T ss_dssp             TTEEEESHHHHHHHHHHTHHHHHHTC-----
T ss_pred             CCEEEcCcHHHHHHHHcCCHHHHHHHHhhhh
Confidence            9999999999999999999999999988654

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.94  E-value=1.7e-26  Score=164.29  Aligned_cols=96  Identities=19%  Similarity=0.335  Sum_probs=89.5

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCC
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      .+..+.+++++++++|+||++     ++||+|.+|+++|+++|++|+.+||+.+   +++++++++.+|++|+|+|||||
T Consensus         4 ~~~~~~~~~~i~~~~v~vy~~-----~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~g   78 (114)
T 3h8q_A            4 EELRRHLVGLIERSRVVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNK   78 (114)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred             HHHHHHHHHHhccCCEEEEEc-----CCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEECC
Confidence            456889999999999999999     7999999999999999999999999852   56778899999999999999999


Q ss_pred             eEeeccHHHHHHHhcccHHHHHhc
Q 030914          138 EFIGGSDIILNMHQSGELKEKLKG  161 (169)
Q Consensus       138 ~~iGG~d~l~~~~~~g~L~~~L~~  161 (169)
                      ++|||+|++.+|+++|+|.++|+.
T Consensus        79 ~~igG~d~l~~l~~~G~L~~~l~~  102 (114)
T 3h8q_A           79 VHVGGCDQTFQAYQSGLLQKLLQE  102 (114)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHS
T ss_pred             EEEeCHHHHHHHHHCCCHHHHhcC
Confidence            999999999999999999999984

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.92  E-value=1.6e-24  Score=148.73  Aligned_cols=82  Identities=21%  Similarity=0.324  Sum_probs=78.2

Q ss_pred             CCeEEEeecCCCCCCCccH------HHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC--CCCCcEEEeCCeEeeccHH
Q 030914           74 NPVMLYMKGVPEFPQCGFS------SLAVRVLGAYNVPISARNILEDPELKSAVKAFSH--WPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c------~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g--~~t~P~vfi~g~~iGG~d~  145 (169)
                      .+|+||++     ++||+|      .+|+++|+++||+|+++||+.+++.+++|++.+|  ..++|+|||||++|||+|+
T Consensus         2 ~~v~ly~~-----~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d~   76 (93)
T 1t1v_A            2 SGLRVYST-----SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYEL   76 (93)
T ss_dssp             CCEEEEEC-----SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHH
T ss_pred             CCEEEEEc-----CCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHHH
Confidence            57999999     689999      9999999999999999999999999999999999  5599999999999999999


Q ss_pred             HHHHHhcccHHHHHh
Q 030914          146 ILNMHQSGELKEKLK  160 (169)
Q Consensus       146 l~~~~~~g~L~~~L~  160 (169)
                      +.+++++|+|.++|+
T Consensus        77 l~~l~~~g~L~~~l~   91 (93)
T 1t1v_A           77 FVEAVEQDTLQEFLK   91 (93)
T ss_dssp             HHHHHHTTCHHHHTT
T ss_pred             HHHHHhcCCHHHHhC
Confidence            999999999999986

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.92  E-value=1.2e-24  Score=151.46  Aligned_cols=85  Identities=28%  Similarity=0.404  Sum_probs=81.2

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ..++|+||++     ++||+|++|+++|++.+++|+++||+.+++.++++++++ |+.++|+|||||++|||+|++.+++
T Consensus        14 ~~~~v~vy~~-----~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~   88 (99)
T 3qmx_A           14 VSAKIEIYTW-----STCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALD   88 (99)
T ss_dssp             CCCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCCEEEEEc-----CCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHH
Confidence            4578999999     799999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hcccHHHHHhc
Q 030914          151 QSGELKEKLKG  161 (169)
Q Consensus       151 ~~g~L~~~L~~  161 (169)
                      ++|+|.++|+.
T Consensus        89 ~~g~L~~~L~~   99 (99)
T 3qmx_A           89 GAGKLDPLLHS   99 (99)
T ss_dssp             HTTCHHHHHTC
T ss_pred             HcCCHHHHhcC
Confidence            99999999863

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.92  E-value=1.1e-24  Score=158.64  Aligned_cols=99  Identities=21%  Similarity=0.349  Sum_probs=92.0

Q ss_pred             cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHH-HHHHhcCC---CCeEEEEcCCC---HHHHHHHHHhcCCCCCcE
Q 030914           60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLA-VRVLGAYN---VPISARNILED---PELKSAVKAFSHWPTFPQ  132 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a-~~~L~~~~---v~~~~~di~~~---~~~~~~l~~~~g~~t~P~  132 (169)
                      ..++.+.+++++.+++|++|++     ++||+|.++ +.+|++.+   ++|+.+||+.+   ++.+++|++.+|++++|+
T Consensus        23 ~~~~~~~v~~~i~~~~Vvvy~~-----~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~tVP~   97 (129)
T 3ctg_A           23 SQETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPN   97 (129)
T ss_dssp             CHHHHHHHHHHHHHSSEEEEEC-----TTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCE
T ss_pred             cHHHHHHHHHHHcCCCEEEEEC-----CCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCCCCE
Confidence            3567899999999999999999     799999999 99999999   99999999876   467889999999999999


Q ss_pred             EEeCCeEeeccHHHHHHHhcccHHHHHhccc
Q 030914          133 IFIKGEFIGGSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       133 vfi~g~~iGG~d~l~~~~~~g~L~~~L~~~~  163 (169)
                      |||||++|||+|++.+++++|+|.++|+.+.
T Consensus        98 vfi~g~~igG~d~l~~l~~~G~L~~~L~~a~  128 (129)
T 3ctg_A           98 VYINGKHIGGNSDLETLKKNGKLAEILKPVF  128 (129)
T ss_dssp             EEETTEEEESHHHHHHHHHTTHHHHHTTTTC
T ss_pred             EEECCEEEcCHHHHHHHHHCCCHHHHHHHHh
Confidence            9999999999999999999999999998764

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.91  E-value=2.1e-24  Score=154.55  Aligned_cols=99  Identities=22%  Similarity=0.391  Sum_probs=92.3

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHH-HHHHhcCC---CCeEEEEcCCCH---HHHHHHHHhcCCCCCcEE
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLA-VRVLGAYN---VPISARNILEDP---ELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a-~~~L~~~~---v~~~~~di~~~~---~~~~~l~~~~g~~t~P~v  133 (169)
                      .+..+.+++++.+++|++|++     ++||+|+++ +.+|++.+   ++|+.+||+.++   +.+++|.+.+|++++|+|
T Consensus        12 ~~~~~~~~~~i~~~~Vvvf~~-----~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tvP~v   86 (118)
T 3c1r_A           12 QETIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI   86 (118)
T ss_dssp             HHHHHHHHHHHHHSSEEEEEC-----SSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSSCEE
T ss_pred             HHHHHHHHHHHccCcEEEEEc-----CCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCcCEE
Confidence            456789999999999999999     799999999 99999999   999999998764   588899999999999999


Q ss_pred             EeCCeEeeccHHHHHHHhcccHHHHHhcccc
Q 030914          134 FIKGEFIGGSDIILNMHQSGELKEKLKGIAS  164 (169)
Q Consensus       134 fi~g~~iGG~d~l~~~~~~g~L~~~L~~~~~  164 (169)
                      ||||++|||+|++.+++++|+|+++|+.+++
T Consensus        87 fi~g~~igG~d~l~~l~~~g~L~~~L~~~g~  117 (118)
T 3c1r_A           87 YINGKHIGGNDDLQELRETGELEELLEPILA  117 (118)
T ss_dssp             EETTEEEESHHHHHHHHHHTHHHHHHHHHHC
T ss_pred             EECCEEEEcHHHHHHHHHCCcHHHHHHHcCC
Confidence            9999999999999999999999999998875

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=5.3e-24  Score=151.06  Aligned_cols=85  Identities=20%  Similarity=0.231  Sum_probs=80.4

Q ss_pred             CCeEEEeecCCCCCCCccHH------HHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc--------CCCCCcEEEeCCeE
Q 030914           74 NPVMLYMKGVPEFPQCGFSS------LAVRVLGAYNVPISARNILEDPELKSAVKAFS--------HWPTFPQIFIKGEF  139 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~------~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~--------g~~t~P~vfi~g~~  139 (169)
                      .+|+||++     ++||+|.      +|+++|++++|+|+++||+.+++.+++|++++        |++++|||||||++
T Consensus         8 m~V~vy~~-----~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~   82 (111)
T 2ct6_A            8 MVIRVFIA-----SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY   82 (111)
T ss_dssp             CCEEEEEC-----SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE
T ss_pred             cEEEEEEc-----CCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEE
Confidence            47999999     7899999      89999999999999999999999999999985        99999999999999


Q ss_pred             eeccHHHHHHHhcccHHHHHhccc
Q 030914          140 IGGSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       140 iGG~d~l~~~~~~g~L~~~L~~~~  163 (169)
                      |||+|++.+++++|+|.++|+.+.
T Consensus        83 iGG~d~l~~l~~~g~L~~~L~~~~  106 (111)
T 2ct6_A           83 CGDYDSFFESKESNTVFSFLGLKS  106 (111)
T ss_dssp             EEEHHHHHHHHTTTCHHHHHTCCS
T ss_pred             EeCHHHHHHHHHcCCHHHHHcCCC
Confidence            999999999999999999998654

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.90  E-value=1.7e-23  Score=150.62  Aligned_cols=83  Identities=18%  Similarity=0.304  Sum_probs=78.4

Q ss_pred             eEEEeecCCCCCCCccH------HHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc--------CCCCCcEEEeCCeEee
Q 030914           76 VMLYMKGVPEFPQCGFS------SLAVRVLGAYNVPISARNILEDPELKSAVKAFS--------HWPTFPQIFIKGEFIG  141 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c------~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~--------g~~t~P~vfi~g~~iG  141 (169)
                      |+||++     +.||+|      .+|+++|++.||+|+++||+.+++.|++|.+.+        |.+++|||||||++||
T Consensus         2 V~vYtt-----~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~iG   76 (121)
T 1u6t_A            2 IRVYIA-----SSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRG   76 (121)
T ss_dssp             EEEEEC-----TTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEEE
T ss_pred             EEEEec-----CCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEEe
Confidence            789998     579998      799999999999999999999999999999988        8999999999999999


Q ss_pred             ccHHHHHHHhcccHHHHHhccc
Q 030914          142 GSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       142 G~d~l~~~~~~g~L~~~L~~~~  163 (169)
                      |||++.++.+.|+|.++|+...
T Consensus        77 G~Dd~~~l~e~g~L~~lL~~~~   98 (121)
T 1u6t_A           77 DYDAFFEARENNAVYAFLGLTA   98 (121)
T ss_dssp             EHHHHHHHHHTTCHHHHHTCCC
T ss_pred             chHHHHHhhhhChHHHHHcCCC
Confidence            9999999999999999996543

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.90  E-value=9.8e-24  Score=176.53  Aligned_cols=100  Identities=28%  Similarity=0.466  Sum_probs=90.7

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHH-HHhcCCCCeEEEEc------CCCHHHHHHHHHhcCCCCCcEE
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVR-VLGAYNVPISARNI------LEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~-~L~~~~v~~~~~di------~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      +++.+.|++++++++|+||++     ++||+|.+|++ +|++++|+|+++||      ..+++++++|++++|++|+|||
T Consensus       248 ~~~~~~V~~lI~~~~VvVYsk-----~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TVPqV  322 (362)
T 2jad_A          248 QETIKHVKDLIAENEIFVASK-----TYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTVPNI  322 (362)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEC-----TTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSSCEE
T ss_pred             HHHHHHHHHHhccCCEEEEEc-----CCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCcCEE
Confidence            457889999999999999999     78999999997 89999999877766      3467899999999999999999


Q ss_pred             EeCCeEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          134 FIKGEFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       134 fi~g~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ||||++|||+|++.+|+++|+|+++|+.+++.
T Consensus       323 FI~Gk~IGG~DdL~~L~~~GeL~~lL~~~~~~  354 (362)
T 2jad_A          323 YINGKHIGGNDDLQELRETGELEELLEPILAN  354 (362)
T ss_dssp             EETTEEEESHHHHHHHHHSSHHHHHHHHHC--
T ss_pred             EECCEEEEChHHHHHhhhCChHHHHHHhCchh
Confidence            99999999999999999999999999887763

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.89  E-value=5.6e-23  Score=142.72  Aligned_cols=97  Identities=24%  Similarity=0.476  Sum_probs=90.4

Q ss_pred             HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC---eEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCC
Q 030914           64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILED---PELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~---~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      .+.+++++++++|++|++     ++||+|++++.+|++.+++   |+.+||+.+   ++.++++.+.+|+.++|+||++|
T Consensus         2 ~~~~~~~i~~~~v~~f~~-----~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g   76 (105)
T 1kte_A            2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK   76 (105)
T ss_dssp             HHHHHHHCCTTCEEEEEC-----SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETT
T ss_pred             chHHHhhcccCCEEEEEc-----CCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECC
Confidence            467889999999999998     7999999999999999999   999999987   57888899999999999999999


Q ss_pred             eEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          138 EFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       138 ~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ++|||++++.+++++|+|+++|+.+|+.
T Consensus        77 ~~i~g~~~~~~~~~~g~L~~~l~~~g~~  104 (105)
T 1kte_A           77 ECIGGCTDLESMHKRGELLTRLQQVGAV  104 (105)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHHTCB
T ss_pred             EEEeccHHHHHHHHCCcHHHHHHHcCCC
Confidence            9999999999999999999999988764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.87  E-value=5.5e-22  Score=140.62  Aligned_cols=100  Identities=25%  Similarity=0.371  Sum_probs=93.0

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC---eEEEEcCCCH---HHHHHHHHhcCCCCCcEEE
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP---ISARNILEDP---ELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~---~~~~di~~~~---~~~~~l~~~~g~~t~P~vf  134 (169)
                      ..+++.+++++++++|++|++     ++||+|++++.+|++.+++   |+.+||+.++   +.++++.+.+|+.++|+||
T Consensus         6 ~~~~~~~~~~i~~~~vv~f~~-----~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~   80 (114)
T 2hze_A            6 QMAEEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIF   80 (114)
T ss_dssp             CCHHHHHHTTCCTTCEEEEEC-----TTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEE
T ss_pred             HHHHHHHHHHhccCCEEEEEe-----CCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEE
Confidence            346789999999999999999     7999999999999999999   9999999875   7888999999999999999


Q ss_pred             eCCeEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          135 IKGEFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       135 i~g~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      +||++|||++++..++++|+|.++|+.+++.
T Consensus        81 i~g~~igg~~~~~~~~~~~~L~~~L~~~g~~  111 (114)
T 2hze_A           81 FGKTSIGGYSDLLEIDNMDALGDILSSIGVL  111 (114)
T ss_dssp             ETTEEEESHHHHHHHHHTTCHHHHHHHTTCB
T ss_pred             ECCEEEeCcHHHHHHHHCChHHHHHHHcCCe
Confidence            9999999999999999999999999988764

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=1.1e-21  Score=142.39  Aligned_cols=101  Identities=20%  Similarity=0.378  Sum_probs=93.9

Q ss_pred             CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEe
Q 030914           59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ....+.+.+++++..++|++|++     ++||+|++++.+|++++++|+.+||+.+   ++.+++|.+.+|+.++|+||+
T Consensus        12 ~~~~~~~~~~~~i~~~~vvvf~~-----~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~~vP~l~i   86 (130)
T 2cq9_A           12 LATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV   86 (130)
T ss_dssp             CSCCHHHHHHHHHHHSSEEEEEC-----SSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSCCSSEEEE
T ss_pred             ccHHHHHHHHHHHcCCcEEEEEc-----CCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCCCcCEEEE
Confidence            44678889999999999999998     7999999999999999999999999987   778888999999999999999


Q ss_pred             CCeEeeccHHHHHHHhcccHHHHHhcccc
Q 030914          136 KGEFIGGSDIILNMHQSGELKEKLKGIAS  164 (169)
Q Consensus       136 ~g~~iGG~d~l~~~~~~g~L~~~L~~~~~  164 (169)
                      ||++|||++++..++++|+|.++|+.++.
T Consensus        87 ~G~~igg~~~l~~~~~~~~L~~~L~~~g~  115 (130)
T 2cq9_A           87 NGTFIGGATDTHRLHKEGKLLPLVHQCYL  115 (130)
T ss_dssp             TTEEEEEHHHHHHHHHHTSSHHHHHHHSS
T ss_pred             CCEEEcChHHHHHHHHcCcHHHHHHHcCc
Confidence            99999999999999999999999998765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.86  E-value=9.2e-22  Score=145.96  Aligned_cols=102  Identities=20%  Similarity=0.377  Sum_probs=93.7

Q ss_pred             CcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEe
Q 030914           59 SGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        59 ~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+.++.+.+++++..++|++|++     ++||+|++++.+|++.+++|+.+||+.+   ++.+++|.+.+|+.++|+||+
T Consensus        34 ~~~~~~~~~~~~i~~~~Vvvf~~-----~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g~~tvP~ifi  108 (146)
T 2ht9_A           34 LATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFV  108 (146)
T ss_dssp             CTTCCHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHSCCCSCEEEE
T ss_pred             chhHHHHHHHHHhcCCCEEEEEC-----CCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhCCCCcCeEEE
Confidence            34567889999999999999999     7999999999999999999999999877   778888999999999999999


Q ss_pred             CCeEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          136 KGEFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       136 ~g~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ||++|||++++..++++|+|.++|+.++..
T Consensus       109 ~G~~igG~d~l~~l~~~g~L~~~L~~~g~~  138 (146)
T 2ht9_A          109 NGTFIGGATDTHRLHKEGKLLPLVHQCYLK  138 (146)
T ss_dssp             TTEEEESHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred             CCEEEeCchHHHHHHHcChHHHHHHHcCcc
Confidence            999999999999999999999999987653

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.85  E-value=3.3e-21  Score=130.27  Aligned_cols=75  Identities=27%  Similarity=0.349  Sum_probs=68.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC-----CCHHHHHHHHHhcCCC-----CCcEEEe-CCeEeecc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL-----EDPELKSAVKAFSHWP-----TFPQIFI-KGEFIGGS  143 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~-----~~~~~~~~l~~~~g~~-----t~P~vfi-~g~~iGG~  143 (169)
                      +|+||++. ++.++||+|.+|+++|+++|++|+.+||+     .+++.+++|++.+|++     ++|+||| ||++|||+
T Consensus         1 ~v~iY~~~-~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~   79 (87)
T 1aba_A            1 MFKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             CEEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             CEEEEEeC-CCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCH
Confidence            48899983 34449999999999999999999999999     8899999999999999     9999999 99999999


Q ss_pred             HHHHHHH
Q 030914          144 DIILNMH  150 (169)
Q Consensus       144 d~l~~~~  150 (169)
                      |++.+++
T Consensus        80 d~l~~~~   86 (87)
T 1aba_A           80 DQLREYF   86 (87)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999886

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.84  E-value=2.7e-20  Score=126.27  Aligned_cols=86  Identities=28%  Similarity=0.496  Sum_probs=80.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhc
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQS  152 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~  152 (169)
                      +++|++|++     ++||+|++++.+|++.+++|+.+||+.++..++++.+.+|..++|++|+||++|||++++.++.++
T Consensus         5 m~~v~ly~~-----~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~   79 (92)
T 2khp_A            5 MVDVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDE   79 (92)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEEETTEEEESHHHHHHHHTT
T ss_pred             cccEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEcCHHHHHHHHHc
Confidence            357999998     799999999999999999999999999999999999989999999999999999999999999999


Q ss_pred             ccHHHHHhcccc
Q 030914          153 GELKEKLKGIAS  164 (169)
Q Consensus       153 g~L~~~L~~~~~  164 (169)
                      |+|+++|+ +|+
T Consensus        80 ~~l~~~l~-~g~   90 (92)
T 2khp_A           80 GKLDSLLK-TGK   90 (92)
T ss_dssp             TCHHHHHH-HSS
T ss_pred             CCHHHHHh-ccC
Confidence            99999998 554

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.83  E-value=2.6e-20  Score=123.30  Aligned_cols=81  Identities=28%  Similarity=0.405  Sum_probs=77.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhccc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGE  154 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g~  154 (169)
                      +|++|++     ++||+|++++.+|++.+++|+.+||+.+++.++++.+.+|..++|++|+||+.|||++++.++.++|+
T Consensus         2 ~i~~y~~-----~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~   76 (82)
T 1fov_A            2 NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGG   76 (82)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTC
T ss_pred             cEEEEEC-----CCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHCCC
Confidence            6889998     79999999999999999999999999988888999988999999999999999999999999999999


Q ss_pred             HHHHHh
Q 030914          155 LKEKLK  160 (169)
Q Consensus       155 L~~~L~  160 (169)
                      |+++|+
T Consensus        77 l~~~l~   82 (82)
T 1fov_A           77 LDPLLK   82 (82)
T ss_dssp             SHHHHC
T ss_pred             HHHHhC
Confidence            999884

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.82  E-value=4.6e-20  Score=126.88  Aligned_cols=67  Identities=15%  Similarity=0.247  Sum_probs=61.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEe-CCeEeeccH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFI-KGEFIGGSD  144 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi-~g~~iGG~d  144 (169)
                      ..+|+||++     ++||||.+|+++|++.||+|+++||+.|++.++++.+.+ |.+|+|+||| ||..++|++
T Consensus         3 ta~I~vYs~-----~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~   71 (92)
T 2lqo_A            3 TAALTIYTT-----SWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPS   71 (92)
T ss_dssp             SSCEEEEEC-----TTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCC
T ss_pred             CCcEEEEcC-----CCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCC
Confidence            467999999     799999999999999999999999999999999999886 8999999999 678888864

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.81  E-value=5.4e-20  Score=124.32  Aligned_cols=83  Identities=25%  Similarity=0.475  Sum_probs=77.1

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~~~  151 (169)
                      +++|++|++     ++||+|++++.+|++.+++|+.+||+  ++.++++.+.+ |..++|++|+||++|||++++.++++
T Consensus         5 m~~v~~y~~-----~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~   77 (89)
T 2klx_A            5 MKEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALEN   77 (89)
T ss_dssp             CCCEEEESC-----SCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHHH
T ss_pred             cceEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHHH
Confidence            457999998     79999999999999999999999998  77788888888 99999999999999999999999999


Q ss_pred             cccHHHHHhcc
Q 030914          152 SGELKEKLKGI  162 (169)
Q Consensus       152 ~g~L~~~L~~~  162 (169)
                      +|+|.++|+++
T Consensus        78 ~g~l~~~l~~~   88 (89)
T 2klx_A           78 KGKLDSLLQDV   88 (89)
T ss_dssp             HTTHHHHHHHH
T ss_pred             cCcHHHHHhhc
Confidence            99999999864

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.75  E-value=5.7e-18  Score=113.37  Aligned_cols=74  Identities=23%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH--HHHHHHHhcCC-----CCCcEEEeCCeEeeccHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE--LKSAVKAFSHW-----PTFPQIFIKGEFIGGSDII  146 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~--~~~~l~~~~g~-----~t~P~vfi~g~~iGG~d~l  146 (169)
                      .+|++|++     ++||+|++++.+|+++|++|+.++|+.++.  .++++.+.+|+     .++|+|||||++|||++++
T Consensus         4 m~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~i   78 (89)
T 3msz_A            4 MKVKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTEL   78 (89)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHHH
T ss_pred             eEEEEEEc-----CCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHHH
Confidence            46999999     799999999999999999999998876443  56778888999     9999999999999999999


Q ss_pred             HHHHhc
Q 030914          147 LNMHQS  152 (169)
Q Consensus       147 ~~~~~~  152 (169)
                      .+++++
T Consensus        79 ~~~~~~   84 (89)
T 3msz_A           79 KANADK   84 (89)
T ss_dssp             HHTHHH
T ss_pred             HHHHHH
Confidence            998653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.74  E-value=7.7e-18  Score=148.48  Aligned_cols=95  Identities=22%  Similarity=0.429  Sum_probs=88.9

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---HHHHHHHHHhcCCCCCcEEEeCCe
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---PELKSAVKAFSHWPTFPQIFIKGE  138 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---~~~~~~l~~~~g~~t~P~vfi~g~  138 (169)
                      +.++.+++++++++|+||++     ++||+|.+++++|++++++|+.+||+.+   +++++++++.+|++++|+||+||+
T Consensus         6 ~~~~~v~~~i~~~~v~vy~~-----~~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~   80 (598)
T 2x8g_A            6 GTSQWLRKTVDSAAVILFSK-----TTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGK   80 (598)
T ss_dssp             CHHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTE
T ss_pred             cHHHHHHHHhccCCEEEEEC-----CCChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCE
Confidence            34689999999999999999     6899999999999999999999999865   778999999999999999999999


Q ss_pred             EeeccHHHHHHHhcccHHHHHhc
Q 030914          139 FIGGSDIILNMHQSGELKEKLKG  161 (169)
Q Consensus       139 ~iGG~d~l~~~~~~g~L~~~L~~  161 (169)
                      +|||+|++.++++.|+|++++..
T Consensus        81 ~igG~~~l~~~~~~g~L~~~l~~  103 (598)
T 2x8g_A           81 FIGDSQTVLKYYSNDELAGIVNE  103 (598)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHHC
T ss_pred             EEEeeehhhhhhhcCcchhhccc
Confidence            99999999999999999999964

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.71  E-value=5.8e-17  Score=113.60  Aligned_cols=101  Identities=26%  Similarity=0.436  Sum_probs=87.6

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH---HHHHHHHhcCCCCCcEEEeCCe
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE---LKSAVKAFSHWPTFPQIFIKGE  138 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~---~~~~l~~~~g~~t~P~vfi~g~  138 (169)
                      .+.+.++++++.++|++|+.     +|||+|++++.+|++.+++|..++|+.++.   .+..+.+..|..++|++|++|+
T Consensus         8 ~~~~~~~~~~~~~~vv~f~a-----~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g~   82 (116)
T 2e7p_A            8 AALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGK   82 (116)
T ss_dssp             HHHHHHHHHHTSSSEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETTE
T ss_pred             HHHHHHHHHHcCCCEEEEEC-----CCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECCE
Confidence            45678888898899999988     799999999999999999999999986653   4566777778999999999999


Q ss_pred             EeeccHHHHHHHhcccHHHHHhcccccCC
Q 030914          139 FIGGSDIILNMHQSGELKEKLKGIASNQK  167 (169)
Q Consensus       139 ~iGG~d~l~~~~~~g~L~~~L~~~~~~~~  167 (169)
                      .+||++.+..++..++|.++|+.++...+
T Consensus        83 ~v~~~~~~~~~~~~~~l~~~l~~~g~~~k  111 (116)
T 2e7p_A           83 QIGGCDTVVEKHQRNELLPLLQDAAATAK  111 (116)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHHHTTC---
T ss_pred             EECChHHHHHHHhCChHHHHHHHcccccc
Confidence            99999999999999999999998877543

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.65  E-value=2.8e-16  Score=109.14  Aligned_cols=69  Identities=19%  Similarity=0.250  Sum_probs=60.1

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC-H----HHHHHHHHhcCCCCCcEEEeCC-eEeeccHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED-P----ELKSAVKAFSHWPTFPQIFIKG-EFIGGSDI  145 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~-~----~~~~~l~~~~g~~t~P~vfi~g-~~iGG~d~  145 (169)
                      ++++|+||++     ++||+|++++.+|++++++|+.+||+.+ +    ++.+++++.+|+.++|+|||+| ++|||+++
T Consensus        20 ~~~~v~ly~~-----~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~   94 (103)
T 3nzn_A           20 DRGKVIMYGL-----STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE   94 (103)
T ss_dssp             CCSCEEEEEC-----SSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred             CCCeEEEEcC-----CCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence            4578999999     7999999999999999999999999863 3    3455566778999999999999 99999974

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.64  E-value=9.5e-17  Score=106.59  Aligned_cols=75  Identities=16%  Similarity=0.225  Sum_probs=64.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcC--CCCCcEEEeCCeEeeccHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSH--WPTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g--~~t~P~vfi~g~~iGG~d~l~  147 (169)
                      +|++|++     ++||+|++++.+|++     .+++|..+|++.++..++++.+..|  ..++|+||+||+.|||++++.
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l~   76 (85)
T 1ego_A            2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFA   76 (85)
T ss_dssp             EEEEECC-----TTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHH
T ss_pred             EEEEEeC-----CCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHHH
Confidence            5889988     799999999999998     7899999999765544456777777  799999999999999999999


Q ss_pred             HHHhccc
Q 030914          148 NMHQSGE  154 (169)
Q Consensus       148 ~~~~~g~  154 (169)
                      ++.++|-
T Consensus        77 ~~~~~~~   83 (85)
T 1ego_A           77 AWVKENL   83 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9887653

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.63  E-value=9.2e-16  Score=120.83  Aligned_cols=83  Identities=25%  Similarity=0.409  Sum_probs=71.2

Q ss_pred             cHHHHHHHHh----hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC
Q 030914           62 SLKEVVEQDV----KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        62 ~~~~~i~~~~----~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      ++++.++.+.    .+..|++|++     ++||+|++|+++|+++|++|+++||..++. ++++++.+|++++|+||+||
T Consensus       154 ~~~~il~~l~~~~i~~~~i~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~g~~~vP~~~~~g  227 (241)
T 1nm3_A          154 DADTMLKYLAPQHQVQESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGG  227 (241)
T ss_dssp             SHHHHHHHHCTTSCCCCCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETT
T ss_pred             CHHHHHHHhhhhccccceEEEEEC-----CCChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHhCCCCcCEEEECC
Confidence            4555555443    4678999999     799999999999999999999999998755 47888899999999999999


Q ss_pred             eEeeccHHHHHHH
Q 030914          138 EFIGGSDIILNMH  150 (169)
Q Consensus       138 ~~iGG~d~l~~~~  150 (169)
                      ++|||++++.++.
T Consensus       228 ~~i~g~~~i~~~l  240 (241)
T 1nm3_A          228 KHIGGSDDLEKYF  240 (241)
T ss_dssp             EEEESHHHHHHC-
T ss_pred             EEEECHHHHHHHh
Confidence            9999999998764

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.63  E-value=4.1e-16  Score=105.44  Aligned_cols=67  Identities=15%  Similarity=0.169  Sum_probs=59.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC-----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE-----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~-----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +.+|+||+.     ++||+|++++.+|++++++|+.+||+.     ++++.+++.+.+|..++|+|++||++|||++
T Consensus        11 M~~v~ly~~-----~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~   82 (92)
T 3ic4_A           11 MAEVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN   82 (92)
T ss_dssp             CSSSEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred             CceEEEEEC-----CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence            356999998     799999999999999999999999983     2344578888889999999999999999986

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.58  E-value=4.6e-15  Score=97.71  Aligned_cols=76  Identities=13%  Similarity=0.177  Sum_probs=64.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhccc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGE  154 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g~  154 (169)
                      +|++|+.     ++||+|++++.+|++.+++|..+||+.+++.++.+++ .|..++|++|+||+.+||++.       .+
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~g~~~vP~~~~~g~~~~g~~~-------~~   68 (81)
T 1h75_A            2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRP-------DM   68 (81)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCH-------HH
T ss_pred             EEEEEcC-----CCChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-hCCCccCEEEECCEEEecCCH-------HH
Confidence            5889998     7999999999999999999999999999988887765 588999999999999999862       24


Q ss_pred             HHHHHhccc
Q 030914          155 LKEKLKGIA  163 (169)
Q Consensus       155 L~~~L~~~~  163 (169)
                      |.++|+.+.
T Consensus        69 l~~~l~~~~   77 (81)
T 1h75_A           69 INRLHPAPH   77 (81)
T ss_dssp             HGGGSCCC-
T ss_pred             HHHHHhccc
Confidence            555555443

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.55  E-value=2.5e-14  Score=92.43  Aligned_cols=64  Identities=23%  Similarity=0.344  Sum_probs=58.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +|++|+.     ++||+|++++.+|++.+++|+.+|++.+++.+++++. .|..++|++++||+.+||++
T Consensus         2 ~i~~y~~-----~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~~-~~~~~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A            2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCC
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH-cCCCccCEEEECCeEEcCCC
Confidence            5889988     7999999999999999999999999999888887754 78899999999999999986

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.34  E-value=6.4e-13  Score=87.57  Aligned_cols=71  Identities=11%  Similarity=0.157  Sum_probs=56.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHH----HHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe--EeeccHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVR----VLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE--FIGGSDIIL  147 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~----~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~--~iGG~d~l~  147 (169)
                      .+|++|++     +|||+|++++.    ++++++++|+.++|+.+++..+.. +..|..++|++++||+  ++|+..+..
T Consensus         2 ~~~~~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~gv~~vPt~~i~g~~~~~G~~~~~~   75 (80)
T 2k8s_A            2 ASKAIFYH-----AGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIAEA-EKAGVKSVPALVIDGAAFHINFGAGID   75 (80)
T ss_dssp             CEEEEEEE-----CSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHHHH-HHHTCCEEEEEEETTEEEEEEEEEEHH
T ss_pred             cceEEEeC-----CCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHHHH-HHcCCCcCCEEEECCEEEEeccCcCHH
Confidence            35899998     79999999999    777888999999998653333333 4458899999999999  889876665


Q ss_pred             HHH
Q 030914          148 NMH  150 (169)
Q Consensus       148 ~~~  150 (169)
                      ++.
T Consensus        76 ~l~   78 (80)
T 2k8s_A           76 DLK   78 (80)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            553

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.31  E-value=5.9e-12  Score=85.19  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCC-eEEEEcCCCHHHHHHHHHhcCCCCCcEEE-eCCeEeec
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-ISARNILEDPELKSAVKAFSHWPTFPQIF-IKGEFIGG  142 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~-~~~~di~~~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG  142 (169)
                      +|++|++     +|||+|+.++.+|++.+++ |..+||+.++++.+.+    |.. +|+|+ +||+.++|
T Consensus         2 ~vv~f~a-----~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~~~----g~~-vPtl~~~~G~~v~g   61 (87)
T 1ttz_A            2 ALTLYQR-----DDCHLCDQAVEALAQARAGAFFSVFIDDDAALESAY----GLR-VPVLRDPMGRELDW   61 (87)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHHH----TTT-CSEEECTTCCEEES
T ss_pred             EEEEEEC-----CCCchHHHHHHHHHHHHHhheEEEECCCCHHHHHHh----CCC-cCeEEEECCEEEeC
Confidence            5899999     8999999999999999997 8999999998865543    555 99999 89999965

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.29  E-value=4.5e-12  Score=87.47  Aligned_cols=76  Identities=20%  Similarity=0.295  Sum_probs=59.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh--cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeE--eeccHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG--AYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEF--IGGSDIILN  148 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~--~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~--iGG~d~l~~  148 (169)
                      ...|++|++     +|||+|++++.+|+  ..+++|..+||+. ++. .++.+..| .++|++|+||+.  +||++.   
T Consensus        16 ~~~v~~f~~-----~~C~~C~~~~~~L~~l~~~i~~~~vdi~~-~~~-~el~~~~g-~~vP~l~~~g~~~~~~g~~~---   84 (100)
T 1wjk_A           16 LPVLTLFTK-----APCPLCDEAKEVLQPYKDRFILQEVDITL-PEN-STWYERYK-FDIPVFHLNGQFLMMHRVNT---   84 (100)
T ss_dssp             CCEEEEEEC-----SSCHHHHHHHHHTSTTSSSSEEEEEETTS-STT-HHHHHHSS-SSCSEEEESSSEEEESSCCH---
T ss_pred             CCEEEEEeC-----CCCcchHHHHHHHHHhhhCCeEEEEECCC-cch-HHHHHHHC-CCCCEEEECCEEEEecCCCH---
Confidence            345888988     79999999999999  6679999999982 222 45666678 999999999998  788763   


Q ss_pred             HHhcccHHHHHhccc
Q 030914          149 MHQSGELKEKLKGIA  163 (169)
Q Consensus       149 ~~~~g~L~~~L~~~~  163 (169)
                          .+|.++|+.+.
T Consensus        85 ----~~l~~~l~~~~   95 (100)
T 1wjk_A           85 ----SKLEKQLRKLS   95 (100)
T ss_dssp             ----HHHHHHHHSSS
T ss_pred             ----HHHHHHHHHHH
Confidence                35777776543

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.26  E-value=3.4e-13  Score=96.47  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=50.9

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCC-Cccc-ccCCCccccCCCCCcccccCCc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGM-KYST-DVPNDPDTHEDFRPTSKVDASG   60 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~-~~~s-~vl~d~~~~~~~k~~s~~pt~~   60 (169)
                      |++||||||..|+|+||.++.++|...|+ +|.. |++.|++.++.++.++.|+|.+
T Consensus        22 VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvP   78 (118)
T 2wul_A           22 VVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIP   78 (118)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSC
T ss_pred             EEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCC
Confidence            68999999999999999999999999998 6888 9999999999999999998753

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.20  E-value=2.5e-11  Score=85.25  Aligned_cols=61  Identities=11%  Similarity=0.087  Sum_probs=51.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc----CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe--ecc
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----YNVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI--GGS  143 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i--GG~  143 (169)
                      +..|++|++     +|||+|++++.+|++    ++++|+.+||+.++++.+.    .|.. +|+|  |+||+.+  |++
T Consensus        29 m~~vv~y~~-----~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~~----ygv~-VP~l~~~~dG~~v~~g~~   97 (107)
T 2fgx_A           29 PRKLVVYGR-----EGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTRL----YNDR-VPVLFAVNEDKELCHYFL   97 (107)
T ss_dssp             CCCEEEEEC-----SSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHHH----STTS-CSEEEETTTTEEEECSSC
T ss_pred             ccEEEEEeC-----CCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHH----hCCC-CceEEEEECCEEEEecCC
Confidence            457999999     899999999999998    8999999999999876443    3554 9999  9999988  544

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=99.03  E-value=1.7e-10  Score=93.09  Aligned_cols=67  Identities=19%  Similarity=0.243  Sum_probs=50.1

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC----CC---CeEEEEcC----CCH-------HHHHHHHHhcCCCCC--cEE
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY----NV---PISARNIL----EDP-------ELKSAVKAFSHWPTF--PQI  133 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~v---~~~~~di~----~~~-------~~~~~l~~~~g~~t~--P~v  133 (169)
                      ..|.||++     ++||+|.+|+++|+++    ++   .|+..+++    .|+       ...+++.+..|.+++  |||
T Consensus        44 ~~VelyTs-----~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI  118 (270)
T 2axo_A           44 GVVELFTS-----QGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA  118 (270)
T ss_dssp             CEEEEEEC-----TTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             cEEEEEeC-----CCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEE
Confidence            45889999     7999999999999988    66   45422221    222       223346666788999  999


Q ss_pred             EeCCe-EeeccHH
Q 030914          134 FIKGE-FIGGSDI  145 (169)
Q Consensus       134 fi~g~-~iGG~d~  145 (169)
                      ||||+ ++||+|.
T Consensus       119 ~Ing~~~v~G~d~  131 (270)
T 2axo_A          119 ILNGRDHVKGADV  131 (270)
T ss_dssp             EETTTEEEETTCH
T ss_pred             EECCEEeecCCCH
Confidence            99999 8999984

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.91  E-value=1.1e-09  Score=77.33  Aligned_cols=66  Identities=17%  Similarity=0.029  Sum_probs=51.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH---HHHHHHHHhcC-------------------------
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSH-------------------------  126 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~---~~~~~l~~~~g-------------------------  126 (169)
                      .|+||++     |+||+|++|+++|+++||+|+.+||..++   +...++.+.+|                         
T Consensus         1 ~i~iY~~-----~~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~   75 (114)
T 1rw1_A            1 TYVLYGI-----KACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLDE   75 (114)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCCH
T ss_pred             CEEEEEC-----CCChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCCH
Confidence            3789998     79999999999999999999999998653   33232323334                         


Q ss_pred             ------------CCCCcEEEeCCeEeeccHH
Q 030914          127 ------------WPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus       127 ------------~~t~P~vfi~g~~iGG~d~  145 (169)
                                  .-..|.|..+|+.+-|++.
T Consensus        76 ~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  106 (114)
T 1rw1_A           76 AKAIELMLAQPSMIKRPVLELGGRTLVGFKP  106 (114)
T ss_dssp             HHHHHHHHHCGGGBCSCEEECSSCEEESCCH
T ss_pred             HHHHHHHHhChhheeCcEEEECCEEEEeCCH
Confidence                        2368999999998888863

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.90  E-value=1.8e-09  Score=78.17  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=52.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc---CC------------------------
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS---HW------------------------  127 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~---g~------------------------  127 (169)
                      .|+||++     |+||+|++|+++|++.|++|+.+||..++..+++++++.   |.                        
T Consensus         2 mi~lY~~-----~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~ls   76 (132)
T 1z3e_A            2 MVTLYTS-----PSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESMP   76 (132)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGSB
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCcccccCC
Confidence            4889998     799999999999999999999999998754444444432   21                        


Q ss_pred             --------------CCCcEEEeCCeEeeccHH
Q 030914          128 --------------PTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus       128 --------------~t~P~vfi~g~~iGG~d~  145 (169)
                                    -..|.|.++|+.+-|++.
T Consensus        77 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  108 (132)
T 1z3e_A           77 LQDLYRLINEHPGLLRRPIIIDEKRLQVGYNE  108 (132)
T ss_dssp             HHHHHHHHHHCGGGBCSCEEECSSCEEESCCT
T ss_pred             HHHHHHHHHhCccceeCCEEEECCEEEEcCCH
Confidence                          268999999998888763

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.85  E-value=2.5e-09  Score=76.14  Aligned_cols=66  Identities=14%  Similarity=0.080  Sum_probs=52.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH---HHHHHHHHhcC-------------------------
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSH-------------------------  126 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~---~~~~~l~~~~g-------------------------  126 (169)
                      .|+||++     |+|++|++|+++|+++||+|+.+||..++   +...++.+.+|                         
T Consensus         6 ~i~iY~~-----~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~~   80 (120)
T 2kok_A            6 SVTIYGI-----KNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVDA   80 (120)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCCH
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCCH
Confidence            5899998     79999999999999999999999997544   33333334455                         


Q ss_pred             ------------CCCCcEEEeCCeEeeccHH
Q 030914          127 ------------WPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus       127 ------------~~t~P~vfi~g~~iGG~d~  145 (169)
                                  .-..|.|..+++.+-|++.
T Consensus        81 ~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  111 (120)
T 2kok_A           81 ASARELMLAQPSMVKRPVLERDGKLMVGFKP  111 (120)
T ss_dssp             HHHHHHHHHCGGGBCSSEEEETTEEEECCCH
T ss_pred             HHHHHHHHhCcccEECCEEEECCEEEEeCCH
Confidence                        2368999999999888863

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.70  E-value=1.3e-08  Score=82.94  Aligned_cols=83  Identities=12%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC-H-HHHHHHHHhcCCCCCcEEEeCCeE
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED-P-ELKSAVKAFSHWPTFPQIFIKGEF  139 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~-~-~~~~~l~~~~g~~t~P~vfi~g~~  139 (169)
                      +.+..+.+.+++..++.|..     ||||+|++++.+|++..-++..+|++.+ . +...++.+..|.+++|++|+||+.
T Consensus       187 ~~~~~la~~l~~~~vV~F~A-----~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i~G~~  261 (291)
T 3kp9_A          187 PLAVGLAAHLRQIGGTMYGA-----YWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRT  261 (291)
T ss_dssp             STHHHHHHHHHHTTCEEEEC-----TTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEEEETTEE
T ss_pred             HHHHHHHHHhCCCCEEEEEC-----CCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCcccCeEEECCEE
Confidence            45677788888889999998     8999999999999987655667777632 2 223345566789999999999999


Q ss_pred             eeccHHHHHH
Q 030914          140 IGGSDIILNM  149 (169)
Q Consensus       140 iGG~d~l~~~  149 (169)
                      +.|..+..++
T Consensus       262 ~~G~~~~~~L  271 (291)
T 3kp9_A          262 YTGVRSLEAL  271 (291)
T ss_dssp             EESCCCHHHH
T ss_pred             ecCCCCHHHH
Confidence            9887654443

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=98.60  E-value=2.9e-09  Score=74.82  Aligned_cols=77  Identities=19%  Similarity=0.308  Sum_probs=54.3

Q ss_pred             hhhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecC
Q 030914            5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGV   83 (169)
Q Consensus         5 ~~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~   83 (169)
                      -+++|+||||+.|.|+|+.++.++|.++|++|.. ||..|++.++.++..+.|++.               | .||..| 
T Consensus        17 ~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tv---------------P-~ifi~g-   79 (111)
T 3zyw_A           17 PCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTY---------------P-QLYVSG-   79 (111)
T ss_dssp             SEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSS---------------C-EEEETT-
T ss_pred             CEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCC---------------C-EEEECC-
Confidence            3689999999999999999999999999999988 888776554433333333221               2 345554 


Q ss_pred             CCCCCCccHHHHHHHHhc
Q 030914           84 PEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        84 ~~~~~C~~c~~a~~~L~~  101 (169)
                         ..-+-|..+.++.++
T Consensus        80 ---~~iGG~d~l~~l~~~   94 (111)
T 3zyw_A           80 ---ELIGGLDIIKELEAS   94 (111)
T ss_dssp             ---EEEECHHHHHHHHHT
T ss_pred             ---EEEecHHHHHHHHHC
Confidence               234556776666544

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.53  E-value=2.6e-08  Score=72.95  Aligned_cols=47  Identities=15%  Similarity=0.266  Sum_probs=39.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS  125 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~  125 (169)
                      ..|+||+.     |+|++|++|+++|+++|++|+.+||..++..+++|.++.
T Consensus         2 ~~itiY~~-----p~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~   48 (141)
T 1s3c_A            2 SNITIYHN-----PASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLI   48 (141)
T ss_dssp             -CCEEECC-----TTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHH
T ss_pred             CcEEEEEC-----CCChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHh
Confidence            36889998     899999999999999999999999998766666665544

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.52  E-value=1.2e-07  Score=65.70  Aligned_cols=73  Identities=11%  Similarity=0.091  Sum_probs=53.3

Q ss_pred             HHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH--HHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           68 EQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE--LKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        68 ~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~--~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      .+......|+.|..     +|||+|++....|++..-.|..+|++.+..  ....+.+..|...+|.++++|+.+.|...
T Consensus         8 a~~~~k~~vV~F~A-----~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i~G~~~~G~~~   82 (106)
T 3kp8_A            8 AAHLRQIGGTMYGA-----YWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTYTGVRS   82 (106)
T ss_dssp             HHHHHHHTCEEEEC-----TTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEETTEEEESCCC
T ss_pred             HHhcCCCEEEEEEC-----CCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcCCeEeCEEEECCEEecCCCC
Confidence            33444456888887     799999999999998876677888873321  12235555688999999999998777543

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.51  E-value=6.3e-08  Score=68.89  Aligned_cols=46  Identities=22%  Similarity=0.344  Sum_probs=39.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH  126 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g  126 (169)
                      |+||++     |+|++|++|+++|++.|++|+.+||..++.-+++|.++.+
T Consensus         2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~   47 (120)
T 3l78_A            2 VTLFLS-----PSCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILS   47 (120)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHh
Confidence            679998     7999999999999999999999999987766666665543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.47  E-value=1.7e-07  Score=60.77  Aligned_cols=60  Identities=22%  Similarity=0.448  Sum_probs=47.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe--Eeec
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE--FIGG  142 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~--~iGG  142 (169)
                      ..|++|..     +|||+|+++...|++.      ++.+..+|++.++++    .+..|..++|.+++||+  ++|.
T Consensus         3 ~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            3 VNIEVFTS-----PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK----AIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCEEEESC-----SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG----GGGTCSSCSSEEEETTTEEEECS
T ss_pred             EEEEEEEC-----CCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH----HHhCCceeeCEEEECCEEEEccC
Confidence            35788887     7999999999888652      688999999888753    34457889999999998  5665

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.47  E-value=6.5e-08  Score=69.02  Aligned_cols=47  Identities=19%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF  124 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~  124 (169)
                      +..|+||+.     |+|++|++|+++|+++|++|+.+||..++.-+++|..+
T Consensus         4 M~~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~   50 (121)
T 3rdw_A            4 MKDVTIYHN-----PRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKEL   50 (121)
T ss_dssp             --CCEEECC-----TTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHH
T ss_pred             CCcEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHH
Confidence            346999998     89999999999999999999999999877666666554

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.3e-08  Score=72.63  Aligned_cols=52  Identities=27%  Similarity=0.463  Sum_probs=41.5

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCC---ccc-ccCCCccccCCCCCccccc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMK---YST-DVPNDPDTHEDFRPTSKVD   57 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~---~~s-~vl~d~~~~~~~k~~s~~p   57 (169)
                      +++|+||||.+|.|+|+.++.++|..+|++   |.. |+..|++.++.++..+.|+
T Consensus        18 Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~   73 (121)
T 3gx8_A           18 VVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWP   73 (121)
T ss_dssp             EEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCC
T ss_pred             EEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCC
Confidence            789999999999999999999999999998   666 8877765554444444333

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.43  E-value=1e-07  Score=67.91  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=39.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF  124 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~  124 (169)
                      .|+||+.     |+|++|++|+++|+++|++|+.+||..++.-+++|.++
T Consensus         5 ~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~   49 (120)
T 3gkx_A            5 KTLFLQY-----PACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAW   49 (120)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHH
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHH
Confidence            5889998     89999999999999999999999999877666666554

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=98.40  E-value=1.9e-08  Score=70.20  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCcccc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTH   47 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~   47 (169)
                      +++|+||||..|.|+|+.++.++|.++|++|.. ||..|++.+
T Consensus        20 Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~   62 (109)
T 3ipz_A           20 VVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLR   62 (109)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHH
T ss_pred             EEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHH
Confidence            689999999999999999999999999999988 888765543

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.39  E-value=1.3e-07  Score=67.33  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS  125 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~  125 (169)
                      -|+||+.     |+|+.|++|+++|+++|++|+.+||..++.-+++|.++.
T Consensus         4 Mi~iY~~-----~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l   49 (120)
T 3fz4_A            4 MLTFYEY-----PKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWL   49 (120)
T ss_dssp             SEEEEEC-----SSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHH
Confidence            3789998     899999999999999999999999998876666665553

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.39  E-value=1.1e-06  Score=69.12  Aligned_cols=56  Identities=20%  Similarity=0.322  Sum_probs=44.9

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhc----------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGA----------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~----------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      |++|+.     ||||+|+++...|++          .+|.+..+|++.++++.+    ..|..++|++++||+.+
T Consensus       142 vv~F~a-----~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~----~~~V~~vPt~~i~G~~~  207 (243)
T 2hls_A          142 IETIIT-----PSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDIAD----KYGVMSVPSIAINGYLV  207 (243)
T ss_dssp             EEEEEC-----SSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHH----HTTCCSSSEEEETTEEE
T ss_pred             EEEEEC-----CCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHHHH----HcCCeeeCeEEECCEEE
Confidence            566887     899999999998865          468889999998876433    34778999999999843

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.39  E-value=7.5e-07  Score=77.33  Aligned_cols=85  Identities=16%  Similarity=0.129  Sum_probs=61.2

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIK  136 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~  136 (169)
                      +..+.++++.....|++|+.     +|||+|+.+..+|++.     +|.+..+|++..++    +.+..|..++|++++|
T Consensus       107 ~~~~~i~~~~~~~~i~~f~a-----~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~----~~~~~~i~svPt~~i~  177 (521)
T 1hyu_A          107 SLLEQIRDIDGDFEFETYYS-----LSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERNVMGVPAVFVN  177 (521)
T ss_dssp             HHHHHHHHCCSCEEEEEEEC-----TTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCSSSEEEET
T ss_pred             HHHHHHHhcCCCcceEEEEC-----CCCcCcHHHHHHHHHHHhHcCceEEEEEechhhHH----HHHHhCCCccCEEEEC
Confidence            34455554445556889988     7999999998877543     46778889887766    4445588999999999


Q ss_pred             CeEeec-c---HHHHHHHhcccH
Q 030914          137 GEFIGG-S---DIILNMHQSGEL  155 (169)
Q Consensus       137 g~~iGG-~---d~l~~~~~~g~L  155 (169)
                      |+.++. .   +++.++.+.+.+
T Consensus       178 g~~~~~G~~~~~~l~~~l~~~~~  200 (521)
T 1hyu_A          178 GKEFGQGRMTLTEIVAKVDTGAE  200 (521)
T ss_dssp             TEEEEESCCCHHHHHHHHCCSSC
T ss_pred             CEEEecCCCCHHHHHHHHhhccc
Confidence            998864 2   556666655543

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.27  E-value=3e-07  Score=59.56  Aligned_cols=59  Identities=29%  Similarity=0.512  Sum_probs=44.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe--Eeec
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE--FIGG  142 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~--~iGG  142 (169)
                      .|++|..     +|||+|+++...|++    +  ++.+..+|++.++++    .+..|...+|.+++||+  +.|.
T Consensus         5 ~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~G~~~~~G~   71 (85)
T 1fo5_A            5 KIELFTS-----PMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEYGIMAVPTIVINGDVEFIGA   71 (85)
T ss_dssp             EEEEEEC-----CCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTSTTTCCSSEEEETTEEECCSS
T ss_pred             EEEEEeC-----CCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHH----HHHCCCcccCEEEECCEEeeecC
Confidence            4677777     799999999887765    2  577888999877653    33457789999999998  4554

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=98.20  E-value=3.5e-07  Score=65.00  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=39.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH---hcCCC
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA---FSHWP  128 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~---~~g~~  128 (169)
                      .|.||+.     |+|+.|++|+++|+++|++|+.+||..++.-+++|..   .+|++
T Consensus         5 ~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~~~g~~   56 (119)
T 3f0i_A            5 SVVIYHN-----PKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQQLGLN   56 (119)
T ss_dssp             CCEEECC-----TTCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHHHHTCS
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHHHcCCc
Confidence            5889998     8999999999999999999999999875544444443   34554

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=98.15  E-value=7.1e-06  Score=56.70  Aligned_cols=70  Identities=17%  Similarity=0.331  Sum_probs=47.9

Q ss_pred             HHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--
Q 030914           64 KEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        64 ~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      .+.++++++.++ ++|+..+    +||++|+++...|++.     ++.+..+|++.++++.+    ..+...+|.+++  
T Consensus        20 ~~~~~~~~~~~k~vvv~F~a----~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~~----~~~v~~~Pt~~~~~   91 (114)
T 2oe3_A           20 LTEFRNLIKQNDKLVIDFYA----TWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIAK----ECEVTAMPTFVLGK   91 (114)
T ss_dssp             HHHHHHHHHHCSEEEEEEEC----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSBSEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH----HCCCCcccEEEEEe
Confidence            344555555544 4444333    7999999988877654     58888999988876543    346778898877  


Q ss_pred             CCeEee
Q 030914          136 KGEFIG  141 (169)
Q Consensus       136 ~g~~iG  141 (169)
                      +|+.++
T Consensus        92 ~G~~~~   97 (114)
T 2oe3_A           92 DGQLIG   97 (114)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            888653

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=98.14  E-value=5.4e-06  Score=63.13  Aligned_cols=70  Identities=20%  Similarity=0.302  Sum_probs=56.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNMH  150 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~~  150 (169)
                      +.+.||..     +.||+|.+++-+|...|++|+.++|+.....  ...+.++..++|.+. .||..+.+...+....
T Consensus         2 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL   72 (218)
T 3ir4_A            2 NAMKLYIY-----DHCPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMIGQKMVPILQKDDSRYLPESMDIVHYV   72 (218)
T ss_dssp             CCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHHSSSCSCEEECTTSCEEECHHHHHHHH
T ss_pred             CeEEEEcC-----CCCchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcCCCceeeeEEEeCCeEeeCHHHHHHHH
Confidence            56889988     7899999999999999999999988754322  135678899999999 8899888876666543

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.07  E-value=1.5e-05  Score=54.44  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=44.8

Q ss_pred             hhcCCeE-EEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           71 VKENPVM-LYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        71 ~~~~~Vv-ly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .+..+++ .|..     +|||+|+++...|++.     ++.+..+|++.++++    .+..|...+|.+++  +|+.++
T Consensus        17 ~~~~~~vv~f~a-----~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~G~~v~   86 (110)
T 2l6c_A           17 EGLSDAIVFFHK-----NLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPEL----MKELGFERVPTLVFIRDGKVAK   86 (110)
T ss_dssp             TTCSEEEEEEEC-----SSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHHH----HHHTTCCSSCEEEEEESSSEEE
T ss_pred             HcCCCEEEEEEC-----CCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHHH----HHHcCCcccCEEEEEECCEEEE
Confidence            3334444 4555     7999999999888654     467788888776654    34457789999988  998876

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=98.07  E-value=2.7e-07  Score=67.05  Aligned_cols=43  Identities=26%  Similarity=0.353  Sum_probs=38.0

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHE   48 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~   48 (169)
                      +++|+||||..|.|+|+.++.++|.++|++|.. ||..|++.++
T Consensus        37 Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~   80 (135)
T 2wci_A           37 ILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRA   80 (135)
T ss_dssp             EEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHH
T ss_pred             EEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHH
Confidence            678999999999999999999999999999988 8887755443

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.07  E-value=1e-05  Score=55.14  Aligned_cols=73  Identities=12%  Similarity=0.223  Sum_probs=48.9

Q ss_pred             ccHHHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           61 LSLKEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        61 ~~~~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      ++.++.+.... ...+++|+..+    +|||+|++....|++.     ++.+..+|++.++++.    +..+...+|.++
T Consensus        15 ~~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~   86 (118)
T 2vm1_A           15 QEFDTHMANGKDTGKLVIIDFTA----SWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDVA----EAYNVEAMPTFL   86 (118)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCSBSEEE
T ss_pred             HHHHHHHHhcccCCCEEEEEEEC----CCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHHH----HHcCCCcCcEEE
Confidence            34555565544 23455554443    7999999988877543     5778888988776543    344678899987


Q ss_pred             e--CCeEee
Q 030914          135 I--KGEFIG  141 (169)
Q Consensus       135 i--~g~~iG  141 (169)
                      +  +|+.++
T Consensus        87 ~~~~g~~~~   95 (118)
T 2vm1_A           87 FIKDGEKVD   95 (118)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCeEEE
Confidence            7  887653

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=98.05  E-value=1.3e-05  Score=55.42  Aligned_cols=72  Identities=15%  Similarity=0.285  Sum_probs=47.7

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ++.++.+.+. +...++|+...    +||++|++....|++.     ++.+..+|++.++++.    +..+...+|.+++
T Consensus        20 ~~f~~~l~~~-~~k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~   90 (116)
T 3qfa_C           20 TAFQEALDAA-GDKLVVVDFSA----TWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVA----SECEVKSMPTFQF   90 (116)
T ss_dssp             HHHHHHHHHH-TTSCEEEEEEC----TTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHHHhc-CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHcCCccccEEEE
Confidence            3444444433 34445554433    7999999998877653     4677888998877654    3447788999877


Q ss_pred             --CCeEee
Q 030914          136 --KGEFIG  141 (169)
Q Consensus       136 --~g~~iG  141 (169)
                        +|+.+.
T Consensus        91 ~~~G~~~~   98 (116)
T 3qfa_C           91 FKKGQKVG   98 (116)
T ss_dssp             ESSSSEEE
T ss_pred             EeCCeEEE
Confidence              787654

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=98.03  E-value=2.9e-05  Score=51.76  Aligned_cols=62  Identities=16%  Similarity=0.273  Sum_probs=44.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeec
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGG  142 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG  142 (169)
                      ...++|+..+    +|||+|++....|++.     ++.+..+|++.++++.    +..+...+|.+++  +|+.++.
T Consensus        20 ~~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~~   88 (105)
T 3m9j_A           20 DKLVVVDFSA----TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVA----SESEVKSMPTFQFFKKGQKVGE   88 (105)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHH----HHTTCCBSSEEEEEETTEEEEE
T ss_pred             CCeEEEEEEC----CCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHH----HHcCCCcCcEEEEEECCeEEEE
Confidence            3445544433    7999999998888652     5778889998887654    3446788999877  8887653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.03  E-value=2.4e-05  Score=55.02  Aligned_cols=72  Identities=17%  Similarity=0.248  Sum_probs=56.5

Q ss_pred             HHHHhh-cCCeEEEeecCCCCCCCccHHHHHHHHhcC----CCCeEEEEcCCCHHHHHHHHHhcCCC-CCcEEEe--CCe
Q 030914           67 VEQDVK-ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----NVPISARNILEDPELKSAVKAFSHWP-TFPQIFI--KGE  138 (169)
Q Consensus        67 i~~~~~-~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~v~~~~~di~~~~~~~~~l~~~~g~~-t~P~vfi--~g~  138 (169)
                      ++++++ ..+|+||--+    .|||-|+.+...|++.    ++++-.+||+++.++-.++.+..|-. ..||+++  ||+
T Consensus        17 f~~ii~~~~~vvi~kha----twCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~   92 (112)
T 3iv4_A           17 FEQVIEENKYVFVLKHS----ETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGE   92 (112)
T ss_dssp             HHHHHHHCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTE
T ss_pred             HHHHHhcCCCEEEEEEC----CcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCE
Confidence            455554 4567777665    4999999998877654    69999999998888888888888888 5999854  998


Q ss_pred             Eeec
Q 030914          139 FIGG  142 (169)
Q Consensus       139 ~iGG  142 (169)
                      .|.-
T Consensus        93 ~v~~   96 (112)
T 3iv4_A           93 MVWN   96 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=98.02  E-value=1.4e-05  Score=58.02  Aligned_cols=61  Identities=11%  Similarity=0.143  Sum_probs=44.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ...++|+...    +||++|++....|++.     ++.+..+|++.++++.    +..+...+|.+++  +|+.++
T Consensus        32 ~~~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~~   99 (153)
T 2wz9_A           32 KSLLVVHFWA----PWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVS----EKYEISSVPTFLFFKNSQKID   99 (153)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHHH----HHcCCCCCCEEEEEECCEEEE
Confidence            3445544443    7999999988877654     6888999998877643    3446788999977  998653

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=98.00  E-value=3.4e-05  Score=52.12  Aligned_cols=72  Identities=10%  Similarity=0.222  Sum_probs=46.9

Q ss_pred             cHHHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           62 SLKEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        62 ~~~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      +.++.+.+.- ....++|+..+    +|||+|+.....|++.      ++.+..+|++.++++.+.    .+...+|.++
T Consensus        12 ~~~~~l~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~----~~v~~~Pt~~   83 (112)
T 1ep7_A           12 AWDAQLAKGKEEHKPIVVDFTA----TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEA----AGITAMPTFH   83 (112)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHH----HTCCBSSEEE
T ss_pred             HHHHHHHhhcccCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHHH----cCCCcccEEE
Confidence            3445554432 13445544433    7999999988777543      477888898877665443    3677899987


Q ss_pred             e--CCeEee
Q 030914          135 I--KGEFIG  141 (169)
Q Consensus       135 i--~g~~iG  141 (169)
                      +  +|+.+.
T Consensus        84 ~~~~G~~~~   92 (112)
T 1ep7_A           84 VYKDGVKAD   92 (112)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCeEEE
Confidence            7  887654

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.00  E-value=9.1e-07  Score=61.29  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=36.9

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      +++|+||+|..|.|+++.++.++|..+|++|.. ||..|++.
T Consensus        17 vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~   58 (109)
T 1wik_A           17 VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEV   58 (109)
T ss_dssp             EEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHH
T ss_pred             EEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHH
Confidence            578999999999999999999999999999988 88876543

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.96  E-value=2.4e-05  Score=53.89  Aligned_cols=72  Identities=13%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             cHHHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           62 SLKEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        62 ~~~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +..+.+.+.. ...+++|+..+    +|||+|++....|++.     ++.+..+|++.++++.    +..|...+|.+++
T Consensus        22 ~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~   93 (122)
T 2vlu_A           22 QWTMQIEEANTAKKLVVIDFTA----SWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPIA----EQFSVEAMPTFLF   93 (122)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHHHhhccCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHHH----HHcCCCcccEEEE
Confidence            4455555432 23445544443    7999999988877542     4778888998877643    3446788998877


Q ss_pred             --CCeEee
Q 030914          136 --KGEFIG  141 (169)
Q Consensus       136 --~g~~iG  141 (169)
                        +|+.++
T Consensus        94 ~~~G~~~~  101 (122)
T 2vlu_A           94 MKEGDVKD  101 (122)
T ss_dssp             EETTEEEE
T ss_pred             EeCCEEEE
Confidence              887654

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=97.95  E-value=4.9e-05  Score=52.06  Aligned_cols=71  Identities=17%  Similarity=0.278  Sum_probs=47.8

Q ss_pred             ccHHHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcC----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           61 LSLKEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAY----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ++..+.+.+. +...++| |..     +||++|++....|++.    ++.+..+|++.++++    .+..|...+|.+++
T Consensus        22 ~~~~~~l~~~-~~~~~vv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~   91 (117)
T 2xc2_A           22 GDLESLLEQH-KNKLVVVDFFA-----TWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEET----ARKYNISAMPTFIA   91 (117)
T ss_dssp             THHHHHHHHT-TTSCEEEEEEC-----TTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHHH----HHHTTCCSSSEEEE
T ss_pred             HHHHHHHHhC-CCCEEEEEEEC-----CCCHhHHHHhHHHHHHHHHcCcEEEEEECCccHHH----HHHcCCCccceEEE
Confidence            3445555542 3344444 454     7999999988877543    677888888877654    33446788999877


Q ss_pred             --CCeEee
Q 030914          136 --KGEFIG  141 (169)
Q Consensus       136 --~g~~iG  141 (169)
                        +|+.++
T Consensus        92 ~~~G~~~~   99 (117)
T 2xc2_A           92 IKNGEKVG   99 (117)
T ss_dssp             EETTEEEE
T ss_pred             EeCCcEEE
Confidence              888654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.94  E-value=0.00012  Score=49.51  Aligned_cols=61  Identities=18%  Similarity=0.280  Sum_probs=41.4

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ...++|+..+    +||++|++....|+       ..++.+..+|++.++++    .+..|...+|.+++  +|+.++
T Consensus        21 ~~~~~v~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~   90 (112)
T 3d6i_A           21 DKLIVLYFHT----SWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEI----SELFEISAVPYFIIIHKGTILK   90 (112)
T ss_dssp             TCCEEEEEEC----CC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHH----HHHcCCCcccEEEEEECCEEEE
Confidence            3455554443    79999999888775       23578888999887764    33456788999866  898765

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=97.93  E-value=3.5e-05  Score=51.20  Aligned_cols=61  Identities=13%  Similarity=0.178  Sum_probs=43.4

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ..+++|+..+    +|||+|+.....|++.     ++.+..+|++.++++.    +..+-..+|.+++  +|+.+.
T Consensus        19 ~~~~~v~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~   86 (104)
T 2vim_A           19 GRLIVVDFFA----QWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEAA----AKYSVTAMPTFVFIKDGKEVD   86 (104)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC----CCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHHH----HHcCCccccEEEEEeCCcEEE
Confidence            3455554333    7999999998877543     6888889998877643    3346778998877  887654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.92  E-value=7.5e-05  Score=51.26  Aligned_cols=64  Identities=16%  Similarity=0.167  Sum_probs=42.9

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEcCCCH--HHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNILEDP--ELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di~~~~--~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .+++|+...    +|||+|++....|.    +++.++..+|++...  +....+.+..|-..+|.+++  +|+.+.
T Consensus        30 ~~~~v~f~a----~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G~~~~  101 (118)
T 1zma_A           30 ETATFFIGR----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQINV  101 (118)
T ss_dssp             CCEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEEE
T ss_pred             CeEEEEEEC----CCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECCEEEE
Confidence            455554443    79999999866554    446778888887643  33345656668889999854  787553

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=97.92  E-value=7e-05  Score=50.36  Aligned_cols=72  Identities=7%  Similarity=0.036  Sum_probs=47.3

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ++..+.+.+ -....++++..+    +||++|++....|++.     ++.+..+|++.++++.    +..+-..+|.+++
T Consensus        10 ~~~~~~~~~-~~~~~v~v~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~   80 (107)
T 1gh2_A           10 PDFQPELSG-AGSRLAVVKFTM----RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTA----ATNNISATPTFQF   80 (107)
T ss_dssp             GGHHHHHHH-TTTSCEEEEEEC----SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHHHh-CCCCEEEEEEEC----CCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHHHH----HhcCCCcccEEEE
Confidence            344555443 123445444333    7999999998877653     5788899998876643    3456788998754


Q ss_pred             --CCeEee
Q 030914          136 --KGEFIG  141 (169)
Q Consensus       136 --~g~~iG  141 (169)
                        +|+.++
T Consensus        81 ~~~G~~~~   88 (107)
T 1gh2_A           81 FRNKVRID   88 (107)
T ss_dssp             EETTEEEE
T ss_pred             EECCeEEE
Confidence              887654

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.92  E-value=3.6e-05  Score=51.80  Aligned_cols=61  Identities=18%  Similarity=0.275  Sum_probs=42.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ...++|+..+    +||++|++....|++.      ++.+..+|++.++++.    +..+...+|.+++  +|+.++
T Consensus        22 ~~~vlv~f~a----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~g~~~~   90 (111)
T 3gnj_A           22 GKACLVMFSR----KNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTLF----QRFSLKGVPQILYFKDGEYKG   90 (111)
T ss_dssp             CCCEEEEEEC----SSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHH----HHTTCCSSCEEEEEETTEEEE
T ss_pred             CCEEEEEEeC----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhHH----HhcCCCcCCEEEEEECCEEEE
Confidence            3445444433    7999999988877543      3778889998887643    3446788998866  887654

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=97.91  E-value=2.7e-05  Score=60.76  Aligned_cols=76  Identities=13%  Similarity=0.136  Sum_probs=51.7

Q ss_pred             cCCeEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +..+.||.+...   ..+.||+|.+++-+|...||+|+.+.|+.. ....++.+.+...++|.+..||..|.....+...
T Consensus        11 ~~~i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   89 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLAPGTNPPFLVYNKELKTDFIKIEEF   89 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC-----------CCSSSCEEEETTEEECCHHHHHHH
T ss_pred             CCCEEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhCCCCCCCEEEECCEeccCHHHHHHH
Confidence            346899933111   126899999999999999999999888654 2234566777788999999999988877666554

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.88  E-value=0.00011  Score=49.89  Aligned_cols=67  Identities=12%  Similarity=0.178  Sum_probs=45.6

Q ss_pred             HHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           67 VEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        67 i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      ++++++.+ .++|+..+    +||++|++....|++     .++.+..+|++.++++    .+..+...+|.+++  +|+
T Consensus        19 f~~~~~~~k~vlv~f~a----~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~   90 (112)
T 1syr_A           19 FDSIISQNELVIVDFFA----EWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEV----TEKENITSMPTFKVYKNGS   90 (112)
T ss_dssp             HHHHHHHCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHH----HHHTTCCSSSEEEEEETTE
T ss_pred             HHHHHccCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHHH----HHHcCCCcccEEEEEECCc
Confidence            33444444 44444333    799999999987765     2588888999877654    33446788998877  887


Q ss_pred             Eee
Q 030914          139 FIG  141 (169)
Q Consensus       139 ~iG  141 (169)
                      .+.
T Consensus        91 ~~~   93 (112)
T 1syr_A           91 SVD   93 (112)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.87  E-value=6.1e-05  Score=52.63  Aligned_cols=73  Identities=12%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             ccHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           61 LSLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        61 ~~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      ++.++.+......+ .++|+..+    +||++|++....|++.     ++.+..+|++.++++.    +..+...+|.++
T Consensus        25 ~~~~~~l~~~~~~~k~vvv~f~a----~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~   96 (124)
T 1xfl_A           25 ETWNEQLQKANESKTLVVVDFTA----SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVA----SDWAIQAMPTFM   96 (124)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHH----HHTTCCSSSEEE
T ss_pred             HHHHHHHHHhhhcCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHHH----HHcCCCccCEEE
Confidence            34555565544333 44444443    7999999988877543     5777788888776543    344678899987


Q ss_pred             e--CCeEee
Q 030914          135 I--KGEFIG  141 (169)
Q Consensus       135 i--~g~~iG  141 (169)
                      +  +|+.++
T Consensus        97 ~~~~G~~~~  105 (124)
T 1xfl_A           97 FLKEGKILD  105 (124)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCEEEE
Confidence            7  888654

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=97.87  E-value=6.2e-05  Score=52.87  Aligned_cols=60  Identities=17%  Similarity=0.275  Sum_probs=43.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ..++|+..+    +||++|++....|++.     ++.+..+|++.++++.+    ..+...+|.+++  +|+.++
T Consensus        38 k~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~v~~~Pt~~i~~~G~~~~  104 (125)
T 1r26_A           38 ILTVAWFTA----VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVS----KCRVLQLPTFIIARSGKMLG  104 (125)
T ss_dssp             SCEEEEEEC----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEC----CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHH----HcCCCcccEEEEEeCCeEEE
Confidence            345544443    7999999988877552     58888999988876433    346788999877  898654

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=97.86  E-value=3.5e-05  Score=60.30  Aligned_cols=76  Identities=16%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             cCCeEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ...|.||.|...   +.+.||||.++.-+|...||+|+.+.|+.. ....++.+.+...++|.+..||..+.....+...
T Consensus        23 ~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~dg~~l~ES~aI~~Y  101 (250)
T 3fy7_A           23 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDF  101 (250)
T ss_dssp             --CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC---------------CCSCEEEETTEEECCHHHHHHH
T ss_pred             CCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            347999987543   347899999999999999999998888644 2334666777788999999999988876655554

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.86  E-value=3.3e-05  Score=52.69  Aligned_cols=62  Identities=23%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhc------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGA------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ....++|+..+    +||++|++....|++      .++.+..+|++.++++.    +..|...+|.+++  +|+.++
T Consensus        16 ~~~~~lv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~~   85 (112)
T 2voc_A           16 SEGVVLADFWA----PWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQETA----GKYGVMSIPTLLVLKDGEVVE   85 (112)
T ss_dssp             SSSEEEEEEEC----TTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSHH----HHTTCCSBSEEEEEETTEEEE
T ss_pred             CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHH----HHcCCCcccEEEEEeCCEEEE
Confidence            44455554443    799999988877654      25788889998877643    3346788999988  998654

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=97.86  E-value=3.8e-05  Score=58.09  Aligned_cols=68  Identities=18%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||+.     +.||||++++-+|.+.||+|+.+.|+-.. -.+++.+.+...++|.+..||..|.....+.+.
T Consensus         4 m~LY~~-----~~sP~~~rvr~~L~e~gi~~e~~~v~~~~-~~~~~~~~nP~g~vPvL~~~~~~l~ES~aI~~y   71 (210)
T 4hoj_A            4 MTLYSG-----ITCPFSHRCRFVLYEKGMDFEIKDIDIYN-KPEDLAVMNPYNQVPVLVERDLVLHESNIINEY   71 (210)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEecC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCC-CCHHHHHHCCCCCCcEEEECCEEEeccHHHHHH
Confidence            568987     78999999999999999999998886421 123577788888999999999988776555544

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.85  E-value=8.1e-05  Score=49.53  Aligned_cols=51  Identities=16%  Similarity=0.244  Sum_probs=37.6

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +|||+|++....|++    +  ++.+..+|++.++++.    +..+...+|.+++  +|+.+.
T Consensus        30 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   88 (106)
T 1xwb_A           30 TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIA----MEYNISSMPTFVFLKNGVKVE   88 (106)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHHH----HHcCCCcccEEEEEcCCcEEE
Confidence            799999988877654    2  5677788888776543    3446778999877  887654

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.84  E-value=0.00015  Score=50.05  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=46.0

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEEe
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNIL-EDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +..+.+.+. +..+++|+..+    +|||+|++....|++.     ++.+..+|++ .++++    .+..|...+|.+++
T Consensus        27 ~~~~~~~~~-~~~~~vv~f~a----~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~~----~~~~~v~~~Pt~~~   97 (124)
T 1faa_A           27 TFWPIVKAA-GDKPVVLDMFT----QWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTL----AKELGIRVVPTFKI   97 (124)
T ss_dssp             THHHHHHHT-TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHH----HHHHCCSSSSEEEE
T ss_pred             hHHHHHHhc-CCCEEEEEEEC----CcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHHH----HHHcCCCeeeEEEE
Confidence            445555432 23445444333    7999999988877542     5778888887 45544    33446788999877


Q ss_pred             --CCeEee
Q 030914          136 --KGEFIG  141 (169)
Q Consensus       136 --~g~~iG  141 (169)
                        +|+.++
T Consensus        98 ~~~G~~~~  105 (124)
T 1faa_A           98 LKENSVVG  105 (124)
T ss_dssp             EETTEEEE
T ss_pred             EeCCcEEE
Confidence              888764

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.84  E-value=3.6e-05  Score=51.28  Aligned_cols=62  Identities=16%  Similarity=0.279  Sum_probs=43.6

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +..+++|+..+    +|||+|+.....|++.      .+.+..+|++.++++.    +..+...+|.+++  +|+.++
T Consensus        18 ~~~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   87 (106)
T 3die_A           18 ESGVQLVDFWA----TACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTA----AKYEVMSIPTLIVFKDGQPVD   87 (106)
T ss_dssp             CSSEEEEEEEC----SBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSBSEEEEEETTEEEE
T ss_pred             cCCcEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHH----HhCCCcccCEEEEEeCCeEEE
Confidence            45555555443    7999999988777543      2778888998887654    3446788999866  887654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.83  E-value=3.2e-05  Score=51.95  Aligned_cols=68  Identities=12%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCC
Q 030914           61 LSLKEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTF  130 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~  130 (169)
                      .+.++.+.    ...++| |..     +||++|++....|.+.         ++.+..+|++.++++.    +..+...+
T Consensus        13 ~~~~~~~~----~~~~lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~----~~~~v~~~   79 (111)
T 3uvt_A           13 NNFDDTIA----EGITFIKFYA-----PWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNIC----SKYSVRGY   79 (111)
T ss_dssp             TTHHHHHH----SSEEEEEEEC-----SSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHH----HHTTCCSS
T ss_pred             hhHHHHhc----CCcEEEEEEC-----CCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHH----HhcCCCcc
Confidence            34455544    344444 554     7999999988866432         4557778888776643    34467889


Q ss_pred             cEEEe--CCeEee
Q 030914          131 PQIFI--KGEFIG  141 (169)
Q Consensus       131 P~vfi--~g~~iG  141 (169)
                      |.+++  +|+.+.
T Consensus        80 Pt~~~~~~g~~~~   92 (111)
T 3uvt_A           80 PTLLLFRGGKKVS   92 (111)
T ss_dssp             SEEEEEETTEEEE
T ss_pred             cEEEEEeCCcEEE
Confidence            98866  887554

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=97.83  E-value=3.5e-05  Score=61.15  Aligned_cols=78  Identities=18%  Similarity=0.163  Sum_probs=58.1

Q ss_pred             hcCCeEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           72 KENPVMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        72 ~~~~Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      ++..+.||.+...   ..+.||+|.+++-+|...||+|+.+.|+... ...++.+.+...++|.+..||..|.....+..
T Consensus        15 ~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~~~g~~l~ES~aI~~   93 (267)
T 2ahe_A           15 KEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLAPGTHPPFITFNSEVKTDVNKIEE   93 (267)
T ss_dssp             -CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHSTTCCSCEEEETTEEECCHHHHHH
T ss_pred             cCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhCCCCCCCEEEECCEEecCHHHHHH
Confidence            4567999943221   2368999999999999999999988886431 12456677778899999999998887766655


Q ss_pred             HH
Q 030914          149 MH  150 (169)
Q Consensus       149 ~~  150 (169)
                      ..
T Consensus        94 YL   95 (267)
T 2ahe_A           94 FL   95 (267)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.82  E-value=4.8e-05  Score=51.36  Aligned_cols=73  Identities=12%  Similarity=0.216  Sum_probs=47.8

Q ss_pred             ccHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           61 LSLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        61 ~~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      ++..+.+......+ .++|+..+    +||++|+.....|++.     ++.+..+|++.++++.+.+    |...+|.++
T Consensus        13 ~~~~~~~~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~----~v~~~Pt~~   84 (113)
T 1ti3_A           13 DTWKEHFEKGKGSQKLIVVDFTA----SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW----NVEAMPTFI   84 (113)
T ss_dssp             HHHHHHHHHHTTSSSEEEEEEEC----SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHH----HCSSTTEEE
T ss_pred             HHHHHHHHHhhhcCCeEEEEEEC----CCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhC----CCCcccEEE
Confidence            34555555544333 44444333    7999999988776543     5778888988887665444    456788887


Q ss_pred             e--CCeEee
Q 030914          135 I--KGEFIG  141 (169)
Q Consensus       135 i--~g~~iG  141 (169)
                      +  +|+.+.
T Consensus        85 ~~~~G~~~~   93 (113)
T 1ti3_A           85 FLKDGKLVD   93 (113)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCEEEE
Confidence            6  888653

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.82  E-value=0.00018  Score=48.77  Aligned_cols=69  Identities=9%  Similarity=0.253  Sum_probs=48.0

Q ss_pred             HHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--C
Q 030914           65 EVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--K  136 (169)
Q Consensus        65 ~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~  136 (169)
                      +.+++++..+ .++|+..+    +||++|++....|++.     ++.+..+|++.++++.    +..+...+|.+++  +
T Consensus        15 ~~f~~~~~~~k~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~   86 (109)
T 3f3q_A           15 SEFDSAIAQDKLVVVDFYA----TWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVA----QKNEVSAMPTLLLFKN   86 (109)
T ss_dssp             HHHHHHTTSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSSEEEEEET
T ss_pred             HHHHHHHhcCCEEEEEEEC----CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHcCCCccCEEEEEEC
Confidence            4455555544 44544433    7999999998877553     5778889998877643    4457788999876  8


Q ss_pred             CeEee
Q 030914          137 GEFIG  141 (169)
Q Consensus       137 g~~iG  141 (169)
                      |+.+.
T Consensus        87 G~~~~   91 (109)
T 3f3q_A           87 GKEVA   91 (109)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            87665

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.82  E-value=0.00011  Score=48.35  Aligned_cols=60  Identities=15%  Similarity=0.232  Sum_probs=43.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ..++++..+    +|||+|+.....|++.     ++.+..+|++.++++.    +..+...+|.+++  +|+.+.
T Consensus        17 ~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~   83 (104)
T 2e0q_A           17 EIAVVDFWA----EWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIA----ARYGVMSLPTVIFFKDGEPVD   83 (104)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCSSCEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHHH----HhCCccccCEEEEEECCeEhh
Confidence            345444443    7999999998877542     4788889998876643    3446778999988  888654

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.78  E-value=1.8e-06  Score=59.28  Aligned_cols=40  Identities=25%  Similarity=0.352  Sum_probs=36.0

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      +++|++|+|..|.|+++.++..+|.+.+++|.. ||..|++
T Consensus        19 vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~   59 (105)
T 2yan_A           19 VMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEE   59 (105)
T ss_dssp             EEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHH
T ss_pred             EEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHH
Confidence            568999999999999999999999999999987 8877654

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=97.78  E-value=7.9e-05  Score=57.01  Aligned_cols=70  Identities=14%  Similarity=0.054  Sum_probs=56.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC--CCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL--EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~--~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.+||..     +.||+|++++-+|...||+|+.+.|+  ..+....++.+.+...++|.+..||..|.....+...
T Consensus         3 kpiLY~~-----~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~eS~aI~~Y   74 (228)
T 4hi7_A            3 KPILYGI-----DASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLEDGDANIADSHAIMAY   74 (228)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             ceEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCCCCceeeEEECCEEEechHHHHHH
Confidence            4578987     78999999999999999999987765  3444456677788888999999999988876655554

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.77  E-value=7e-05  Score=52.85  Aligned_cols=73  Identities=12%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             ccHHHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           61 LSLKEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        61 ~~~~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      ++..+.+.... ....++|+..+    +||++|++....|++.     ++.+..+|++.++++.    +..|-..+|.++
T Consensus        33 ~~~~~~~~~~~~~~k~vvv~f~a----~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~Pt~~  104 (139)
T 3d22_A           33 ERWDQKLSEASRDGKIVLANFSA----RWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSDFS----ASWEIKATPTFF  104 (139)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTTCCEESEEE
T ss_pred             HHHHHHHHHHhhcCCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHHHH----HHcCCCcccEEE
Confidence            34555555443 34455555443    7999999988877553     5888889998876643    344677889775


Q ss_pred             e--CCeEee
Q 030914          135 I--KGEFIG  141 (169)
Q Consensus       135 i--~g~~iG  141 (169)
                      +  +|+.++
T Consensus       105 ~~~~G~~~~  113 (139)
T 3d22_A          105 FLRDGQQVD  113 (139)
T ss_dssp             EEETTEEEE
T ss_pred             EEcCCeEEE
Confidence            5  787553

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=97.77  E-value=6.4e-05  Score=56.34  Aligned_cols=70  Identities=11%  Similarity=-0.021  Sum_probs=56.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...||+|+.+.++..  +....++.+.+...++|.+..||..|.+...+...
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   73 (209)
T 1axd_A            2 PMKLYGA-----VMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKY   73 (209)
T ss_dssp             CEEEESC-----TTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             ceEEEeC-----CCCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCcCCCCCeEEECCEEEecHHHHHHH
Confidence            4678877     7899999999999999999999888643  23345666777788999999999999887665554

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.76  E-value=0.00012  Score=49.42  Aligned_cols=60  Identities=22%  Similarity=0.220  Sum_probs=40.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcC-CCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNIL-EDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~-~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .+++|+..+    +|||+|++....|++.     ++.+..+|++ .++++.    +..+...+|.+++  +|+.++
T Consensus        25 ~~vlv~f~a----~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   92 (111)
T 2pu9_C           25 KPVVLDMFT----QWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLA----KELGIRVVPTFKILKENSVVG   92 (111)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHH----HHHCCSBSSEEEEESSSSEEE
T ss_pred             CEEEEEEEC----CcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHHHH----HHcCCCeeeEEEEEeCCcEEE
Confidence            445544433    7999999988877542     5778888887 455543    3346788999777  787543

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=97.76  E-value=6.1e-05  Score=58.60  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=57.1

Q ss_pred             cCCeEEEeecCC---CCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVP---EFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~---~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +..+.+|.+...   ....||+|.+++-+|...||+|+.+.|+.. ...+++.+.+...++|.+..||..|.....+...
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~eS~aI~~y   83 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEF   83 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            457889987411   224799999999999999999998888643 2234566677788999999999888776665554

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=97.76  E-value=0.00012  Score=55.71  Aligned_cols=72  Identities=15%  Similarity=0.079  Sum_probs=57.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH----HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP----ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~----~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      +.++.||..     +.||+|.+++-+|...||+|+.+.|+...    ....++.+.+...++|.+..||..|.....+..
T Consensus        10 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   84 (223)
T 2cz2_A           10 AGKPILYSY-----FRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIME   84 (223)
T ss_dssp             -CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHH
T ss_pred             cCceEEEec-----CCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEEECCEEEeeHHHHHH
Confidence            356889987     67999999999999999999999887532    234567777888899999999988887665555


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        85 y   85 (223)
T 2cz2_A           85 Y   85 (223)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.74  E-value=0.00023  Score=49.01  Aligned_cols=69  Identities=16%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             HHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--
Q 030914           65 EVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        65 ~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      ++.+.+.++ .+++|+..+    +||++|++....|.+    +  ++.+..+|++.++++    .+..+...+|.+++  
T Consensus        22 ~f~~~v~~~~k~vlv~f~a----~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~   93 (119)
T 1w4v_A           22 DFQDRVVNSETPVVVDFHA----QWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDL----AIEYEVSAVPTVLAMK   93 (119)
T ss_dssp             HHHHHTTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHHH----HHHTTCCSSSEEEEEE
T ss_pred             hHHHHHHcCCCcEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHHH----HHHcCCCcccEEEEEe
Confidence            333334443 345544443    799999998876654    2  477888898877654    34456788999988  


Q ss_pred             CCeEee
Q 030914          136 KGEFIG  141 (169)
Q Consensus       136 ~g~~iG  141 (169)
                      +|+.+.
T Consensus        94 ~G~~~~   99 (119)
T 1w4v_A           94 NGDVVD   99 (119)
T ss_dssp             TTEEEE
T ss_pred             CCcEEE
Confidence            898653

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=97.74  E-value=0.00012  Score=56.62  Aligned_cols=74  Identities=9%  Similarity=0.019  Sum_probs=58.2

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      ..+.++.||..     +.||+|.+++-+|...||+|+.+.|+.  .+....++.+.+...++|.+..||..|.....+..
T Consensus        22 s~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~   96 (243)
T 3qav_A           22 ATTSKPFVYWG-----SGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVVNESTAICM   96 (243)
T ss_dssp             ---CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEECSHHHHHH
T ss_pred             cccCccEEEeC-----CCCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCEEEECCEEEecHHHHHH
Confidence            34567999987     689999999999999999999888764  33445667788888899999999988877655554


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        97 Y   97 (243)
T 3qav_A           97 Y   97 (243)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=97.74  E-value=8.4e-05  Score=56.26  Aligned_cols=70  Identities=20%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +.||+|.+++-+|...||+|+.+.++.. ....++.+.+...++|.+..||..|.....+...
T Consensus         9 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   78 (213)
T 1yy7_A            9 SVMTLFSG-----PTDIFSHQVRIVLAEKGVSVEIEQVEAD-NLPQDLIDLNPYRTVPTLVDRELTLYESRIIMEY   78 (213)
T ss_dssp             SSEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCTT-SCCHHHHHHCTTCCSSEEEETTEEEESHHHHHHH
T ss_pred             CceEEEcC-----CCChhHHHHHHHHHHcCCCCeEEeCCcc-cCcHHHHHHCCCCCCCEEEECCEEEecHHHHHHH
Confidence            45889987     6899999999999999999999988742 2234566677788999999999888877665554

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=97.74  E-value=5e-05  Score=60.13  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=54.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHH-HHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSA-VKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~-l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      +...+.||..     +.||||+++.-+|.+.||+|+.+.|+-...--+. +.+.+...++|.+-+ ||..|.....+.+.
T Consensus         3 ~p~~~~LY~~-----~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~Y   77 (265)
T 4g10_A            3 EPQELTIYHI-----PGCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILRY   77 (265)
T ss_dssp             CCCCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHHH
T ss_pred             CCCceEEEec-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHHH
Confidence            3457899988     7899999999999999999998888642211122 345677889999987 67777765555544

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=97.72  E-value=6.4e-05  Score=56.95  Aligned_cols=69  Identities=12%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...|++|+.+.|+.. ....++.+.+...++|.+..||..|.....+...
T Consensus         8 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   76 (215)
T 3lyp_A            8 RLACYSD-----PADHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVNPYGSLPTLVDRDLALWESTVVMEY   76 (215)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHCTTCCSSEEECC-CEEESHHHHHHH
T ss_pred             CeEEEeC-----CCCchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHCCCCCcCeEEECCEEeecHHHHHHH
Confidence            7889988     7899999999999999999999988644 2335567778889999999999988876665554

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=97.72  E-value=0.00014  Score=55.13  Aligned_cols=71  Identities=14%  Similarity=0.041  Sum_probs=56.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.++..  +....++++.+...++|.+..||..|.....+...
T Consensus         7 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   79 (221)
T 1e6b_A            7 EKLKLYSY-----WRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMY   79 (221)
T ss_dssp             -CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHH
T ss_pred             CCeEEEec-----CCCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            46889987     6799999999999999999999888642  23445677788888999999999888876655554

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.72  E-value=9.5e-05  Score=49.33  Aligned_cols=51  Identities=12%  Similarity=0.208  Sum_probs=37.0

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEee
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iG  141 (169)
                      +||++|+.....|.+.      .+.+..+|++.++++.    +..+...+|.++  -+|+.++
T Consensus        31 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g~~~~   89 (109)
T 3tco_A           31 EWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA----DKYSVLNIPTTLIFVNGQLVD   89 (109)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHH----HhcCcccCCEEEEEcCCcEEE
Confidence            7999999988766433      3678888998887653    344678899854  4887554

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.72  E-value=0.00013  Score=55.01  Aligned_cols=68  Identities=13%  Similarity=0.057  Sum_probs=54.2

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .||..     +.||+|.+++-+|...|++|+.+.++.  .+....++.+.+...++|.+..||..|.....+...
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   71 (209)
T 1pn9_A            2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGFALWESRAIQIY   71 (209)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSSEEEETTEEEESHHHHHHH
T ss_pred             eEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCCCCCCCEEEECCEEEEeHHHHHHH
Confidence            57776     689999999999999999999988863  223335677778888999999999888877665554

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.72  E-value=0.00014  Score=50.39  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=45.6

Q ss_pred             HHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--
Q 030914           66 VVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        66 ~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      .+++++..+ .++|+..+    +||++|+.....|++.       ++.+..+|++.++++.+.    .+...+|.+++  
T Consensus        25 ~f~~~l~~~k~vvv~f~a----~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~----~~v~~~Pt~~~~~   96 (121)
T 2j23_A           25 QFKQVTGGDKVVVIDFWA----TWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQE----VGIRAMPTFVFFK   96 (121)
T ss_dssp             HHHHHHSSSSCEEEEEEC----TTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHH----HTCCSSSEEEEEE
T ss_pred             HHHHHHcCCCEEEEEEEC----CCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHH----cCCCcccEEEEEE
Confidence            344444443 45555443    7999999998877642       277888899888765443    35678898866  


Q ss_pred             CCeEee
Q 030914          136 KGEFIG  141 (169)
Q Consensus       136 ~g~~iG  141 (169)
                      +|+.+.
T Consensus        97 ~G~~~~  102 (121)
T 2j23_A           97 NGQKID  102 (121)
T ss_dssp             TTEEEE
T ss_pred             CCeEEe
Confidence            887653

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.71  E-value=0.00029  Score=47.46  Aligned_cols=60  Identities=17%  Similarity=0.337  Sum_probs=42.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ..++|+..+    +|||+|++....|++    +  .+.+..+|++.++++.    +..+...+|.+++  +|+.++
T Consensus        26 ~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   93 (115)
T 1thx_A           26 QPVLVYFWA----SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTV----KKYKVEGVPALRLVKGEQILD   93 (115)
T ss_dssp             SCEEEEEEC----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             ceEEEEEEC----CCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHHHH----HHcCCCceeEEEEEcCCEEEE
Confidence            445544443    799999998877654    2  3778889998877643    3446788999988  888654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.69  E-value=0.00041  Score=46.22  Aligned_cols=59  Identities=24%  Similarity=0.399  Sum_probs=41.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      .+++++..+    +|||+|++....|++    +  ++.+..+|++.++++.+.    .|...+|.+++  +|+.+
T Consensus        20 ~~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~v~~~Pt~~~~~~G~~~   86 (107)
T 1dby_A           20 VPVLVDFWA----PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASE----YGIRSIPTIMVFKGGKKC   86 (107)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHH----HTCCSSCEEEEESSSSEE
T ss_pred             CcEEEEEEC----CCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHH----CCCCcCCEEEEEeCCEEE
Confidence            345544443    799999998877754    3  377888888887765443    36778999877  78753

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.69  E-value=7.5e-05  Score=51.18  Aligned_cols=51  Identities=14%  Similarity=0.230  Sum_probs=37.2

Q ss_pred             CCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           87 PQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      +||+.|+.....|++.     ++.+-.+|++.++++.    +..|-.++|.+  |-+|+.++
T Consensus        30 ~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~----~~~~V~~~PT~~~~~~G~~v~   87 (105)
T 3zzx_A           30 TWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIA----QDNQIACMPTFLFMKNGQKLD   87 (105)
T ss_dssp             TTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHH----HHTTCCBSSEEEEEETTEEEE
T ss_pred             CCCCCccCCCcchhhhhhccCCeEEEEEecccCHHHH----HHcCCCeecEEEEEECCEEEE
Confidence            7999999998877543     3567788998887653    44467788886  44887553

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.69  E-value=5.3e-05  Score=52.58  Aligned_cols=60  Identities=12%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc------CCCCeEEEE--cCCCHHHHHHHHHhcCCCCCcEEEe---CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA------YNVPISARN--ILEDPELKSAVKAFSHWPTFPQIFI---KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~------~~v~~~~~d--i~~~~~~~~~l~~~~g~~t~P~vfi---~g~~iG  141 (169)
                      ..++|+..+    +||++|++....|.+      .++.+..+|  ++.+++    +.+..|...+|.+++   +|+.+.
T Consensus        27 k~~lv~f~a----~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~----~~~~~~v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           27 IPTIIMFKT----DTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKNID----LAYKYDANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             SCEEEEEEC----SSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHHHH----HHHHTTCCSSSEEEEECTTCCEEE
T ss_pred             CcEEEEEEC----CCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCchHH----HHHHcCCcceeEEEEECCCCCEEE
Confidence            345544433    799999998887754      357777888  544433    444457789999988   887643

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=97.68  E-value=0.0002  Score=53.79  Aligned_cols=69  Identities=12%  Similarity=0.147  Sum_probs=56.1

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh--cCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF--SHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~--~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +.||+|.+++-+|...||+|+.+.++.+.  ..++++.  +...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   72 (207)
T 1zl9_A            2 VSYKLTYF-----NGRGAGEVSRQIFAYAGQQYEDNRVTQEQ--WPALKETCAAPFGQLPFLEVDGKKLAQSHAIARF   72 (207)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHHHTTCSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CceEEEEc-----CCCchHHHHHHHHHHcCCCceEEEecHHH--HHHHhhccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            45788887     67999999999999999999999887432  3567777  7778999999999888877665554

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.67  E-value=0.00013  Score=48.60  Aligned_cols=51  Identities=12%  Similarity=0.275  Sum_probs=38.3

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +|||+|+.....|++.      ++.+..+|++.++++    .+..+...+|.+++  +|+.+.
T Consensus        28 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~g~~~~   86 (109)
T 2yzu_A           28 EWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKT----AMRYRVMSIPTVILFKDGQPVE   86 (109)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhH----HHhCCCCcCCEEEEEeCCcEee
Confidence            7999999988776543      477888888887764    33446788999988  888654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.67  E-value=0.0002  Score=47.64  Aligned_cols=60  Identities=22%  Similarity=0.361  Sum_probs=42.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .+++++..+    +|||+|++....|++    +  .+.+..+|++.++++.    +..|...+|.+++  +|+.+.
T Consensus        18 ~~~~v~f~~----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   85 (105)
T 1nsw_A           18 GPVLVDFWA----AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETT----SQFGIMSIPTLILFKGGRPVK   85 (105)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHHH----HHcCCccccEEEEEeCCeEEE
Confidence            345444433    799999998887654    2  3778888988876643    3446788999988  888543

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=97.67  E-value=0.00013  Score=56.15  Aligned_cols=75  Identities=13%  Similarity=0.158  Sum_probs=51.2

Q ss_pred             CCeEEEeec----CCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh-----------cCCCCCcEEEe--C
Q 030914           74 NPVMLYMKG----VPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF-----------SHWPTFPQIFI--K  136 (169)
Q Consensus        74 ~~Vvly~k~----~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~-----------~g~~t~P~vfi--~  136 (169)
                      .+|++|--.    ....|+||||.+++-+|..+||+|+.+.|+-. +....+...           +...++|.+..  +
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~-~~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~   81 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYP-DIAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNT   81 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTCCEEEEECCGG-GHHHHHHHHTCCCSEECTTCCEECCSCEEEETTT
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCCCCEEEEEccc-cchhhhhhcCCCCchhhHhhCCCCccCeEEeCCC
Confidence            478999321    11358999999999999999999999988632 223333332           23458999987  5


Q ss_pred             CeEeeccHHHHHH
Q 030914          137 GEFIGGSDIILNM  149 (169)
Q Consensus       137 g~~iGG~d~l~~~  149 (169)
                      |..|.....+.+.
T Consensus        82 g~~l~ES~aI~~Y   94 (253)
T 4f03_A           82 KKVVEDSAAIAKY   94 (253)
T ss_dssp             TEEEESHHHHHHH
T ss_pred             CEEEecHHHHHHH
Confidence            6777765554443

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=97.67  E-value=0.00012  Score=55.06  Aligned_cols=70  Identities=21%  Similarity=0.152  Sum_probs=55.5

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++..  +....++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   73 (214)
T 2v6k_A            2 KMKLYNF-----WRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEW   73 (214)
T ss_dssp             CCEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECSSCEEECHHHHHHH
T ss_pred             eeEEEec-----CCCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCCCCcCCEEEECCEEEecHHHHHHH
Confidence            4678877     6799999999999999999999888643  23445677778888999998888888776655554

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.67  E-value=0.00011  Score=52.01  Aligned_cols=48  Identities=13%  Similarity=0.125  Sum_probs=36.7

Q ss_pred             CCCccHHHHHHHHhcCC----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe----CCe
Q 030914           87 PQCGFSSLAVRVLGAYN----VPISARNILEDPELKSAVKAFSHWPTFPQIFI----KGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~----v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi----~g~  138 (169)
                      +||+.|++....|++..    +.+..+|++.++++.    +..+...+|.+++    +|+
T Consensus        50 ~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           50 VWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPKLN----DQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             TTCHHHHHTHHHHHGGGGTEECEEEEEETTTCHHHH----HHTTCCSSSEEEEEEEETTE
T ss_pred             CCCHHHHHHHHHHHHHHHhcCEEEEEEeccchHHHH----HhcCCCCCCEEEEEEecCCC
Confidence            79999999999887653    667778888776543    3446788999865    887

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=97.66  E-value=7.1e-05  Score=57.66  Aligned_cols=72  Identities=18%  Similarity=0.105  Sum_probs=57.1

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      .++.+.||..     +.||+|.+++-+|...|++|+.+.|+... ..+++.+.+...++|.+.. ||..+.....+...
T Consensus        20 ~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   92 (241)
T 3vln_A           20 PEGSIRIYSM-----RFSPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEY   92 (241)
T ss_dssp             CTTCEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHCTTCCSCEEECTTCCEEESHHHHHHH
T ss_pred             CCCeEEEEcC-----CCCcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence            3457899988     78999999999999999999999886432 1234566777889999999 88888876665554

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=97.64  E-value=0.00015  Score=55.13  Aligned_cols=71  Identities=17%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...|++|+.+.++..  +....++.+.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   74 (221)
T 2imi_A            2 SNLVLYTL-----HLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIY   74 (221)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEeeC-----CCCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCcCCCCCEEEECCEEEeeHHHHHHH
Confidence            35789987     6899999999999999999999888632  23345566777888999998889888877665554

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=97.64  E-value=0.00021  Score=53.40  Aligned_cols=69  Identities=14%  Similarity=0.064  Sum_probs=56.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...|++|+.+.++.  +-..++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~~e~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   70 (206)
T 2on7_A            2 VHYKLTYF-----AIRGAGECARQIFALADQEFEDVRLDK--EQFAKVKPDLPFGQVPVLEVDGKQLAQSLAICRY   70 (206)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHH
T ss_pred             CceEEEEc-----CCCcchHHHHHHHHHcCCCeeEEEecH--HHHHHhCcCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            35788887     679999999999999999999998873  2235677778888999999999988877655554

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=97.64  E-value=8.1e-05  Score=55.86  Aligned_cols=70  Identities=10%  Similarity=0.003  Sum_probs=55.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++..  +....++.+.+...++|.+..||..|.....+...
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   73 (211)
T 1gnw_A            2 GIKVFGH-----PASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQY   73 (211)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eeEEEeC-----CCCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEECCEEEeCHHHHHHH
Confidence            4778987     7899999999999999999999888642  22334455667778999999999988876665554

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=97.64  E-value=0.00012  Score=55.83  Aligned_cols=67  Identities=12%  Similarity=0.152  Sum_probs=55.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.|..+  ...++.+.+...++|.+..+|..|.....+...
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~y   69 (229)
T 3lxz_A            3 LKLYGF-----SVSNYYNMVKLALLEKGLTFEEVTFYGG--QAPQALEVSPRGKVPVLETEHGFLSETSVILDY   69 (229)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCCC--SCHHHHTTSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEEeC-----CCCchHHHHHHHHHHcCCCCEEEecCCC--CCHHHHhhCCCCCcCeEEeCCceeecHHHHHHH
Confidence            678887     7899999999999999999999999533  345567778888999999999888876655554

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=97.64  E-value=0.0002  Score=53.94  Aligned_cols=71  Identities=14%  Similarity=0.086  Sum_probs=55.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...||+|+.+.|+.......++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   72 (210)
T 2a2r_A            2 PPYTVVYF-----PVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRH   72 (210)
T ss_dssp             CSEEEEEC-----SSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CceEEEEe-----CCcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            35778887     679999999999999999999999864322223566677788999999999888876655554

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=97.63  E-value=0.00014  Score=55.18  Aligned_cols=69  Identities=14%  Similarity=0.160  Sum_probs=56.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+.||..     +.||+|.+++-+|...|++|+.+.|+... ...++.+.+...++|.+..||..|.....+...
T Consensus         6 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   74 (216)
T 3lyk_A            6 VMTLFSN-----KDDIYCHQVKIVLAEKGVLYENAEVDLQA-LPEDLMELNPYGTVPTLVDRDLVLFNSRIIMEY   74 (216)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             eEEEEeC-----CCChhHHHHHHHHHHcCCCcEEEeCCccc-CcHHHHhhCCCCCcCeEEECCeEecCHHHHHHH
Confidence            4788987     78999999999999999999999887532 234567778889999999999988877665554

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=97.63  E-value=0.00014  Score=54.91  Aligned_cols=71  Identities=14%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             CCeEEEeecCCCCC--CCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFP--QCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~--~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +  .||+|.+++-+|...|++|+.+.|+..  +....++.+.+...++|.+..||..|.....+...
T Consensus         5 ~~~~Ly~~-----~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   79 (215)
T 3bby_A            5 PAITLWSD-----AHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEY   79 (215)
T ss_dssp             CCEEEEEE-----TTSCCHHHHHHHHHHHHHTCCCEEEEEC------------------CCCEEEETTEEEESHHHHHHH
T ss_pred             CCEEEEec-----CCCCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCCCCCCCEEEeCCeEeecHHHHHHH
Confidence            46889987     4  799999999999999999998888642  23345566777778999999999888876655553

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=97.63  E-value=0.0002  Score=54.29  Aligned_cols=70  Identities=13%  Similarity=0.041  Sum_probs=54.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC-CCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW-PTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~-~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...|++|+.+.++.. ....++.+.+.. .++|.+..||..+.....+...
T Consensus         3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~y   73 (219)
T 2vo4_A            3 DEVVLLDF-----WPSPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQY   73 (219)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHCTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEEec-----cCCchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhCCCCCcCCEEEECCEeeehHHHHHHH
Confidence            36889987     6799999999999999999999888642 112345556664 6999999999888876665554

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=97.63  E-value=0.00016  Score=54.08  Aligned_cols=69  Identities=13%  Similarity=0.058  Sum_probs=55.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...||+|+.+.|+.+.  ..++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   70 (204)
T 2ws2_A            2 VHYKLTYF-----NGRGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASMPFGQLPVLEVDGKQLPQSVAIVRY   70 (204)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CccEEEEe-----CCCchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcCCCCCCCEEEECCEEeecHHHHHHH
Confidence            35788887     67999999999999999999999887432  24566677788999999999988887665554

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=97.62  E-value=0.00013  Score=54.60  Aligned_cols=69  Identities=10%  Similarity=-0.032  Sum_probs=55.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...|++|+.+.++.+.  ..++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   70 (206)
T 2on5_A            2 VHYKLTYF-----AGRGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEMPFGQIPVLEEDGKQLAQSFAIARY   70 (206)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEEec-----CCCcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            45788887     67999999999999999999999887432  24566677788999999999988876655554

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=97.62  E-value=0.00032  Score=52.71  Aligned_cols=68  Identities=13%  Similarity=0.129  Sum_probs=54.6

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC-HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED-PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~-~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .||..     +.||+|.+++-+|...|++|+.+.++.. .+...++.+.+...++|.+..||..|.+...+...
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   70 (210)
T 1v2a_A            2 DYYYS-----LISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLY   70 (210)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             eEEeC-----CCCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCCCCCcCeEEECCEEEEcHHHHHHH
Confidence            57776     6899999999999999999999888642 22227777888888999999999888877665554

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=97.62  E-value=5.5e-05  Score=57.10  Aligned_cols=70  Identities=16%  Similarity=0.128  Sum_probs=54.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH--HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP--ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~--~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...||+|+.+.++...  ....++.+.+...++|.+..||..|.+...+...
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   73 (216)
T 1aw9_A            2 PLKLYGM-----PLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRY   73 (216)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             ceEEEec-----CCCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCCCCCcCEEEECCEEeeCHHHHHHH
Confidence            5778887     78999999999999999999998876321  1223455667788999999999988887665554

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=97.62  E-value=0.00013  Score=55.87  Aligned_cols=74  Identities=14%  Similarity=0.026  Sum_probs=56.0

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      +-+.-+.||..     +.||+|.+++-+|...|++|+.+.|+..  +....++.+.+...++|.+..||..|.....+..
T Consensus        19 ~m~~m~~Ly~~-----~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~   93 (229)
T 4iel_A           19 YFQSMLHILGK-----IPSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNPNGLVPVIKDDGFVLWESNTIIR   93 (229)
T ss_dssp             ---CCEEEESC-----TTCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCTTCCSCEEEETTEEEECHHHHHH
T ss_pred             cccceEEEecC-----CCCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCCCCCCCEEEECCEEEEeHHHHHH
Confidence            34455889987     6899999999999999999999888642  3345567778888899999999999987766555


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        94 y   94 (229)
T 4iel_A           94 Y   94 (229)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=97.62  E-value=0.00022  Score=53.36  Aligned_cols=69  Identities=16%  Similarity=0.101  Sum_probs=55.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...||+|+.+.++.  +-..++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   70 (206)
T 1tw9_A            2 VHYKLTYF-----NGRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFPFGQVPVLEVDGQQLAQSQAICRY   70 (206)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CceEEEEc-----CCCccHHHHHHHHHHcCCCceEEEeCH--HHHHHHcccCCCCCCCEEEECCEEEecHHHHHHH
Confidence            35788887     679999999999999999999998863  2234566677788999999999988887665554

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=97.62  E-value=0.00015  Score=54.84  Aligned_cols=71  Identities=18%  Similarity=0.118  Sum_probs=56.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...|++|+.+.++..  +....++.+.+...++|.+..||..+.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   74 (216)
T 3ay8_A            2 SSLKLYHF-----PVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACY   74 (216)
T ss_dssp             CCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSSSCCSSEEEETTEEEECHHHHHHH
T ss_pred             CceEEecC-----CCCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCCCCCCCeEEECCEEEEcHHHHHHH
Confidence            35788887     6899999999999999999999888642  22335577778788999999999888876655554

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=97.61  E-value=0.00017  Score=55.33  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=55.4

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC-CCCcEEEeCCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW-PTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~-~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.++.||..     +.||+|.+++-+|...||+|+.+.++.. ....++.+.+.. .++|.+..||..|.....+...
T Consensus         4 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~y   75 (231)
T 1oyj_A            4 EKELVLLDF-----WVSPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQY   75 (231)
T ss_dssp             SCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCceEEEeC-----CCChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            467889987     6899999999999999999999888642 122345566665 6999999999888876655554

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=97.61  E-value=0.00021  Score=53.91  Aligned_cols=71  Identities=13%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH-----hcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA-----FSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~-----~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      ..+.||..     +.||+|.+++-+|...||+|+.+.++-..+...++++     .+...++|.+..||..|.....+..
T Consensus         3 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~   77 (211)
T 1okt_A            3 DNIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR   77 (211)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHH
T ss_pred             CccEEEEE-----CCCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCCCCCCCEEEECCEEeehHHHHHH
Confidence            35788987     6799999999999999999999888522122455666     7778899999999988887665555


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        78 y   78 (211)
T 1okt_A           78 Y   78 (211)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.59  E-value=0.0003  Score=47.39  Aligned_cols=50  Identities=28%  Similarity=0.345  Sum_probs=37.2

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +|||+|++....|.+    +  ++.+..+|++.++++.    +..|...+|.+++  +|+.+
T Consensus        33 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~   90 (112)
T 1t00_A           33 AWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGTA----AKYGVMSIPTLNVYQGGEVA   90 (112)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEE
T ss_pred             CCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHHH----HhCCCCcccEEEEEeCCEEE
Confidence            799999988876654    3  4778888988877643    3446778999877  88764

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.58  E-value=0.00024  Score=47.23  Aligned_cols=51  Identities=24%  Similarity=0.434  Sum_probs=38.8

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +||++|++....|.+.      ++.+..+|++.++++.    +..|...+|.+++  +|+.++
T Consensus        30 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           30 EWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPETP----NAYQVRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHHH----HhcCCCccCEEEEEeCCEEEE
Confidence            7999999988877542      4778888988877643    3446788999988  998764

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=97.58  E-value=0.00031  Score=52.35  Aligned_cols=69  Identities=12%  Similarity=0.059  Sum_probs=55.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++.+  -..++++.+...++|.+..||..|.....+....
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   70 (198)
T 2cvd_A            2 NYKLTYF-----NMRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYL   70 (198)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CcEEEEc-----CCCchHHHHHHHHHHcCCCceEEEeCHH--HHHHhccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            4678877     6799999999999999999999888642  2456777777889999999998888876655543

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=97.58  E-value=0.00014  Score=54.52  Aligned_cols=70  Identities=16%  Similarity=0.051  Sum_probs=54.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++.||..     +.||+|.+++-+|...||+|+.+.++-.. ...++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~~e~~~v~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   71 (208)
T 1yq1_A            2 PSYKLTYF-----FFRGLGEPIRLLFHLAGVQFEEVRMNPDQ-TWLDIKDSTPMKQLPVLNIDGFELPQSGAILRY   71 (208)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECTTT-CCHHHHHTSTTSCSCEEEESSCEECCHHHHHHH
T ss_pred             CceEEEEe-----CCCCchHHHHHHHHHcCCCeEEEEecccc-hhhhhhccCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            35788887     67999999999999999999998886311 123566777788999999999888876655553

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.57  E-value=0.00043  Score=48.30  Aligned_cols=72  Identities=13%  Similarity=0.184  Sum_probs=48.3

Q ss_pred             ccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHh--c------CCCCeEEEEc---CCCHHHHHHHHHhcCC-
Q 030914           61 LSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLG--A------YNVPISARNI---LEDPELKSAVKAFSHW-  127 (169)
Q Consensus        61 ~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~--~------~~v~~~~~di---~~~~~~~~~l~~~~g~-  127 (169)
                      .++++.+...... .+|+|+..+    +||++|++....|.  +      .++.+..+|+   +.++++    .+..+. 
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l----~~~~~v~   87 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGA----NWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLEL----SQAYGDP   87 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHH----HHHTTCG
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcC----CCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHH----HHHhCCc
Confidence            4566667666543 455555544    79999999998887  2      2477788888   555543    344456 


Q ss_pred             --CCCcEEEe---CCeEe
Q 030914          128 --PTFPQIFI---KGEFI  140 (169)
Q Consensus       128 --~t~P~vfi---~g~~i  140 (169)
                        ..+|.+++   +|+.+
T Consensus        88 ~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           88 IQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             GGGCSSEEEEECTTSCEE
T ss_pred             cCCccceEEEECCCCCEE
Confidence              78998865   78766

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.57  E-value=0.0001  Score=49.46  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=33.1

Q ss_pred             CCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +||++|++....|++.     ++.+..+|++.++++.+.    .+-..+|.+++  +|+.+.
T Consensus        28 ~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~----~~v~~~Pt~~~~~~G~~~~   85 (105)
T 4euy_A           28 ENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAGR----YAVFTGPTVLLFYNGKEIL   85 (105)
T ss_dssp             SSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC-------------CCCCEEEEEETTEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHHh----cCCCCCCEEEEEeCCeEEE
Confidence            7999999988877552     567788899888765443    35678898755  888763

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.57  E-value=0.00032  Score=47.81  Aligned_cols=60  Identities=17%  Similarity=0.355  Sum_probs=42.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .+++|+..+    +||++|++....|.+    +  ++.+..+|++.++++.    +..+...+|.+++  +|+.+.
T Consensus        31 ~~~lv~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           31 KPVLVDFWA----TWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETA----RNFQVVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHH----HhcCCCcCCEEEEEECCEEEE
Confidence            345444443    799999999887754    2  4778888998877643    3446778899877  887653

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.57  E-value=0.00021  Score=47.74  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=37.6

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +||++|+.....|++    +  ++.+..+|++.++++.    +..|...+|.+++  +|+.+
T Consensus        30 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~G~~~   87 (108)
T 2trx_A           30 EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTHH----HHTTCCSSSEEEEEETTEEE
T ss_pred             CCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHHH----HHcCCcccCEEEEEeCCEEE
Confidence            799999998877654    2  3667788888877643    3346788999988  88864

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=97.55  E-value=0.00027  Score=53.02  Aligned_cols=72  Identities=17%  Similarity=0.110  Sum_probs=56.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNMHQ  151 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~~~  151 (169)
                      .+.||..     +.||+|.+++-+|...|++|+.+.++.  .+....++.+.+...++|.+.+ ||..|.....+.....
T Consensus         3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~   77 (210)
T 3m3m_A            3 LYKVYGD-----YRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTCLWESNAILNFLA   77 (210)
T ss_dssp             CEEEEEC-----TTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHH
T ss_pred             eEEEeCC-----CCCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHh
Confidence            4778887     689999999999999999999988864  2233456777788889999996 7777777665555443

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=97.54  E-value=0.00024  Score=54.13  Aligned_cols=71  Identities=13%  Similarity=0.009  Sum_probs=54.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC-CCCcEEEeCCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW-PTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~-~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..++.||..     +.||+|.+++-+|...||+|+.+.++-. ....++.+.+.. .++|.+..||..|.....+...
T Consensus         4 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~y   75 (230)
T 1gwc_A            4 GDDLKLLGA-----WPSPFVTRVKLALALKGLSYEDVEEDLY-KKSELLLKSNPVHKKIPVLIHNGAPVCESMIILQY   75 (230)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcEEEEeC-----CCChHHHHHHHHHHHcCCCCeEEecccc-cCCHHHHhhCCCCCccCEEEECCEEeecHHHHHHH
Confidence            357889987     7899999999999999999999888642 112335555654 6999999999888876655554

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=97.54  E-value=0.00049  Score=49.01  Aligned_cols=60  Identities=20%  Similarity=0.363  Sum_probs=42.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      ..++|+..+    +||++|++....|++    +  ++.+..+|++.++++.    +..+...+|.+++  +|+.+.
T Consensus        56 k~vlv~F~a----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~~  123 (148)
T 3p2a_A           56 LPMVIDFWA----PWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPALS----TRFRIRSIPTIMLYRNGKMID  123 (148)
T ss_dssp             SCEEEEEEC----SSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHHH----HHCCCCccCEEEEEECCeEEE
Confidence            445554433    799999998877754    2  4778888998887653    3446788898866  887654

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.53  E-value=0.00019  Score=45.18  Aligned_cols=50  Identities=10%  Similarity=0.146  Sum_probs=36.5

Q ss_pred             CCCccHHHHHHHHh----cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEee
Q 030914           87 PQCGFSSLAVRVLG----AYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~----~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iG  141 (169)
                      +||++|+.+...|+    +++.++..+.|+ +++    +.+..|..++|.+++||+.+.
T Consensus         9 ~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~~----~~~~~~v~~~Pt~~~~G~~~~   62 (77)
T 1ilo_A            9 TGCANCQMLEKNAREAVKELGIDAEFEKIK-EMD----QILEAGLTALPGLAVDGELKI   62 (77)
T ss_dssp             SSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-SHH----HHHHHTCSSSSCEEETTEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHcCCceEEEEec-CHH----HHHHCCCCcCCEEEECCEEEE
Confidence            48999999877654    456667777776 443    344457889999999998764

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=97.53  E-value=0.00028  Score=54.64  Aligned_cols=69  Identities=12%  Similarity=0.067  Sum_probs=55.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.++..  +....++++.+...++|.+..||..|.....+...
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~Y   73 (244)
T 1ljr_A            3 LELFLD-----LVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIY   73 (244)
T ss_dssp             CEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEec-----CCCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCCCCcCcEEEECCEEEEchHHHHHH
Confidence            678877     6899999999999999999999888642  23345677777788999999999888886655553

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=97.53  E-value=0.00036  Score=54.23  Aligned_cols=71  Identities=14%  Similarity=0.034  Sum_probs=55.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..|.+|..     +.||+|+++.-+|...||+|+.+.++..  +....++.+.+...++|.+..||..|.....+...
T Consensus         8 ~~~~ly~~-----~~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~gkVPvL~d~g~~l~ES~aI~~Y   80 (247)
T 2c3n_A            8 MGLELYLD-----LLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLY   80 (247)
T ss_dssp             -CEEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             cceEEeec-----CCChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCcCcEEEECCEEEEcHHHHHHH
Confidence            46889988     6799999999999999999999888642  22334566778888999999999888776655543

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=97.53  E-value=0.00024  Score=55.16  Aligned_cols=71  Identities=17%  Similarity=0.142  Sum_probs=56.2

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCe---EeeccHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGE---FIGGSDIILN  148 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~---~iGG~d~l~~  148 (169)
                      +..+.||..     +.||+|.+++-+|...|++|+.+.|+... ..+++.+.+...++|.+.. ||.   .|.....+..
T Consensus        24 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~   97 (246)
T 3rbt_A           24 TDKLRLYHV-----DMNPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICD   97 (246)
T ss_dssp             CSSEEEEEC-----TTCHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHCTTCBSCEEEECCTTSCEEECCHHHHHH
T ss_pred             CCceEEEec-----CCCccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhCCCCCCCEEEecCCCCceeeeCHHHHHH
Confidence            346889988     68999999999999999999999886532 2334677788889999999 887   7777655544


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        98 y   98 (246)
T 3rbt_A           98 Y   98 (246)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=97.52  E-value=0.00028  Score=54.02  Aligned_cols=71  Identities=15%  Similarity=0.103  Sum_probs=56.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCC-----------eEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKG-----------EFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g-----------~~i  140 (169)
                      .++.||..     +.||+|.+++-+|...||+|+.+.|+.  .+....++.+.+...++|.+.++|           ..|
T Consensus         8 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~l   82 (235)
T 3n5o_A            8 PNFELYGY-----FRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFSI   82 (235)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEEE
T ss_pred             CCeEEEec-----CCCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCCCCCCCEEEeCCCccccccccCceee
Confidence            46889987     689999999999999999999988863  333445677888889999999988           777


Q ss_pred             eccHHHHHH
Q 030914          141 GGSDIILNM  149 (169)
Q Consensus       141 GG~d~l~~~  149 (169)
                      .....+...
T Consensus        83 ~eS~aI~~y   91 (235)
T 3n5o_A           83 GQSLAALEY   91 (235)
T ss_dssp             CSHHHHHHH
T ss_pred             hhHHHHHHH
Confidence            765555443

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.52  E-value=0.00066  Score=46.73  Aligned_cols=55  Identities=13%  Similarity=0.186  Sum_probs=39.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ...++|+..+    +||++|+.....|.+     .++.+..+|++.++++    .+..+...+|.+++
T Consensus        23 ~~~vlv~f~a----~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~~----~~~~~i~~~Pt~~~   82 (118)
T 2f51_A           23 PGLVLVDFFA----TWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNA----ADAYGVSSIPALFF   82 (118)
T ss_dssp             SSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTTCCSSSEEEE
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHHH----HHhcCCCCCCEEEE
Confidence            3445554443    799999998887765     4788899999888664    34446788999865

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.52  E-value=0.00051  Score=45.40  Aligned_cols=59  Identities=25%  Similarity=0.439  Sum_probs=40.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      .+++++..+    +|||+|+.....|++    +  ++.+..+|++.++++.    +..+...+|.+++  +|+.+
T Consensus        19 ~~~~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~   85 (105)
T 1fb6_A           19 VPVMVDFWA----PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIA----TQYNIRSIPTVLFFKNGERK   85 (105)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEE
T ss_pred             CcEEEEEEC----CCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHHH----HhCCCCcccEEEEEeCCeEE
Confidence            345444433    799999998887754    3  3677788888776543    3446778999877  88754

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=97.52  E-value=0.00025  Score=53.60  Aligned_cols=69  Identities=13%  Similarity=0.079  Sum_probs=54.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...||+|+.+.++.  .+....++.+.+...++|.+.. ||..|.....+...
T Consensus         1 m~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   72 (219)
T 3f6d_A            1 MDFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIY   72 (219)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CEEEeC-----CCCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHH
Confidence            357776     689999999999999999999988864  3334456777888889999999 88888876655443

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=97.52  E-value=2.9e-05  Score=53.87  Aligned_cols=73  Identities=11%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             ccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhc----C-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           61 LSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y-NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        61 ~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      .+.++.+...... .+++|+..+    +||++|++....|++    + ++.+..+|++.++++.+.+    +...+|.++
T Consensus        23 ~~~~~~l~~~~~~~~~~vv~f~~----~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~----~v~~~Pt~~   94 (130)
T 1wmj_A           23 DEFDAQMTKAKEAGKVVIIDFTA----SWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKY----NVEAMPTFL   94 (130)
T ss_dssp             HHHHHHHHHHHTTTCBCBEECCS----SSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHHHH----TCCSSCCCC
T ss_pred             HHHHHHHHHHhhcCCEEEEEEEC----CCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHHHc----CCCccceEE
Confidence            4556666665433 344444433    799999987776654    2 6788888888777654433    567888887


Q ss_pred             e--CCeEee
Q 030914          135 I--KGEFIG  141 (169)
Q Consensus       135 i--~g~~iG  141 (169)
                      +  +|+.+.
T Consensus        95 ~~~~g~~~~  103 (130)
T 1wmj_A           95 FIKDGAEAD  103 (130)
T ss_dssp             BCTTTTCCB
T ss_pred             EEeCCeEEE
Confidence            7  787654

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=97.51  E-value=0.00017  Score=48.82  Aligned_cols=50  Identities=16%  Similarity=0.318  Sum_probs=36.3

Q ss_pred             CCCccHHHHHHHHhc---------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGA---------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~---------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +||++|++....|.+         .++.+..+|+..++++.+.    .+...+|.+++  +|+.+
T Consensus        34 ~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~Pt~~~~~~g~~~   94 (120)
T 1mek_A           34 PWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ----YGVRGYPTIKFFRNGDTA   94 (120)
T ss_dssp             SSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHH----HTCCSSSEEEEEESSCSS
T ss_pred             CCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHH----CCCCcccEEEEEeCCCcC
Confidence            799999988776643         2477888898877654333    36788999977  77644

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=97.51  E-value=0.0018  Score=44.17  Aligned_cols=63  Identities=11%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             HHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           65 EVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        65 ~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +..+.+...+ .++|+..+    +||++|++....|++.      ++.+..+|++.++++.    +..+...+|.+++
T Consensus        12 ~f~~~~~~~~~~~lv~f~a----~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~v~~~Pt~~~   81 (122)
T 3aps_A           12 TFNEKVLQGKTHWVVDFYA----PWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQTC----QKAGIKAYPSVKL   81 (122)
T ss_dssp             HHHHHTTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHhcCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHHH----HHcCCCccceEEE
Confidence            3334444444 34444333    7999999998877542      5888889998877643    3456788999865

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.50  E-value=0.00033  Score=51.39  Aligned_cols=23  Identities=9%  Similarity=0.102  Sum_probs=18.7

Q ss_pred             cCCCCCcEEEeCCeEeeccHHHH
Q 030914          125 SHWPTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~iGG~d~l~  147 (169)
                      .|-..+|.++|||+.+-|.....
T Consensus       140 ~gv~gtPt~~i~g~~~~G~~~~~  162 (175)
T 3gyk_A          140 LGFNGTPSFVVEDALVPGFVEQS  162 (175)
T ss_dssp             HTCCSSSEEEETTEEECSCCCHH
T ss_pred             cCCccCCEEEECCEEeeCCCCHH
Confidence            47889999999999998865443

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=97.49  E-value=0.00015  Score=55.90  Aligned_cols=71  Identities=18%  Similarity=0.128  Sum_probs=55.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      ...+.||..     +.||+|.+++-+|...|++|+.+.|+... ..+++.+.+...++|.+.. ||..|.....+...
T Consensus        21 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   92 (239)
T 3q18_A           21 EGLIRIYSM-----RFCPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKHPFGHIPVLETSQSQLIYESVIACEY   92 (239)
T ss_dssp             TTCEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTSTTCCSCEEECTTCCEECSHHHHHHH
T ss_pred             CCeEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcCCCCCCCEEEeCCCceeecHHHHHHH
Confidence            356899988     68999999999999999999998886432 1223566677889999999 88888776655544

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=97.49  E-value=0.00029  Score=53.70  Aligned_cols=72  Identities=18%  Similarity=0.109  Sum_probs=55.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNMHQ  151 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~~~  151 (169)
                      .+.||..     +.||+|.+++-+|...||+|+.+.|+..  +....++++.+...++|.+.+ ||..|.....+.....
T Consensus         3 ~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   77 (225)
T 3m8n_A            3 LYKLYSM-----QRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLA   77 (225)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCTTCCSSEEECSTTCEEECHHHHHHHHH
T ss_pred             ceEEecC-----CCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHH
Confidence            4778887     6899999999999999999999888632  223445677788889999997 6778877666555443

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=97.49  E-value=0.00028  Score=53.65  Aligned_cols=71  Identities=17%  Similarity=0.158  Sum_probs=55.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCC--CeEEEEcCC--CHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNV--PISARNILE--DPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILN  148 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v--~~~~~di~~--~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~  148 (169)
                      .++.||..     +.||+|.+++-+|...|+  +|+.+.|+.  .+....++++.+...++|.+. .||..|.....+..
T Consensus        17 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~   91 (233)
T 3ibh_A           17 QKMIIYDT-----PAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITE   91 (233)
T ss_dssp             --CEEEEC-----TTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEECTTCCEEESHHHHHH
T ss_pred             cceEEecC-----CCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEEecCCeEEecHHHHHH
Confidence            46889987     789999999999999999  999888863  233445677788889999999 68887877655544


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        92 y   92 (233)
T 3ibh_A           92 Y   92 (233)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=97.49  E-value=0.00046  Score=52.22  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+.||..     +.||+|.+++-+|...|++|+.+.++..  +....++.+.+...++|.+..||..|.....+...
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   73 (218)
T 1r5a_A            2 TTVLYYL-----PASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSY   73 (218)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             eEEEEeC-----CCChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCCCCCcCEEEECCEEEEcHHHHHHH
Confidence            4678887     6899999999999999999999888642  23335677777788999999999888876555543

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=97.48  E-value=0.00024  Score=54.85  Aligned_cols=70  Identities=13%  Similarity=0.146  Sum_probs=56.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC-CCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW-PTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~-~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.|+.. ....++.+.+.. .++|.+..||..|.....+...
T Consensus        11 ~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vPvL~~~g~~l~eS~aI~~Y   81 (231)
T 4dej_A           11 SVMTLYSG-----KDDLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEY   81 (231)
T ss_dssp             SSCEEEEC-----SSCHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHCCSSSCCSEEEETTEEEESHHHHHHH
T ss_pred             ceEEEEcC-----CCChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            34788987     6899999999999999999999988754 223456677777 8999999999988876665554

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=97.48  E-value=0.00019  Score=57.77  Aligned_cols=70  Identities=17%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..++||..     +.||+|.+++-+|...|++|+.+.++... ...++.+++ +..++|.+..||..+.....+...
T Consensus         2 ~~~~Ly~~-----~~sp~~~kvr~~L~~~gi~ye~~~v~~~~-~~~~~~~~n~P~g~vPvL~~~g~~l~eS~aI~~y   72 (310)
T 3ic8_A            2 SELILHHY-----PTSLFAEKARLMLGFKGVNWRSVTIPSIM-PKPDLTALTGGYRKTPVLQIGADIYCDTALMARR   72 (310)
T ss_dssp             CCEEEEEC-----TTCGGGHHHHHHHHHHTCEEEEEECCSSS-CCHHHHHHHSSCCCSCEEEETTEEECSHHHHHHH
T ss_pred             CeEEEEec-----CCCcHHHHHHHHHHhcCCCcEEEEcCCCC-CcHHHHHhcCCCCceeEEEECCEEEcCHHHHHHH
Confidence            35789988     78999999999999999999999886421 234556677 789999999999988776555443

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=97.48  E-value=0.00017  Score=57.54  Aligned_cols=70  Identities=17%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC--C--eEeeccHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK--G--EFIGGSDIILN  148 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~--g--~~iGG~d~l~~  148 (169)
                      ...++||+.     +.||+|.+++-+|...||+|+.++|+...  +.++ +.++..++|.+.++  |  ..+.....+..
T Consensus        12 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~   83 (290)
T 1z9h_A           12 RLQLTLYQY-----KTCPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFSSYRKVPILVAQEGESSQQLNDSSVIIS   83 (290)
T ss_dssp             -CEEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTCSCCSSCEEEEEETTEEEEECSHHHHHH
T ss_pred             CCCEEEEeC-----CCChHHHHHHHHHHHcCCCeEEEECChhh--HHHH-HHcCCCCCCEEEECCCCCeEEecCHHHHHH
Confidence            346889987     78999999999999999999999996321  1123 46788999999985  3  56777665555


Q ss_pred             HH
Q 030914          149 MH  150 (169)
Q Consensus       149 ~~  150 (169)
                      ..
T Consensus        84 yL   85 (290)
T 1z9h_A           84 AL   85 (290)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.47  E-value=0.0012  Score=46.52  Aligned_cols=71  Identities=13%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             HHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEcCCCH-----HHHHHHHHhcCCCCCcEEEe-
Q 030914           66 VVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNILEDP-----ELKSAVKAFSHWPTFPQIFI-  135 (169)
Q Consensus        66 ~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di~~~~-----~~~~~l~~~~g~~t~P~vfi-  135 (169)
                      .+++.+.. +|+|+..+    +||++|++....|+    ++++.+..+|+..+.     +....+.+..|-..+|.+++ 
T Consensus        25 ~~~~~~~~-~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~   99 (135)
T 3emx_A           25 EFRQLLQG-DAILAVYS----KTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFY   99 (135)
T ss_dssp             HHHHHHTS-SEEEEEEE----TTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEE
T ss_pred             HHHHHhCC-cEEEEEEC----CcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEE
Confidence            34444555 76666554    79999999887664    446778888885431     22234445557888998755 


Q ss_pred             -CCeEee
Q 030914          136 -KGEFIG  141 (169)
Q Consensus       136 -~g~~iG  141 (169)
                       +|+.++
T Consensus       100 ~~G~~v~  106 (135)
T 3emx_A          100 KEGRIVD  106 (135)
T ss_dssp             ETTEEEE
T ss_pred             cCCEEEE
Confidence             776544

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.45  E-value=0.00033  Score=48.40  Aligned_cols=61  Identities=18%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             HHhhcCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           69 QDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        69 ~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      ++++.+-++.|..     +||++|++....|.+       .++.+..+|++.++++.    +..+-..+|.+++  +|+
T Consensus        19 ~~~~~~vlv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~G~   88 (126)
T 1x5e_A           19 ELLEGDWMIEFYA-----PWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGLS----GRFIINALPTIYHCKDGE   88 (126)
T ss_dssp             HHTSSEEEEEEEC-----SSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTE
T ss_pred             HHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHHH----HHcCCcccCEEEEEeCCe
Confidence            3444444445555     799999998887754       26888889998877643    3446788999876  787

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=97.45  E-value=0.0003  Score=52.89  Aligned_cols=68  Identities=15%  Similarity=0.159  Sum_probs=54.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+.... ..++++.+...++|.+. .||..+.....+...
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   71 (213)
T 3m0f_A            3 LKLIGM-----LDSPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDY   71 (213)
T ss_dssp             CEEESC-----TTSHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHCTTCCSSEEECTTCCEEESHHHHHHH
T ss_pred             EEEecC-----CCCCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcCCCCCcCeEEeCCCcEEEcHHHHHHH
Confidence            568876     689999999999999999999998864332 45677888888999998 688888776555443

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.45  E-value=0.00038  Score=58.88  Aligned_cols=75  Identities=17%  Similarity=0.207  Sum_probs=58.2

Q ss_pred             HhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC---eEeeccHHH
Q 030914           70 DVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKG---EFIGGSDII  146 (169)
Q Consensus        70 ~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g---~~iGG~d~l  146 (169)
                      -..+..+.||..     +.||+|.+++-+|...|++|+.+.|+......+++.+.+...++|.+..+|   ..+.....+
T Consensus        21 ~m~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI   95 (471)
T 4ags_A           21 HMAARALKLYVS-----ATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLI   95 (471)
T ss_dssp             ----CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCTTCCSCEEEECSSSCEEEESHHHH
T ss_pred             ccCCCceEEECC-----CCCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCCCCccCeEEECCcCeEEEecHHHH
Confidence            344567999987     689999999999999999999999876544455677788889999999987   777766555


Q ss_pred             HHH
Q 030914          147 LNM  149 (169)
Q Consensus       147 ~~~  149 (169)
                      ...
T Consensus        96 ~~y   98 (471)
T 4ags_A           96 AQY   98 (471)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=97.43  E-value=0.00055  Score=53.46  Aligned_cols=70  Identities=11%  Similarity=-0.016  Sum_probs=55.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEe---CCeEeeccHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFI---KGEFIGGSDIILN  148 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi---~g~~iGG~d~l~~  148 (169)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.|+..  +....++.+.+...++|.+..   ||..|.....+..
T Consensus        18 ~~~~Ly~~-----~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~~   92 (260)
T 1k0d_A           18 EGYTLFSH-----RSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILL   92 (260)
T ss_dssp             SSEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHH
T ss_pred             CcEEEEcC-----CCCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCCCCCcCEEEecCCCCeEEECHHHHHH
Confidence            46889987     6899999999999999999999877642  334456777777889999998   7887877655544

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=97.41  E-value=0.00041  Score=51.78  Aligned_cols=68  Identities=22%  Similarity=0.116  Sum_probs=54.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++...  ..++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   69 (202)
T 2gsq_A            2 KYTLHYF-----PLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARH   69 (202)
T ss_dssp             CEEEEEC-----SSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHH
T ss_pred             CcEEEEc-----CCCchhHHHHHHHHHcCCCeeEEEeCHHH--HHhhcccCCCCCCCEEEECCEEEecHHHHHHH
Confidence            4678877     67999999999999999999999887532  34566777778999999999888876655554

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=97.41  E-value=0.0005  Score=52.58  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=56.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.++.  +-..++++.+...++|.+..||..|.....+...
T Consensus        26 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~Y   94 (225)
T 2hnl_A           26 EKYTLTYF-----NGRGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRTPFGHVPMLNVSGNVLGESHAIELL   94 (225)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHH
T ss_pred             CCeEEEEc-----CCCCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            46889987     679999999999999999999998863  2345677777788999999999888876655554

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=97.41  E-value=0.00044  Score=52.51  Aligned_cols=69  Identities=19%  Similarity=0.194  Sum_probs=55.9

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC--CCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL--EDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~--~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     |.||+|++++-+|.+.|++|+.+.|+  .++....++.+.+...++|.+..||..|.....+...
T Consensus         3 mkLY~~-----~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~Y   73 (216)
T 3vk9_A            3 IDLYYV-----PGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITY   73 (216)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEECCHHHHHHH
T ss_pred             EEEEeC-----CCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEecCCceeechHHHHHH
Confidence            678987     78999999999999999999987775  3444556777888888999999999988776655554

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=97.41  E-value=0.00043  Score=53.03  Aligned_cols=72  Identities=14%  Similarity=0.080  Sum_probs=56.7

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHHHh
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNMHQ  151 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~~~  151 (169)
                      .+.||..     +.||+|.+++-+|...|++|+.+.|+.  .+....++.+.+...++|.+. .||..|.....+.....
T Consensus        22 m~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~   96 (230)
T 4hz2_A           22 SMRIYGM-----NGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNAIGKVPVVVLDDGTALRESNAILLHFA   96 (230)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             hheeeCC-----CCCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHh
Confidence            3778887     689999999999999999999988864  223445677788888999999 78888877666555433

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.40  E-value=0.0017  Score=46.89  Aligned_cols=76  Identities=14%  Similarity=0.288  Sum_probs=48.4

Q ss_pred             cHHHHHHHHh-hcCCeEEEee-cCCCCCCCccHHHHHHHH---h----c--CCCCeEEEEcCCCH-------HHHHHHHH
Q 030914           62 SLKEVVEQDV-KENPVMLYMK-GVPEFPQCGFSSLAVRVL---G----A--YNVPISARNILEDP-------ELKSAVKA  123 (169)
Q Consensus        62 ~~~~~i~~~~-~~~~Vvly~k-~~~~~~~C~~c~~a~~~L---~----~--~~v~~~~~di~~~~-------~~~~~l~~  123 (169)
                      +..+.+.... +..+|+|+.. .    +||++|++....|   .    .  .++.+..+|++.++       .....+.+
T Consensus        35 ~~~~~~~~a~~~gk~vlv~F~ga----~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~  110 (154)
T 2ju5_A           35 SYAEALEHSKQDHKPIGLFFTGS----DWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKA  110 (154)
T ss_dssp             CHHHHHHHHHHHCCCEEEEEECT----TTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCeEEEEEeCC----CCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHH
Confidence            3455555443 3456666554 3    6999999888665   1    1  23556677776653       33345666


Q ss_pred             hcCCCCCcEEEe---CCeEee
Q 030914          124 FSHWPTFPQIFI---KGEFIG  141 (169)
Q Consensus       124 ~~g~~t~P~vfi---~g~~iG  141 (169)
                      ..+...+|.+++   +|+.+.
T Consensus       111 ~~~v~~~Pt~~~~d~~G~~~~  131 (154)
T 2ju5_A          111 QYKVTGFPELVFIDAEGKQLA  131 (154)
T ss_dssp             HTTCCSSSEEEEECTTCCEEE
T ss_pred             HcCCCCCCEEEEEcCCCCEEE
Confidence            667888999866   787665

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=97.40  E-value=0.00021  Score=55.25  Aligned_cols=68  Identities=15%  Similarity=0.103  Sum_probs=54.5

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+.||..     +.||+|.+++-+|...||+|+.+.|..+  ...++.+.+...++|.+..+|..+.....+...
T Consensus         3 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~nP~g~vPvL~~~~~~l~eS~aI~~Y   70 (242)
T 3ubk_A            3 MIKLHGA-----SISNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKISPMGKIPVLEMDGKFIFESGAILEF   70 (242)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTSTTCCSCEEEETTEEECCHHHHHHH
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcCCCCCcCeEEECCceEecHHHHHHH
Confidence            4678877     6899999999999999999999998543  234567778888999999999878766555443

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.40  E-value=0.00031  Score=53.68  Aligned_cols=52  Identities=15%  Similarity=0.307  Sum_probs=41.0

Q ss_pred             EEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe
Q 030914           78 LYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE  138 (169)
Q Consensus        78 ly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~  138 (169)
                      .|..     +||++|+++...|++.     ++.+..+|++.++++.    +..|..++|.++++|+
T Consensus       142 ~F~a-----~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~G~  198 (229)
T 2ywm_A          142 VFVT-----TSCGYCPSAAVMAWDFALANDYITSKVIDASENQDLA----EQFQVVGVPKIVINKG  198 (229)
T ss_dssp             EEEC-----TTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHHHH----HHTTCCSSSEEEEGGG
T ss_pred             EEEC-----CCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHHHH----HHcCCcccCEEEECCE
Confidence            4776     7999999998887654     5778888998776643    3457789999999987

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=97.39  E-value=0.0002  Score=49.88  Aligned_cols=51  Identities=8%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +||++|++....|++.      ++.+..+|++.++++    .+..+...+|.+++  +|+.+.
T Consensus        52 ~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~~  110 (128)
T 3ul3_B           52 KWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNESL----ARKFSVKSLPTIILLKNKTMLA  110 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHcCCCCcCEEEEEECCEEEE
Confidence            7999999988877543      366777888877654    34457789999877  888665

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=97.39  E-value=0.00063  Score=48.19  Aligned_cols=69  Identities=16%  Similarity=0.218  Sum_probs=46.0

Q ss_pred             HHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--
Q 030914           65 EVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        65 ~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      ..-+.++..+ .++|+..+    +||++|++....|.+.      .+.+..+|++.++++.+.    .+...+|.+++  
T Consensus        15 ~f~~~~~~~~~~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~----~~v~~~Pt~~~~~   86 (140)
T 3hz4_A           15 TWSQQVEDSKKPVVVMFYS----PACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAEK----YGVQGTPTFKFFC   86 (140)
T ss_dssp             HHHHHTTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHH----HTCCEESEEEEEE
T ss_pred             hHHHHHHhCCCcEEEEEEC----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHHH----CCCCcCCEEEEEe
Confidence            3333444433 34444333    7999999988777543      277888999888765443    36788999977  


Q ss_pred             CCeEee
Q 030914          136 KGEFIG  141 (169)
Q Consensus       136 ~g~~iG  141 (169)
                      +|+.+.
T Consensus        87 ~G~~~~   92 (140)
T 3hz4_A           87 HGRPVW   92 (140)
T ss_dssp             TTEEEE
T ss_pred             CCcEEE
Confidence            887654

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=97.38  E-value=0.00087  Score=51.26  Aligned_cols=70  Identities=17%  Similarity=0.107  Sum_probs=54.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh--cCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF--SHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~--~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||.-     +.||+|.+++-+|...||+|+.+.++..+. ..++++.  +...++|.+..||..+.....+...
T Consensus         3 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y   74 (229)
T 1vf1_A            3 AKPVLYYF-----NGRGKMESIRWLLAAAGVEFEEVFLETREQ-YEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNY   74 (229)
T ss_dssp             CCCEEEEC-----SSCTTTHHHHHHHHHTTCCCEEEECCSHHH-HHHHHHHTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCeEEEEe-----CCCchhHHHHHHHHHcCCCCeeEecCcHHH-HHHHHHhcCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            35778876     579999999999999999999999874333 3446666  6778999999999888876655554

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=97.37  E-value=0.00044  Score=51.84  Aligned_cols=69  Identities=17%  Similarity=0.125  Sum_probs=54.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+.  .+....++.+.+...++|.+..||..+.....+...
T Consensus         2 ~~Ly~~-----~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   72 (209)
T 3ein_A            2 VDFYYL-----PGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDNGFALWESRAIQVY   72 (209)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEecC-----CCCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            357776     689999999999999999999888764  233455677778888999999999988876655543

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.37  E-value=0.00022  Score=54.70  Aligned_cols=63  Identities=21%  Similarity=0.338  Sum_probs=41.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC---CCCeEEEEcCC---CH----------------------------------
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY---NVPISARNILE---DP----------------------------------  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~---~v~~~~~di~~---~~----------------------------------  115 (169)
                      |++|+.     ++||+|++....|+++   +|.+..+.+.-   ++                                  
T Consensus        90 vv~F~d-----~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~~  164 (211)
T 1t3b_A           90 VTVFMD-----ITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKTP  164 (211)
T ss_dssp             EEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCCS
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHHH
Confidence            666777     8999999987766543   66666554421   11                                  


Q ss_pred             -HH--HHHHHHhcCCCCCcEEEe-CCeEeecc
Q 030914          116 -EL--KSAVKAFSHWPTFPQIFI-KGEFIGGS  143 (169)
Q Consensus       116 -~~--~~~l~~~~g~~t~P~vfi-~g~~iGG~  143 (169)
                       .+  ...+.+..|-..+|.+|+ ||+.+.|+
T Consensus       165 ~~v~~~~~l~~~~gV~gTPt~vi~nG~~~~G~  196 (211)
T 1t3b_A          165 NIVKKHYELGIQFGVRGTPSIVTSTGELIGGY  196 (211)
T ss_dssp             SHHHHHHHHHHHHTCCSSCEEECTTSCCCCSC
T ss_pred             HHHHHHHHHHHHcCCCcCCEEEEeCCEEecCC
Confidence             01  112334458899999999 99988775

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.37  E-value=0.00057  Score=47.40  Aligned_cols=52  Identities=10%  Similarity=0.062  Sum_probs=35.6

Q ss_pred             CCccHHHHHHHHhc----C--CCCeEEEEc-------CCCHHHHHHHHHhcCCCCCcEEEe--CCeEeecc
Q 030914           88 QCGFSSLAVRVLGA----Y--NVPISARNI-------LEDPELKSAVKAFSHWPTFPQIFI--KGEFIGGS  143 (169)
Q Consensus        88 ~C~~c~~a~~~L~~----~--~v~~~~~di-------~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG~  143 (169)
                      |||.|+.....|++    +  ++.+..+|+       +.++.+.+.    .+...+|.+++  ++..+.|.
T Consensus        42 wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~----~~i~~~Pt~~~~~~~~~~~g~  108 (123)
T 1wou_A           42 WCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKN----LKVTAVPTLLKYGTPQKLVES  108 (123)
T ss_dssp             SCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHH----HCCCSSSEEEETTSSCEEEGG
T ss_pred             cCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHH----CCCCeeCEEEEEcCCceEecc
Confidence            99999999887765    2  567788888       455554333    46788999866  33444443

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=97.37  E-value=0.00013  Score=56.06  Aligned_cols=70  Identities=11%  Similarity=0.172  Sum_probs=52.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~~  150 (169)
                      ..-||..     +.||||++|+-+|.+.||+|+.+.|+-... .+++.+++...++|.+.. ||..|.....+.+..
T Consensus        22 ~MKLy~~-----~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL   92 (225)
T 4glt_A           22 SMKLLYS-----NTSPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHNPLGKIPVLILPDGESLYDSRVIVEYL   92 (225)
T ss_dssp             CCEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTCTTCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             CceEecC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhCCCCCCCEEEeCCCCEEeehHHHHHHH
Confidence            3468887     789999999999999999999988864211 124666777789999987 678887766555543

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=97.37  E-value=0.0012  Score=46.40  Aligned_cols=54  Identities=22%  Similarity=0.413  Sum_probs=38.1

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+++|+..+    +||++|++....|.+    +  .+.+..+|++.++++    .+..|-..+|.+++
T Consensus        52 k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~  111 (141)
T 3hxs_A           52 KPAIVDFYA----DWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPEL----ARDFGIQSIPTIWF  111 (141)
T ss_dssp             SCEEEEEEC----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEE
T ss_pred             CEEEEEEEC----CCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHH----HHHcCCCCcCEEEE
Confidence            455555443    799999998876653    3  367788899888764    34446788999876

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.37  E-value=0.0003  Score=54.00  Aligned_cols=63  Identities=13%  Similarity=0.295  Sum_probs=41.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC---CCCeEEEEcCC---CH----------------------------------
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY---NVPISARNILE---DP----------------------------------  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~---~v~~~~~di~~---~~----------------------------------  115 (169)
                      |++|+.     ++||+|++....|+++   +|.+..+.+..   ++                                  
T Consensus        90 vv~F~d-----~~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~~  164 (216)
T 1eej_A           90 ITVFTD-----ITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCD  164 (216)
T ss_dssp             EEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCCS
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHHH
Confidence            566776     8999999987766543   66666554421   11                                  


Q ss_pred             ---HHHHHHHHhcCCCCCcEEEe-CCeEeecc
Q 030914          116 ---ELKSAVKAFSHWPTFPQIFI-KGEFIGGS  143 (169)
Q Consensus       116 ---~~~~~l~~~~g~~t~P~vfi-~g~~iGG~  143 (169)
                         +....+.+..|-..+|.+|+ ||..+.|+
T Consensus       165 ~~v~~~~~l~~~~gV~gtPt~v~~dG~~~~G~  196 (216)
T 1eej_A          165 VDIADHYALGVQLGVSGTPAVVLSNGTLVPGY  196 (216)
T ss_dssp             CCHHHHHHHHHHHTCCSSSEEECTTSCEEESC
T ss_pred             HHHHHHHHHHHHcCCCccCEEEEcCCeEecCC
Confidence               11123344458889999998 88888876

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=97.33  E-value=0.0007  Score=47.75  Aligned_cols=50  Identities=24%  Similarity=0.400  Sum_probs=37.8

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +||++|+.....|++    +  ++.+..+|++.++++.    +..+...+|.+++  +|+.+
T Consensus        60 ~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~  117 (140)
T 1v98_A           60 PWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLA----ARYGVRSVPTLVLFRRGAPV  117 (140)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHHH----HHTTCCSSSEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHHH----HHCCCCccCEEEEEeCCcEE
Confidence            799999999887754    2  4777888888776643    3446788999877  88864

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.32  E-value=0.00098  Score=46.83  Aligned_cols=73  Identities=16%  Similarity=0.191  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH-------hcC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAY-NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      ....+.+.- ...|+|+..+    +||++|++....+       +.+ ++.+..+|++.+.+....+.+..|...+|.++
T Consensus        22 ~~~~l~~~~-~k~vlv~F~a----~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~   96 (134)
T 2fwh_A           22 LNQALVEAK-GKPVMLDLYA----DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTIL   96 (134)
T ss_dssp             HHHHHHHHT-TSCEEEEEEC----TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred             HHHHHHHhc-CCcEEEEEEC----CCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCEEE
Confidence            344444432 3455554443    7999999976433       222 57777888876545555666667888999986


Q ss_pred             e---CCeEe
Q 030914          135 I---KGEFI  140 (169)
Q Consensus       135 i---~g~~i  140 (169)
                      +   +|+.+
T Consensus        97 ~~d~~G~~v  105 (134)
T 2fwh_A           97 FFDGQGQEH  105 (134)
T ss_dssp             EECTTSCBC
T ss_pred             EECCCCCEe
Confidence            5   67654

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=97.32  E-value=0.00051  Score=52.03  Aligned_cols=69  Identities=12%  Similarity=0.087  Sum_probs=45.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH----HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP----ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~----~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.|+...    ....++.+.+...++|.+..||..|.....+...
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   75 (222)
T 3niv_A            3 LILYDY-----FRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDY   75 (222)
T ss_dssp             -CEEEC-----TTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEEETTEEEECHHHHHHH
T ss_pred             EEEEcC-----CCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEEECCEEeecHHHHHHH
Confidence            567876     67999999999999999999988886432    3455677777788999999999888876655554

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=97.30  E-value=0.0012  Score=50.11  Aligned_cols=70  Identities=17%  Similarity=0.115  Sum_probs=54.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh--cCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF--SHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~--~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||.-     +.||+|.+++-+|...|++|+.+.+...+. ..++++.  +...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~y   73 (221)
T 1k3y_A            2 EKPKLHYF-----NARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (221)
T ss_dssp             CCCEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            35678876     579999999999999999999999874333 3446666  6678999999999888876655554

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=97.30  E-value=0.00015  Score=54.00  Aligned_cols=68  Identities=19%  Similarity=0.117  Sum_probs=51.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.++.. ....++.+.+...++|.+. .||..|.....+...
T Consensus         1 m~Ly~~-----~~sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   69 (202)
T 3r2q_A            1 MKLVGS-----YTSPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEY   69 (202)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTCTTCCSCEEECTTSCEECSHHHHHHH
T ss_pred             CEEEeC-----CCCcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhCCCCCcCeEEecCCcEEecHHHHHHH
Confidence            357776     6899999999999999999999988643 1122345566778999999 688888776555544

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=97.30  E-value=0.0016  Score=47.19  Aligned_cols=68  Identities=15%  Similarity=0.309  Sum_probs=46.3

Q ss_pred             HHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--
Q 030914           65 EVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        65 ~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      +.+++.+.. .+++|+...    +||++|+.....|++.      ++.+..+|++.++++.    +..+-..+|.+++  
T Consensus        55 ~~f~~~~~~~~~vlv~F~a----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~l~----~~~~i~~~Pt~~~~~  126 (155)
T 2ppt_A           55 AILARAERDDLPLLVDFWA----PWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPAVA----GRHRIQGIPAFILFH  126 (155)
T ss_dssp             HHHHHHTTCSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTHHH----HHTTCCSSSEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEEC----CCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHHHH----HHcCCCcCCEEEEEe
Confidence            344444443 345544443    7999999988877532      5888899998887643    3446788999877  


Q ss_pred             CCeEe
Q 030914          136 KGEFI  140 (169)
Q Consensus       136 ~g~~i  140 (169)
                      +|+.+
T Consensus       127 ~G~~~  131 (155)
T 2ppt_A          127 KGREL  131 (155)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            88764

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=97.29  E-value=6.2e-05  Score=56.03  Aligned_cols=50  Identities=12%  Similarity=0.018  Sum_probs=39.8

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      +||+.|+.+..+|++.      .+.|-.+||++.+++    ....+-..+|.+  |-+|+.+
T Consensus        51 ~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~----a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           51 DYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF----NTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTTTTCCSSEEEEEEETTEEE
T ss_pred             CCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHcCCCCCCEEEEEECCEEE
Confidence            7999999988888543      266889999988874    444567899998  7799987

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=97.26  E-value=0.00084  Score=50.33  Aligned_cols=69  Identities=14%  Similarity=0.049  Sum_probs=54.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC-----eEeeccHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKG-----EFIGGSDIILN  148 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g-----~~iGG~d~l~~  148 (169)
                      ..+.||..     +.||+|.+++-+|...||+|+.+.++...  ..++++.+...++|.+..+|     ..|.....+..
T Consensus         4 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~   76 (211)
T 2wb9_A            4 QHFKLWYF-----QFRGRAEPIRLLLTCAGVKFEDYQFTMDQ--WPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIAR   76 (211)
T ss_dssp             CEEEEEEE-----SSCGGGHHHHHHHHHTTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEEECTTSCEEEEESHHHHHH
T ss_pred             CceEEEEe-----CCCCchHHHHHHHHHcCCCceEEEechhh--HHHhCcCCCCCCCCEEEECCCCccceeecCHHHHHH
Confidence            35788887     57999999999999999999999887432  25566777778999999988     77777655544


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        77 y   77 (211)
T 2wb9_A           77 L   77 (211)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=97.25  E-value=0.00083  Score=51.67  Aligned_cols=67  Identities=21%  Similarity=0.158  Sum_probs=52.1

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      ++|..     + ||+|.+++-+|...||+|+.+.|+..  .....++.+.+...++|.+.. ||..|.....+...
T Consensus         5 lLy~~-----~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~y   74 (238)
T 4exj_A            5 ILYTG-----P-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPAGIVPTLVDDKGTPITESNNILLY   74 (238)
T ss_dssp             EEEEC-----S-STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             eEeeC-----C-CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHH
Confidence            38877     6 99999999999999999999887642  444556777888889999988 46777776555443

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.22  E-value=0.00062  Score=47.72  Aligned_cols=48  Identities=19%  Similarity=0.285  Sum_probs=34.7

Q ss_pred             CCCccHHHHHHHHhc-------C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           87 PQCGFSSLAVRVLGA-------Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~-------~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      +||++|++....|.+       .  ++.+..+|++.+.++    .+..+...+|.+++  +|+
T Consensus        44 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~  102 (140)
T 2dj1_A           44 PWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASML----ASKFDVSGYPTIKILKKGQ  102 (140)
T ss_dssp             TTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHH----HHHTTCCSSSEEEEEETTE
T ss_pred             CCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHH----HHHCCCCccCeEEEEECCc
Confidence            799999987766543       2  267777888777554    34456788999877  887

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.20  E-value=0.001  Score=45.96  Aligned_cols=50  Identities=30%  Similarity=0.295  Sum_probs=35.6

Q ss_pred             CCCccHHHHHHHHhc----------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGA----------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +||++|++....|.+          .++.+..+|++.++++.+.    .+-..+|.+++  +|+.+
T Consensus        35 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~----~~v~~~Pt~~~~~~g~~~   96 (133)
T 1x5d_A           35 PWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASR----YGIRGFPTIKIFQKGESP   96 (133)
T ss_dssp             TTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHH----HTCCSSSEEEEEETTEEE
T ss_pred             CCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHh----CCCCeeCeEEEEeCCCce
Confidence            799999977765533          3477888898877665443    36778999866  67644

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=97.20  E-value=0.00044  Score=48.46  Aligned_cols=51  Identities=20%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +||++|++....|++    +  ++.+..+|++.++++    .+..+...+|.+++  +|+.+.
T Consensus        50 ~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~G~~~~  108 (128)
T 2o8v_B           50 EWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAA  108 (128)
T ss_dssp             SSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCTT----SGGGTCCSSSEEEEEETTEEEE
T ss_pred             CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHcCCCccCEEEEEeCCEEEE
Confidence            799999988876654    2  467788888877653    33446788999988  888643

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.18  E-value=0.00092  Score=46.21  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=43.5

Q ss_pred             ccHHHHHHHHh-hcCCeEEEeecCCCCCCCccHHHHHHHH---h----cCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914           61 LSLKEVVEQDV-KENPVMLYMKGVPEFPQCGFSSLAVRVL---G----AYNVPISARNILEDPELKSAVKAFSHWPTFPQ  132 (169)
Q Consensus        61 ~~~~~~i~~~~-~~~~Vvly~k~~~~~~~C~~c~~a~~~L---~----~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~  132 (169)
                      .+..+.+.... +..+++|+..+    +||++|++....+   .    ..+..+..+.|+.+......+.+..|...+|.
T Consensus        14 ~~~~~~~~~~~~~~k~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt   89 (130)
T 2kuc_A           14 LSFPEALKRAEVEDKLLFVDCFT----TWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPT   89 (130)
T ss_dssp             CCHHHHHHHHHHHSSCEEEEECC----TTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEC----CCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCE
Confidence            34556665443 34455555443    7999999887766   1    11222344444333211233455567788999


Q ss_pred             EEe---CCeEee
Q 030914          133 IFI---KGEFIG  141 (169)
Q Consensus       133 vfi---~g~~iG  141 (169)
                      +++   +|+.+.
T Consensus        90 ~~~~d~~G~~~~  101 (130)
T 2kuc_A           90 LLFINSSGEVVY  101 (130)
T ss_dssp             EEEECTTSCEEE
T ss_pred             EEEECCCCcEEE
Confidence            976   676553

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=97.17  E-value=0.0012  Score=46.49  Aligned_cols=49  Identities=20%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe---CCeE
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI---KGEF  139 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi---~g~~  139 (169)
                      +||++|++....|++    +  ++.+..+|++.++++.    +..+...+|.+++   +|+.
T Consensus        48 ~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           48 DWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELA----GAFGIRSIPSILFIPMEGKP  105 (136)
T ss_dssp             TTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTTCCSSCEEEEECSSSCC
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHHH----HHcCCCCCCEEEEECCCCcE
Confidence            799999998887754    2  3778888998876543    3446788998865   6754

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=97.16  E-value=0.0011  Score=48.28  Aligned_cols=63  Identities=11%  Similarity=0.120  Sum_probs=43.0

Q ss_pred             hcCCeEEEeecCCCCCC--CccHHHHHHHHhcC------C-CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           72 KENPVMLYMKGVPEFPQ--CGFSSLAVRVLGAY------N-VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~--C~~c~~a~~~L~~~------~-v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      ...+|+++...    ++  |+.|+.+--+|++.      . +.+-.+|++.+++    +....|-.++|.+  |-||+.|
T Consensus        33 ~~~~vlVdF~a----~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~~~----lA~~ygV~sIPTlilFk~G~~v  104 (140)
T 2qgv_A           33 QAPDGVVLLSS----DPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEA----IGDRFGAFRFPATLVFTGGNYR  104 (140)
T ss_dssp             TCSSEEEEECC----CTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHHHH----HHHHHTCCSSSEEEEEETTEEE
T ss_pred             CCCCEEEEEeC----CcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCCHH----HHHHcCCccCCEEEEEECCEEE
Confidence            44567777664    46  99999888777543      2 5666677765554    5555577888886  6699887


Q ss_pred             ec
Q 030914          141 GG  142 (169)
Q Consensus       141 GG  142 (169)
                      +-
T Consensus       105 ~~  106 (140)
T 2qgv_A          105 GV  106 (140)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=97.15  E-value=0.0008  Score=50.48  Aligned_cols=68  Identities=18%  Similarity=0.139  Sum_probs=52.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|.+++-+|...|++|+.+.++....  .++++.+...++|.+..||..|.....+...
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~--~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   69 (208)
T 1tu7_A            2 SYKLTYF-----SIRGLAEPIRLFLVDQDIKFIDDRIAKDDF--SSIKSQFQFGQLPCLYDGDQQIVQSGAILRH   69 (208)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGGGS--TTTGGGSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CcEEEEc-----CCCcchHHHHHHHHHcCCCceEEEEcHHHH--HHhccCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            4678877     679999999999999999999988864221  2455667778999999999888776655553

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=97.13  E-value=0.0012  Score=51.58  Aligned_cols=70  Identities=11%  Similarity=0.071  Sum_probs=55.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.++.||..     +.||+|.+++-+|...||+|+.+.++.+.  ..++++.+...++|.+..||..|.....+...
T Consensus        47 m~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~e~~~~nP~gkVPvL~~~g~~l~ES~aI~~Y  116 (249)
T 1m0u_A           47 KHSYTLFYF-----NVKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARF  116 (249)
T ss_dssp             CCCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHH
T ss_pred             CCCeEEEEc-----CCcccHHHHHHHHHHcCCCcEEEEeCHHH--HHHHhhcCCCCCCCEEEECCEEEecHHHHHHH
Confidence            456889987     57999999999999999999999887432  34566677778999999999888876655554

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=97.13  E-value=0.0005  Score=52.46  Aligned_cols=68  Identities=12%  Similarity=0.076  Sum_probs=51.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.++.... ...+.+.+...++|.+.+ ||..|.....+...
T Consensus         3 ~~Ly~~-----~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~y   71 (226)
T 3tou_A            3 MKLIGS-----HASPYTRKVRVVLAEKKIDYQFVLEDVWNA-DTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEY   71 (226)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEECCTTST-TCCGGGTCTTCCSCEEECTTSCEECSHHHHHHH
T ss_pred             EEEecC-----CCCchHHHHHHHHHHcCCCcEEEecCccCC-cHHHHHhCCCCCCCEEEeCCCCEeccHHHHHHH
Confidence            567877     689999999999999999999988864221 123556677889999997 77777776555544

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=97.13  E-value=0.0019  Score=48.83  Aligned_cols=70  Identities=17%  Similarity=0.090  Sum_probs=51.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh--cCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF--SHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~--~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +++.||..     +.||+|.+++-+|...|++|+.+.++..++. ..+...  ....++|.+..||..+.....+...
T Consensus         3 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~-~~~~p~~~~p~g~vP~L~~~g~~l~eS~aI~~y   74 (222)
T 3ik7_A            3 ARPKLHYP-----NGRGRMESVRWVLAAAGVEFDEEFLETKEQL-YKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   74 (222)
T ss_dssp             CSCEEEEC-----SSCTTTHHHHHHHHHTTCCCEEEECCSHHHH-HHHHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcEEEEe-----CCCcchHHHHHHHHHcCCCeeEEeeCcHHHH-HHhhhcCCCCCCCCCEEEECCEEeehHHHHHHH
Confidence            36788887     6799999999999999999999999753332 122221  1147899999999988876655543

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=96.21  E-value=6.8e-05  Score=49.61  Aligned_cols=51  Identities=20%  Similarity=0.446  Sum_probs=34.7

Q ss_pred             CCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +|||+|+.....|++.      ++.+..+|++.++++.    +..|...+|.+++  +|+.+.
T Consensus        29 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~~   87 (106)
T 2yj7_A           29 PWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPNTA----AQYGIRSIPTLLLFKNGQVVD   87 (106)
Confidence            7999999998877654      2455566666555443    3335677899877  777553

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=97.12  E-value=0.00088  Score=50.89  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=53.9

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHh--cCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAF--SHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~--~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||..     +.||+|.+++-+|...|++|+.+.++..+. ..++++.  +...++|.+..||..|.....+...
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y   73 (221)
T 1b48_A            2 AKPKLYYF-----NGRGRMESIRWLLAAAGVEFEEEFLETREQ-YEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (221)
T ss_dssp             CCCEEEBC-----SSCTTTHHHHHHHHHHTCCCCCCBCCCHHH-HHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CceEEEEe-----CCCcchHHHHHHHHHcCCCceEEEeCchHh-HHHHHhcCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            35778876     579999999999999999999888864333 3445555  6677999999999888876655553

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.05  E-value=0.0009  Score=47.07  Aligned_cols=50  Identities=4%  Similarity=0.056  Sum_probs=34.8

Q ss_pred             CCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHHHHHHHHhcCCC------CCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGA-------YNVPISARNILEDPELKSAVKAFSHWP------TFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~~~~l~~~~g~~------t~P~vfi--~g~~i  140 (169)
                      +||++|+++...|++       .++.+..+|++.++++.+.    .+..      .+|.+++  +|+.+
T Consensus        36 ~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~----~~v~~~~~~~~~Pt~~~~~~G~~~  100 (137)
T 2dj0_A           36 NWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTR----YKVSTSPLTKQLPTLILFQGGKEA  100 (137)
T ss_dssp             TTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHH----TTCCCCSSSSCSSEEEEESSSSEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHH----ccCcccCCcCCCCEEEEEECCEEE
Confidence            799999987776643       2577777888877765433    3444      8898855  77654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=97.04  E-value=0.0032  Score=44.96  Aligned_cols=60  Identities=15%  Similarity=0.047  Sum_probs=41.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      .+|+|+...    +||+.|+.....|++.      ++.+..+|++.++++    .+..+...+|.+  |.+|+.+.
T Consensus        24 k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~~----~~~~~i~~~Pt~~~~~~G~~v~   91 (142)
T 1qgv_A           24 RVVVIRFGH----DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDF----NKMYELYDPCTVMFFFRNKHIM   91 (142)
T ss_dssp             SEEEEEEEC----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTSSCSCSSCEEEEEETTEEEE
T ss_pred             CEEEEEEEC----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHHH----HHHcCCCCCCEEEEEECCcEEE
Confidence            445554443    7999999988776542      367778898877653    344567889988  44887663

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.03  E-value=0.0011  Score=56.11  Aligned_cols=71  Identities=18%  Similarity=0.210  Sum_probs=54.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      +.+++||..     +.||+|.+++-+|+..||+|+.+.++.. ...+.+.+.+...++|.+.+ ||..|.....+...
T Consensus       250 ~~~~~L~~~-----~~sp~~~rv~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y  321 (471)
T 4ags_A          250 NGGHVLYSN-----LFCPFVDRARLASELRKFQMHIVEVPLH-PQPEWYKYINPRDTVPALFTPSGEAVHESQLIVQY  321 (471)
T ss_dssp             TTSCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCCS-SCCTTHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CCcEEEEec-----CCCchHHHHHHHHHHCCCCcEEEEecCC-cCcHHHHHhCCCCCcCeEEeCCCcEeecHHHHHHH
Confidence            356889987     6899999999999999999999988643 12233556677789999997 78777766555544

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=97.03  E-value=0.0039  Score=47.24  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=50.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC-------HHHHHHHHHh-cCCCCCcEEEeCCeEeeccHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED-------PELKSAVKAF-SHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~-------~~~~~~l~~~-~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      .++.||.-     +.||+|.+++-+|...||+|+.+.|+-.       ++....+... +...++|.+..||..|.....
T Consensus         4 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~a   78 (224)
T 3gtu_B            4 SSMVLGYW-----DIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSNA   78 (224)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEEESHHH
T ss_pred             CCcEEEEe-----CCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEeecHHH
Confidence            45778876     5799999999999999999999888632       2222222112 345689999888887777655


Q ss_pred             HHHH
Q 030914          146 ILNM  149 (169)
Q Consensus       146 l~~~  149 (169)
                      +...
T Consensus        79 I~~y   82 (224)
T 3gtu_B           79 ILRY   82 (224)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=96.99  E-value=0.0019  Score=48.33  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=49.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...||+|+.+.++.. ....++   +...++|.+..+|..|.+...+...
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~---~P~g~vP~L~~~~~~l~eS~aI~~y   67 (214)
T 3cbu_A            3 LKLCGF-----AASNYYNKVKLALLEKNVPFEEVLAWIG-ETDTTA---TPAGKVPYMITESGSLCESEVINEY   67 (214)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCTT-SSCTTT---STTCCSCEEEETTEEECSHHHHHHH
T ss_pred             EEEecC-----CCCcHhHHHHHHHHhCCCCCEEEecCcc-cCCccc---CCCCCCCEEEECCeeeecHHHHHHH
Confidence            578877     6899999999999999999999988631 001112   5567999999999888776655554

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=96.98  E-value=0.0016  Score=50.08  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=53.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEe----CC--eEeeccHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFI----KG--EFIGGSDI  145 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi----~g--~~iGG~d~  145 (169)
                      ..+.||..     + ||+|.+++-+|...||+|+.+.|+..  +....++.+.+...++|.+..    ||  ..|.....
T Consensus        21 ~~~~Ly~~-----~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~a   94 (244)
T 4ikh_A           21 EWIQLYSL-----P-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESGA   94 (244)
T ss_dssp             TSEEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCTTSCSCEEEETTCGGGCCEEEESHHH
T ss_pred             CeeEEEeC-----C-CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCCCCCCCEEEecCCCCCCceeEEcHHH
Confidence            46889987     6 99999999999999999998887632  334556777787889999998    45  56666554


Q ss_pred             HHH
Q 030914          146 ILN  148 (169)
Q Consensus       146 l~~  148 (169)
                      +..
T Consensus        95 I~~   97 (244)
T 4ikh_A           95 ILI   97 (244)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=96.98  E-value=0.0013  Score=51.92  Aligned_cols=77  Identities=12%  Similarity=0.024  Sum_probs=52.8

Q ss_pred             cCCeEEEeecCC----CCCCCccHHHHHHHH----hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           73 ENPVMLYMKGVP----EFPQCGFSSLAVRVL----GAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        73 ~~~Vvly~k~~~----~~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                      +..+.+|.+...    ....||||.++.-+|    +..||+|+.+.|+... ...++.+.+...++|.+..||..|....
T Consensus        20 ~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~d~g~~l~ES~   98 (260)
T 2yv7_A           20 VPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNFEATHPPILIDNGLAILENE   98 (260)
T ss_dssp             CCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CCTTCCSCEEEETTEEECSHH
T ss_pred             CccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhCCCCCCCEEEECCEEEeCHH
Confidence            446899965422    124699999999988    8899999988876421 1234666777889999999998887665


Q ss_pred             HHHHHH
Q 030914          145 IILNMH  150 (169)
Q Consensus       145 ~l~~~~  150 (169)
                      .+....
T Consensus        99 aI~~YL  104 (260)
T 2yv7_A           99 KIERHI  104 (260)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=96.98  E-value=0.0013  Score=49.59  Aligned_cols=66  Identities=11%  Similarity=-0.058  Sum_probs=52.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      .+.||..      .||+|.+++-+|...|++|+.+.++   ....++.+.+...++|.+.. ||..|.....+...
T Consensus         3 ~~~Ly~~------~~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   69 (219)
T 1nhy_A            3 QGTLYAN------FRIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYY   69 (219)
T ss_dssp             TCEEECC------SSHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHH
T ss_pred             ceEEecC------CCCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHCCCCCCCeEEcCCCCEEecHHHHHHH
Confidence            5778873      4999999999999999999999886   22345667777889999998 88888776555443

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=96.93  E-value=0.0025  Score=47.84  Aligned_cols=68  Identities=15%  Similarity=0.069  Sum_probs=52.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeC---C----eEeeccHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIK---G----EFIGGSDII  146 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~---g----~~iGG~d~l  146 (169)
                      +.||..     + ||+|.+++-+|...|++|+.+.|+..  +....++.+.+...++|.+..+   |    ..|.....+
T Consensus         2 ~~Ly~~-----~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI   75 (215)
T 3gx0_A            2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAI   75 (215)
T ss_dssp             EEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHH
T ss_pred             eEEEeC-----C-CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHH
Confidence            467865     5 99999999999999999999887643  3345567778878899999998   4    677776555


Q ss_pred             HHH
Q 030914          147 LNM  149 (169)
Q Consensus       147 ~~~  149 (169)
                      ...
T Consensus        76 ~~y   78 (215)
T 3gx0_A           76 LLY   78 (215)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=96.93  E-value=0.003  Score=50.51  Aligned_cols=74  Identities=14%  Similarity=-0.028  Sum_probs=54.5

Q ss_pred             CCeEEEeecC-CC---CCCCccHHHHHHHH----hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeecc
Q 030914           74 NPVMLYMKGV-PE---FPQCGFSSLAVRVL----GAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGGS  143 (169)
Q Consensus        74 ~~Vvly~k~~-~~---~~~C~~c~~a~~~L----~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG~  143 (169)
                      ..+.+|.+.. .+   .-.||||.++.-+|    +..||+|+.+.|+....  . +++.+...++|.+..  +|..|.-.
T Consensus        18 ~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~--p-fl~~nP~GkVPvL~d~~~g~~l~ES   94 (291)
T 2yv9_A           18 PLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE--A-FKKNFLGAQPPIMIEEEKELTYTDN   94 (291)
T ss_dssp             CEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH--H-HHHHHTTCCSCEEEEGGGTEEECSH
T ss_pred             CCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh--h-HHhcCCCCCCCEEEEcCCCeEEeCH
Confidence            4588998753 11   22599999999888    78899999888865322  2 667777889999998  88888766


Q ss_pred             HHHHHHH
Q 030914          144 DIILNMH  150 (169)
Q Consensus       144 d~l~~~~  150 (169)
                      ..+....
T Consensus        95 ~aI~~YL  101 (291)
T 2yv9_A           95 REIEGRI  101 (291)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=96.92  E-value=0.0012  Score=50.91  Aligned_cols=83  Identities=8%  Similarity=0.036  Sum_probs=49.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeeccHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGGSDII  146 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG~d~l  146 (169)
                      ..|+|+...    +||++|+.....|...     ++.|..+|++ ++    .+....+...+|.+  |-+|+.++-+.-.
T Consensus       121 k~vvV~F~a----~wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-~~----~l~~~~~i~~~PTl~~~~~G~~v~~~~G~  191 (217)
T 2trc_P          121 TTIVVNIYE----DGVRGCDALNSSLECLAAEYPMVKFCKIRAS-NT----GAGDRFSSDVLPTLLVYKGGELISNFISV  191 (217)
T ss_dssp             CEEEEEEEC----TTSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-HH----TCSTTSCGGGCSEEEEEETTEEEEEETTG
T ss_pred             cEEEEEEEC----CCCccHHHHHHHHHHHHHHCCCeEEEEEECC-cH----HHHHHCCCCCCCEEEEEECCEEEEEEeCC
Confidence            345555443    8999999999888653     4667777775 22    23333466788876  4488776533221


Q ss_pred             HHH----HhcccHHHHHhccccc
Q 030914          147 LNM----HQSGELKEKLKGIASN  165 (169)
Q Consensus       147 ~~~----~~~g~L~~~L~~~~~~  165 (169)
                      ...    ....+|.++|...++.
T Consensus       192 ~~~~g~~~~~~~Le~~L~~~g~l  214 (217)
T 2trc_P          192 AEQFAEDFFAADVESFLNEYGLL  214 (217)
T ss_dssp             GGGSCSSCCHHHHHHHHHTTTCS
T ss_pred             cccCcccCCHHHHHHHHHHcCCC
Confidence            111    0014577888776653

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=96.91  E-value=0.00064  Score=52.00  Aligned_cols=70  Identities=10%  Similarity=0.071  Sum_probs=53.7

Q ss_pred             CeEEEeecCCCCCCC-----ccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQC-----GFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C-----~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.|     ++|.+++-+|...||+|+.+.++.......++.+.+...++|.+..||..|.....+...
T Consensus        18 ~~~Ly~~-----~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   92 (230)
T 2ycd_A           18 TITVFER-----SPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQPFGQIPSYEQGDLILFESGAIVMH   92 (230)
T ss_dssp             EEEEESS-----CTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEecC-----CCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            4889977     678     899999999999999999988863212223455666778999999999888876655554

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.88  E-value=0.0038  Score=47.21  Aligned_cols=68  Identities=16%  Similarity=0.324  Sum_probs=45.2

Q ss_pred             HHHHHHHHh-h--cCCe--EEEeecCCCCC-CCccHHHHHHHHhc-----CCCCeEEEEcCCCHHHHHHHHHhcCCCCCc
Q 030914           63 LKEVVEQDV-K--ENPV--MLYMKGVPEFP-QCGFSSLAVRVLGA-----YNVPISARNILEDPELKSAVKAFSHWPTFP  131 (169)
Q Consensus        63 ~~~~i~~~~-~--~~~V--vly~k~~~~~~-~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~~~~~l~~~~g~~t~P  131 (169)
                      ..+.+++.+ .  .++|  +.|..     + ||++|+++...|++     -+|.+..+|++. ++. ..+.+..|-..+|
T Consensus         8 ~~~~~~~~~~~~~~~~v~lv~f~~-----~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~-~~~-~~~~~~~~v~~~P   80 (226)
T 1a8l_A            8 DKKVIKEEFFSKMVNPVKLIVFVR-----KDHCQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEG-KELAKRYRIDRAP   80 (226)
T ss_dssp             HHHHHHHHTGGGCCSCEEEEEEEC-----SSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHH-HHHHHHTTCCSSS
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEec-----CCCCchhHHHHHHHHHHHhhCCceEEEEEeCCC-ccc-HHHHHHcCCCcCc
Confidence            445566666 2  3454  44554     7 99999999998876     347788888874 112 2344455778999


Q ss_pred             EEEe--CC
Q 030914          132 QIFI--KG  137 (169)
Q Consensus       132 ~vfi--~g  137 (169)
                      .+.+  +|
T Consensus        81 t~~~~~~g   88 (226)
T 1a8l_A           81 ATTITQDG   88 (226)
T ss_dssp             EEEEEETT
T ss_pred             eEEEEcCC
Confidence            9977  66

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.87  E-value=0.00082  Score=47.56  Aligned_cols=79  Identities=16%  Similarity=0.138  Sum_probs=45.7

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee---ccH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG---GSD  144 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG---G~d  144 (169)
                      .|+|+...    +||+.|+.....|++.     ++.+..+|++...       +..+...+|.+++  +|+.+.   |..
T Consensus        32 ~vvv~f~a----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~-------~~~~i~~~Pt~~~~~~G~~v~~~~G~~  100 (135)
T 2dbc_A           32 WVVIHLYR----SSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI-------EHYHDNCLPTIFVYKNGQIEGKFIGII  100 (135)
T ss_dssp             EEEEEECC----TTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC-------SSCCSSCCSEEEEESSSSCSEEEESTT
T ss_pred             EEEEEEEC----CCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc-------ccCCCCCCCEEEEEECCEEEEEEEeEE
Confidence            45555443    7999999988877543     3556667776553       3446678898744  776443   332


Q ss_pred             HHHH-HHhcccHHHHHhcccc
Q 030914          145 IILN-MHQSGELKEKLKGIAS  164 (169)
Q Consensus       145 ~l~~-~~~~g~L~~~L~~~~~  164 (169)
                      ++.. -....+|.++|+..+.
T Consensus       101 ~~~~~~~~~~~l~~~l~~~~~  121 (135)
T 2dbc_A          101 ECGGINLKLEELEWKLSEVGA  121 (135)
T ss_dssp             TTTCTTCCHHHHHHHHHHHTS
T ss_pred             eeCCCcCCHHHHHHHHHHcCC
Confidence            1100 0022456777766544

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=96.87  E-value=0.0013  Score=50.36  Aligned_cols=59  Identities=17%  Similarity=0.369  Sum_probs=40.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      ..|+|+..+    +||++|+.....|.+    ++  +.+..+|++.++++.    +..+...+|.+++  +|+.+
T Consensus        31 k~vvv~F~a----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~G~~~   97 (222)
T 3dxb_A           31 GAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTA----PKYGIRGIPTLLLFKNGEVA   97 (222)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTTG----GGGTCCSBSEEEEEETTEEE
T ss_pred             CEEEEEEEC----CcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHHH----HHcCCCcCCEEEEEECCeEE
Confidence            345554443    799999988876643    32  677888998876643    3446788998877  78654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=96.86  E-value=0.002  Score=50.79  Aligned_cols=60  Identities=12%  Similarity=0.259  Sum_probs=42.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      ..+|+|+...    +||++|+.....|++.      ++.+..+|++.++++    .+..|..++|++++  +|+.+
T Consensus        26 ~~~v~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~   93 (287)
T 3qou_A           26 TTPVLFYFWS----ERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMI----AAQFGLRAIPTVYLFQNGQPV   93 (287)
T ss_dssp             TSCEEEEEEC----TTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHH----HHTTTCCSSSEEEEEETTEEE
T ss_pred             CCeEEEEEEC----CCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHH----HHHcCCCCCCeEEEEECCEEE
Confidence            3455555443    7999999877766432      377888999888754    44457789999865  88654

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=96.86  E-value=0.0021  Score=44.42  Aligned_cols=45  Identities=16%  Similarity=0.141  Sum_probs=33.6

Q ss_pred             CCCccHHHHHHHHhcC-----------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGAY-----------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-----------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||++|++....|++.           ++.+..+|++.++++    .+..+-..+|.+++
T Consensus        43 ~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~   98 (127)
T 3h79_A           43 PWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDV----IERMRVSGFPTMRY   98 (127)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHH----HHHTTCCSSSEEEE
T ss_pred             CccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHhH----HHhcCCccCCEEEE
Confidence            7999999998877653           366778888877664    34446788998754

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=96.84  E-value=0.0083  Score=42.44  Aligned_cols=66  Identities=15%  Similarity=0.129  Sum_probs=41.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHH---------------------HHHHHHhc
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPEL---------------------KSAVKAFS  125 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~---------------------~~~l~~~~  125 (169)
                      ..++|+.-+    .|||.|......|.+       .++.+..++++.+.+.                     ...+.+..
T Consensus        30 k~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  105 (152)
T 2lrn_A           30 KYVLVDFWF----AGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESY  105 (152)
T ss_dssp             SEEEEEEEC----TTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHT
T ss_pred             CEEEEEEEC----CCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHh
Confidence            345544443    699999986665533       3466777777754322                     23455556


Q ss_pred             CCCCCcEEEe---CCeEeecc
Q 030914          126 HWPTFPQIFI---KGEFIGGS  143 (169)
Q Consensus       126 g~~t~P~vfi---~g~~iGG~  143 (169)
                      |...+|.+|+   +|+.+..+
T Consensus       106 ~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A          106 CIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             TCCSSCEEEEECTTSEEEEEC
T ss_pred             CCCcCCeEEEECCCCeEEEee
Confidence            7788999765   68877654

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=96.82  E-value=0.00077  Score=47.22  Aligned_cols=89  Identities=15%  Similarity=0.092  Sum_probs=55.3

Q ss_pred             HHHHHhhcC---CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--Ee
Q 030914           66 VVEQDVKEN---PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FI  135 (169)
Q Consensus        66 ~i~~~~~~~---~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi  135 (169)
                      +.+.+.+..   .|+++...    +||+.|+.+...|++.     ++.|..+|++..       .+..+-.++|.+  |-
T Consensus        13 f~~~v~~~~~~~~vvv~F~a----~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT~~~fk   81 (118)
T 3evi_A           13 YVNEVTNAEEDVWVIIHLYR----SSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPTIFVYK   81 (118)
T ss_dssp             HHHHTTTCCTTCEEEEEEEC----TTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSEEEEEE
T ss_pred             HHHHHHhcCCCCeEEEEEeC----CCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCEEEEEE
Confidence            344444443   46665443    8999999998888653     477888888753       134467789987  55


Q ss_pred             CCeEeeccHHHHHH----HhcccHHHHHhccccc
Q 030914          136 KGEFIGGSDIILNM----HQSGELKEKLKGIASN  165 (169)
Q Consensus       136 ~g~~iGG~d~l~~~----~~~g~L~~~L~~~~~~  165 (169)
                      ||+.++...-...+    ....+|+.+|+..+..
T Consensus        82 ~G~~v~~~~G~~~~gg~~~~~~~le~~L~~~g~i  115 (118)
T 3evi_A           82 NGQIEAKFIGIIECGGINLKLEELEWKLAEVGAI  115 (118)
T ss_dssp             TTEEEEEEESTTTTTCSSCCHHHHHHHHHTTTSC
T ss_pred             CCEEEEEEeChhhhCCCCCCHHHHHHHHHHcCCc
Confidence            88766533222211    2335678888776654

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.79  E-value=0.0057  Score=46.22  Aligned_cols=54  Identities=26%  Similarity=0.468  Sum_probs=39.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhc----------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGA----------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~----------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      ++.|..     +||++|++....|++          .++.+..+|++.++++.    +..|...+|.+++  +|+
T Consensus       138 ~v~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~  203 (226)
T 1a8l_A          138 ILVFVT-----PTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWA----DQYNVMAVPKIVIQVNGE  203 (226)
T ss_dssp             EEEEEC-----SSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHH----HHTTCCSSCEEEEEETTE
T ss_pred             EEEEeC-----CCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHHHH----HhCCCcccCeEEEEeCCc
Confidence            455666     799999998887755          25778888988776643    3446788999877  554

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=95.81  E-value=0.00021  Score=49.67  Aligned_cols=51  Identities=8%  Similarity=0.184  Sum_probs=30.5

Q ss_pred             CCCccHHHHHHHH---hc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe----CCeE
Q 030914           87 PQCGFSSLAVRVL---GA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQIFI----KGEF  139 (169)
Q Consensus        87 ~~C~~c~~a~~~L---~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi----~g~~  139 (169)
                      +||++|++....|   .+    .+  +.+..+|++.  .-...+.+..+...+|.+++    +|+.
T Consensus        29 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~~~v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           29 EHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDT--PEGQELARRYRVPGTPTFVFLVPKAGAW   92 (130)
Confidence            7999999987665   22    22  3344445532  22233444556778999866    4765

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=96.77  E-value=0.0089  Score=40.73  Aligned_cols=63  Identities=19%  Similarity=0.228  Sum_probs=39.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHH-HH------------------HHHHhcCCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPEL-KS------------------AVKAFSHWP  128 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~-~~------------------~l~~~~g~~  128 (169)
                      ...++|+.-+    +||++|......|.+.     ++.+..++++.+.+. ++                  .+.+..|..
T Consensus        25 ~k~~ll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~  100 (136)
T 1zzo_A           25 GKPAVLWFWA----PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVT  100 (136)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCC
T ss_pred             CCeEEEEEEc----CCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCC
Confidence            3445544433    6999999887766543     577777887654322 11                  223334567


Q ss_pred             CCcEEEe---CCeE
Q 030914          129 TFPQIFI---KGEF  139 (169)
Q Consensus       129 t~P~vfi---~g~~  139 (169)
                      .+|.+++   +|+.
T Consensus       101 ~~P~~~~id~~g~i  114 (136)
T 1zzo_A          101 QQPAYAFVDPHGNV  114 (136)
T ss_dssp             SSSEEEEECTTCCE
T ss_pred             CCceEEEECCCCCE
Confidence            8999877   7876

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=96.75  E-value=0.00085  Score=53.02  Aligned_cols=84  Identities=8%  Similarity=0.044  Sum_probs=49.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeeccHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGGSDII  146 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG~d~l  146 (169)
                      ..|+|+...    +||+.|+.....|...     ++.|..+|++.     ..+....+...+|.+++  +|+.++-+--.
T Consensus       134 k~VvV~Fya----~wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-----~~l~~~~~I~~~PTll~~~~G~~v~~~vG~  204 (245)
T 1a0r_P          134 TTIVVHIYE----DGIKGCDALNSSLICLAAEYPMVKFCKIKASN-----TGAGDRFSSDVLPTLLVYKGGELLSNFISV  204 (245)
T ss_dssp             CEEEEEEEC----TTSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-----HCCTTSSCTTTCSEEEEEETTEEEEEETTG
T ss_pred             CEEEEEEEC----CCChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-----HHHHHHCCCCCCCEEEEEECCEEEEEEeCC
Confidence            345555443    7999999988877543     46677777742     22333345677887744  88766532211


Q ss_pred             HHH----HhcccHHHHHhcccccC
Q 030914          147 LNM----HQSGELKEKLKGIASNQ  166 (169)
Q Consensus       147 ~~~----~~~g~L~~~L~~~~~~~  166 (169)
                      ...    .....|..+|+.+++..
T Consensus       205 ~~~~g~~~~~e~Le~~L~~~g~l~  228 (245)
T 1a0r_P          205 TEQLAEEFFTGDVESFLNEYGLLP  228 (245)
T ss_dssp             GGGSCTTCCHHHHHHHHHTTTCSC
T ss_pred             cccccccccHHHHHHHHHHcCCCC
Confidence            111    11124888888776643

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=96.71  E-value=0.0039  Score=48.13  Aligned_cols=69  Identities=14%  Similarity=0.067  Sum_probs=52.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhcCCCCCcEEEeC-C--eEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFSHWPTFPQIFIK-G--EFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~g~~t~P~vfi~-g--~~iGG~d~l~~~  149 (169)
                      .+.||..     + ||+|.+++-+|...|++|+.+.|+..  +....++.+.+...++|.+..+ |  ..|.....+...
T Consensus         3 m~~Ly~~-----~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~Y   76 (244)
T 4ecj_A            3 MIDLYTA-----A-TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIY   76 (244)
T ss_dssp             CEEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHH
T ss_pred             EEEEecC-----C-CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHH
Confidence            3678865     5 99999999999999999999888642  2344567778888899999996 4  366665554443

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.71  E-value=0.0053  Score=44.16  Aligned_cols=59  Identities=8%  Similarity=0.111  Sum_probs=39.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFI  140 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~i  140 (169)
                      .+|+|+...    +||+.|+.....|.+.    +  +.+..+|++.++++.    +..+-..+|.++  -+|+.+
T Consensus        24 k~vlv~F~a----~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~----~~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           24 KVLVLRFGR----DEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVYT----QYFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             SEEEEEEEC----TTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHHH----HHTTCCSSSEEEEEETTEEE
T ss_pred             CEEEEEEEC----CCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHHH----HHcCCCccCeEEEEECCeEE
Confidence            445554443    7999999988877543    2  556778888777654    334567788764  477666

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=96.67  E-value=0.0047  Score=46.15  Aligned_cols=67  Identities=15%  Similarity=-0.000  Sum_probs=50.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeE-----eeccHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEF-----IGGSDIILN  148 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~-----iGG~d~l~~  148 (169)
                      .+.||..     +.||+|.+++-+|...|++|+.+.++...  ...++..+...++|.+..+|..     +.....+..
T Consensus         5 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~~   76 (211)
T 1oe8_A            5 HIKVIYF-----NGRGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIAR   76 (211)
T ss_dssp             EEEEEES-----CTTSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHHH
T ss_pred             ceEEEEe-----CCCChHHHHHHHHHHcCCCceEEEechHh--HHHhcccCCCCCCCEEEECCccccceeeccHHHHHH
Confidence            4778866     57999999999999999999999886432  2345556677899999887653     665544444

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=96.63  E-value=0.0069  Score=42.11  Aligned_cols=67  Identities=15%  Similarity=0.161  Sum_probs=41.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHH----------HHhcCCCCeEEEEcCCCHHHHHHH-HH------------------
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVR----------VLGAYNVPISARNILEDPELKSAV-KA------------------  123 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~----------~L~~~~v~~~~~di~~~~~~~~~l-~~------------------  123 (169)
                      ...|+|+.-+    +|||.|.+...          .+...++.+..++++.+++....+ ++                  
T Consensus        27 gk~vll~F~a----~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  102 (142)
T 3ewl_A           27 AQYTMLFFYD----PDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTR  102 (142)
T ss_dssp             CSEEEEEECC----SSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHT
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhH
Confidence            3455555444    69999998633          334457778888888665443322 21                  


Q ss_pred             -hcCCCCCcEEEe---CCeEeecc
Q 030914          124 -FSHWPTFPQIFI---KGEFIGGS  143 (169)
Q Consensus       124 -~~g~~t~P~vfi---~g~~iGG~  143 (169)
                       ..|...+|.+|+   +|+.+.+.
T Consensus       103 ~~~~v~~~P~~~lid~~G~i~~~~  126 (142)
T 3ewl_A          103 QLYDIRATPTIYLLDGRKRVILKD  126 (142)
T ss_dssp             TCSCCCSSSEEEEECTTCBEEECS
T ss_pred             HHcCCCCCCeEEEECCCCCEEecC
Confidence             346678898765   57777653

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=96.62  E-value=0.0084  Score=41.91  Aligned_cols=65  Identities=14%  Similarity=0.241  Sum_probs=40.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc----------CCCCeEEEEcCCCHHH-HHH-------------------HH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----------YNVPISARNILEDPEL-KSA-------------------VK  122 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----------~~v~~~~~di~~~~~~-~~~-------------------l~  122 (169)
                      ...|+|+.-+    +||++|+.....|.+          .++.+..++++.+.+. ++.                   +.
T Consensus        31 gk~vll~F~a----~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  106 (142)
T 3eur_A           31 AEYTLLFINN----PGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNK  106 (142)
T ss_dssp             CSEEEEEECC----SSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHT
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhh
Confidence            3456665544    699999877665554          4677777787766443 222                   22


Q ss_pred             HhcCCCCCcEEEe---CCeEee
Q 030914          123 AFSHWPTFPQIFI---KGEFIG  141 (169)
Q Consensus       123 ~~~g~~t~P~vfi---~g~~iG  141 (169)
                      +..+...+|.+|+   +|+.++
T Consensus       107 ~~~~v~~~P~~~lid~~G~i~~  128 (142)
T 3eur_A          107 NLYDLRAIPTLYLLDKNKTVLL  128 (142)
T ss_dssp             TCSCCTTCSEEEEECTTCBEEE
T ss_pred             hhcCCCcCCeEEEECCCCcEEe
Confidence            2335578899876   576665

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.61  E-value=0.004  Score=42.86  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=33.2

Q ss_pred             CCCccHHHHHHHHhc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||++|++....|.+    ++  +.+..+|++.++++.+.    .+...+|.+++
T Consensus        45 ~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~----~~v~~~Pt~~~   95 (130)
T 2dml_A           45 PWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGGQ----YGVQGFPTIKI   95 (130)
T ss_dssp             TTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHH----HTCCSSSEEEE
T ss_pred             CCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHH----cCCCccCEEEE
Confidence            799999988776643    22  67788899887765443    46788999977

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=96.59  E-value=0.008  Score=44.58  Aligned_cols=32  Identities=9%  Similarity=-0.066  Sum_probs=21.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHh----cCC--CCeEEEEc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLG----AYN--VPISARNI  111 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~--v~~~~~di  111 (169)
                      .|+.|..     ++||+|++.-..|.    +++  |.|..+.+
T Consensus        28 ~i~~f~d-----~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           28 EVVELFW-----YGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEC-----CCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            3667777     79999998877664    343  44555555

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=96.58  E-value=0.0024  Score=46.72  Aligned_cols=84  Identities=13%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             ccCCCCCcccccCCcccHHHHHHHHhh-cCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHH
Q 030914           46 THEDFRPTSKVDASGLSLKEVVEQDVK-ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELK  118 (169)
Q Consensus        46 ~~~~~k~~s~~pt~~~~~~~~i~~~~~-~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~  118 (169)
                      .-.++.+.-+|.    ++++.+..... ..+|+|+..+    +|||+|+.....|.+.      ++.+..+|++.+++. 
T Consensus        22 ~~~~~~~~i~w~----~~~~~~~~~~~~~k~vlv~F~a----~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~-   92 (164)
T 1sen_A           22 LGKGFGDHIHWR----TLEDGKKEAAASGLPLMVIIHK----SWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP-   92 (164)
T ss_dssp             CCTTSCTTSCBC----CHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC-
T ss_pred             cccccccccccc----CHHHHHHHHHhcCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchH-
Confidence            344555556673    34455555554 4456665554    7999999999988763      478888888765441 


Q ss_pred             HHHHHhcCC--CCCcEEE-e--CCeEe
Q 030914          119 SAVKAFSHW--PTFPQIF-I--KGEFI  140 (169)
Q Consensus       119 ~~l~~~~g~--~t~P~vf-i--~g~~i  140 (169)
                        +....+.  ..+|.++ +  +|+.+
T Consensus        93 --~~~~~~~~~~~~Pt~~~~d~~G~~~  117 (164)
T 1sen_A           93 --KDEDFSPDGGYIPRILFLDPSGKVH  117 (164)
T ss_dssp             --SCGGGCTTCSCSSEEEEECTTSCBC
T ss_pred             --HHHHhcccCCcCCeEEEECCCCCEE
Confidence              1122233  5689874 4  57643

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=96.57  E-value=0.0077  Score=45.30  Aligned_cols=69  Identities=13%  Similarity=0.088  Sum_probs=49.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH--H--HHHHHHHhc----CCCCCcEEEeCCeEeeccHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP--E--LKSAVKAFS----HWPTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~--~--~~~~l~~~~----g~~t~P~vfi~g~~iGG~d~l~  147 (169)
                      +.||..     +.||+|.+++-+|...||+|+.+.++...  +  ..+.+...+    ...++|.+..||..|.....+.
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI~   77 (218)
T 2c4j_A            3 MTLGYW-----NIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAIL   77 (218)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHH
T ss_pred             cEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEeeeHHHHH
Confidence            567776     57999999999999999999988876431  1  122333333    2568999988888887765555


Q ss_pred             HH
Q 030914          148 NM  149 (169)
Q Consensus       148 ~~  149 (169)
                      ..
T Consensus        78 ~y   79 (218)
T 2c4j_A           78 RY   79 (218)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=96.55  E-value=0.0011  Score=49.72  Aligned_cols=69  Identities=14%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEE--cCCCH-HHHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARN--ILEDP-ELKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~d--i~~~~-~~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|.+++-+|...|++|+.+.  +...+ ....++.+.+...++|.+. .||..|.....+...
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   75 (214)
T 4id0_A            3 LTLFHN-----PASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDY   75 (214)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHH
T ss_pred             eEEecC-----CCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHH
Confidence            678877     689999999999999999976654  43222 2223455667778999999 688877766555443

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=96.54  E-value=0.0086  Score=45.20  Aligned_cols=69  Identities=17%  Similarity=0.184  Sum_probs=49.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH----HHHHHHHHhc----CCCCCcEEEeCCeEeeccHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP----ELKSAVKAFS----HWPTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~----~~~~~l~~~~----g~~t~P~vfi~g~~iGG~d~l~  147 (169)
                      +.||.-     +.||+|.+++-+|...||+|+.+.++...    ...+.+.+..    ...++|.+..||..|.....+.
T Consensus         2 ~~L~~~-----~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~   76 (219)
T 1gsu_A            2 VTLGYW-----DIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAIL   76 (219)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEETTEEEESHHHHH
T ss_pred             cEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEECCEEEecHHHHH
Confidence            356665     56999999999999999999988886421    1223444333    4568999998888887766555


Q ss_pred             HH
Q 030914          148 NM  149 (169)
Q Consensus       148 ~~  149 (169)
                      ..
T Consensus        77 ~y   78 (219)
T 1gsu_A           77 RY   78 (219)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=96.54  E-value=0.00031  Score=46.08  Aligned_cols=35  Identities=3%  Similarity=-0.089  Sum_probs=30.2

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVP   41 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl   41 (169)
                      +++|.+- ++.|.|+|+.++.++|.++|++|.. ||.
T Consensus         2 v~iY~~~-~~~~~Cp~C~~ak~~L~~~gi~y~~idI~   37 (87)
T 1aba_A            2 FKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIM   37 (87)
T ss_dssp             EEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEEeC-CCCCcCccHHHHHHHHHHcCCCEEEEEee
Confidence            3567664 7888999999999999999999988 886

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=96.53  E-value=0.0083  Score=41.06  Aligned_cols=63  Identities=21%  Similarity=0.292  Sum_probs=39.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHH-HHH-----------------HHHHhcCCCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPE-LKS-----------------AVKAFSHWPT  129 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~-~~~-----------------~l~~~~g~~t  129 (169)
                      ...++|+..+    +||++|.+....|.+.     ++.+..++++.+++ +++                 .+.+..|...
T Consensus        24 ~k~~lv~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~   99 (136)
T 1lu4_A           24 GKPAVLWFWT----PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPW   99 (136)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCS
T ss_pred             CCEEEEEEEC----CcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCC
Confidence            3455554433    6999999877766433     57777788776433 222                 2233346778


Q ss_pred             CcEEEe---CCeE
Q 030914          130 FPQIFI---KGEF  139 (169)
Q Consensus       130 ~P~vfi---~g~~  139 (169)
                      +|.+++   +|+.
T Consensus       100 ~P~~~lid~~G~i  112 (136)
T 1lu4_A          100 QPAFVFYRADGTS  112 (136)
T ss_dssp             SSEEEEECTTSCE
T ss_pred             CCEEEEECCCCcE
Confidence            999876   6765

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=96.53  E-value=0.0021  Score=43.68  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=35.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC-----------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ..++|+..+    +||++|++....|++.           ++.+..+|++.++     +.+  +...+|.+++
T Consensus        26 ~~vlv~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~--~v~~~Pt~~~   87 (121)
T 2djj_A           26 KDVLIEFYA----PWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-----VPD--EIQGFPTIKL   87 (121)
T ss_dssp             SCEEEEEEC----SSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-----CSS--CCSSSSEEEE
T ss_pred             CCEEEEEEC----CCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-----ccc--ccCcCCeEEE
Confidence            345544443    7999999988777542           4777888887665     222  7789999866

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=96.51  E-value=0.006  Score=45.38  Aligned_cols=69  Identities=14%  Similarity=0.099  Sum_probs=51.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+.||..     + +++|.+++-+|...|++|+.+.|+.......++.+.+...++|.+..||..|.....+...
T Consensus         2 ~~~Ly~~-----~-~s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   70 (207)
T 2x64_A            2 HMKLYIM-----P-GACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNPSGAVPALQVGDWVLTQNAAILNY   70 (207)
T ss_dssp             CEEEEEC-----T-TSTTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCTTCCSCEEEETTEEECCHHHHHHH
T ss_pred             eEEEEcC-----C-CCcHHHHHHHHHHcCCCcceEEecccccCChhHHhcCCCCcCCeEeECCEEEeeHHHHHHH
Confidence            4678875     3 3469999999999999999998874322224566677778999999889888876655553

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=96.49  E-value=0.0097  Score=44.73  Aligned_cols=70  Identities=16%  Similarity=0.042  Sum_probs=48.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||.-     +.||+|.+++-+|...||+|+.+.++..  ++........+ ...++|.+..||..|.....+...
T Consensus         1 ~~~L~y~-----~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~Y   73 (216)
T 2fhe_A            1 PAKLGYW-----KIRGLQQPVRLLLEYLGEKYEEQIYERDDGEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRY   73 (216)
T ss_dssp             CEEEEEE-----SSSTTTHHHHHHHHHTTCCEEEEEECTTCHHHHHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             CcEEEEc-----CCCchhHHHHHHHHHcCCCceEEeeCCCchhhhhccccccCCCCCCCCEEEECCEEEEeHHHHHHH
Confidence            3566665     4699999999999999999999888743  22211111122 356899998888888776555543

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=96.47  E-value=0.0032  Score=47.43  Aligned_cols=69  Identities=12%  Similarity=-0.039  Sum_probs=48.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcC--CCHHHHHH-HHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNIL--EDPELKSA-VKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~--~~~~~~~~-l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||.-     +.||+|.+++-+|...|++|+.+.|+  ..++.... ....+...++|.+..||..|.....+...
T Consensus         3 ~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~y   74 (218)
T 3iso_A            3 PVLGYW-----KIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRY   74 (218)
T ss_dssp             CEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEETTEEEESHHHHHHH
T ss_pred             cEEEEe-----CCCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEECCEEEecHHHHHHH
Confidence            567665     57999999999999999999999985  22222211 11123456899998888878776555443

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.47  E-value=0.0073  Score=44.05  Aligned_cols=20  Identities=25%  Similarity=0.233  Sum_probs=16.8

Q ss_pred             CCCCCcEEEeCCeEeeccHH
Q 030914          126 HWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus       126 g~~t~P~vfi~g~~iGG~d~  145 (169)
                      |-..+|.++|||+.+.|...
T Consensus       146 gv~gtPt~vvng~~~~G~~~  165 (175)
T 1z6m_A          146 HIQFVPTIIIGEYIFDESVT  165 (175)
T ss_dssp             TCCSSCEEEETTEEECTTCC
T ss_pred             CCCCcCeEEECCEEccCCCC
Confidence            67899999999999988543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=96.46  E-value=0.0054  Score=44.75  Aligned_cols=83  Identities=12%  Similarity=0.119  Sum_probs=49.4

Q ss_pred             CCCCCcccccCCcccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHH
Q 030914           48 EDFRPTSKVDASGLSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY-------NVPISARNILEDPELKS  119 (169)
Q Consensus        48 ~~~k~~s~~pt~~~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~  119 (169)
                      ..+...-+|.+   +.++.++..... .+|+|+...    +||+.|+.....+.+.       +..|..++|+.+..-  
T Consensus        21 ~~~~~~i~W~~---~~~~al~~A~~~~KpVlV~F~A----~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~--   91 (151)
T 3ph9_A           21 RGWGDDITWVQ---TYEEGLFYAQKSKKPLMVIHHL----EDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD--   91 (151)
T ss_dssp             TTSCTTSCCCS---SHHHHHHHHHHHTCCEEEEECC----TTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC--
T ss_pred             ccccCCCcchh---CHHHHHHHHHHcCCcEEEEEEC----CCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh--
Confidence            33444445643   567777766654 455555443    7999999988866542       246888888643211  


Q ss_pred             HHHHhcCCCCCcEEEe---CCeEe
Q 030914          120 AVKAFSHWPTFPQIFI---KGEFI  140 (169)
Q Consensus       120 ~l~~~~g~~t~P~vfi---~g~~i  140 (169)
                       +....+...+|.+++   +|+.+
T Consensus        92 -~~~~~~v~~~PT~~f~~~~G~~v  114 (151)
T 3ph9_A           92 -KNLSPDGQYVPRIMFVDPSLTVR  114 (151)
T ss_dssp             -GGGCTTCCCSSEEEEECTTSCBC
T ss_pred             -hHhhcCCCCCCEEEEECCCCCEE
Confidence             112235578898854   56543

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=96.45  E-value=0.015  Score=43.75  Aligned_cols=61  Identities=18%  Similarity=0.251  Sum_probs=41.6

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      ....++|+..+    +||++|+.....|.+.      .+.+..+|++.++++    .+..+...+|.+++  +|+.+
T Consensus       113 ~~~~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~G~~~  181 (210)
T 3apq_A          113 SGELWFVNFYS----PGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRML----CRMKGVNSYPSLFIFRSGMAA  181 (210)
T ss_dssp             HSCCEEEEEEC----TTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHH----HHHTTCCSSSEEEEECTTSCC
T ss_pred             cCCcEEEEEeC----CCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHHH----HHHcCCCcCCeEEEEECCCce
Confidence            34455554443    7999999988777542      367788898887654    33456788999876  77643

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=96.41  E-value=0.00072  Score=50.23  Aligned_cols=52  Identities=8%  Similarity=0.109  Sum_probs=32.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhc--CCCCCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFS--HWPTFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~--g~~t~P~vfi  135 (169)
                      |+.|..     +|||.|+...-.|++.     ++.+..+|++.+++.   ..++.  |..++|.+++
T Consensus        58 vv~F~A-----~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~---~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           58 LLVAGE-----MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDD---LRQRLALERIAIPLVLV  116 (167)
T ss_dssp             EEEECC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHH---TTTTTTCSSCCSSEEEE
T ss_pred             EEEEEC-----CCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHH---HHHHHHcCCCCcCeEEE
Confidence            445555     6999999988877643     355666666543332   22232  4689998543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.41  E-value=0.0045  Score=47.08  Aligned_cols=51  Identities=18%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             CCCccHHHHHHHHh-------cC--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           87 PQCGFSSLAVRVLG-------AY--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        87 ~~C~~c~~a~~~L~-------~~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      +||++|+.....|.       ..  ++.+..+|++.++++    .+..|..++|.+++  +|+.+.
T Consensus       157 ~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~g~~~~  218 (241)
T 3idv_A          157 PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDL----AKRFDVSGYPTLKIFRKGRPYD  218 (241)
T ss_dssp             TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHH----HHHcCCcccCEEEEEECCeEEE
Confidence            79999986544332       21  288889999888764    34446788998855  787664

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=96.40  E-value=0.0039  Score=43.87  Aligned_cols=64  Identities=11%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHH----hcC---CCCeEEEEcCCCHH-HHH------------------HHHHhcCC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVL----GAY---NVPISARNILEDPE-LKS------------------AVKAFSHW  127 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~---~v~~~~~di~~~~~-~~~------------------~l~~~~g~  127 (169)
                      ..++|+.-+    +|||+|......|    +++   ++.+..++++.+.+ +++                  .+.+..|.
T Consensus        31 k~~lv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  106 (152)
T 2lja_A           31 KYIYIDVWA----TWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLI  106 (152)
T ss_dssp             SEEEEEECC----SSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTC
T ss_pred             CEEEEEEEC----CcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCc
Confidence            345554443    6999998665544    333   45666777776542 222                  34444566


Q ss_pred             CCCcEEEe---CCeEee
Q 030914          128 PTFPQIFI---KGEFIG  141 (169)
Q Consensus       128 ~t~P~vfi---~g~~iG  141 (169)
                      ..+|.+|+   +|+.+.
T Consensus       107 ~~~P~~~lid~~G~i~~  123 (152)
T 2lja_A          107 NGIPRFILLDRDGKIIS  123 (152)
T ss_dssp             CSSCCEEEECTTSCEEE
T ss_pred             CCCCEEEEECCCCeEEE
Confidence            78998877   677665

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.38  E-value=0.01  Score=43.05  Aligned_cols=51  Identities=16%  Similarity=0.111  Sum_probs=31.1

Q ss_pred             ccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHH-------HHHHhcC--CCCeEEEEcCCCH
Q 030914           61 LSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLA-------VRVLGAY--NVPISARNILEDP  115 (169)
Q Consensus        61 ~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a-------~~~L~~~--~v~~~~~di~~~~  115 (169)
                      .+..+.+...... ..|+|+...    +||++|++.       -.+-+..  ++.+..+|++.+.
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~A----~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~   94 (172)
T 3f9u_A           34 DDYDLGMEYARQHNKPVMLDFTG----YGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKT   94 (172)
T ss_dssp             SCHHHHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCC
T ss_pred             hhHHHHHHHHHHcCCeEEEEEEC----CCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCccc
Confidence            3566777665544 456665544    699999986       2222222  4677778887654

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=96.35  E-value=0.014  Score=44.21  Aligned_cols=64  Identities=20%  Similarity=0.331  Sum_probs=42.3

Q ss_pred             HHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC-------C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--C
Q 030914           69 QDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY-------N--VPISARNILEDPELKSAVKAFSHWPTFPQIFI--K  136 (169)
Q Consensus        69 ~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~-------~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~  136 (169)
                      +++..+ .++|+...    +||++|++....|.+.       +  +.+..+|++.++++    .+..|-..+|.+++  +
T Consensus        27 ~~~~~~~~v~v~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~   98 (241)
T 3idv_A           27 NFVADKDTVLLEFYA----PWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVL----ASRFDVSGYPTIKILKK   98 (241)
T ss_dssp             HHHTTCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHHH----HHHTTCCSSSEEEEEET
T ss_pred             HHHhcCCeEEEEEEC----CCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHHH----HHhcCCCcCCEEEEEcC
Confidence            334333 34444443    7999999887666432       2  78888999887764    34456788999855  6


Q ss_pred             CeEe
Q 030914          137 GEFI  140 (169)
Q Consensus       137 g~~i  140 (169)
                      |+.+
T Consensus        99 g~~~  102 (241)
T 3idv_A           99 GQAV  102 (241)
T ss_dssp             TEEE
T ss_pred             CCcc
Confidence            7654

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=96.35  E-value=0.022  Score=40.71  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=18.3

Q ss_pred             CCCccHHHHHHHHh----cC-CCCeEEEEcC
Q 030914           87 PQCGFSSLAVRVLG----AY-NVPISARNIL  112 (169)
Q Consensus        87 ~~C~~c~~a~~~L~----~~-~v~~~~~di~  112 (169)
                      .|||+|.+....|.    ++ ++.+..++++
T Consensus        47 ~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d   77 (165)
T 3ha9_A           47 AWCPSCVYMADLLDRLTEKYREISVIAIDFW   77 (165)
T ss_dssp             TTCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence            69999998776554    33 5666667776

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=96.35  E-value=0.021  Score=40.08  Aligned_cols=64  Identities=20%  Similarity=0.269  Sum_probs=39.0

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHH-HHH-----------------HHHHhcCCC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPE-LKS-----------------AVKAFSHWP  128 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~-~~~-----------------~l~~~~g~~  128 (169)
                      ..++|+..+    +|||+|......|.+       .++.+..++++.+++ ++.                 .+.+..|..
T Consensus        27 k~vlv~F~~----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  102 (151)
T 2f9s_A           27 KGVFLNFWG----TWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDVS  102 (151)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTCC
T ss_pred             CEEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCCC
Confidence            445554443    699999977665533       357777788866542 222                 233444677


Q ss_pred             CCcEEEe---CCeEee
Q 030914          129 TFPQIFI---KGEFIG  141 (169)
Q Consensus       129 t~P~vfi---~g~~iG  141 (169)
                      .+|.+|+   +|+.+.
T Consensus       103 ~~P~~~lid~~G~i~~  118 (151)
T 2f9s_A          103 PLPTTFLINPEGKVVK  118 (151)
T ss_dssp             SSCEEEEECTTSEEEE
T ss_pred             CCCeEEEECCCCcEEE
Confidence            8999654   676554

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=96.31  E-value=0.0056  Score=46.26  Aligned_cols=68  Identities=15%  Similarity=0.145  Sum_probs=53.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC---------H----HHHHHHHHhcCCCCCcEEEeCCeEeec
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED---------P----ELKSAVKAFSHWPTFPQIFIKGEFIGG  142 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~---------~----~~~~~l~~~~g~~t~P~vfi~g~~iGG  142 (169)
                      +.||..     +.| +|.+++-+|...|++|+.+.|+..         +    ....++.+.+...++|.+..+|..|..
T Consensus         3 ~~Ly~~-----~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~e   76 (225)
T 3lsz_A            3 LKIYGV-----YRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTE   76 (225)
T ss_dssp             CEEESC-----SSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEEETTEEEES
T ss_pred             EEEEeC-----CCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEEECCEEEEc
Confidence            568877     679 999999999999999999888531         1    134567777888899999999998887


Q ss_pred             cHHHHHH
Q 030914          143 SDIILNM  149 (169)
Q Consensus       143 ~d~l~~~  149 (169)
                      ...+...
T Consensus        77 S~aI~~y   83 (225)
T 3lsz_A           77 SLAITLH   83 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655543

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=96.31  E-value=0.011  Score=42.63  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=42.9

Q ss_pred             CeEEEeecCCCCCCC--ccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEeec
Q 030914           75 PVMLYMKGVPEFPQC--GFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIGG  142 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C--~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iGG  142 (169)
                      +|+++..+    +||  +.|+.+--+|++.      .+.+-.+|++.+++    +....|-.++|.+  |-||+.|+-
T Consensus        35 ~vlVdF~A----~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~----la~~ygV~siPTlilFkdG~~v~~  104 (137)
T 2qsi_A           35 IVVLFFRG----DAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERG----LMARFGVAVCPSLAVVQPERTLGV  104 (137)
T ss_dssp             EEEEEECC----CTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHH----HHHHHTCCSSSEEEEEECCEEEEE
T ss_pred             cEEEEEeC----CccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHH----HHHHcCCccCCEEEEEECCEEEEE
Confidence            57776654    689  9999988877543      35677788876665    4444577899987  669987763

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=96.28  E-value=0.021  Score=39.62  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=41.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc--------CCCCeEEEEcCCCHH--------------------HHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA--------YNVPISARNILEDPE--------------------LKSAVKAF  124 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~--------~~v~~~~~di~~~~~--------------------~~~~l~~~  124 (169)
                      ...++|+.-+    ++|++|+.....|.+        .++.+..++++.+++                    ....+.+.
T Consensus        28 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
T 1o73_A           28 GKTVFLYFSA----SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKT  103 (144)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEEEC----cCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHH
Confidence            3445555444    699999987776543        356677777776442                    12344444


Q ss_pred             cCCCCCcEEEe----CCeEeec
Q 030914          125 SHWPTFPQIFI----KGEFIGG  142 (169)
Q Consensus       125 ~g~~t~P~vfi----~g~~iGG  142 (169)
                      .+...+|.+|+    +|+.+.-
T Consensus       104 ~~v~~~Pt~~lid~~~G~i~~~  125 (144)
T 1o73_A          104 FGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCCCCEEEEEECCCCeEEec
Confidence            57778998865    4776653

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=96.27  E-value=0.0087  Score=44.99  Aligned_cols=69  Identities=14%  Similarity=0.016  Sum_probs=52.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH---HHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~---~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+.||..     +.+ +|.+++-+|...||+|+.+.|+...   ....++++.+...++|.+..||..+.....+...
T Consensus         3 ~~~Ly~~-----~~~-~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   74 (217)
T 4hz4_A            3 MITLHYL-----KQS-CSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQDGDLVLAEGNAIIQH   74 (217)
T ss_dssp             CEEEEEE-----SSS-TTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTSTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeec-----CCC-cHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCCCCCCCEEEECCEeeecHHHHHHH
Confidence            4678876     334 6999999999999999998886432   1235677778788999999999988876665554

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=96.26  E-value=0.0078  Score=42.51  Aligned_cols=44  Identities=7%  Similarity=0.076  Sum_probs=27.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPELKSA  120 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~~~~  120 (169)
                      ...|+|+.-+    +|||.|......|.+       .++.+..++++..+.+++.
T Consensus        24 gk~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~~   74 (151)
T 3raz_A           24 APVRIVNLWA----TWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGNF   74 (151)
T ss_dssp             SSEEEEEEEC----TTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHHH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHHH
Confidence            3455555444    699999987766643       2466777787655555443

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=96.20  E-value=0.012  Score=46.73  Aligned_cols=70  Identities=16%  Similarity=0.053  Sum_probs=52.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCC----eEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKG----EFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g----~~iG  141 (169)
                      +.+.||..      .||+|.+++-+|.+.      ||+|+.+.|+.  .+....++.+.+...++|.+..+|    ..|.
T Consensus        43 ~~~~Ly~~------~sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP~gkVPvL~~~~g~~~~~l~  116 (288)
T 3c8e_A           43 HPLQLYSL------GTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVF  116 (288)
T ss_dssp             SSEEEEEC------SSHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCTTCCSCEEEETTSSSCEEEE
T ss_pred             CceEEecC------CCCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEeCCCCCceEEe
Confidence            46889975      499999999999998      99999988863  222335677778788999999876    6666


Q ss_pred             ccHHHHHH
Q 030914          142 GSDIILNM  149 (169)
Q Consensus       142 G~d~l~~~  149 (169)
                      ....+...
T Consensus       117 ES~aI~~Y  124 (288)
T 3c8e_A          117 ESGSILLY  124 (288)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            65544443

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=96.19  E-value=0.012  Score=45.71  Aligned_cols=31  Identities=13%  Similarity=0.299  Sum_probs=22.0

Q ss_pred             eEEEeecCCCCCCCccHHHHHHH----HhcCCCCeEEEEc
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRV----LGAYNVPISARNI  111 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~----L~~~~v~~~~~di  111 (169)
                      |++|+.     ++||+|++.-..    ++.-+|.+..+.+
T Consensus       101 v~~F~D-----~~Cp~C~~~~~~l~~~~~~g~v~v~~~~~  135 (241)
T 1v58_A          101 VYVFAD-----PFCPYCKQFWQQARPWVDSGKVQLRTLLV  135 (241)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred             EEEEEC-----CCChhHHHHHHHHHHHHhCCcEEEEEEEC
Confidence            666777     899999998554    4443577776666

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=96.19  E-value=0.019  Score=41.53  Aligned_cols=31  Identities=16%  Similarity=0.309  Sum_probs=22.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCC-CCeEEEE
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYN-VPISARN  110 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-v~~~~~d  110 (169)
                      .|++|+.     +.||+|+++...|++++ |.+..++
T Consensus        17 ~vv~f~D-----~~Cp~C~~~~~~l~~l~~v~v~~~~   48 (147)
T 3gv1_A           17 KVAVFSD-----PDCPFCKRLEHEFEKMTDVTVYSFM   48 (147)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHTTCCSEEEEEEE
T ss_pred             EEEEEEC-----CCChhHHHHHHHHhhcCceEEEEEE
Confidence            3667776     89999999999998875 3444443

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=96.16  E-value=0.011  Score=41.72  Aligned_cols=64  Identities=16%  Similarity=0.191  Sum_probs=39.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC----CCCeEEEEcC--CCHH-H--------------------HHHHHHhcC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY----NVPISARNIL--EDPE-L--------------------KSAVKAFSH  126 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~v~~~~~di~--~~~~-~--------------------~~~l~~~~g  126 (169)
                      ..++|+.-+    +||+.|......|.+.    ++.+..++++  .+++ +                    ...+.+..|
T Consensus        31 k~vll~f~~----~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  106 (154)
T 3ia1_A           31 KPAVIVFWA----SWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK  106 (154)
T ss_dssp             SSEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS
T ss_pred             CeEEEEEEc----ccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC
Confidence            455554444    6999999877666433    7888888883  2221 1                    223444456


Q ss_pred             CCCCcEE-Ee--CCeEee
Q 030914          127 WPTFPQI-FI--KGEFIG  141 (169)
Q Consensus       127 ~~t~P~v-fi--~g~~iG  141 (169)
                      ...+|.+ +|  +|+.+.
T Consensus       107 v~~~P~~~lid~~G~i~~  124 (154)
T 3ia1_A          107 VLGQPWTFVVDREGKVVA  124 (154)
T ss_dssp             BCSSCEEEEECTTSEEEE
T ss_pred             CCcccEEEEECCCCCEEE
Confidence            7789994 55  576544

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=96.15  E-value=0.03  Score=39.21  Aligned_cols=64  Identities=8%  Similarity=0.078  Sum_probs=39.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC---C-CCeEEEEcCCCHHH-HH------------------HHHHhcCCCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---N-VPISARNILEDPEL-KS------------------AVKAFSHWPT  129 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---~-v~~~~~di~~~~~~-~~------------------~l~~~~g~~t  129 (169)
                      ...++|+..+    +|||+|.+....|++.   + +.+..++++.+++. ++                  .+.+..|...
T Consensus        42 gk~~ll~f~~----~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~  117 (156)
T 1kng_A           42 GKVSLVNVWA----SWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYG  117 (156)
T ss_dssp             TSCEEEEEEC----TTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCS
T ss_pred             CCEEEEEEEc----ccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCc
Confidence            3445444433    6999999888877554   3 77777777655432 22                  2233346778


Q ss_pred             Cc-EEEe--CCeEe
Q 030914          130 FP-QIFI--KGEFI  140 (169)
Q Consensus       130 ~P-~vfi--~g~~i  140 (169)
                      +| .++|  +|+.+
T Consensus       118 ~P~~~~id~~G~i~  131 (156)
T 1kng_A          118 VPETFVVGREGTIV  131 (156)
T ss_dssp             SCEEEEECTTSBEE
T ss_pred             cCeEEEEcCCCCEE
Confidence            99 5566  56654

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=96.13  E-value=0.02  Score=43.09  Aligned_cols=59  Identities=12%  Similarity=0.081  Sum_probs=40.6

Q ss_pred             eEEEeecCC--CCCCCccHHHHHHHHhc-----------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           76 VMLYMKGVP--EFPQCGFSSLAVRVLGA-----------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        76 Vvly~k~~~--~~~~C~~c~~a~~~L~~-----------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      ||.|+...|  .++||+.|+.+.-.|++           -+|.|-.+|++.++++.    ...|-.++|.+.+  +|.
T Consensus        41 vV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la----~~~~I~siPtl~~F~~g~  114 (178)
T 3ga4_A           41 ILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLV----KDLKLQNVPHLVVYPPAE  114 (178)
T ss_dssp             EEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHH----HHTTCCSSCEEEEECCCC
T ss_pred             EEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHH----HHcCCCCCCEEEEEcCCC
Confidence            455555332  23699999988877753           34678889999887754    4457899999854  553

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A*

Probab=96.11  E-value=0.02  Score=43.76  Aligned_cols=68  Identities=12%  Similarity=0.016  Sum_probs=47.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH---hc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA---FS-HWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~---~~-g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||.-     +.|++|.+++-+|...||+|+.+.++... ..+.+..   .+ ...++|.+..||..|.....+...
T Consensus         2 ~~L~y~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~Y   73 (234)
T 1dug_A            2 PILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (234)
T ss_dssp             CEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTC-HHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             cEEEEc-----CCCCchHHHHHHHHHcCCCceEEEeCCCc-hhhHhhhccccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            456665     57999999999999999999998886421 1112222   22 456899998788888776555543

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=96.09  E-value=0.018  Score=42.46  Aligned_cols=19  Identities=21%  Similarity=0.440  Sum_probs=15.7

Q ss_pred             cCCCCCcEEEeCCeEe-ecc
Q 030914          125 SHWPTFPQIFIKGEFI-GGS  143 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~i-GG~  143 (169)
                      .|-..+|.++|||+++ +|.
T Consensus       151 ~gv~gtPt~ving~~~~~g~  170 (193)
T 2rem_A          151 VRPVGTPTIVVNGRYMVTGH  170 (193)
T ss_dssp             HCCSSSSEEEETTTEEECCS
T ss_pred             hCCCCCCeEEECCEEEecCC
Confidence            3778999999999865 775

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=96.07  E-value=0.0088  Score=41.55  Aligned_cols=68  Identities=16%  Similarity=0.176  Sum_probs=41.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh----cC----CCCeEEEEcCCCHH-HHH--------------------HHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY----NVPISARNILEDPE-LKS--------------------AVKA  123 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~----~v~~~~~di~~~~~-~~~--------------------~l~~  123 (169)
                      ...++|+.-+    +|||+|......|.    ++    ++.+..++++.+++ +++                    .+.+
T Consensus        33 gk~vll~F~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (148)
T 3fkf_A           33 NRYLLLNFWA----SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK  108 (148)
T ss_dssp             TSEEEEEEEC----GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             CcEEEEEEEC----CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence            3445554444    59999997776553    33    35566677766542 222                    3444


Q ss_pred             hcCCCCCcEEEe---CCeEeeccH
Q 030914          124 FSHWPTFPQIFI---KGEFIGGSD  144 (169)
Q Consensus       124 ~~g~~t~P~vfi---~g~~iGG~d  144 (169)
                      ..|...+|.+|+   +|+.++...
T Consensus       109 ~~~v~~~P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A          109 QYAILTLPTNILLSPTGKILARDI  132 (148)
T ss_dssp             HTTCCSSSEEEEECTTSBEEEESC
T ss_pred             hcCCCCcCEEEEECCCCeEEEecC
Confidence            557789999765   688777553

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.05  E-value=0.0031  Score=43.59  Aligned_cols=45  Identities=16%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             CCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||++|++....|++.        ++.+..+|++.++.+    .+..+-..+|.+++
T Consensus        35 ~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~   87 (133)
T 2dj3_A           35 PWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT----NDQYKVEGFPTIYF   87 (133)
T ss_dssp             TTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCC----CSSCCCSSSSEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHH----HhhcCCCcCCEEEE
Confidence            7999999988877542        356667777665443    23346788999866

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=96.04  E-value=0.021  Score=40.43  Aligned_cols=41  Identities=5%  Similarity=-0.028  Sum_probs=26.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPEL  117 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~  117 (169)
                      ...++|+.-+    +|||+|.+....|.+       .++.+..++++.+++.
T Consensus        34 gk~vlv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~   81 (165)
T 3or5_A           34 GKAYIVNFFA----TWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPN   81 (165)
T ss_dssp             TCEEEEEEEC----TTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH
Confidence            3445554444    699999987766543       3466777788776554

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=95.96  E-value=0.028  Score=39.17  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=40.6

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc--------CCCCeEEEEcCCCHH--------------------HHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA--------YNVPISARNILEDPE--------------------LKSAVKAF  124 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~--------~~v~~~~~di~~~~~--------------------~~~~l~~~  124 (169)
                      ...|+|+.-+    +|||.|+.....|.+        .++.+..++++.+++                    ....+.+.
T Consensus        28 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (144)
T 1i5g_A           28 GKTVFFYFSA----SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTG  103 (144)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHH
Confidence            3455555544    699999987766543        256667777775432                    12345555


Q ss_pred             cCCCCCcEEEe----CCeEee
Q 030914          125 SHWPTFPQIFI----KGEFIG  141 (169)
Q Consensus       125 ~g~~t~P~vfi----~g~~iG  141 (169)
                      .|...+|.+|+    +|+.+.
T Consensus       104 ~~v~~~P~~~lid~~~G~i~~  124 (144)
T 1i5g_A          104 FDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             TTCCSSSEEEEEETTTCCEEE
T ss_pred             cCCCCCCEEEEEECCCCcEEe
Confidence            57778998754    477664

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=95.89  E-value=0.024  Score=39.68  Aligned_cols=66  Identities=12%  Similarity=0.130  Sum_probs=41.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc--------CCCCeEEEEcCCCHH--------------------HHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA--------YNVPISARNILEDPE--------------------LKSAVKAF  124 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~--------~~v~~~~~di~~~~~--------------------~~~~l~~~  124 (169)
                      ...|+|+.-+    +||+.|+.....|.+        .++.+..++++.+.+                    ....+.+.
T Consensus        28 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (146)
T 1o8x_A           28 GKLVFFYFSA----SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKH  103 (146)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHH
T ss_pred             CCEEEEEEEc----cCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHH
Confidence            3445555443    699999977765533        356677777776532                    22345555


Q ss_pred             cCCCCCcEEEe----CCeEeec
Q 030914          125 SHWPTFPQIFI----KGEFIGG  142 (169)
Q Consensus       125 ~g~~t~P~vfi----~g~~iGG  142 (169)
                      .+...+|.+++    +|+.+.-
T Consensus       104 ~~v~~~Pt~~lid~~~G~i~~~  125 (146)
T 1o8x_A          104 FNVESIPTLIGVDADSGDVVTT  125 (146)
T ss_dssp             TTCCSSSEEEEEETTTCCEEES
T ss_pred             hCCCCCCEEEEEECCCCeEEEe
Confidence            57788998754    4776653

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=95.87  E-value=0.026  Score=41.81  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=23.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHh----cC--CCCeEEEEcC
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLG----AY--NVPISARNIL  112 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~----~~--~v~~~~~di~  112 (169)
                      .|+.|..     ++||+|++....|.    ++  ++.|..+++.
T Consensus        28 ~vv~f~d-----~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           28 EVLEFFA-----YTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEEC-----CCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            3667776     79999998776654    33  3566777775

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=95.76  E-value=0.0078  Score=41.64  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=33.7

Q ss_pred             cHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           91 FSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        91 ~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +|+++...|++.      ++.+..+|++.++++    .+..|-..+|.+++  +|+.+
T Consensus        49 ~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~  102 (123)
T 1oaz_A           49 PCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVA  102 (123)
T ss_dssp             CCCTTHHHHTTC-------CEEEEEETTSCTTT----GGGGTCCBSSEEEEEESSSEE
T ss_pred             CcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHcCCCccCEEEEEECCEEE
Confidence            999998888664      356778888877653    34457788999877  88754

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=95.75  E-value=0.028  Score=46.31  Aligned_cols=50  Identities=12%  Similarity=0.284  Sum_probs=35.8

Q ss_pred             CCCccHHHHHHHHhcC------------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGAY------------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~------------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      |||++|++....+++.            ++.+..+|++.+.++    .+..|...+|.+++  +|+.+
T Consensus        32 ~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l----~~~~~v~~~Pt~~~f~~G~~~   95 (382)
T 2r2j_A           32 DWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDI----AQRYRISKYPTLKLFRNGMMM   95 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHH----HHHTTCCEESEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHH----HHhcCCCcCCEEEEEeCCcEe
Confidence            8999999887766431            267788888877654    44457788898855  78744

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A*

Probab=95.74  E-value=0.007  Score=44.87  Aligned_cols=67  Identities=15%  Similarity=0.126  Sum_probs=47.7

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH---HHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~---~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      .||..     +.|+ |.+++-+|...|++|+.+.++...   ....++++.+...++|.+.+ ||..|.....+...
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 1n2a_A            2 KLFYK-----PGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQY   72 (201)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             eeecC-----CCcc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHH
Confidence            46765     5675 999999999999999887765321   12234556677889999986 67777776555543

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=95.69  E-value=0.042  Score=39.72  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=41.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc--------CCCCeEEEEcCCCHH-HH-------------------HHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA--------YNVPISARNILEDPE-LK-------------------SAVKAF  124 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~--------~~v~~~~~di~~~~~-~~-------------------~~l~~~  124 (169)
                      ...|+|+.-+    .|||.|.+....|.+        .++.+..++++.+.+ ++                   ..+.+.
T Consensus        48 gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  123 (165)
T 3s9f_A           48 GKTVFFYFSA----SWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKK  123 (165)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEEEEC----CcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHH
Confidence            3445555444    699999987765533        256677777776533 11                   345555


Q ss_pred             cCCCCCcEEEe---C-CeEeec
Q 030914          125 SHWPTFPQIFI---K-GEFIGG  142 (169)
Q Consensus       125 ~g~~t~P~vfi---~-g~~iGG  142 (169)
                      .+...+|.+|+   + |+.+.-
T Consensus       124 ~~v~~~Pt~~lid~~~G~iv~~  145 (165)
T 3s9f_A          124 YSVESIPTLIGLNADTGDTVTT  145 (165)
T ss_dssp             TTCCSSSEEEEEETTTCCEEES
T ss_pred             cCCCCCCEEEEEeCCCCEEEec
Confidence            57788998876   3 777753

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*

Probab=95.67  E-value=0.0085  Score=44.42  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHH---HHHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE---LKSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~---~~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~  149 (169)
                      .||..     +.|+ |.+++-+|...|++|+.+.++....   ...++++.+...++|.+. -||..|.....+...
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 2pvq_A            2 KLYYK-----VGAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQY   72 (201)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHH
T ss_pred             eeeeC-----CCcc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHH
Confidence            56765     5676 9999999999999999988864211   123455667778999998 578888776655554

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=95.67  E-value=0.015  Score=40.21  Aligned_cols=66  Identities=15%  Similarity=0.297  Sum_probs=39.0

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCCC------HHHHH-----------------HHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILED------PELKS-----------------AVK  122 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~~------~~~~~-----------------~l~  122 (169)
                      +...++|+..+    +|||+|.+....|.+    ++  +.+..++++..      ..+++                 .+.
T Consensus        28 ~gk~~lv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  103 (148)
T 2b5x_A           28 GEKPTLIHFWS----ISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALT  103 (148)
T ss_dssp             TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHH
T ss_pred             CCCEEEEEEEc----CCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHH
Confidence            34455544443    699999987766543    22  66767776531      11111                 233


Q ss_pred             HhcCCCCCcEEEe---CCeEee
Q 030914          123 AFSHWPTFPQIFI---KGEFIG  141 (169)
Q Consensus       123 ~~~g~~t~P~vfi---~g~~iG  141 (169)
                      +..|...+|.+++   +|+.+.
T Consensus       104 ~~~~v~~~P~~~lid~~G~i~~  125 (148)
T 2b5x_A          104 DAFENEYVPAYYVFDKTGQLRH  125 (148)
T ss_dssp             HHTCCCCSSEEEEECTTCBEEE
T ss_pred             HHhCCCCCCEEEEECCCCcEEE
Confidence            4446778999987   777654

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A*

Probab=95.64  E-value=0.013  Score=44.63  Aligned_cols=68  Identities=16%  Similarity=0.182  Sum_probs=49.0

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH---HHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~---~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.+ .|.+++-+|...||+|+.+.|+...   ...+++.+.+...++|.+.. ||..|.....+...
T Consensus         3 ~~Ly~~-----~~s-~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~eS~aI~~Y   74 (227)
T 3uar_A            3 MKLYYF-----PGA-CSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQY   74 (227)
T ss_dssp             EEEEEC-----TTS-TTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCTTCCSCEEECTTCCEEECHHHHHHH
T ss_pred             EEEecC-----CCc-chHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCCCCCCCeEEECCCCEEecHHHHHHH
Confidence            668866     444 4999999999999999987775322   12235667777889999998 57677776555543

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=95.61  E-value=0.08  Score=39.40  Aligned_cols=78  Identities=15%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             cccCCcccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHH----------HHhcCCCCeEEEEcCCCHHHHHHHH-
Q 030914           55 KVDASGLSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVR----------VLGAYNVPISARNILEDPELKSAVK-  122 (169)
Q Consensus        55 ~~pt~~~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~----------~L~~~~v~~~~~di~~~~~~~~~l~-  122 (169)
                      +|.+..   .+.++..... .+|+|....    +||+.|+....          .++. ++-+..+|++..+++...+. 
T Consensus        23 ~W~~~~---~ea~~~A~~~~KpVlvdF~A----~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~   94 (173)
T 3ira_A           23 DWYPWG---EEAFEKARKENKPVFLSIGY----STCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMT   94 (173)
T ss_dssp             CCBCSS---HHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHH
T ss_pred             CCCCcC---HHHHHHHHHhCCCEEEeccc----chhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHH
Confidence            465432   3445555444 456655543    79999998544          2222 34456778888777655442 


Q ss_pred             ---HhcCCCCCcEEE-e--CCeEe
Q 030914          123 ---AFSHWPTFPQIF-I--KGEFI  140 (169)
Q Consensus       123 ---~~~g~~t~P~vf-i--~g~~i  140 (169)
                         ...|...+|.++ +  +|+.+
T Consensus        95 ~~q~~~gv~g~Pt~v~l~~dG~~v  118 (173)
T 3ira_A           95 VCQIILGRGGWPLNIIMTPGKKPF  118 (173)
T ss_dssp             HHHHHHSCCCSSEEEEECTTSCEE
T ss_pred             HHHHHcCCCCCcceeeECCCCCce
Confidence               234777888764 4  57765

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=95.59  E-value=0.046  Score=40.91  Aligned_cols=68  Identities=13%  Similarity=0.200  Sum_probs=49.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      +.||..     | .+.|.++.-+|.+.||+|+.+.|+-  .+....++.+.+...++|.+.++ |..|.....+...
T Consensus         4 ~kLY~~-----p-~s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~Y   74 (215)
T 4gf0_A            4 LTLYFT-----P-GTISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINPKGRVPALRLEDDTILTETGALLDY   74 (215)
T ss_dssp             EEEEEC-----T-TSTHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEECTTSCEEECHHHHHHH
T ss_pred             EEEEeC-----C-CCcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCCCCCcceEEecCCcEEechHHHHHH
Confidence            567865     3 3457888899999999999887753  34445567778878899999987 6667665544443

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.57  E-value=0.029  Score=39.28  Aligned_cols=63  Identities=19%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCH--HHHH-----------------HHHHhcC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDP--ELKS-----------------AVKAFSH  126 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~--~~~~-----------------~l~~~~g  126 (169)
                      ...++|+.-+    +|||+|......|.+       .++.+..++++.+.  .++.                 .+.+..|
T Consensus        28 gk~~lv~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (153)
T 2l5o_A           28 GKVTLINFWF----PSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFG  103 (153)
T ss_dssp             TCEEEEEEEC----TTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHT
T ss_pred             CCEEEEEEEC----CCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcC
Confidence            3444444433    699999977665533       24555555543221  1111                 2333346


Q ss_pred             CCCCcEEEe---CCeE
Q 030914          127 WPTFPQIFI---KGEF  139 (169)
Q Consensus       127 ~~t~P~vfi---~g~~  139 (169)
                      ...+|.+|+   +|+.
T Consensus       104 i~~~P~~~lid~~G~i  119 (153)
T 2l5o_A          104 TQVYPTSVLIGKKGEI  119 (153)
T ss_dssp             CCSSSEEEEECSSSCC
T ss_pred             CCccCeEEEECCCCcE
Confidence            678999877   6764

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=95.52  E-value=0.018  Score=40.83  Aligned_cols=23  Identities=9%  Similarity=0.195  Sum_probs=15.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHh
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLG  100 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~  100 (169)
                      ..++|+..+    +|||+|+.....|.
T Consensus        39 k~vlv~F~a----~~C~~C~~~~~~l~   61 (164)
T 2h30_A           39 KPTLIKFWA----SWCPLCLSELGQAE   61 (164)
T ss_dssp             SCEEEEECC----TTCHHHHHHHHHHH
T ss_pred             CEEEEEEEC----CCCHHHHHHHHHHH
Confidence            455555444    69999998776553

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=95.46  E-value=0.013  Score=41.11  Aligned_cols=60  Identities=10%  Similarity=0.204  Sum_probs=37.9

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHh-cCC-------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEee
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLG-AYN-------VPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIG  141 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~-~~~-------v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iG  141 (169)
                      .+|.|..     +||++|+++...+. ...       +++..+||+.+..  ..+....+-..+|.+.  -+|+-|+
T Consensus        21 ~LV~F~A-----~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~--~~la~~~~V~g~PT~i~f~~G~ev~   90 (116)
T 3dml_A           21 RLLMFEQ-----PGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP--PGLELARPVTFTPTFVLMAGDVESG   90 (116)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC--TTCBCSSCCCSSSEEEEEETTEEEE
T ss_pred             EEEEEEC-----CCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc--hhHHHHCCCCCCCEEEEEECCEEEe
Confidence            3555665     89999999877553 332       5678889987632  1122223456778874  4887665

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*

Probab=95.45  E-value=0.011  Score=43.80  Aligned_cols=68  Identities=18%  Similarity=0.113  Sum_probs=47.9

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH--HH-HHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP--EL-KSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNMH  150 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~--~~-~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~~  150 (169)
                      .||..     +.|+ |.+++-+|...|++|+.+.|+...  .. ..++++.+...++|.+. .||..|.....+....
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   73 (203)
T 1pmt_A            2 KLYYT-----PGSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYL   73 (203)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeecc-----CCcc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHH
Confidence            56765     5675 999999999999999887665321  11 23455667778999998 5777777765555543

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=95.35  E-value=0.044  Score=46.66  Aligned_cols=48  Identities=21%  Similarity=0.376  Sum_probs=35.8

Q ss_pred             CCCccHHHHHHHHhc----C---CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           87 PQCGFSSLAVRVLGA----Y---NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~---~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      |||++|++....+.+    +   ++.+..+|++.++++    .+..|-..+|.+++  +|+
T Consensus        41 ~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~g~   97 (504)
T 2b5e_A           41 PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDL----CMEHNIPGFPSLKIFKNSD   97 (504)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTC
T ss_pred             CCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHHH----HHhcCCCcCCEEEEEeCCc
Confidence            899999998876643    2   478889999888654    44457788998855  676

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=95.32  E-value=0.045  Score=41.35  Aligned_cols=70  Identities=10%  Similarity=0.125  Sum_probs=43.2

Q ss_pred             cHHHHHHHHh--h-cCCeEEEeecCC-CCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCC
Q 030914           62 SLKEVVEQDV--K-ENPVMLYMKGVP-EFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPT  129 (169)
Q Consensus        62 ~~~~~i~~~~--~-~~~Vvly~k~~~-~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t  129 (169)
                      +..+.+++.+  + .++|+|..-... ..|||++|+.....+.+.        .|.+..+|++.++++.    +..|-..
T Consensus         6 ~~~~~l~~~~~~~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~----~~~~v~~   81 (229)
T 2ywm_A            6 DVRMQLKELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEET----EKYGVDR   81 (229)
T ss_dssp             HHHHHHHHHHHHHCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHH----HHTTCCB
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHH----HHcCCCc
Confidence            3455566655  1 345544332221 247888888877776654        3777788888776653    4446778


Q ss_pred             CcEEEe
Q 030914          130 FPQIFI  135 (169)
Q Consensus       130 ~P~vfi  135 (169)
                      +|.+.+
T Consensus        82 ~Ptl~~   87 (229)
T 2ywm_A           82 VPTIVI   87 (229)
T ss_dssp             SSEEEE
T ss_pred             CcEEEE
Confidence            898855

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=95.31  E-value=0.074  Score=39.17  Aligned_cols=19  Identities=11%  Similarity=0.289  Sum_probs=15.4

Q ss_pred             cCCCCCcEEEeCCeE-eecc
Q 030914          125 SHWPTFPQIFIKGEF-IGGS  143 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~-iGG~  143 (169)
                      .|-..+|.++|||++ +.|.
T Consensus       146 ~gv~gtPt~ving~~~~~g~  165 (195)
T 2znm_A          146 YRIDSTPTVIVGGKYRVIFN  165 (195)
T ss_dssp             TTCCSSSEEEETTTEEECCC
T ss_pred             cCCCCCCeEEECCEEEEcCC
Confidence            477899999999996 7663

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*

Probab=95.21  E-value=0.01  Score=44.03  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=47.2

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH---HHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP---ELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~---~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      .||..     +.|+ |.+++-+|...||+|+.+.++...   ....++++.+...++|.+.+ ||..|.....+...
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   72 (203)
T 2dsa_A            2 KLYYS-----PGAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQY   72 (203)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             eeeec-----CCcc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHH
Confidence            56765     5675 999999999999999887775321   11234556677789999987 67777776555543

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=95.08  E-value=0.13  Score=37.32  Aligned_cols=94  Identities=12%  Similarity=0.012  Sum_probs=52.1

Q ss_pred             ccHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHH----------HHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCC
Q 030914           61 LSLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAV----------RVLGAYNVPISARNILEDPELKSAVKAFSHWPT  129 (169)
Q Consensus        61 ~~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~----------~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t  129 (169)
                      .++++.+...-..+ +|+|+..+    +||+.|+...          ++|++ +.-+..+|++ +++- ..+.+..+...
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a----~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~~-~~~~-~~l~~~y~v~~  101 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQN----VQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYHD-SEEG-QRYIQFYKLGD  101 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEEC----SCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEESS-SHHH-HHHHHHHTCCS
T ss_pred             cCHHHHHHHHHHcCCeEEEEEEC----CCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEecC-CHhH-HHHHHHcCCCC
Confidence            36777777766544 57777765    6999998763          44434 2222344553 2333 34555556778


Q ss_pred             CcEE-EeC---Ce---EeeccHHHHHHHhcccHHHHHhcccc
Q 030914          130 FPQI-FIK---GE---FIGGSDIILNMHQSGELKEKLKGIAS  164 (169)
Q Consensus       130 ~P~v-fi~---g~---~iGG~d~l~~~~~~g~L~~~L~~~~~  164 (169)
                      +|.+ |++   |+   -+||. +..++.  ..|++.++.++.
T Consensus       102 ~P~~~fld~~~G~~l~~~~g~-~~~~fl--~~L~~~l~~~~~  140 (153)
T 2dlx_A          102 FPYVSILDPRTGQKLVEWHQL-DVSSFL--DQVTGFLGEHGQ  140 (153)
T ss_dssp             SSEEEEECTTTCCCCEEESSC-CHHHHH--HHHHHHHHHTCS
T ss_pred             CCEEEEEeCCCCcEeeecCCC-CHHHHH--HHHHHHHHhcCC
Confidence            8987 454   42   24553 222221  335666655543

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=94.07  E-value=0.0038  Score=43.37  Aligned_cols=36  Identities=11%  Similarity=0.033  Sum_probs=21.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCC
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILED  114 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~  114 (169)
                      .++|+.-+    +|||+|......|.+.         ++.+..++++.+
T Consensus        28 ~vll~F~a----~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~   72 (143)
T 2lus_A           28 IIGFYFSA----HWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRS   72 (143)
Confidence            55554443    6999999877766543         344555555543

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=94.99  E-value=0.079  Score=42.41  Aligned_cols=68  Identities=16%  Similarity=0.244  Sum_probs=41.6

Q ss_pred             HHHHHHh-hcC-CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-
Q 030914           65 EVVEQDV-KEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI-  135 (169)
Q Consensus        65 ~~i~~~~-~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-  135 (169)
                      +.+++.+ +.+ .|+|+...    +||++|++....|.+.      .+.+..+|++.+..  ..+.+..|...+|.+++ 
T Consensus        25 ~~f~~~i~~~~~~vlV~F~A----~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~--~~l~~~~~I~~~Pt~~~~   98 (298)
T 3ed3_A           25 KSFDKAIHNTNYTSLVEFYA----PWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN--KALCAKYDVNGFPTLMVF   98 (298)
T ss_dssp             HHHHHHHTSSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTT--HHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHHhCCCeEEEEEEC----CCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccC--HHHHHhCCCCccceEEEE
Confidence            3445555 333 35554433    7999999887766432      26677788874221  23444557889999865 


Q ss_pred             -CCe
Q 030914          136 -KGE  138 (169)
Q Consensus       136 -~g~  138 (169)
                       +|+
T Consensus        99 ~~g~  102 (298)
T 3ed3_A           99 RPPK  102 (298)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence             664

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=94.99  E-value=0.0094  Score=42.79  Aligned_cols=49  Identities=8%  Similarity=0.181  Sum_probs=27.5

Q ss_pred             CCccHHHHHHHHhc----C-CCC--eEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           88 QCGFSSLAVRVLGA----Y-NVP--ISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        88 ~C~~c~~a~~~L~~----~-~v~--~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      +|+.|+...-.|++    + ++.  +-.+|++.+++    +....|-.++|.+++  +|+.+
T Consensus        47 ~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~~----la~~~~V~~iPT~~~fk~G~~v  104 (142)
T 2es7_A           47 RTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEA----IGDRFNVRRFPATLVFTDGKLR  104 (142)
T ss_dssp             C----CCHHHHHHHHHHTCTTSCCEEEEECHHHHHH----HHHTTTCCSSSEEEEESCC---
T ss_pred             CCccHHHHHHHHHHHHHHhcccceeEEEEECCCCHH----HHHhcCCCcCCeEEEEeCCEEE
Confidence            49999987766643    2 466  66777754443    445557889998865  77644

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.98  E-value=0.026  Score=39.02  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=39.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHH-HHHH--------------------HHHhc
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPE-LKSA--------------------VKAFS  125 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~-~~~~--------------------l~~~~  125 (169)
                      ..++|+.-+    +||++|......|.+       .++.+..++++.+++ +++.                    +.+..
T Consensus        32 k~vll~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  107 (148)
T 3hcz_A           32 KYTILFFWD----SQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITY  107 (148)
T ss_dssp             SEEEEEEEC----GGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHH
T ss_pred             CEEEEEEEC----CCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhc
Confidence            445554443    599999866654433       357777788875543 3333                    33334


Q ss_pred             CCCCCcEEEe---CCeEee
Q 030914          126 HWPTFPQIFI---KGEFIG  141 (169)
Q Consensus       126 g~~t~P~vfi---~g~~iG  141 (169)
                      |...+|.+|+   +|+.+.
T Consensus       108 ~i~~~P~~~lid~~G~i~~  126 (148)
T 3hcz_A          108 DIYATPVLYVLDKNKVIIA  126 (148)
T ss_dssp             CCCSSCEEEEECTTCBEEE
T ss_pred             CcCCCCEEEEECCCCcEEE
Confidence            5678999876   677654

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}

Probab=94.93  E-value=0.042  Score=42.49  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=51.8

Q ss_pred             CCeEEEeecCCCCC-CCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHH-H--HhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFP-QCGFSSLAVRVLGAYNVPISARNILEDPELKSAV-K--AFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~-~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l-~--~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.||.-     + .++.|.+++-+|...||+|+.+.|+.+.....+. +  ..+-. ++|.+..||..+.....+...
T Consensus        20 m~~~L~y~-----~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~-kVPvL~d~g~~l~ES~AI~~Y   93 (252)
T 3h1n_A           20 MAYDLWYW-----DGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPF-APPYLVADGMTIAQTANILLF   93 (252)
T ss_dssp             GCEEEECC-----SSSCTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCS-SSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEEeC-----CCCCcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCC-CCCEEEECCEEeecHHHHHHH
Confidence            45778876     5 3899999999999999999999887433222333 3  45566 999999999888776555443

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5

Probab=94.93  E-value=0.019  Score=42.49  Aligned_cols=67  Identities=15%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH--HH-HHHHHHhcCCCCCcEEE-eCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP--EL-KSAVKAFSHWPTFPQIF-IKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~--~~-~~~l~~~~g~~t~P~vf-i~g~~iGG~d~l~~~  149 (169)
                      .||..     + +++|.+++-+|...|++|+.+.++...  .. ..++++.+...++|.+. -||..|.....+...
T Consensus         2 ~Ly~~-----~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 1f2e_A            2 KLFIS-----P-GACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLY   72 (201)
T ss_dssp             EEEEC-----T-TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             eeeec-----C-CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCcCCCCceEEecCCcEeeHHHHHHHH
Confidence            46765     3 578999999999999999887765321  11 13455677788999998 477777776555543

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=94.78  E-value=0.078  Score=37.06  Aligned_cols=96  Identities=13%  Similarity=0.113  Sum_probs=57.1

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcC---Ce-EEEeecCCCCCCCc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKEN---PV-MLYMKGVPEFPQCG   90 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~---~V-vly~k~~~~~~~C~   90 (169)
                      .|.|++++++.++|.++|++|.. |+..++.++                 +.+.+++...   ++ -++.+.      . 
T Consensus        12 ~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~-----------------~eL~~~l~~~g~~~~~~l~n~~------~-   67 (121)
T 3rdw_A           12 NPRCSKSRETLALVEQQGITPQVVLYLETPPSV-----------------DKLKELLQQLGFSDARQLMRTK------E-   67 (121)
T ss_dssp             CTTCHHHHHHHHHHHTTTCCCEEECTTTSCCCH-----------------HHHHHHHHHTTCSSGGGGBCTT------S-
T ss_pred             CCCCHHHHHHHHHHHHcCCCcEEEeeccCCCcH-----------------HHHHHHHHhcCCcCHHHHhcCC------C-
Confidence            47899999999999999999988 999886532                 3333333322   22 123221      0 


Q ss_pred             cHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           91 FSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        91 ~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                            ...++.++...  ++ .+.++.+.|.+...--.-|.|..+|+.+-|++
T Consensus        68 ------~~~k~l~l~~~--~l-s~~~~~~lm~~~p~LikRPIv~~~~~~~vG~~  112 (121)
T 3rdw_A           68 ------DLYKTLNLDDR--GL-TQDQLLQAMADNPKLIERPIVVTQGKARIGRP  112 (121)
T ss_dssp             ------HHHHHTTTTCT--TC-CHHHHHHHHHHCGGGBCCCEEEETTEEEECSS
T ss_pred             ------hhhhhcCcccc--cC-CHHHHHHHHHhCccceeCCEEEECCEEEEECC
Confidence                  23344444321  11 23445555544333335699999998877765

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=94.72  E-value=0.082  Score=44.55  Aligned_cols=50  Identities=20%  Similarity=0.279  Sum_probs=36.6

Q ss_pred             CCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           87 PQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      |||++|++....+.+.    +  +.+..+|++.++++.    +..|-..+|.+++  +|+.+
T Consensus        31 ~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~----~~~~v~~~Ptl~~~~~g~~~   88 (481)
T 3f8u_A           31 PWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTNTC----NKYGVSGYPTLKIFRDGEEA   88 (481)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHHHH----HHTTCCEESEEEEEETTEEE
T ss_pred             CCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHHHH----HhcCCCCCCEEEEEeCCcee
Confidence            8999999888776433    2  788899998877654    4446788898744  78543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=94.71  E-value=0.12  Score=35.98  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=38.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCHH-HHH-----------------HHHHhcCCC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDPE-LKS-----------------AVKAFSHWP  128 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~~-~~~-----------------~l~~~~g~~  128 (169)
                      ..++|+.-+    +|||+|......|.       ..++.+..++++.+++ ++.                 .+.+..|..
T Consensus        29 k~vll~f~~----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~  104 (152)
T 3gl3_A           29 SVVYLDFWA----SWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGVK  104 (152)
T ss_dssp             SEEEEEEEC----TTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTCC
T ss_pred             CEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCCC
Confidence            345554444    69999997765553       3356777778876543 222                 234445778


Q ss_pred             CCcEE-Ee--CCeEe
Q 030914          129 TFPQI-FI--KGEFI  140 (169)
Q Consensus       129 t~P~v-fi--~g~~i  140 (169)
                      .+|.+ +|  +|+.+
T Consensus       105 ~~P~~~lid~~G~i~  119 (152)
T 3gl3_A          105 GMPTSFLIDRNGKVL  119 (152)
T ss_dssp             SSSEEEEECTTSBEE
T ss_pred             CCCeEEEECCCCCEE
Confidence            89995 45  56544

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=94.67  E-value=0.17  Score=35.77  Aligned_cols=65  Identities=12%  Similarity=0.144  Sum_probs=40.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCHHHHHH-------------------HHHhcC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDPELKSA-------------------VKAFSH  126 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~~~~~~-------------------l~~~~g  126 (169)
                      ...++|+.-.    .|||.|......|.       ..++.+..++++.+.+....                   +.+..|
T Consensus        35 gk~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (152)
T 2lrt_A           35 GKVVLIDFTV----YNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN  110 (152)
T ss_dssp             GSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred             CCEEEEEEEc----CCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence            3455555444    59999997655442       34577777888766543221                   444456


Q ss_pred             CCCCcEEEe---CCeEee
Q 030914          127 WPTFPQIFI---KGEFIG  141 (169)
Q Consensus       127 ~~t~P~vfi---~g~~iG  141 (169)
                      ...+|.+|+   +|+.+.
T Consensus       111 v~~~P~~~lid~~G~i~~  128 (152)
T 2lrt_A          111 VTNLPSVFLVNRNNELSA  128 (152)
T ss_dssp             CCSCSEEEEEETTTEEEE
T ss_pred             cccCceEEEECCCCeEEE
Confidence            678898866   677665

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=94.65  E-value=0.041  Score=37.66  Aligned_cols=71  Identities=14%  Similarity=0.202  Sum_probs=44.7

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCe-EEEeecC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPV-MLYMKGV   83 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~V-vly~k~~   83 (169)
                      +++|.|     |.|+|+.++..+|.+.|++|.. ++..+++              .....+.+.+......| .+|..| 
T Consensus        19 v~vy~~-----~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~--------------~~~~~~~l~~~~g~~tvP~vfi~g-   78 (114)
T 3h8q_A           19 VVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDD--------------GARVQEVLSEITNQKTVPNIFVNK-   78 (114)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTSTT--------------HHHHHHHHHHHHSCCSSCEEEETT-
T ss_pred             EEEEEc-----CCCCcHHHHHHHHHHcCCCcEEEEecCCCC--------------hHHHHHHHHHHhCCCccCEEEECC-
Confidence            456776     8999999999999999999977 7765321              12333445444444444 456655 


Q ss_pred             CCCCCCccHHHHHHHH
Q 030914           84 PEFPQCGFSSLAVRVL   99 (169)
Q Consensus        84 ~~~~~C~~c~~a~~~L   99 (169)
                         ..-+-|..+.++.
T Consensus        79 ---~~igG~d~l~~l~   91 (114)
T 3h8q_A           79 ---VHVGGCDQTFQAY   91 (114)
T ss_dssp             ---EEEESHHHHHHHH
T ss_pred             ---EEEeCHHHHHHHH
Confidence               2344566555544

>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}

Probab=94.64  E-value=0.088  Score=43.45  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             hhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC----eEEEEcC-----------------------CCHHHHHHHHH
Q 030914           71 VKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP----ISARNIL-----------------------EDPELKSAVKA  123 (169)
Q Consensus        71 ~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~----~~~~di~-----------------------~~~~~~~~l~~  123 (169)
                      ...++..||..     ..||||.++.-+|..+|++    +..++..                       ..+...+++.+
T Consensus        73 ~e~gry~Ly~s-----~~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~  147 (352)
T 3ppu_A           73 PEKGRYHLYVS-----YACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLK  147 (352)
T ss_dssp             CCTTSEEEEEC-----SSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHH
T ss_pred             CCCCcEEEEEe-----CCCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHH
Confidence            34568999987     6899999999999999986    2223221                       11234566666


Q ss_pred             hcCC----CCCcEEEe--CC-eEeeccHHHHHHH
Q 030914          124 FSHW----PTFPQIFI--KG-EFIGGSDIILNMH  150 (169)
Q Consensus       124 ~~g~----~t~P~vfi--~g-~~iGG~d~l~~~~  150 (169)
                      ....    .++|.+..  +| ..+.....+..+.
T Consensus       148 ~nP~g~gr~kVPvL~d~~~g~~vl~ES~aI~~YL  181 (352)
T 3ppu_A          148 VKPDYDGRFTVPVLWDKHTGTIVNNESSEIIRMF  181 (352)
T ss_dssp             HCTTCCSCCCSCEEEETTTTEEEECCHHHHHHHH
T ss_pred             hCCCCCCCeeeeEEEEeCCCCEEEecHHHHHHHH
Confidence            6533    39999998  24 4555555555443

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=94.62  E-value=0.23  Score=34.59  Aligned_cols=67  Identities=9%  Similarity=0.086  Sum_probs=40.7

Q ss_pred             cCCeEEEeecCCCCCCCcc--HHHHHHHHh--------cCCCCeEEEEcCCCH-HHHH--------------------HH
Q 030914           73 ENPVMLYMKGVPEFPQCGF--SSLAVRVLG--------AYNVPISARNILEDP-ELKS--------------------AV  121 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~--c~~a~~~L~--------~~~v~~~~~di~~~~-~~~~--------------------~l  121 (169)
                      ...|+|+.-.    .||+.  |......|.        ..++.+..++++.++ .+++                    .+
T Consensus        33 gk~vll~F~a----~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  108 (150)
T 3fw2_A           33 QKSLLINFWA----SWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV  108 (150)
T ss_dssp             TSEEEEEEEC----TTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred             CCEEEEEEEe----CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence            3455655544    59999  997665442        235667777777664 3333                    23


Q ss_pred             HHhcCCCCCcEEEe---CCeEeecc
Q 030914          122 KAFSHWPTFPQIFI---KGEFIGGS  143 (169)
Q Consensus       122 ~~~~g~~t~P~vfi---~g~~iGG~  143 (169)
                      .+..|...+|.+|+   +|+.+.-.
T Consensus       109 ~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A          109 AKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHcCCCccCeEEEECCCCEEEEcc
Confidence            33446678898765   57766544

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=94.57  E-value=0.062  Score=41.21  Aligned_cols=56  Identities=20%  Similarity=0.209  Sum_probs=34.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ..++|+...    +||++|++....+++.         ++.+..+|++.+..  ..+.+..+-..+|.+++
T Consensus        31 ~~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~~l~~~~~v~~~Pt~~~   95 (244)
T 3q6o_A           31 SAWAVEFFA----SWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN--SAVCRDFNIPGFPTVRF   95 (244)
T ss_dssp             SEEEEEEEC----TTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT--HHHHHHTTCCSSSEEEE
T ss_pred             CeEEEEEEC----CcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh--HHHHHHcCCCccCEEEE
Confidence            344444443    7999999887766432         46677788843221  23444557788999744

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5

Probab=94.53  E-value=0.017  Score=45.87  Aligned_cols=62  Identities=11%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCC--H-HHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILED--P-ELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~--~-~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.|++|.+++-+|++.||+|+.+.|+..  + ...... ..+ ...++|.+..||..|.....+...
T Consensus         8 ~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~ln~P~gkVPvL~d~g~~l~ES~aI~~Y   73 (280)
T 1b8x_A            8 KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKF-ELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (280)
T ss_dssp             SSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTT-TTCCSSCCSSBEECSSCEECSHHHHHHH
T ss_pred             CCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhh-ccCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            4699999999999999999988877632  1 111111 222 356899998777777776555543

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=94.45  E-value=0.13  Score=42.18  Aligned_cols=50  Identities=18%  Similarity=0.098  Sum_probs=33.4

Q ss_pred             CCCccHHHHH-------------HHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           87 PQCGFSSLAV-------------RVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        87 ~~C~~c~~a~-------------~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      |||++|....             +.+...+|.+-.+|++.++++.+    ..|-..+|.+  |-+|+.+
T Consensus        40 pWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~----~~~V~~~PTl~~f~~G~~~  104 (367)
T 3us3_A           40 PPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAK----KLGLTEEDSIYVFKEDEVI  104 (367)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHHHHH----HHTCCSTTEEEEEETTEEE
T ss_pred             CCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHHHHH----HcCCCcCceEEEEECCcEE
Confidence            8999974433             22333468888999988876543    3467788976  4588643

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=94.41  E-value=0.14  Score=36.41  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=26.9

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCCCH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILEDP  115 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~~~  115 (169)
                      +...++|+..+    +|||+|.+....|+   +.++.+..++++.++
T Consensus        50 ~gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~~~   92 (168)
T 2b1k_A           50 QGKPVLLNVWA----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDR   92 (168)
T ss_dssp             CSSCEEEEEEC----TTCHHHHHHHHHHHHHHHTTCCEEEEEESCCH
T ss_pred             CCCEEEEEEEC----CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCh
Confidence            44556655444    69999998766553   337888888876543

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=94.31  E-value=0.017  Score=44.76  Aligned_cols=69  Identities=12%  Similarity=0.052  Sum_probs=45.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHHHHhc-CCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILED--PELKSAVKAFS-HWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l~~~~-g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||.-     +.||+|.+++-+|...|++|+.+.++-.  ++......... ...++|.+..||..+.....+...
T Consensus         3 ~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~VPvL~d~~~~l~eS~aI~~y   74 (254)
T 1bg5_A            3 PILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   74 (254)
T ss_dssp             CBCCSC-----SCSTTTHHHHHHHHHTTCCCBCCCCCGGGTHHHHHHTTTTCCSSCCSSBCCCSSCCCBSHHHHHHH
T ss_pred             cEEEEe-----CCcchhHHHHHHHHHcCCCceEEeeCCCCHHHHhhcccccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            456655     5799999999999999999998877632  22111110122 456899998777666665554443

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=94.22  E-value=0.12  Score=36.03  Aligned_cols=64  Identities=13%  Similarity=0.114  Sum_probs=37.0

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc----C---CCCeEEEEcCCC-HH-HHHH-----------------HHHhcC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y---NVPISARNILED-PE-LKSA-----------------VKAFSH  126 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~---~v~~~~~di~~~-~~-~~~~-----------------l~~~~g  126 (169)
                      ...++|+.-+    +||++|.+....|.+    +   ++.+..++++.+ ++ +++.                 +.+..|
T Consensus        28 gk~vll~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (154)
T 3kcm_A           28 GQVVIVNFWA----TWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG  103 (154)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT
T ss_pred             CCEEEEEEEC----CCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC
Confidence            3445554444    699999987665533    2   455666777664 22 2221                 334456


Q ss_pred             CCCCc-EEEe--CCeEe
Q 030914          127 WPTFP-QIFI--KGEFI  140 (169)
Q Consensus       127 ~~t~P-~vfi--~g~~i  140 (169)
                      ...+| .++|  +|+.+
T Consensus       104 v~~~P~~~lid~~G~i~  120 (154)
T 3kcm_A          104 TTGVPETFVIDRHGVIL  120 (154)
T ss_dssp             CCSBCEEEEECTTSBEE
T ss_pred             CCCCCeEEEECCCCcEE
Confidence            77899 5555  46543

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.09  E-value=0.01  Score=40.79  Aligned_cols=40  Identities=13%  Similarity=0.121  Sum_probs=31.0

Q ss_pred             hhhhccCCCCCCCCcchH------HHHHHHHhCCCCccc-ccCCCccccCCC
Q 030914            6 SNLIFKGIASYPSARSSR------IVSGSLYHNGMKYST-DVPNDPDTHEDF   50 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~------~~~~~l~~~g~~~~s-~vl~d~~~~~~~   50 (169)
                      +++|.+     |.|+++.      ++.++|..+|++|.. ||..|++.++.+
T Consensus        10 V~vy~~-----~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l   56 (111)
T 2ct6_A           10 IRVFIA-----SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWM   56 (111)
T ss_dssp             EEEEEC-----SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHH
T ss_pred             EEEEEc-----CCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHH
Confidence            456654     7888888      899999999999988 998876544333

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=94.06  E-value=0.16  Score=36.60  Aligned_cols=16  Identities=13%  Similarity=0.468  Sum_probs=13.7

Q ss_pred             cCCCCCcEEEeCCeEe
Q 030914          125 SHWPTFPQIFIKGEFI  140 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~i  140 (169)
                      .|-..+|.+||||+++
T Consensus       146 ~gv~gTPtfiINGky~  161 (184)
T 4dvc_A          146 SGLTGVPAVVVNNRYL  161 (184)
T ss_dssp             HTCCSSSEEEETTTEE
T ss_pred             cCCCcCCEEEECCEEe
Confidence            3778999999999965

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=94.01  E-value=0.23  Score=35.85  Aligned_cols=46  Identities=15%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCC------CeEEEEcCC-CHHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNV------PISARNILE-DPELKSAV  121 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v------~~~~~di~~-~~~~~~~l  121 (169)
                      +...++|+..+    +|||+|......|       ...++      .+..++++. +++....+
T Consensus        58 ~gk~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~  117 (183)
T 3lwa_A           58 ENQVVILNAWG----QWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDF  117 (183)
T ss_dssp             TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHH
T ss_pred             CCCEEEEEEEC----CcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHH
Confidence            33455555444    6999999765544       34567      778888877 45443333

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=93.91  E-value=0.15  Score=39.40  Aligned_cols=73  Identities=14%  Similarity=0.242  Sum_probs=48.4

Q ss_pred             ccHHHHHHHHhhc--CCeE-EEeecCCCCCC--CccHHHHHHHHhcCC-----------CCeEEEEcCCCHHHHHHHHHh
Q 030914           61 LSLKEVVEQDVKE--NPVM-LYMKGVPEFPQ--CGFSSLAVRVLGAYN-----------VPISARNILEDPELKSAVKAF  124 (169)
Q Consensus        61 ~~~~~~i~~~~~~--~~Vv-ly~k~~~~~~~--C~~c~~a~~~L~~~~-----------v~~~~~di~~~~~~~~~l~~~  124 (169)
                      .+.++.++++...  .+|+ .|..     ++  |++|++...+|++..           |.+..+|++.++++.    +.
T Consensus        11 ~~~~~ql~~~~~~~~~pv~v~~~~-----~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~----~~   81 (243)
T 2hls_A           11 EDFRRELRETLAEMVNPVEVHVFL-----SKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKF----SE   81 (243)
T ss_dssp             HHHHHHHHHHHTTCCSCEEEEEEE-----CSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHH----HH
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEEe-----CCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHH----Hh
Confidence            4566777777754  4544 4444     57  999999998886521           777788888776543    34


Q ss_pred             cCCCCCcEEEe-CC--eEeec
Q 030914          125 SHWPTFPQIFI-KG--EFIGG  142 (169)
Q Consensus       125 ~g~~t~P~vfi-~g--~~iGG  142 (169)
                      .|-..+|.+.+ +|  ++.|.
T Consensus        82 ~gv~~~Pt~~i~~g~~~~~G~  102 (243)
T 2hls_A           82 FKVERVPTVAFLGGEVRWTGI  102 (243)
T ss_dssp             TTCCSSSEEEETTTTEEEESC
T ss_pred             cCCCcCCEEEEECCceeEcCC
Confidence            46668999866 44  45553

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=93.90  E-value=0.091  Score=37.76  Aligned_cols=31  Identities=16%  Similarity=0.226  Sum_probs=27.6

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+
T Consensus         9 ~p~C~~crkak~~L~~~gi~~~~idi~~~~~~   40 (141)
T 1s3c_A            9 NPASGTSRNTLEMIRNSGTEPTIILYLENPPS   40 (141)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCEEECTTTSCCC
T ss_pred             CCCChHHHHHHHHHHHcCCCEEEEECCCCCcc
Confidence            48999999999999999999988 99988654

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=93.90  E-value=0.15  Score=35.80  Aligned_cols=35  Identities=11%  Similarity=-0.035  Sum_probs=21.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHH-HHHHH----hc---CCCCeEEEEc
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSL-AVRVL----GA---YNVPISARNI  111 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~-a~~~L----~~---~~v~~~~~di  111 (169)
                      ...|+|+.-.    .|||.|.. +...|    ++   .++.+..+++
T Consensus        30 gk~vlv~F~a----~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           30 GKVVVVEVFQ----MLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             TSEEEEEEEC----TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCEEEEEEEc----CCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            4455655444    59999998 55544    32   2456666665

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=92.61  E-value=0.013  Score=41.59  Aligned_cols=29  Identities=10%  Similarity=0.140  Sum_probs=18.6

Q ss_pred             CCCccHHHHHHHHhc---------CCCCeEEEEcCCCH
Q 030914           87 PQCGFSSLAVRVLGA---------YNVPISARNILEDP  115 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~---------~~v~~~~~di~~~~  115 (169)
                      +|||.|......|.+         .++.+..++++.++
T Consensus        43 ~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~   80 (159)
T 2ls5_A           43 SWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPL   80 (159)
Confidence            699999987766655         23445555555443

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=93.48  E-value=0.24  Score=40.08  Aligned_cols=64  Identities=13%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             HHHHHHhhcCC-eEE-EeecCCCCCCCccHHHH--------------HHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCC
Q 030914           65 EVVEQDVKENP-VML-YMKGVPEFPQCGFSSLA--------------VRVLGAYNVPISARNILEDPELKSAVKAFSHWP  128 (169)
Q Consensus        65 ~~i~~~~~~~~-Vvl-y~k~~~~~~~C~~c~~a--------------~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~  128 (169)
                      +.+++.+..++ ++| |..     |||+ |++.              .+.|+..+|.+-.+|++.++++.+    ..|-.
T Consensus        19 ~~f~~~i~~~~~~lV~F~a-----~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~----~~~v~   88 (350)
T 1sji_A           19 KNFKQVLKKYDVLCLYYHE-----SVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAKLAK----KLGFD   88 (350)
T ss_dssp             HHHHHHHTTCSEEEEEEEC-----CSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHHHHH----HHTCC
T ss_pred             HHHHHHHhhCCeEEEEEEC-----CCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHHHHH----hcCCC
Confidence            34555565544 444 444     8999 8422              223344468888999988866443    34677


Q ss_pred             CCcEEEe--CCe
Q 030914          129 TFPQIFI--KGE  138 (169)
Q Consensus       129 t~P~vfi--~g~  138 (169)
                      .+|.+++  +|+
T Consensus        89 ~~Pt~~~~~~g~  100 (350)
T 1sji_A           89 EEGSLYVLKGDR  100 (350)
T ss_dssp             STTEEEEEETTE
T ss_pred             ccceEEEEECCc
Confidence            8898754  776

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=93.45  E-value=0.015  Score=38.30  Aligned_cols=63  Identities=17%  Similarity=0.210  Sum_probs=42.3

Q ss_pred             CCCcch------HHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhh----cCCeEEEeecCCC
Q 030914           17 PSARSS------RIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVK----ENPVMLYMKGVPE   85 (169)
Q Consensus        17 p~cgfs------~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~----~~~Vvly~k~~~~   85 (169)
                      |.|+++      .++.++|..+|++|.. ||..|++.+                 +.+.+...    .-|+ ||..|   
T Consensus        10 ~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~-----------------~~l~~~~g~~~~~vP~-ifi~g---   68 (93)
T 1t1v_A           10 SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALR-----------------DEMRTLAGNPKATPPQ-IVNGN---   68 (93)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHH-----------------HHHHHHTTCTTCCSCE-EEETT---
T ss_pred             CCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHH-----------------HHHHHHhCCCCCCCCE-EEECC---
Confidence            788888      8999999999999988 888775443                 33333332    2243 45554   


Q ss_pred             CCCCccHHHHHHHHhc
Q 030914           86 FPQCGFSSLAVRVLGA  101 (169)
Q Consensus        86 ~~~C~~c~~a~~~L~~  101 (169)
                       ...+-+..+.++.++
T Consensus        69 -~~igG~d~l~~l~~~   83 (93)
T 1t1v_A           69 -HYCGDYELFVEAVEQ   83 (93)
T ss_dssp             -EEEEEHHHHHHHHHT
T ss_pred             -EEEeCHHHHHHHHhc
Confidence             245667777777654

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=93.13  E-value=0.63  Score=33.75  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=21.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcC
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNIL  112 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~  112 (169)
                      |+|+.-+    .||+.|......|.       ..++.+..++++
T Consensus        49 vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d   88 (196)
T 2ywi_A           49 TVIMFIC----NHCPFVKHVQHELVRLANDYMPKGVSFVAINSN   88 (196)
T ss_dssp             EEEEECC----SSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECS
T ss_pred             EEEEEeC----CCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            5555444    69999997655443       335777778874

>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum}

Probab=93.10  E-value=0.065  Score=44.52  Aligned_cols=36  Identities=8%  Similarity=0.111  Sum_probs=29.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC-eEEEEcC
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-ISARNIL  112 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~-~~~~di~  112 (169)
                      ...++.||..     ..||+|.++.-+|+.+|++ +..+|+.
T Consensus        58 e~gr~~LY~~-----~~cP~a~Rv~I~L~lkGL~e~i~vdl~   94 (362)
T 3m1g_A           58 EAGRYRLVAA-----RACPWAHRTVITRRLLGLENVISLGLT   94 (362)
T ss_dssp             CTTSEEEEEC-----TTCHHHHHHHHHHHHHTCTTTSEEEEC
T ss_pred             CCCeEEEEec-----CCCccHHHHHHHHHHhCCCceEEEecc
Confidence            4468999987     6899999999999999997 4455664

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=93.05  E-value=0.014  Score=39.20  Aligned_cols=31  Identities=10%  Similarity=0.215  Sum_probs=26.9

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|+++.++..+|.+.|++|.. ||..+++.
T Consensus        23 ~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~   54 (99)
T 3qmx_A           23 WSTCPFCMRALALLKRKGVEFQEYCIDGDNEA   54 (99)
T ss_dssp             CTTCHHHHHHHHHHHHHTCCCEEEECTTCHHH
T ss_pred             cCCChhHHHHHHHHHHCCCCCEEEEcCCCHHH
Confidence            48999999999999999999988 88776543

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=92.79  E-value=0.036  Score=38.78  Aligned_cols=31  Identities=23%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+
T Consensus        11 ~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~   42 (120)
T 3gkx_A           11 YPACSTCQKAKKWLIENNIEYTNRLIVDDNPT   42 (120)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCEEEETTTTCCC
T ss_pred             CCCChHHHHHHHHHHHcCCceEEEecccCcCC
Confidence            47899999999999999999988 99988654

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=92.78  E-value=0.21  Score=34.00  Aligned_cols=26  Identities=12%  Similarity=0.178  Sum_probs=17.9

Q ss_pred             CCCccHHHHHHHHhc----C---CCCeEEEEcC
Q 030914           87 PQCGFSSLAVRVLGA----Y---NVPISARNIL  112 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~---~v~~~~~di~  112 (169)
                      +||++|......|.+    +   ++.+..++++
T Consensus        44 ~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d   76 (145)
T 3erw_A           44 SWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLV   76 (145)
T ss_dssp             SSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECG
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEcc
Confidence            699999987766643    2   4556666665

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=92.74  E-value=0.79  Score=31.39  Aligned_cols=74  Identities=15%  Similarity=0.182  Sum_probs=45.6

Q ss_pred             cCCeEEEeecCCCCCCCccH------HHHHHHHhc--------CCCCeEEEEcCCCHH-----HHHHHHHhc-CCCCCcE
Q 030914           73 ENPVMLYMKGVPEFPQCGFS------SLAVRVLGA--------YNVPISARNILEDPE-----LKSAVKAFS-HWPTFPQ  132 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c------~~a~~~L~~--------~~v~~~~~di~~~~~-----~~~~l~~~~-g~~t~P~  132 (169)
                      +-.|++|+..    ..|+-|      +....+|+.        ....|+++||...++     .++...+.- .---+|.
T Consensus         7 ~v~i~VYGAe----~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPl   82 (111)
T 1xg8_A            7 SNAVVVYGAD----VICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPL   82 (111)
T ss_dssp             CEEEEEEECS----SCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSE
T ss_pred             EEEEEEEccc----ccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceE
Confidence            3457888875    357665      455666642        235578999975432     223333332 3456799


Q ss_pred             EEeCCeEee-ccHHHHHHH
Q 030914          133 IFIKGEFIG-GSDIILNMH  150 (169)
Q Consensus       133 vfi~g~~iG-G~d~l~~~~  150 (169)
                      |.+||+.|| |+-.|+..+
T Consensus        83 V~indeiVaEGnp~LK~I~  101 (111)
T 1xg8_A           83 ITMNDEYVADGYIQTKQIT  101 (111)
T ss_dssp             EEETTEEEEESSCCHHHHH
T ss_pred             EEECCEEeecCCccHHHHH
Confidence            999999998 665555544

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=92.71  E-value=0.57  Score=41.90  Aligned_cols=45  Identities=13%  Similarity=0.104  Sum_probs=33.2

Q ss_pred             CCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +||+.|++....|++    +  ++.+..+|++.++.+    .+..|..++|.+++
T Consensus       685 ~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~  735 (780)
T 3apo_A          685 PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQT----CQKAGIKAYPSVKL  735 (780)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHH----HHhcCCCcCCEEEE
Confidence            799999988766543    2  577888899887764    33446789999866

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=92.66  E-value=0.043  Score=36.60  Aligned_cols=31  Identities=13%  Similarity=0.172  Sum_probs=27.3

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCcccc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDTH   47 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~   47 (169)
                      |.|+|+.++-+.|.++|++|.. ||..|++.+
T Consensus        12 ~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~   43 (92)
T 2lqo_A           12 SWCGYCLRLKTALTANRIAYDEVDIEHNRAAA   43 (92)
T ss_dssp             TTCSSHHHHHHHHHHTTCCCEEEETTTCHHHH
T ss_pred             CCCHhHHHHHHHHHhcCCceEEEEcCCCHHHH
Confidence            8899999999999999999998 998876543

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=92.64  E-value=0.082  Score=42.77  Aligned_cols=43  Identities=16%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             CCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           87 PQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      |||++|++....|.+.        ++.+..+|...+.      ....+...+|.+++
T Consensus       277 ~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~------~~~~~v~~~Pt~~~  327 (361)
T 3uem_A          277 PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE------VEAVKVHSFPTLKF  327 (361)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB------CSSCCCCSSSEEEE
T ss_pred             CcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc------hhhcCCcccCeEEE
Confidence            8999999988777543        2445566776554      12347789999855

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=92.62  E-value=0.3  Score=33.60  Aligned_cols=46  Identities=13%  Similarity=0.352  Sum_probs=37.1

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCHH-------HHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           94 LAVRVLGAYNVPISARNILEDPE-------LKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        94 ~a~~~L~~~~v~~~~~di~~~~~-------~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      .....|++.|+.++.+++.++|.       +.+.|. ..|.-.+|.++|||+.+
T Consensus        34 ~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~-~~G~~~LP~~~VDGevv   86 (106)
T 3ktb_A           34 VVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQ-KHGADALPITLVDGEIA   86 (106)
T ss_dssp             HHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHH-TTCGGGCSEEEETTEEE
T ss_pred             HHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHHH-HcCcccCCEEEECCEEE
Confidence            55778899999999999998764       445444 46788999999999976

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=92.30  E-value=0.0081  Score=42.62  Aligned_cols=33  Identities=12%  Similarity=0.070  Sum_probs=27.3

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhC---CCCccc-ccCCC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHN---GMKYST-DVPND   43 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~---g~~~~s-~vl~d   43 (169)
                      +++|+|     |.|+|+.++.++|.+.   +++|.. ++..+
T Consensus        16 Vvvysk-----~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~   52 (127)
T 3l4n_A           16 IIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKH   52 (127)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHEEEESCCEEEEGGGS
T ss_pred             EEEEEc-----CCCccHHHHHHHHHHhcccCCCcEEEEecCC
Confidence            678888     8899999999999985   678876 77654

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=92.27  E-value=0.11  Score=36.18  Aligned_cols=100  Identities=16%  Similarity=0.107  Sum_probs=56.6

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHH
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSL   94 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~   94 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+             .+.+.+.++..-....--++-+.      .     
T Consensus        11 ~p~C~~c~ka~~~L~~~gi~~~~~di~~~~~t-------------~~eL~~~l~~~g~~~~~~l~n~~------~-----   66 (119)
T 3f0i_A           11 NPKCSKSRETLALLENQGIAPQVIKYLETSPS-------------VEELKRLYQQLGLNEVRAMMRCK------E-----   66 (119)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCEEECHHHHCCC-------------HHHHHHHHHHHTCSSGGGGBCTT------S-----
T ss_pred             CCCChHHHHHHHHHHHcCCceEEEEeccCcCc-------------HHHHHHHHHHcCCccHHHHhcCC------C-----
Confidence            47899999999999999999987 88877543             22333333332111011233321      0     


Q ss_pred             HHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH
Q 030914           95 AVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD  144 (169)
Q Consensus        95 a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d  144 (169)
                        ...++.++...  ++ .+.++.+.|.+...--.-|.|..+++.+-|++
T Consensus        67 --~~~k~l~l~~~--~l-s~~~~~~lm~~~p~LikRPIv~~~~~~~vG~~  111 (119)
T 3f0i_A           67 --ELYKELNLGDS--QL-SDDALFAAMAEHPKLIERPIVVCNGQARHGRP  111 (119)
T ss_dssp             --HHHHHTTTTCT--TC-CHHHHHHHHHHCGGGBCSCEEEETTEEEECSS
T ss_pred             --chhhhcCcccc--cC-CHHHHHHHHHhChhheeCCEEEECCEEEEeCC
Confidence              23334444321  12 23445555544333335699999998777765

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=91.97  E-value=0.31  Score=41.91  Aligned_cols=53  Identities=15%  Similarity=0.244  Sum_probs=36.7

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----CC----------CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN----------VPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~----------v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +|+|+...    +||++|++....+.+    +.          +.+..+|++.++++    .+..+...+|.+++
T Consensus        44 ~VlV~FyA----~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~l----a~~y~V~~~PTlil  110 (470)
T 3qcp_A           44 PWIVLFYN----DGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDL----CRKYDINFVPRLFF  110 (470)
T ss_dssp             CEEEEEEC----TTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHH----HHHTTCCSSCEEEE
T ss_pred             eEEEEEEC----CCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHH----HHHcCCCccCeEEE
Confidence            45554443    799999998776643    32          77888899887654    44456788998854

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=91.96  E-value=0.048  Score=38.03  Aligned_cols=31  Identities=19%  Similarity=0.311  Sum_probs=27.4

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+
T Consensus         7 ~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~   38 (120)
T 3l78_A            7 SPSCTSCRKARAWLNRHDVVFQEHNIMTSPLS   38 (120)
T ss_dssp             CSSCHHHHHHHHHHHHTTCCEEEEETTTSCCC
T ss_pred             CCCCHHHHHHHHHHHHcCCCeEEEecccCCCc
Confidence            37899999999999999999988 99987654

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=91.83  E-value=0.32  Score=33.67  Aligned_cols=46  Identities=24%  Similarity=0.347  Sum_probs=36.8

Q ss_pred             HHHHHHhcCCCCeEEEEcCCCHH-------HHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           94 LAVRVLGAYNVPISARNILEDPE-------LKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        94 ~a~~~L~~~~v~~~~~di~~~~~-------~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      ...+.|++.|+.++.+++.++|.       +.+.|. ..|.-.+|.++|||+.+
T Consensus        31 ~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~-~~G~~~LP~~~VDGevv   83 (110)
T 3kgk_A           31 TDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIE-ASGAEGLPLLLLDGETV   83 (110)
T ss_dssp             HHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHH-HHCGGGCCEEEETTEEE
T ss_pred             HHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHH-HcCcccCCEEEECCEEE
Confidence            45778899999999999998763       555454 45788999999999966

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=91.79  E-value=0.5  Score=34.06  Aligned_cols=48  Identities=17%  Similarity=0.132  Sum_probs=28.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCC--HHHHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILED--PELKSAVKAF  124 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~--~~~~~~l~~~  124 (169)
                      ...++|+.-+    .||+.|......|.+       .++.+..++++.+  ..++..++++
T Consensus        60 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~  116 (186)
T 1jfu_A           60 GKTLLVNLWA----TWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEA  116 (186)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHT
T ss_pred             CCEEEEEEEe----CCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHc
Confidence            3445555444    599999976655532       3566777777754  3455555443

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=91.62  E-value=0.045  Score=38.27  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=27.2

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+
T Consensus        10 ~~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~   41 (120)
T 3fz4_A           10 YPKCSTCRRAKAELDDLAWDYDAIDIKKNPPA   41 (120)
T ss_dssp             CSSCHHHHHHHHHHHHHTCCEEEEETTTSCCC
T ss_pred             CCCChHHHHHHHHHHHcCCceEEEEeccCchh
Confidence            37899999999999999999988 99988654

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=91.01  E-value=0.79  Score=33.07  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=26.5

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCCCHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILEDPE  116 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~~~~  116 (169)
                      ...|+|+..+    .|||+|......|.   +.++.+..++++.+++
T Consensus        58 gk~vll~F~a----~~C~~C~~~~~~l~~l~~~~v~vv~vs~~d~~~  100 (176)
T 3kh7_A           58 GKPALVNVWG----TWCPSCRVEHPELTRLAEQGVVIYGINYKDDNA  100 (176)
T ss_dssp             SSCEEEEEEC----TTCHHHHHHHHHHHHHHHTTCEEEEEEESCCHH
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH
Confidence            4456665544    69999998766553   3378888888765544

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=90.70  E-value=0.28  Score=43.96  Aligned_cols=66  Identities=18%  Similarity=0.219  Sum_probs=38.4

Q ss_pred             HHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--
Q 030914           65 EVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        65 ~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      +.+++.++++ .++|+...    |||++|++....+++.      .|.+..+|++.++++...    .|-..+|.+++  
T Consensus       124 ~~f~~~i~~~~~~lv~Fya----~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~----~~v~~~Pt~~~~~  195 (780)
T 3apo_A          124 REFDAAVNSGELWFVNFYS----PGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRM----KGVNSYPSLFIFR  195 (780)
T ss_dssp             HHHHHHHTSSSCEEEEEEC----SSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCSSCC------------CEEEEEC
T ss_pred             HhHHhhhcCCCcEEEEEeC----CCCcchhHhhHHHHHHHHHhcCceEEEEEeCCCcHHHHHH----cCCceeeeEEEEe
Confidence            3455555544 34444433    8999999988776542      377888999887654333    35567787755  


Q ss_pred             CCe
Q 030914          136 KGE  138 (169)
Q Consensus       136 ~g~  138 (169)
                      +|+
T Consensus       196 ~g~  198 (780)
T 3apo_A          196 SGM  198 (780)
T ss_dssp             TTS
T ss_pred             CCc
Confidence            665

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=90.52  E-value=0.024  Score=38.48  Aligned_cols=33  Identities=9%  Similarity=-0.053  Sum_probs=27.4

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCC
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPND   43 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d   43 (169)
                      +++|.+     |.|+++.++..+|.+.|++|.. ++..+
T Consensus        21 v~vy~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~   54 (113)
T 3rhb_A           21 VVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQL   54 (113)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEEGGGS
T ss_pred             EEEEEC-----CCChhHHHHHHHHHHcCCCCeEEEeecC
Confidence            456666     8999999999999999999977 77653

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=90.44  E-value=0.38  Score=33.84  Aligned_cols=62  Identities=13%  Similarity=0.223  Sum_probs=34.2

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh----cC---CCCeEEEEcCCCH---------------HHHHHHHHhcCCCCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY---NVPISARNILEDP---------------ELKSAVKAFSHWPTF  130 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~---~v~~~~~di~~~~---------------~~~~~l~~~~g~~t~  130 (169)
                      ...++|+.-+    +||+.|......|.    ++   ++.+..++++...               .....+.+..|...+
T Consensus        41 gk~vll~F~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  116 (158)
T 3hdc_A           41 GKIVLVNFWA----SWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL  116 (158)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence            3445554444    69999998666553    33   3445555555410               001234455577889


Q ss_pred             cEE-Ee--CCe
Q 030914          131 PQI-FI--KGE  138 (169)
Q Consensus       131 P~v-fi--~g~  138 (169)
                      |.+ +|  +|+
T Consensus       117 P~~~lid~~G~  127 (158)
T 3hdc_A          117 PDTFIVDRKGI  127 (158)
T ss_dssp             SEEEEECTTSB
T ss_pred             ceEEEEcCCCC
Confidence            984 55  454

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5

Probab=90.18  E-value=0.34  Score=37.33  Aligned_cols=69  Identities=13%  Similarity=0.031  Sum_probs=45.8

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHH-----hcCCCCCcEE--EeCCeEeeccH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKA-----FSHWPTFPQI--FIKGEFIGGSD  144 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~-----~~g~~t~P~v--fi~g~~iGG~d  144 (169)
                      +...+.+|..     +.++.|.+++-+|.+.||+|+.++++.   .....+.     .+...++|.+  ..||..|....
T Consensus        16 ~~~~~~Ly~~-----~~~~~~~~vrl~L~e~gi~ye~~~~~~---~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~   87 (248)
T 2fno_A           16 GMNTFDLYYW-----PVPFRGQLIRGILAHCGCSWDEHDVDA---IEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMP   87 (248)
T ss_dssp             SCBSEEEECC-----SSSSTTHHHHHHHHHTTCCEECCCHHH---HHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHH
T ss_pred             CCCceEEEec-----CCCCchHHHHHHHHHcCCCcEeeccch---HHHHHhccccccCCCCCCCCEEEeccCCEEEecHH
Confidence            3456778876     445678999999999999999776531   1112221     3556789999  45676666655


Q ss_pred             HHHH
Q 030914          145 IILN  148 (169)
Q Consensus       145 ~l~~  148 (169)
                      -+..
T Consensus        88 AI~~   91 (248)
T 2fno_A           88 AIAI   91 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4444

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=90.03  E-value=0.7  Score=33.38  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=18.9

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHH----hcCC--CCeEEEEc
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVL----GAYN--VPISARNI  111 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~--v~~~~~di  111 (169)
                      ..|+|+.-.    .+|++|......|    ++++  +.+..+++
T Consensus        34 k~vlv~F~a----~~C~~C~~~~~~l~~l~~~~~~~~~~v~v~~   73 (188)
T 2cvb_A           34 PLLAVVFMC----NHCPYVKGSIGELVALAERYRGKVAFVGINA   73 (188)
T ss_dssp             SEEEEEEEC----SSCHHHHTTHHHHHHHHHHTTTTEEEEEEEC
T ss_pred             CEEEEEEEC----CCCccHHHHHHHHHHHHHHhhcCeEEEEEEc
Confidence            344444443    6999999654443    3443  44555555

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=89.92  E-value=0.15  Score=42.84  Aligned_cols=53  Identities=19%  Similarity=0.325  Sum_probs=34.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC--------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY--------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~--------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ..|+|+...    +||++|++....|.+.        ++.+..+|++.+ +    +....+...+|.+++
T Consensus       371 k~vlv~f~a----~wC~~C~~~~p~~~~l~~~~~~~~~v~~~~id~~~~-~----~~~~~~v~~~Pt~~~  431 (481)
T 3f8u_A          371 KDVLIEFYA----PWCGHCKNLEPKYKELGEKLSKDPNIVIAKMDATAN-D----VPSPYEVRGFPTIYF  431 (481)
T ss_dssp             CEEEEEEEC----TTBHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTSS-C----CCTTCCCCSSSEEEE
T ss_pred             CcEEEEEec----CcChhHHHhhHHHHHHHHHhccCCCEEEEEEECCch-h----hHhhCCCcccCEEEE
Confidence            446555554    7999999988776443        345666777655 2    323346788998876

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=89.71  E-value=0.028  Score=46.87  Aligned_cols=32  Identities=13%  Similarity=-0.145  Sum_probs=26.9

Q ss_pred             hhhhccCCCCCCCCcchHHHHH-HHHhCCCCccc-ccCC
Q 030914            6 SNLIFKGIASYPSARSSRIVSG-SLYHNGMKYST-DVPN   42 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~-~l~~~g~~~~s-~vl~   42 (169)
                      +++|+|     |.|+|+.++.+ +|.+.|++|.. +|++
T Consensus       263 VvVYsk-----~~CPyC~~Ak~~LL~~~gV~y~eidVlE  296 (362)
T 2jad_A          263 IFVASK-----TYCPYSHAALNTLFEKLKVPRSKVLVLQ  296 (362)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHTTTCCCTTTEEEEE
T ss_pred             EEEEEc-----CCCcchHHHHHHHHHHcCCCcceEEEEE
Confidence            578888     89999999997 79999999876 7754

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=88.77  E-value=0.11  Score=36.62  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCC
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFR   51 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k   51 (169)
                      .|.|++++++..+|.++|++|.. |+..|+..++.++
T Consensus         8 ~~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~   44 (132)
T 1z3e_A            8 SPSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIK   44 (132)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHH
T ss_pred             CCCChHHHHHHHHHHHcCCceEEEEccCCCccHHHHH
Confidence            37899999999999999999988 9998876554443

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=88.46  E-value=1.4  Score=30.10  Aligned_cols=38  Identities=11%  Similarity=-0.018  Sum_probs=23.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDP  115 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~  115 (169)
                      ..|+|+.-+    .||+.|......|.+       .++.+..++++.++
T Consensus        33 k~vll~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~vv~vs~d~~~   77 (143)
T 4fo5_A           33 RYTLLNFWA----AYDAESRARNVQLANEVNKFGPDKIAMCSISMDEKE   77 (143)
T ss_dssp             CEEEEEEEC----TTCHHHHHHHHHHHHHHTTSCTTTEEEEEEECCSCH
T ss_pred             CEEEEEEEc----CcCHHHHHHHHHHHHHHHHhCcCCEEEEEEEccCCH
Confidence            445655544    599999987665533       23556666666554

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=87.82  E-value=1.3  Score=31.42  Aligned_cols=58  Identities=16%  Similarity=0.027  Sum_probs=32.7

Q ss_pred             hcCCeEEEee-cCCCCCCCccHH-H-HH------HHHhcCCCC-eEEEEcCCCHHHHHHHHHhcCCC-CCcEEE
Q 030914           72 KENPVMLYMK-GVPEFPQCGFSS-L-AV------RVLGAYNVP-ISARNILEDPELKSAVKAFSHWP-TFPQIF  134 (169)
Q Consensus        72 ~~~~Vvly~k-~~~~~~~C~~c~-~-a~------~~L~~~~v~-~~~~di~~~~~~~~~l~~~~g~~-t~P~vf  134 (169)
                      +...|+|+.- +    .+||.|. . +.      +-+++.|+. +.-+.++....++..+++ .+.. ++|.+.
T Consensus        34 ~gk~vvl~f~~~----~~c~~C~~~e~~~l~~~~~~~~~~~v~~vv~Is~d~~~~~~~~~~~-~~~~~~~~~l~  102 (162)
T 1tp9_A           34 AGKKVILFGVPG----AFTPTCSLKHVPGFIEKAGELKSKGVTEILCISVNDPFVMKAWAKS-YPENKHVKFLA  102 (162)
T ss_dssp             TTSEEEEEEESC----TTCHHHHHTHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHT-CTTCSSEEEEE
T ss_pred             CCCcEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHh-cCCCCCeEEEE
Confidence            4455666654 4    4899999 2 22      223456888 888887643344444433 3332 466543

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=87.46  E-value=1.3  Score=30.91  Aligned_cols=35  Identities=14%  Similarity=0.012  Sum_probs=22.4

Q ss_pred             CeEEEee-cCCCCCCCccHHHHHHHHhcC-------CCCeEEEEcCC
Q 030914           75 PVMLYMK-GVPEFPQCGFSSLAVRVLGAY-------NVPISARNILE  113 (169)
Q Consensus        75 ~Vvly~k-~~~~~~~C~~c~~a~~~L~~~-------~v~~~~~di~~  113 (169)
                      .++|+.- +    .||+.|......|.+.       ++.+..++++.
T Consensus        38 ~vvl~F~~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vv~is~d~   80 (160)
T 1xvw_A           38 NVLLVFFPL----AFTGICQGELDQLRDHLPEFENDDSAALAISVGP   80 (160)
T ss_dssp             EEEEEECSC----TTSSHHHHHHHHHHHTGGGTSSSSEEEEEEESCC
T ss_pred             CEEEEEECC----CCCCchHHHHHHHHHHHHHHHHCCcEEEEEeCCC
Confidence            4555543 4    5999999877766543       45556666654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=87.37  E-value=0.81  Score=39.57  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=35.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      ..|+|+...    +||++|++....|++.         ++.+..+|++.+..  ..+.+..|-..+|.+++
T Consensus        31 k~vlV~FyA----~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~--~~l~~~~~V~~~PTl~~   95 (519)
T 3t58_A           31 SAWAVEFFA----SWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN--SAVCREFNIAGFPTVRF   95 (519)
T ss_dssp             SEEEEEEEC----TTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG--HHHHHHTTCCSBSEEEE
T ss_pred             CeEEEEEEC----CCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc--HHHHHHcCCcccCEEEE
Confidence            344444433    7999999887766432         36677778854221  23445567889999854

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=87.28  E-value=1.9  Score=29.85  Aligned_cols=35  Identities=6%  Similarity=0.041  Sum_probs=20.9

Q ss_pred             cCCeEEEeecCCCCCCCccHHH-HHHHHhc-------CCCCeEEEEc
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSL-AVRVLGA-------YNVPISARNI  111 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~-a~~~L~~-------~~v~~~~~di  111 (169)
                      ...|+|+.-+    .|||.|.. +...|.+       .++.+..+++
T Consensus        28 gk~vlv~f~a----~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~   70 (158)
T 3eyt_A           28 GKVIVIEAFQ----MLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHT   70 (158)
T ss_dssp             TSEEEEEEEC----TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCEEEEEEEC----CcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEe
Confidence            3455554443    59999998 4554432       2455666665

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=86.88  E-value=3.2  Score=27.25  Aligned_cols=24  Identities=13%  Similarity=0.119  Sum_probs=15.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG  100 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~  100 (169)
                      ...++|+..+    +|||+|......|.
T Consensus        22 gk~~lv~f~~----~~C~~C~~~~~~l~   45 (138)
T 4evm_A           22 GKKVYLKFWA----SWCSICLASLPDTD   45 (138)
T ss_dssp             TSEEEEEECC----TTCHHHHHHHHHHH
T ss_pred             CCEEEEEEEc----CcCHHHHHHHHHHH
Confidence            3445554443    69999998776553

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=86.72  E-value=0.058  Score=37.13  Aligned_cols=33  Identities=12%  Similarity=0.041  Sum_probs=27.8

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccC
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHE   48 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~   48 (169)
                      .|.|++++++.++|.++|++|.. |+..++.+++
T Consensus         7 ~~~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~   40 (114)
T 1rw1_A            7 IKACDTMKKARTWLDEHKVAYDFHDYKAVGIDRE   40 (114)
T ss_dssp             CSSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHH
T ss_pred             CCCChHHHHHHHHHHHCCCceEEEeecCCCCCHH
Confidence            47899999999999999999988 9987764433

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=86.50  E-value=0.12  Score=33.39  Aligned_cols=29  Identities=17%  Similarity=0.327  Sum_probs=24.6

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDP   44 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~   44 (169)
                      .|.|++++++..+|.+.+++|.. |+..++
T Consensus        13 ~~~C~~C~~~~~~L~~~~i~~~~~di~~~~   42 (92)
T 2khp_A           13 RPGCPYCARAKALLARKGAEFNEIDASATP   42 (92)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCEEEESTTSH
T ss_pred             CCCChhHHHHHHHHHHcCCCcEEEECCCCH
Confidence            38899999999999999999987 876543

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=86.29  E-value=0.86  Score=31.92  Aligned_cols=70  Identities=16%  Similarity=0.126  Sum_probs=43.4

Q ss_pred             CCCCcch------HHHHHHHHhCCCCccc-ccCCCccccCCCCCcccc---cCCcccHHHHHHHHhhcCCeEEEeecCCC
Q 030914           16 YPSARSS------RIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV---DASGLSLKEVVEQDVKENPVMLYMKGVPE   85 (169)
Q Consensus        16 ~p~cgfs------~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~---pt~~~~~~~~i~~~~~~~~Vvly~k~~~~   85 (169)
                      .|.|++.      .++.++|...|++|.. ||..|++.+..+...+.-   |..           =....-.||..+   
T Consensus         7 t~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~-----------G~~tvPQIFi~~---   72 (121)
T 1u6t_A            7 ASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPAT-----------GYPLPPQIFNES---   72 (121)
T ss_dssp             CTTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSS-----------SSCCSCEEEETT---
T ss_pred             cCCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccC-----------CCcCCCEEEECC---
Confidence            3677876      6999999999999998 998886654333222100   000           011223477766   


Q ss_pred             CCCCccHHHHHHHHh
Q 030914           86 FPQCGFSSLAVRVLG  100 (169)
Q Consensus        86 ~~~C~~c~~a~~~L~  100 (169)
                       ..|+-|.....+-+
T Consensus        73 -~~iGG~Dd~~~l~e   86 (121)
T 1u6t_A           73 -QYRGDYDAFFEARE   86 (121)
T ss_dssp             -EEEEEHHHHHHHHH
T ss_pred             -EEEechHHHHHhhh
Confidence             47888887666543

>2g2q_A Glutaredoxin-2; thioredoxin-fold, oxidoreductase, poxvirus; 2.50A {Vaccinia virus}

Probab=85.99  E-value=0.76  Score=32.14  Aligned_cols=34  Identities=18%  Similarity=0.358  Sum_probs=28.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEE--EEcC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISA--RNIL  112 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~--~di~  112 (169)
                      ..+++|+|     |.|+-|+-+-++|....=+|+.  +||.
T Consensus         3 ~tLILfGK-----P~C~vCe~~s~~l~~ledeY~ilrVNIl   38 (124)
T 2g2q_A            3 NVLIIFGK-----PYCSICENVSDAVEELKSEYDILHVDIL   38 (124)
T ss_dssp             EEEEEEEC-----TTCHHHHHHHHHHHTTTTTEEEEEEECC
T ss_pred             ceEEEeCC-----CccHHHHHHHHHHHHhhccccEEEEEee
Confidence            35789999     8999999999999888877765  4554

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=85.63  E-value=3.8  Score=30.93  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             hcCCeEEEee-cCCCCCCCccHH-HHHH-------HHhcCCC-CeEEEEcCCCHHHHHHHH
Q 030914           72 KENPVMLYMK-GVPEFPQCGFSS-LAVR-------VLGAYNV-PISARNILEDPELKSAVK  122 (169)
Q Consensus        72 ~~~~Vvly~k-~~~~~~~C~~c~-~a~~-------~L~~~~v-~~~~~di~~~~~~~~~l~  122 (169)
                      +..+|+|+.- +    .|||.|. .-..       -+++.|+ .+.-+.++.....+..++
T Consensus        32 ~gk~vvl~f~~a----~~cp~C~~~e~~~l~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~   88 (241)
T 1nm3_A           32 DNKTVIVFSLPG----AFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKE   88 (241)
T ss_dssp             TTSEEEEEEESC----SSCHHHHHTHHHHHHHHHHHHHHTTCCEEEEEESSCHHHHHHHHH
T ss_pred             CCCeEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEcCCHHHHHHHHH
Confidence            4456666653 4    4899999 2222       2355688 777777764334444443

>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*

Probab=85.59  E-value=0.75  Score=34.06  Aligned_cols=57  Identities=12%  Similarity=0.103  Sum_probs=38.0

Q ss_pred             HHHHHHHHhcCCCCeEEEEcC--CCH-HHHHHHHHhcCCCCCcEEEeCC-eEeeccHHHHH
Q 030914           92 SSLAVRVLGAYNVPISARNIL--EDP-ELKSAVKAFSHWPTFPQIFIKG-EFIGGSDIILN  148 (169)
Q Consensus        92 c~~a~~~L~~~~v~~~~~di~--~~~-~~~~~l~~~~g~~t~P~vfi~g-~~iGG~d~l~~  148 (169)
                      +.+++-+|.+.||+|+.+.|+  ..+ ....++.+.+...++|.+..+| ..|.....+..
T Consensus        14 s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~   74 (211)
T 4gci_A           14 SLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQ   74 (211)
T ss_dssp             THHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHH
Confidence            677888999999999876654  222 1223455677778999999877 44555443333

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=84.97  E-value=2.5  Score=29.65  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=24.7

Q ss_pred             eEEEee-cCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHHHH
Q 030914           76 VMLYMK-GVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPELKS  119 (169)
Q Consensus        76 Vvly~k-~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~~~  119 (169)
                      |+|+.- +    .|||.|......|.+       .|+.+..++++....++.
T Consensus        32 vvl~F~~a----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d~~~~~~~   79 (161)
T 3drn_A           32 IVLYFYPK----DDTPGSTREASAFRDNWDLLKDYDVVVIGVSSDDINSHKR   79 (161)
T ss_dssp             EEEEECSC----TTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESCCHHHHHH
T ss_pred             EEEEEEcC----CCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHH
Confidence            565544 4    599999976665543       456666777764333333

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=84.77  E-value=0.077  Score=37.32  Aligned_cols=33  Identities=9%  Similarity=-0.078  Sum_probs=26.8

Q ss_pred             hhhhccCCCCCCCCcchHHH-HHHHHhCC---CCccc-ccCCC
Q 030914            6 SNLIFKGIASYPSARSSRIV-SGSLYHNG---MKYST-DVPND   43 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~-~~~l~~~g---~~~~s-~vl~d   43 (169)
                      +++|.|     |.|+|+.++ ..+|...|   ++|.. +|..+
T Consensus        39 Vvvy~~-----~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~   76 (129)
T 3ctg_A           39 VFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELDEM   76 (129)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGS
T ss_pred             EEEEEC-----CCCCchHHHHHHHHHhcCccCCCcEEEEcccc
Confidence            457765     889999999 99999999   77766 77655

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=84.67  E-value=3.7  Score=29.47  Aligned_cols=58  Identities=14%  Similarity=0.004  Sum_probs=33.3

Q ss_pred             hcCCeEEEe-ecCCCCCCCccHHH-HHHH-------HhcCCC-CeEEEEcCCCHHHHHHHHHhcCCC-CCcEEE
Q 030914           72 KENPVMLYM-KGVPEFPQCGFSSL-AVRV-------LGAYNV-PISARNILEDPELKSAVKAFSHWP-TFPQIF  134 (169)
Q Consensus        72 ~~~~Vvly~-k~~~~~~~C~~c~~-a~~~-------L~~~~v-~~~~~di~~~~~~~~~l~~~~g~~-t~P~vf  134 (169)
                      +..+|+|+. -+    .|||.|.. -...       +++.|+ .+.-+.++.....+..+++. +.+ .+|.+.
T Consensus        30 ~Gk~vvl~f~~a----~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~~~~~~-~~~~~fp~l~   98 (167)
T 2wfc_A           30 AGKKGVLFAVPG----AFTPGSSKTHLPGYVEQAAAIHGKGVDIIACMAVNDSFVMDAWGKAH-GADDKVQMLA   98 (167)
T ss_dssp             TTSEEEEEEESC----TTCHHHHHTHHHHHHHTHHHHHHTTCCEEEEEESSCHHHHHHHHHHT-TCTTTSEEEE
T ss_pred             CCCcEEEEEeCC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHhc-CCCcceEEEE
Confidence            444566654 34    48999997 3322       345688 77777776444444444443 432 377553

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=84.34  E-value=0.72  Score=39.02  Aligned_cols=56  Identities=18%  Similarity=0.307  Sum_probs=35.1

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC---------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY---------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~---------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      ..+|+|+...    +||++|++....+.+.         ++.+..+|.+.+...     . .+...+|.+++  +|+
T Consensus       376 ~k~vlv~F~a----~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-----~-~~v~~~Pt~~~~~~G~  442 (504)
T 2b5e_A          376 KKDVLVLYYA----PWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTENDVR-----G-VVIEGYPTIVLYPGGK  442 (504)
T ss_dssp             TCCEEEEEEC----TTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-----S-CCCSSSSEEEEECCTT
T ss_pred             CCCEEEEEEC----CCChhHHHHhHHHHHHHHHhhccCCcEEEEEecCCccccc-----c-CCceecCeEEEEeCCc
Confidence            3456555543    7999999887766432         355666777654321     2 46778998855  663

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=84.23  E-value=3.7  Score=29.48  Aligned_cols=57  Identities=16%  Similarity=0.128  Sum_probs=33.4

Q ss_pred             hcCCeEE-EeecCCCCCCCccHHHH-HHH-------HhcCCCC-eEEEEcCCCHHHHHHHHHhcCC-CCCcEE
Q 030914           72 KENPVML-YMKGVPEFPQCGFSSLA-VRV-------LGAYNVP-ISARNILEDPELKSAVKAFSHW-PTFPQI  133 (169)
Q Consensus        72 ~~~~Vvl-y~k~~~~~~~C~~c~~a-~~~-------L~~~~v~-~~~~di~~~~~~~~~l~~~~g~-~t~P~v  133 (169)
                      +..+++| |.-+    .|||.|..- ...       +++.|+. +.-+.++.....+..+++ .+. ..+|.+
T Consensus        42 ~gk~vvl~~~~a----~wcp~C~~eh~p~l~~~~~~~~~~g~~~vv~Is~d~~~~~~~~~~~-~~~~~~fp~l  109 (171)
T 2pwj_A           42 KDKKVVIFGLPG----AYTGVCSSKHVPPYKHNIDKFKAKGVDSVICVAINDPYTVNAWAEK-IQAKDAIEFY  109 (171)
T ss_dssp             TTSEEEEEECSC----TTCTTHHHHTHHHHHHTHHHHHHTTCSEEEEEESSCHHHHHHHHHH-TTCTTTSEEE
T ss_pred             CCCCEEEEEecC----CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHH-hCCCCceEEE
Confidence            4434544 4444    599999974 332       3456888 888887654444444444 344 267854

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=83.97  E-value=1.1  Score=32.99  Aligned_cols=34  Identities=12%  Similarity=0.248  Sum_probs=23.7

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCC
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILE  113 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~  113 (169)
                      .|+.|..     ++||+|++.-..|.+    ++  +.|..+++..
T Consensus        27 ~vv~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~v~~~~~p~~~   66 (193)
T 3hz8_A           27 EVLEFFG-----YFCPHCAHLEPVLSKHAKSFKDDMYLRTEHVVW   66 (193)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHTTCCTTEEEEEEECCC
T ss_pred             EEEEEEC-----CCChhHHHHHHHHHHHHHHCCCCeEEEEecCCC
Confidence            3667777     799999988776643    33  4566777754

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=83.86  E-value=0.24  Score=30.82  Aligned_cols=28  Identities=7%  Similarity=0.197  Sum_probs=23.9

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDP   44 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~   44 (169)
                      |.|++++++..+|.+.|++|.. |+..++
T Consensus         9 ~~C~~C~~~~~~l~~~~i~~~~~~i~~~~   37 (82)
T 1fov_A            9 ETCPYCHRAKALLSSKGVSFQELPIDGNA   37 (82)
T ss_dssp             SSCHHHHHHHHHHHHHTCCCEEEECTTCS
T ss_pred             CCChhHHHHHHHHHHCCCCcEEEECCCCH
Confidence            7899999999999999999887 776543

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=83.47  E-value=4.8  Score=27.98  Aligned_cols=47  Identities=4%  Similarity=-0.145  Sum_probs=27.8

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcCCCHHHHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNILEDPELKSAVKA  123 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~~~~~~~~~l~~  123 (169)
                      ..++||.-..   .+||.|......|       .+.|+.+.-+.++....++..+++
T Consensus        36 k~~vl~F~~~---~~c~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~   89 (163)
T 3gkn_A           36 HWLVIYFYPK---DSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAK   89 (163)
T ss_dssp             SCEEEEECSC---TTSHHHHHHHHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CcEEEEEeCC---CCCCcHHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence            3565554421   4899998654433       445677777777644455555444

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=83.31  E-value=3.2  Score=30.09  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=23.9

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcC
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNIL  112 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~  112 (169)
                      +...|+|+...    .|||.|......|       ...++.+..++++
T Consensus        47 ~Gk~vll~F~a----twC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           47 KGSPLLIYNVA----SKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             TTSCEEEEEEC----SSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CCCEEEEEEec----CCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            34556666554    5999997555444       3346777778776

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=83.27  E-value=1.8  Score=32.30  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=26.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHH---hc------CCCCeEEEEcCCC
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVL---GA------YNVPISARNILED  114 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L---~~------~~v~~~~~di~~~  114 (169)
                      ..||-|..     +|||+|++....|   ++      -+|.+..+++..+
T Consensus       115 ~~vveFf~-----~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~  159 (197)
T 1un2_A          115 PQVLEFFS-----FFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM  159 (197)
T ss_dssp             CSEEEEEC-----TTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred             CEEEEEEC-----CCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence            35666776     7999999988665   32      2578889999764

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=83.11  E-value=5.3  Score=28.97  Aligned_cols=62  Identities=15%  Similarity=0.000  Sum_probs=34.1

Q ss_pred             HHHhhcCCeEEE-eecCCCCCCCccHH--HHHHH------HhcCCCCeEE-EEcCCCHHHHHHHHHhcCCC-CCcEEE
Q 030914           68 EQDVKENPVMLY-MKGVPEFPQCGFSS--LAVRV------LGAYNVPISA-RNILEDPELKSAVKAFSHWP-TFPQIF  134 (169)
Q Consensus        68 ~~~~~~~~Vvly-~k~~~~~~~C~~c~--~a~~~------L~~~~v~~~~-~di~~~~~~~~~l~~~~g~~-t~P~vf  134 (169)
                      .++.+..+|+|| .-+    .|||.|.  ++..+      +++.|+.+.- +..+.....+..+++ .+.+ .+|.+.
T Consensus        38 ~d~~~gk~vvL~f~pa----~wcp~C~~~e~p~l~~~~~~~~~~gv~vv~~iS~D~~~~~~~f~~~-~~~~~~fp~l~  110 (173)
T 3mng_A           38 AELFKGKKGVLFGVPG----AFTPGCSKTHLPGFVEQAEALKAKGVQVVACLSVNDAFVTGEWGRA-HKAEGKVRLLA  110 (173)
T ss_dssp             HHHTTTSEEEEEECSC----TTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHH-TTCTTTCEEEE
T ss_pred             HHHhCCCcEEEEEEeC----CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHH-hCCCCceEEEE
Confidence            343444556654 333    5999999  34333      3456788764 676543444444443 3443 577543

>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}

Probab=83.08  E-value=0.53  Score=37.59  Aligned_cols=20  Identities=15%  Similarity=0.333  Sum_probs=15.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHh
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLG  100 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~  100 (169)
                      |++|+-     |.||||++.-.-|.
T Consensus       151 I~vFtD-----p~CPYCkkl~~~l~  170 (273)
T 3tdg_A          151 LYIVSD-----PMCPHCQKELTKLR  170 (273)
T ss_dssp             EEEEEC-----TTCHHHHHHHHTHH
T ss_pred             EEEEEC-----cCChhHHHHHHHHH
Confidence            666666     89999998876554

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=82.95  E-value=4.5  Score=27.94  Aligned_cols=37  Identities=8%  Similarity=0.018  Sum_probs=21.8

Q ss_pred             cCCeEEEeecCCCCCCCcc-HHHHHHHHh-------c----CCCCeEEEEcCC
Q 030914           73 ENPVMLYMKGVPEFPQCGF-SSLAVRVLG-------A----YNVPISARNILE  113 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~-c~~a~~~L~-------~----~~v~~~~~di~~  113 (169)
                      ...++|+.-.    .|||. |......|.       +    .++.+..+.++.
T Consensus        23 gk~vll~f~~----~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~   71 (164)
T 2ggt_A           23 GQWLLIYFGF----THCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   71 (164)
T ss_dssp             TCEEEEEEEC----TTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCT
T ss_pred             CCEEEEEEEe----CCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCC
Confidence            3455665544    59997 986555442       2    256666666654

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=82.03  E-value=0.13  Score=35.71  Aligned_cols=30  Identities=13%  Similarity=0.147  Sum_probs=26.0

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|.+++++.++|.++|++|.. |+..++.
T Consensus        12 ~~~C~~C~ka~~~L~~~gi~y~~~di~~~~~   42 (120)
T 2kok_A           12 IKNCDTMKKARIWLEDHGIDYTFHDYKKEGL   42 (120)
T ss_dssp             CSSCHHHHHHHHHHHHHTCCEEEEEHHHHCC
T ss_pred             CCCChHHHHHHHHHHHcCCcEEEEeeeCCCC
Confidence            37899999999999999999988 8887653

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=81.36  E-value=2.4  Score=30.93  Aligned_cols=42  Identities=5%  Similarity=-0.077  Sum_probs=25.3

Q ss_pred             CCeEEEee-cCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHHHH
Q 030914           74 NPVMLYMK-GVPEFPQCGFSSLAVRVLGA-------YNVPISARNILEDPELKS  119 (169)
Q Consensus        74 ~~Vvly~k-~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~~~  119 (169)
                      ..++|+.- +    .+||.|......|.+       .++.+..++++..+.+++
T Consensus        46 k~vvl~F~~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d~~~~~~~   95 (195)
T 2bmx_A           46 KWRVVFFWPK----DFTFVCPTEIAAFSKLNDEFEDRDAQILGVSIDSEFAHFQ   95 (195)
T ss_dssp             CEEEEEECSC----TTSCCCHHHHHHHHHTHHHHHTTTEEEEEEESSCHHHHHH
T ss_pred             CcEEEEEEcC----CCCCCcHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHH
Confidence            34555544 4    599999876655533       367777777765333333

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=81.35  E-value=4.7  Score=29.59  Aligned_cols=62  Identities=16%  Similarity=-0.005  Sum_probs=34.7

Q ss_pred             HHHhhcCCeE-EEeecCCCCCCCccHHH--HHHH------HhcCCCC-eEEEEcCCCHHHHHHHHHhcCCC-CCcEEE
Q 030914           68 EQDVKENPVM-LYMKGVPEFPQCGFSSL--AVRV------LGAYNVP-ISARNILEDPELKSAVKAFSHWP-TFPQIF  134 (169)
Q Consensus        68 ~~~~~~~~Vv-ly~k~~~~~~~C~~c~~--a~~~------L~~~~v~-~~~~di~~~~~~~~~l~~~~g~~-t~P~vf  134 (169)
                      .++.+..+|+ +|.-+    .|||.|..  +..+      +++.|+. +.-+.++.....+...++ .+.+ .+|.+.
T Consensus        51 ~d~~~Gk~vvL~f~~a----~wcp~C~~~e~p~l~~~~~~~~~~gv~~vv~Is~d~~~~~~~f~~~-~~~~~~fp~l~  123 (184)
T 3uma_A           51 ELLFKGKRVVLFAVPG----AFTPTCSLNHLPGYLENRDAILARGVDDIAVVAVNDLHVMGAWATH-SGGMGKIHFLS  123 (184)
T ss_dssp             HHHHTTSEEEEEEESC----TTCHHHHHTHHHHHHHTHHHHHTTTCCEEEEEESSCHHHHHHHHHH-HTCTTTSEEEE
T ss_pred             HHHhCCCCEEEEEEcC----CCCCCcCHHHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHHHHH-hCCCCceEEEE
Confidence            3323444454 44444    59999997  2222      3456788 877888644444444444 3443 477654

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=81.06  E-value=0.85  Score=28.19  Aligned_cols=30  Identities=10%  Similarity=0.271  Sum_probs=25.4

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|++++++...|.+.+++|.. |+..+++
T Consensus         8 ~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~   38 (81)
T 1h75_A            8 RNDCVQCHATKRAMENRGFDFEMINVDRVPE   38 (81)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCEEEETTTCHH
T ss_pred             CCCChhHHHHHHHHHHCCCCeEEEECCCCHH
Confidence            47899999999999999999987 8876654

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=80.99  E-value=1.8  Score=29.68  Aligned_cols=53  Identities=11%  Similarity=0.010  Sum_probs=34.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc----C--CCCeEEEEcCCCHHHHHHHHHhcCCCC--CcEEEe
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA----Y--NVPISARNILEDPELKSAVKAFSHWPT--FPQIFI  135 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~----~--~v~~~~~di~~~~~~~~~l~~~~g~~t--~P~vfi  135 (169)
                      .+|+++...    + |+.|+.....|++    +  .+.|..+|++.++.+    .+..|-..  +|.+.+
T Consensus        24 ~pv~v~f~a----~-~~~c~~~~p~l~~~A~~~~gk~~f~~vd~d~~~~~----a~~~gi~~~~iPtl~i   84 (133)
T 2djk_A           24 IPLAYIFAE----T-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFGAH----AGNLNLKTDKFPAFAI   84 (133)
T ss_dssp             SCEEEEECS----C-SSSHHHHHHHHHHHHHSSTTTSEEEEECTTTTGGG----TTTTTCCSSSSSEEEE
T ss_pred             CCEEEEEec----C-hhhHHHHHHHHHHHHHHhCCeEEEEEEchHHhHHH----HHHcCCCcccCCEEEE
Confidence            455554432    4 9999987776643    3  367888998877664    33446666  998744

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=80.88  E-value=4.7  Score=30.01  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=22.4

Q ss_pred             cCC-eEEEeecCCCCCCCccHHHHHHHH-------hcCCCCeEEEEcC
Q 030914           73 ENP-VMLYMKGVPEFPQCGFSSLAVRVL-------GAYNVPISARNIL  112 (169)
Q Consensus        73 ~~~-Vvly~k~~~~~~~C~~c~~a~~~L-------~~~~v~~~~~di~  112 (169)
                      ..+ |+|+.-.    .+||.|......|       ...++.+..++++
T Consensus        58 gk~~vll~F~a----~~C~~C~~~~~~l~~l~~~~~~~~v~vv~Vs~d  101 (218)
T 3u5r_E           58 DSPALLVAFIS----NRCPFVVLIREALAKFAGDYAGQGLAVVAINSN  101 (218)
T ss_dssp             TCSEEEEEECC----SSCHHHHTTHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred             CCCeEEEEEEC----CCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            444 5665544    5999998655544       3345667777774

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=80.68  E-value=0.91  Score=27.41  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=25.1

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|++++++...|.+.|++|.. |+..+++
T Consensus         8 ~~~C~~C~~~~~~l~~~~i~~~~~di~~~~~   38 (75)
T 1r7h_A            8 KPACVQCTATKKALDRAGLAYNTVDISLDDE   38 (75)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCCEEEETTTCHH
T ss_pred             CCCChHHHHHHHHHHHcCCCcEEEECCCCHH
Confidence            47899999999999999999987 8776543

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=80.57  E-value=0.13  Score=35.30  Aligned_cols=34  Identities=6%  Similarity=-0.145  Sum_probs=26.4

Q ss_pred             hhhhccCCCCCCCCcchHHH-HHHHHhCC---CCccc-ccCCCc
Q 030914            6 SNLIFKGIASYPSARSSRIV-SGSLYHNG---MKYST-DVPNDP   44 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~-~~~l~~~g---~~~~s-~vl~d~   44 (169)
                      +++|.+     |.|+++.++ ..+|.+.+   ++|.. |+..++
T Consensus        27 Vvvf~~-----~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~   65 (118)
T 3c1r_A           27 IFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMK   65 (118)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGST
T ss_pred             EEEEEc-----CCCcCHHHHHHHHHHHcCCCCCCeEEEECccCC
Confidence            345555     889999999 99999999   77776 776553

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=80.04  E-value=2.6  Score=43.44  Aligned_cols=63  Identities=11%  Similarity=0.026  Sum_probs=46.1

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCC--HH-HHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILED--PE-LKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~--~~-~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.+|+|.+++-+|...|++|+.+.++..  +. ...++.+.+...++|.+..||..+.....+...
T Consensus         8 ~~s~~a~kVrl~L~e~Gl~ye~~~vd~~~~e~~~~~e~l~iNP~GkVPvLvDdg~vL~ES~AIl~Y   73 (2695)
T 4akg_A            8 KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (2695)
T ss_dssp             SSSGGGHHHHHHHHHTTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEESSSCEEESHHHHHHH
T ss_pred             CCChhHHHHHHHHHHcCCCcEEEEeCCCcccccCCHhHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence            5799999999999999999999888653  22 223344455678999998777777665544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	8e-32
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	4e-22
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	5e-22
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	2e-15
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	1e-14
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-13
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	6e-12
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-11
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	5e-11

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 8e-32
 Identities = 38/102 (37%), Positives = 62/102 (60%)

Query: 60  GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKS 119
           G S    ++    +  VML+MKG  +  +CGFS   + +L +  V     +ILED E++ 
Sbjct: 1   GSSGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQ 60

Query: 120 AVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLKG 161
            +K FS+WPT+PQ++++G+ +GG DI+  +  +GEL   LKG
Sbjct: 61  GLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 83.6 bits (206), Expect = 4e-22
 Identities = 22/103 (21%), Positives = 42/103 (40%), Gaps = 11/103 (10%)

Query: 64  KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-----ISARNILEDPE-L 117
           +  V   ++   V++++K     P C F      +L                   D   +
Sbjct: 2   QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56

Query: 118 KSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
           +  ++  +   T P++FI  E IGG   + +MH+ GEL  +L+
Sbjct: 57  QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 82.3 bits (203), Expect = 5e-22
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           V +Y K       C +   A  +L +  V      I  +   +  +   S   T PQIFI
Sbjct: 3   VEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFI 57

Query: 136 KGEFIGGSDIILNMHQSGELKEKLK 160
             + IGG D +  +   G L   LK
Sbjct: 58  DAQHIGGYDDLYALDARGGLDPLLK 82

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.1 bits (161), Expect = 2e-15
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 74  NPVMLY---MKGVPE-FPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWP- 128
           + + +Y   + G  E   Q    S   R+L    +     +I +D  L+  ++  +  P 
Sbjct: 2   SGLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPK 58

Query: 129 -TFPQIFIKGEFIGGSDIILNMHQSGELKEKLK 160
            T PQI     + G  ++ +   +   L+E LK
Sbjct: 59  ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFLK 91

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 63.0 bits (153), Expect = 1e-14
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 73  ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQ 132
           +  + ++ K     P C F + A ++L    +      +  D  +  +V+A S   T PQ
Sbjct: 4   QESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDATIV-SVRAVSGRTTVPQ 57

Query: 133 IFIKGEFIGGSDII 146
           +FI G+ IGGSD +
Sbjct: 58  VFIGGKHIGGSDDL 71

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 60.9 bits (147), Expect = 1e-13
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 12/85 (14%)

Query: 78  LYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPE----------LKSAVKAFSHW 127
           +Y        +CG    A R+L     P    NI+ +            L    +     
Sbjct: 4   VYGY-DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIG 62

Query: 128 PTFPQIFIK-GEFIGGSDIILNMHQ 151
            T PQ+F   G  IGG D +    +
Sbjct: 63  LTMPQVFAPDGSHIGGFDQLREYFK 87

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 56.2 bits (135), Expect = 6e-12
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           + LY K     P C   +   + L    +  +  +I  D E +  V A   +   P + +
Sbjct: 3   ITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-GYVQAPVVEV 56

Query: 136 KGEFIGGSDI 145
            GE   G   
Sbjct: 57  DGEHWSGFRP 66

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 55.8 bits (134), Expect = 1e-11
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-----ISARNILEDPELKSAVKAFSHWP-- 128
            +++ +       C +   A  +    +           +I  +   K  ++  +  P  
Sbjct: 3   TVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVE 57

Query: 129 TFPQIFIKGEFIGGSDIILNMHQ 151
           T PQIF+  + IGG        +
Sbjct: 58  TVPQIFVDQQHIGGYTDFAAWVK 80

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 53.9 bits (129), Expect = 5e-11
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 8/79 (10%)

Query: 76  VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI 135
           + +Y +       C       R +          N+   PE   A++    +   P +  
Sbjct: 3   ITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR-AQGFRQLPVVIA 56

Query: 136 KGEFIGG--SDIILNMHQS 152
                 G   D+I  +H +
Sbjct: 57  GDLSWSGFRPDMINRLHPA 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	100.0
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.95
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.95
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.87
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.83
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.82
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.82
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.82
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.15
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.1
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.0
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.96
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.9
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	98.5
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.48
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.48
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	98.48
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	98.45
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	98.4
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	98.4
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	98.36
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.33
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.29
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	98.19
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	98.19
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	98.14
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	98.14
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	98.09
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	98.09
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	98.09
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	98.08
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	98.03
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	98.02
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	98.02
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	98.01
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.79
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.79
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	97.72
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.67
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.57
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.56
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	97.55
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.42
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	97.39
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.38
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	97.31
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.28
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	97.27
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	97.22
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	97.1
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	97.06
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	97.03
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	96.85
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	96.84
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	96.7
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	96.53
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	96.49
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.48
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.45
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	96.32
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	96.31
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	96.26
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	96.2
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	96.01
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	95.94
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	95.88
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	95.76
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	95.51
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	95.46
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	95.46
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	95.27
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	94.98
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	94.83
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	94.78
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	94.71
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	94.54
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	94.52
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	94.49
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	94.36
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	94.25
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	94.23
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	94.14
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	93.86
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	93.83
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	93.66
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	93.48
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	93.34
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	92.67
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	92.56
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	92.54
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	92.37
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	92.3
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	92.07
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	92.07
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	91.59
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	91.42
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	91.3
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	90.27
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	90.08
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	90.0
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	89.84
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	89.32
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	89.13
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	89.08
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	88.93
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	88.51
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	88.21
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	86.86
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	85.62
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	83.24
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	82.89
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	82.15
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	81.86

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-34  Score=204.17  Aligned_cols=104  Identities=35%  Similarity=0.683  Sum_probs=99.4

Q ss_pred             HHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec
Q 030914           63 LKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG  142 (169)
Q Consensus        63 ~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG  142 (169)
                      ....|+.++++++||||+||||+.|+||||.+|+++|++++++|+++||+.+++.++++.+++||+|+|||||+|++|||
T Consensus         4 ~~~~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG   83 (109)
T d1wika_           4 GSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGG   83 (109)
T ss_dssp             SCCCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEEC
T ss_pred             HHHHHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCCeEEECCEEEcC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhcccHHHHHhcccccC
Q 030914          143 SDIILNMHQSGELKEKLKGIASNQ  166 (169)
Q Consensus       143 ~d~l~~~~~~g~L~~~L~~~~~~~  166 (169)
                      +|++++|+++|+|.++|++.+++.
T Consensus        84 ~ddl~~l~~~G~L~~lL~~~~~~~  107 (109)
T d1wika_          84 LDIVKELKDNGELLPILKGESGPS  107 (109)
T ss_dssp             HHHHHHHHHHTCSHHHHHTCCSCS
T ss_pred             HHHHHHHHHCCCHHHHHHhcCCCC
Confidence            999999999999999999887653

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=4.9e-29  Score=174.11  Aligned_cols=97  Identities=24%  Similarity=0.469  Sum_probs=86.7

Q ss_pred             HHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCC-----eEEEEcCCCH-HHHHHHHHhcCCCCCcEEEeCC
Q 030914           64 KEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-----ISARNILEDP-ELKSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        64 ~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~-----~~~~di~~~~-~~~~~l~~~~g~~t~P~vfi~g  137 (169)
                      +.+|++.+++++|+||++     ++||||.+|+++|++++++     |.++|+..+. ..++.+++.+|++|+|||||||
T Consensus         2 ~~~v~~~i~~~~Vviysk-----~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g   76 (105)
T d1ktea_           2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK   76 (105)
T ss_dssp             HHHHHHHCCTTCEEEEEC-----SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETT
T ss_pred             hhHHHHHhccCCEEEEEC-----CCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECC
Confidence            578999999999999999     7899999999999999987     4445555554 5677788999999999999999


Q ss_pred             eEeeccHHHHHHHhcccHHHHHhccccc
Q 030914          138 EFIGGSDIILNMHQSGELKEKLKGIASN  165 (169)
Q Consensus       138 ~~iGG~d~l~~~~~~g~L~~~L~~~~~~  165 (169)
                      ++|||+|++.+|+++|+|.++|+++|+.
T Consensus        77 ~~IGG~~el~~l~~~G~L~~~L~~~Ga~  104 (105)
T d1ktea_          77 ECIGGCTDLESMHKRGELLTRLQQVGAV  104 (105)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHHTCB
T ss_pred             EEEecHHHHHHHHHCCCHHHHHHHcCCC
Confidence            9999999999999999999999998875

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.95  E-value=3.8e-28  Score=162.14  Aligned_cols=81  Identities=28%  Similarity=0.405  Sum_probs=78.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHHhccc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMHQSGE  154 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~~~g~  154 (169)
                      .|+||++     ++||||.+|+++|+++||+|+++||+.+++.++++++.+|++|+|||||||++|||+|++.+++++|+
T Consensus         2 ~I~iys~-----~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g~   76 (82)
T d1fova_           2 NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGG   76 (82)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTC
T ss_pred             cEEEEeC-----CCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHHHcCC
Confidence            6999999     78999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 030914          155 LKEKLK  160 (169)
Q Consensus       155 L~~~L~  160 (169)
                      |+++|+
T Consensus        77 L~~lLk   82 (82)
T d1fova_          77 LDPLLK   82 (82)
T ss_dssp             SHHHHC
T ss_pred             HHHHhC
Confidence            999985

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.1e-23  Score=139.83  Aligned_cols=84  Identities=20%  Similarity=0.298  Sum_probs=77.9

Q ss_pred             CCeEEEeecCCCCCCCc------cHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCC--CCCcEEEeCCeEeeccHH
Q 030914           74 NPVMLYMKGVPEFPQCG------FSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHW--PTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~------~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~--~t~P~vfi~g~~iGG~d~  145 (169)
                      ..|+||+.+     .|+      +|.+++++|++++|+|+++||+.+++.++.+.+.+|+  +|+|||||||+||||+|+
T Consensus         2 ~~i~vy~ts-----~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~de   76 (93)
T d1t1va_           2 SGLRVYSTS-----VTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYEL   76 (93)
T ss_dssp             CCEEEEECS-----SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHH
T ss_pred             CCEEEEEcc-----CcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHH
Confidence            579999985     684      8999999999999999999999999999999999875  599999999999999999


Q ss_pred             HHHHHhcccHHHHHhcc
Q 030914          146 ILNMHQSGELKEKLKGI  162 (169)
Q Consensus       146 l~~~~~~g~L~~~L~~~  162 (169)
                      +.+++++|+|.++|+-+
T Consensus        77 l~~~~e~g~L~~~lk~a   93 (93)
T d1t1va_          77 FVEAVEQDTLQEFLKLA   93 (93)
T ss_dssp             HHHHHHTTCHHHHTTCC
T ss_pred             HHHHHHCCCHHHHhccC
Confidence            99999999999999753

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=9.5e-23  Score=133.12  Aligned_cols=70  Identities=30%  Similarity=0.524  Sum_probs=63.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      +.+|+||++     ++||||.+|+++|+++|++|+++||+.++.. +.+.+.+|++|+|||||||++|||+|+|.+
T Consensus         4 ~~~I~iYs~-----~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~~-~~~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           4 QESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDATI-VSVRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTCCH-HHHHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             cCcEEEEEC-----CCCHHHHHHHHHHHHcCCCeEEEEccCcHHH-HHHHHHhCCccCCEEEECCEEEEChHHHhh
Confidence            457999999     7999999999999999999999999988764 567788999999999999999999999875

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.83  E-value=1.1e-20  Score=123.04  Aligned_cols=69  Identities=23%  Similarity=0.353  Sum_probs=62.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccH--HHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSD--IILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d--~l~~~  149 (169)
                      +|+||++     ++||+|.+|+++|+++|++|+++||+.+++.++.++.. |.+|+|+|||||++|||++  .+.+|
T Consensus         2 ~v~iYt~-----~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~-g~~tvP~i~i~g~~igGf~~d~l~~L   72 (74)
T d1r7ha_           2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQL   72 (74)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT-TCBCCCEEEETTEEEESCCHHHHHHH
T ss_pred             EEEEEeC-----CCChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHh-CCCCcCEEEECCEEEeCCCHhHHHHh
Confidence            5899999     79999999999999999999999999999998888664 8899999999999999984  44443

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.6e-21  Score=130.46  Aligned_cols=73  Identities=16%  Similarity=0.245  Sum_probs=64.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCC--CCCcEEEeCCeEeeccHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHW--PTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~--~t~P~vfi~g~~iGG~d~l~  147 (169)
                      +|+||++     ++||||.+|+++|+++|     ++|+++|++.+++.++++.+.+++  +|+|||||||++|||+|++.
T Consensus         2 kvviysk-----~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el~   76 (85)
T d1egoa_           2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFA   76 (85)
T ss_dssp             EEEEECC-----TTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHH
T ss_pred             EEEEEeC-----CCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHHHH
Confidence            6899999     78999999999999865     778888888888888888888754  69999999999999999999


Q ss_pred             HHHhc
Q 030914          148 NMHQS  152 (169)
Q Consensus       148 ~~~~~  152 (169)
                      ++.++
T Consensus        77 ~~~~~   81 (85)
T d1egoa_          77 AWVKE   81 (85)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.82  E-value=2.2e-20  Score=125.53  Aligned_cols=74  Identities=27%  Similarity=0.368  Sum_probs=59.8

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC-----CHHHHHHHHHh-----cCCCCCcEEEe-CCeEeeccH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE-----DPELKSAVKAF-----SHWPTFPQIFI-KGEFIGGSD  144 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~-----~~~~~~~l~~~-----~g~~t~P~vfi-~g~~iGG~d  144 (169)
                      +.||++. ++.+.||||.+|+++|+++|++|+++++..     +...++++.+.     +|++|+||||| ||+||||+|
T Consensus         2 ~~Iy~~~-~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~d   80 (87)
T d1abaa_           2 FKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD   80 (87)
T ss_dssp             EEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred             EEEEEeC-CCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHH
Confidence            3578763 234789999999999999999999999975     34455555443     57899999999 599999999


Q ss_pred             HHHHHH
Q 030914          145 IILNMH  150 (169)
Q Consensus       145 ~l~~~~  150 (169)
                      +|++++
T Consensus        81 el~e~~   86 (87)
T d1abaa_          81 QLREYF   86 (87)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999875

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=2.8e-20  Score=121.84  Aligned_cols=70  Identities=19%  Similarity=0.314  Sum_probs=63.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeecc--HHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS--DIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~--d~l~~~~  150 (169)
                      +|+||++     ++||||.+++++|+++||+|+++||+.+++.++.++. .|.+++|+|+|||++|||+  |.+.+|+
T Consensus         2 ki~iYs~-----~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~~~~i~Gf~~d~i~~L~   73 (76)
T d1h75a_           2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRPDMINRLH   73 (76)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCHHHHGGGS
T ss_pred             EEEEEeC-----CCCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-cCCCCCCEEEECCEEEECCCHHHHHHHh
Confidence            5899999     7999999999999999999999999999999888865 6899999999999999998  6565553

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.4e-11  Score=83.67  Aligned_cols=77  Identities=17%  Similarity=0.305  Sum_probs=59.3

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe--eccHHHHHHHh
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI--GGSDIILNMHQ  151 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i--GG~d~l~~~~~  151 (169)
                      ..|++|++     ++||+|++++.+|++...+|...++..|.+..++|.+..+.. +|+|||||+.+  |.+|       
T Consensus        17 p~i~lft~-----~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~idg~~~~~g~~d-------   83 (100)
T d1wjka_          17 PVLTLFTK-----APCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD-IPVFHLNGQFLMMHRVN-------   83 (100)
T ss_dssp             CEEEEEEC-----SSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEEESSSEEEESSCC-------
T ss_pred             CEEEEEEC-----CCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc-CCceeecCceEEeCCCC-------
Confidence            46889998     899999999999999999987776665555556677777766 99999999765  3343       


Q ss_pred             cccHHHHHhccc
Q 030914          152 SGELKEKLKGIA  163 (169)
Q Consensus       152 ~g~L~~~L~~~~  163 (169)
                      ..+|++.|+...
T Consensus        84 ~~~L~~~L~~l~   95 (100)
T d1wjka_          84 TSKLEKQLRKLS   95 (100)
T ss_dssp             HHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHh
Confidence            346777776654

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.10  E-value=1.4e-10  Score=77.80  Aligned_cols=83  Identities=17%  Similarity=0.137  Sum_probs=61.3

Q ss_pred             ccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           61 LSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      +++.+.|+.+-....+++|+.     +|||+|+.+..+|++.     +|.+..+|++.++++.    +..|..++|.+|+
T Consensus         4 ~~~~e~ik~l~~~~~i~~F~s-----~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~----~~~~I~~vPt~~~   74 (96)
T d1hyua4           4 QSLLEQIRDIDGDFEFETYYS-----LSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEI----TERNVMGVPAVFV   74 (96)
T ss_dssp             HHHHHHHHHCCSCEEEEEEEC-----TTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHH----HHTTCCSSSEEEE
T ss_pred             HHHHHHHHhcCCCeEEEEEEC-----CCCcchHHHHHHHHHHHHhCCceEEEEEecccchHHH----hhcccccccEEEE
Confidence            456667776656667888987     8999999999988754     4778889999887654    3447889999999


Q ss_pred             CCeEee-cc---HHHHHHHhc
Q 030914          136 KGEFIG-GS---DIILNMHQS  152 (169)
Q Consensus       136 ~g~~iG-G~---d~l~~~~~~  152 (169)
                      ||+.++ |.   +++.+..++
T Consensus        75 ng~~~~~G~~~~~~l~~~les   95 (96)
T d1hyua4          75 NGKEFGQGRMTLTEIVAKVDT   95 (96)
T ss_dssp             TTEEEEESCCCHHHHHHHHCC
T ss_pred             CCEEEEecCCCHHHHHHHHhC
Confidence            999775 43   444444443

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=1.9e-11  Score=84.39  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             hhhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecC
Q 030914            5 LSNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGV   83 (169)
Q Consensus         5 ~~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~   83 (169)
                      -+++||||||+.|.|+||.++.++|.++|++|.. ++..+++.++.+...+.|+|.+                .||..|.
T Consensus        16 ~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvP----------------qIFi~g~   79 (109)
T d1wika_          16 SVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYP----------------QLYVRGD   79 (109)
T ss_dssp             SEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSC----------------EEECSSS
T ss_pred             CEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCC----------------eEEECCE
Confidence            3789999999999999999999999999999998 9988877766666666655432                2455542


Q ss_pred             CCCCCCccHHHHHHHHhc
Q 030914           84 PEFPQCGFSSLAVRVLGA  101 (169)
Q Consensus        84 ~~~~~C~~c~~a~~~L~~  101 (169)
                          .=+-|..+.+++++
T Consensus        80 ----~IGG~ddl~~l~~~   93 (109)
T d1wika_          80 ----LVGGLDIVKELKDN   93 (109)
T ss_dssp             ----EEECHHHHHHHHHH
T ss_pred             ----EEcCHHHHHHHHHC
Confidence                23456777766654

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.96  E-value=1.3e-09  Score=70.17  Aligned_cols=69  Identities=22%  Similarity=0.179  Sum_probs=51.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhc-CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeec--cHHHHHHHhc
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGA-YNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGG--SDIILNMHQS  152 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~-~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG--~d~l~~~~~~  152 (169)
                      |+||++     ++|+.|.+|+++|.+ .++.++++||+.|+++++..    |. .+|.|.++|...-+  +|       .
T Consensus         2 ltLyt~-----~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~l~~~y----~~-~IPVl~~~~~~~l~w~fd-------~   64 (75)
T d1ttza_           2 LTLYQR-----DDCHLCDQAVEALAQARAGAFFSVFIDDDAALESAY----GL-RVPVLRDPMGRELDWPFD-------A   64 (75)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHHH----TT-TCSEEECTTCCEEESCCC-------H
T ss_pred             EEEECC-----CCccHHHHHHHHHHhccCCcEEEEEccCCHHHHHHh----CC-eeeEEEECCeeEEcCccC-------H
Confidence            789999     899999999997754 68999999999998765443    43 48999998754444  44       3


Q ss_pred             ccHHHHHhc
Q 030914          153 GELKEKLKG  161 (169)
Q Consensus       153 g~L~~~L~~  161 (169)
                      .+|+++|.+
T Consensus        65 ~~l~~~L~~   73 (75)
T d1ttza_          65 PRLRAWLDA   73 (75)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            445555554

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=3e-09  Score=68.21  Aligned_cols=67  Identities=18%  Similarity=0.303  Sum_probs=56.2

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNMH  150 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~~  150 (169)
                      -||+.     +.||||.+|+-+|..+|++|+.+.+..+.  .+++.+.++..++|++.. ||+.+.....+.+..
T Consensus         2 kLY~~-----~~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yL   69 (75)
T d1g7oa2           2 KLYIY-----DHCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMVGQKQVPILQKDDSRYMPESMDIVHYV   69 (75)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHHSSSCCCEEEETTTEEEECHHHHHHHH
T ss_pred             EEEcc-----CCCCchHHHHHHHHHhCCCcccccccccc--hHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHH
Confidence            37877     68999999999999999999999987553  356778899999999997 678899887777654

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.9e-07  Score=61.15  Aligned_cols=75  Identities=17%  Similarity=0.206  Sum_probs=60.0

Q ss_pred             CeEEEeecCCC---CCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPE---FPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~---~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      .+.||.|...+   ...||||++++-+|.+.||+|+.+.|+... ..+.+++.+...++|.+..||..|.....+.+..
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP~~~vPvL~~~~~~i~eS~~I~~YL   79 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFL   79 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCTTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHhccCceeEEEEcccccccHHHHHHHH
Confidence            46788776542   346999999999999999999988886532 2356888899999999999999998877776653

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.48  E-value=2.7e-07  Score=59.46  Aligned_cols=70  Identities=13%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC-CCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH-WPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g-~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.+.||..     ..||||++++-+|..+|++|+.+.+.....- +.+.+..+ ...+|.+..||..|.....+.+.
T Consensus         2 ~~mkLy~~-----~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~-~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~Y   72 (83)
T d1gwca2           2 DDLKLLGA-----WPSPFVTRVKLALALKGLSYEDVEEDLYKKS-ELLLKSNPVHKKIPVLIHNGAPVCESMIILQY   72 (83)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSCC-HHHHHHSTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CeEEEEec-----CCChHHHHHHHHHHHCCCCeEEEEEeccchh-HHHHHHHhccCCCceeecCCceEcCHHHHHHH
Confidence            45789987     5799999999999999999999988643222 23444444 56789999999999887776665

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.48  E-value=5.4e-07  Score=58.22  Aligned_cols=68  Identities=15%  Similarity=0.150  Sum_probs=57.3

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC-CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE-DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~-~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+|..     +.||+|+++.-+|++.|++|+.+.|+. ..+.++++.+.+...++|.+..||..+.....+.+.
T Consensus         2 ~LY~~-----~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           2 DYYYS-----LISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEECC-----CCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhhccCCCEEEEccceeEcHHHHHHH
Confidence            47877     789999999999999999999998874 445678888889899999999999988876666554

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.48  E-value=2.7e-07  Score=60.07  Aligned_cols=72  Identities=13%  Similarity=0.067  Sum_probs=57.8

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcC-CCCCcEEEeCCeEeeccHHHHHHH
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSH-WPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g-~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ..+++||..     ..||||++++-+|..+|++|+.+.++.... .+++.+.+. ..++|.+..||..|.....+.+..
T Consensus         3 ~~~l~Ly~~-----~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~-~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL   75 (84)
T d1oyja2           3 EKELVLLDF-----WVSPFGQRCRIAMAEKGLEFEYREEDLGNK-SDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYL   75 (84)
T ss_dssp             SCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCceEEEcC-----CCChHHHHHHHHHHHcCCCcEEEEEccCcC-CHHHHhhCCCcCcccEEEECCceEEcHHHHHHHH
Confidence            568999987     679999999999999999999998865322 345666665 478999999999888877666653

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.45  E-value=5.4e-07  Score=57.86  Aligned_cols=71  Identities=14%  Similarity=0.047  Sum_probs=58.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      ++.||..     +.||+|.+++-+|+..|++|+.+.|+.  .+....++.+.+...++|.+..||..+.+...+....
T Consensus         1 ~m~Ly~~-----~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL   73 (80)
T d1e6ba2           1 KLKLYSY-----WRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYL   73 (80)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCccccCCEEEECCEEEECHHHHHHHH
Confidence            4678877     789999999999999999999887753  4445567778888999999999999888777666553

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=98.40  E-value=1.6e-07  Score=64.26  Aligned_cols=68  Identities=18%  Similarity=0.295  Sum_probs=53.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC----CeEeeccHHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK----GEFIGGSDIILNMH  150 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~----g~~iGG~d~l~~~~  150 (169)
                      +++||+.     +.||||.+|+.+|..+|++|+.++++....  +. ...++..++|.+.+.    |+.++....+.+..
T Consensus         2 ~i~LY~~-----~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~-~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL   73 (113)
T d1z9ha2           2 QLTLYQY-----KTCPFCSKVRAFLDFHALPYQVVEVNPVLR--AE-IKFSSYRKVPILVAQEGESSQQLNDSSVIISAL   73 (113)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTC--GG-GTTCSCCSSCEEEEEETTEEEEECSHHHHHHHH
T ss_pred             EEEEEcC-----CCChHHHHHHHHHHHcCCeeEEeccCcccc--hh-hccCccccccccccccCCCceEeecHHHHHHHH
Confidence            4789988     689999999999999999999999864322  12 255788999999753    47888877766643

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3e-07  Score=61.50  Aligned_cols=73  Identities=19%  Similarity=0.141  Sum_probs=58.0

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNMH  150 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~~  150 (169)
                      ....+.||+.     +.||||++++-+|.+.||+|+.+.|+... ..+++.+++...++|.+..+ |..|.....+.+..
T Consensus        16 ~~~~~~Ly~~-----~~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL   89 (98)
T d1eema2          16 PEGSIRIYSM-----RFCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYL   89 (98)
T ss_dssp             CTTCEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHH
T ss_pred             CCCcEEEEcC-----CCChHHHHHHHHHHHhCCCCEEEEecccC-CcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHH
Confidence            3457999988     78999999999999999999988886422 23457778888999999885 68888776666553

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=98.36  E-value=2.1e-07  Score=60.06  Aligned_cols=70  Identities=16%  Similarity=0.130  Sum_probs=57.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.||+|++++-+|.+.|++|+.+.|+-  ++....++.+.+...++|.+..||..|.....+...
T Consensus         2 pm~Ly~~-----~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~Y   73 (81)
T d1aw9a2           2 PLKLYGM-----PLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRY   73 (81)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEeC-----CCChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhhcCeeEEEEECCcEEECHHHHHHH
Confidence            5789977     789999999999999999999988753  333445677788888999999999988877666554

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.33  E-value=1.4e-07  Score=61.04  Aligned_cols=59  Identities=22%  Similarity=0.468  Sum_probs=46.0

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCe--Eeec
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGE--FIGG  142 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~--~iGG  142 (169)
                      .|++|+.     |||++|+++...|++.      ++.+..+|++.++++    ....|-.++|.++++|+  ++|.
T Consensus         4 ~v~~F~a-----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~V~~~Pt~~~~~~~~~~G~   70 (85)
T d1nhoa_           4 NIEVFTS-----PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDREK----AIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CEEEESC-----SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGGG----GGGTCSSCSSEEEETTTEEEECS
T ss_pred             EEEEEEC-----CCCcchHHHHHHHhhhcccccccccccccccccchhh----HHhcCceEeCEEEECCcEEEEcC
Confidence            4778888     8999999999877542      377888899888764    44557899999999885  5665

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=2e-06  Score=56.52  Aligned_cols=71  Identities=11%  Similarity=-0.032  Sum_probs=56.5

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEe---CCeEeeccHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFI---KGEFIGGSDIILN  148 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi---~g~~iGG~d~l~~  148 (169)
                      ..++||+.     +.||+|.+|+-+|+++|++|+.+.|+-  ......++.+.+...++|.+..   ||..|.....+..
T Consensus         4 ~~~tLY~~-----~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~~   78 (92)
T d1k0da2           4 EGYTLFSH-----RSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAILL   78 (92)
T ss_dssp             SSEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHH
T ss_pred             CceEEeeC-----CCCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHHH
Confidence            45889988     789999999999999999999887764  3344567888888999999987   6777766555554


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        79 Y   79 (92)
T d1k0da2          79 H   79 (92)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=98.19  E-value=4.5e-06  Score=54.01  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .++||..     +.|++|++++-+|++.|++|+.+.|+-  ++....++.+.+...++|.+-.||..|.....+...
T Consensus         1 t~iLY~~-----~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           1 TTVLYYL-----PASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             CEEEEcC-----CCCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHhcCCCCEEEEcccceecHHHHHHH
Confidence            3689988     789999999999999999999888763  455667888888888999999999888776665554

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=98.19  E-value=3e-06  Score=54.28  Aligned_cols=70  Identities=11%  Similarity=-0.021  Sum_probs=57.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||..     +.|++|++++-+|++.|++|+.+.|+-  .+....++.+.+...++|.+..||..+.....+...
T Consensus         2 p~~Ly~~-----~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~Y   73 (80)
T d1axda2           2 PMKLYGA-----VMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKY   73 (80)
T ss_dssp             CEEEESC-----TTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEEC-----CCChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhccccCCEEEECCEEEECHHHHHHH
Confidence            6789988     789999999999999999999887753  344456778888889999999999877776655554

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.4e-06  Score=52.64  Aligned_cols=69  Identities=12%  Similarity=0.081  Sum_probs=56.5

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|+++.-+|.+.|++|+.+.|+.  +.....++.+.+....+|.+..||..+-....+...
T Consensus         3 m~LY~~-----~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~y   73 (79)
T d1ljra2           3 LELFLD-----LVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIY   73 (79)
T ss_dssp             CEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEeeC-----CCChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhhhcceeEEEeCCcEEEcHHHHHHH
Confidence            568877     789999999999999999999888753  444556788888899999999999888776655544

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.14  E-value=4.4e-06  Score=56.74  Aligned_cols=68  Identities=15%  Similarity=0.191  Sum_probs=47.8

Q ss_pred             HHHHHHHhhcCC-eEE-EeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--E
Q 030914           64 KEVVEQDVKENP-VML-YMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--F  134 (169)
Q Consensus        64 ~~~i~~~~~~~~-Vvl-y~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--f  134 (169)
                      .+.++++++.++ |++ |..     +||+.|+.+...|++.     ++.+-.+|++.++++.+    ..|..++|.+  |
T Consensus        16 ~~~~~~~~~~~~~vvv~F~a-----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l~~----~~~V~~~Pt~~~~   86 (113)
T d1r26a_          16 VEQFRNIMSEDILTVAWFTA-----VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEIVS----KCRVLQLPTFIIA   86 (113)
T ss_dssp             HHHHHHHHHSSSCEEEEEEC-----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTTCCSSSEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEEEC-----CCCccchhhceeccccccccccccccccccccchhhHH----HccccCCCEEEEE
Confidence            345666666665 445 444     7999999999888553     67888999998877544    4466777776  5


Q ss_pred             eCCeEe
Q 030914          135 IKGEFI  140 (169)
Q Consensus       135 i~g~~i  140 (169)
                      -+|+.+
T Consensus        87 ~~G~~v   92 (113)
T d1r26a_          87 RSGKML   92 (113)
T ss_dssp             ETTEEE
T ss_pred             ECCEEE
Confidence            688644

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1e-05  Score=51.96  Aligned_cols=69  Identities=17%  Similarity=0.126  Sum_probs=55.7

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC----CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE----DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNMH  150 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~----~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~~  150 (169)
                      +||.-     +.|++|.+++-+|.+.|++|+.+.|+.    .+....++.+.+...++|.+..||..|.....+....
T Consensus         3 iLY~~-----~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL   75 (83)
T d1fw1a2           3 ILYSY-----FRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYL   75 (83)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             EEEcC-----CCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEECCEEEecHHHHHHHH
Confidence            68877     789999999999999999999887653    2334467778888899999999999888766655543

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=98.09  E-value=5.3e-06  Score=56.09  Aligned_cols=91  Identities=12%  Similarity=0.170  Sum_probs=58.2

Q ss_pred             ccHHHHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           61 LSLKEVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        61 ~~~~~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      ++..+.+.+...++ +|+|+..+    +||++|+.....|++.      .+.+-.+|++.++++.+.+    |-..+|.+
T Consensus        11 ~~fd~~l~~~~~~~k~vvv~f~a----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~~~----~v~~~Pt~   82 (112)
T d1ep7a_          11 AAWDAQLAKGKEEHKPIVVDFTA----TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAA----GITAMPTF   82 (112)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHH----TCCBSSEE
T ss_pred             HHHHHHHHHHhhcCCeEEEEEEc----CCcCCCcccchhhhhhhhcccceEEEEEeeccccccccccc----cccCCCEE
Confidence            35566777776654 45554443    7999999988877433      3778889998887654443    56677775


Q ss_pred             --EeCCeEeeccHHHHHHHhcccHHHHHhccc
Q 030914          134 --FIKGEFIGGSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       134 --fi~g~~iGG~d~l~~~~~~g~L~~~L~~~~  163 (169)
                        |-+|+.+..+.-.    ...+|+++|+++.
T Consensus        83 ~~~~~G~~v~~~~G~----~~~~l~~~i~k~~  110 (112)
T d1ep7a_          83 HVYKDGVKADDLVGA----SQDKLKALVAKHA  110 (112)
T ss_dssp             EEEETTEEEEEEESC----CHHHHHHHHHHHH
T ss_pred             EEEECCEEEEEEeCc----CHHHHHHHHHHHh
Confidence              5588765432110    1245777776654

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.09  E-value=1.1e-06  Score=58.61  Aligned_cols=56  Identities=25%  Similarity=0.465  Sum_probs=38.9

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC----------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY----------NVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~----------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      |++|+.     +|||+|++++..+++.          .|.+..+|++.++++    .+..|-.++|++++  +|+.+
T Consensus        19 i~~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~l----~~~~~V~~vPTi~i~~~G~~~   86 (107)
T d1a8la2          19 ILVFVT-----PTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPEW----ADQYNVMAVPKIVIQVNGEDR   86 (107)
T ss_dssp             EEEEEC-----SSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHH----HHHTTCCSSCEEEEEETTEEE
T ss_pred             EEEEEc-----CccccchhhChhHHhhhhhhhhccCCcEEEEEecccccccc----ccccccccceEEEEEeCCeEE
Confidence            445776     8999999999887543          356677888777764    44456777888755  56533

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=98.08  E-value=3.8e-06  Score=56.81  Aligned_cols=92  Identities=12%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             cccHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           60 GLSLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      .++.++.+++....++ |+|+..+    +||++|+.+...|++.     ++.+-.+|++.++++...+    +-..+|.+
T Consensus        12 ~e~~~~~l~~~~~~~k~vvv~F~a----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~----~I~~~Pt~   83 (113)
T d1ti3a_          12 VDTWKEHFEKGKGSQKLIVVDFTA----SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW----NVEAMPTF   83 (113)
T ss_dssp             HHHHHHHHHHHTTSSSEEEEEEEC----SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHH----HCSSTTEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEEEEc----CccccchhhhhhhhhhhccCCCceEEeeeeeccccccccC----eecccceE
Confidence            3456777888877665 4443333    7999999988777533     4557788888888765444    46677776


Q ss_pred             --EeCCeEeeccHHHHHHHhcccHHHHHhccc
Q 030914          134 --FIKGEFIGGSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       134 --fi~g~~iGG~d~l~~~~~~g~L~~~L~~~~  163 (169)
                        |-||+.++-..-   . ...+|.++|+++.
T Consensus        84 ~~~k~G~~v~~~~G---~-~~~~l~~~i~k~a  111 (113)
T d1ti3a_          84 IFLKDGKLVDKTVG---A-DKDGLPTLVAKHA  111 (113)
T ss_dssp             EEEETTEEEEEEEC---C-CTTHHHHHHHHHH
T ss_pred             EEEECCEEEEEEcC---C-CHHHHHHHHHHHh
Confidence              568875543211   0 1245777777654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.03  E-value=1.1e-05  Score=53.46  Aligned_cols=85  Identities=12%  Similarity=0.191  Sum_probs=55.1

Q ss_pred             HHHHHHhhcCC-eEE-EeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--Ee
Q 030914           65 EVVEQDVKENP-VML-YMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FI  135 (169)
Q Consensus        65 ~~i~~~~~~~~-Vvl-y~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi  135 (169)
                      +.+++++++++ |++ |..     +||+.|+.+...|++.     ++.+..+|++.++++.    +..+-..+|.+  |.
T Consensus         9 ~~f~~~i~~~~~vvv~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~~----~~~~V~~~Pt~i~~k   79 (103)
T d1syra_           9 AEFDSIISQNELVIVDFFA-----EWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVT----EKENITSMPTFKVYK   79 (103)
T ss_dssp             HHHHHHHHHCSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHHH----HHTTCCSSSEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEeC-----CcccCcccccccchhhhhcccceEEEeeccccCccee----eeeeeecceEEEEEE
Confidence            44555565555 444 555     7999999988877543     4667888998887653    34477889985  56


Q ss_pred             CCeEeeccHHHHHHHhcccHHHHHhcc
Q 030914          136 KGEFIGGSDIILNMHQSGELKEKLKGI  162 (169)
Q Consensus       136 ~g~~iGG~d~l~~~~~~g~L~~~L~~~  162 (169)
                      +|+.++.+.-.    ...+|.++++++
T Consensus        80 ~G~~v~~~~G~----~~~~l~~~i~k~  102 (103)
T d1syra_          80 NGSSVDTLLGA----NDSALKQLIEKY  102 (103)
T ss_dssp             TTEEEEEEESC----CHHHHHHHHHTT
T ss_pred             CCEEEEEEeCc----CHHHHHHHHHhh
Confidence            99866533210    123577777664

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=98.02  E-value=1.4e-05  Score=51.55  Aligned_cols=68  Identities=13%  Similarity=0.073  Sum_probs=54.6

Q ss_pred             EEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           77 MLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        77 vly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      .+|..     +.|++|++++-+|.+.|++|+.+.|+-  ++....++.+.+...++|.+..||..|-....+.+.
T Consensus         2 kLY~~-----~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEcC-----CCCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhccccCCEEEECCEEEEcHHHHHHH
Confidence            47877     789999999999999999999988863  344556777889899999999888877765555443

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.02  E-value=5.6e-06  Score=53.42  Aligned_cols=69  Identities=10%  Similarity=0.009  Sum_probs=55.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC--CHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE--DPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~--~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||..     +.||+|+++.-+|.+.|++|+.+.|+-  ++...+++.+.+...++|.+..||..|.....+.+.
T Consensus         2 ~kLY~~-----~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGH-----PASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeC-----CCChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhhcCcceEEEECCcEEecHHHHHHH
Confidence            468877     789999999999999999999888763  334445677788788999999999888766555554

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.01  E-value=2.3e-05  Score=52.89  Aligned_cols=73  Identities=12%  Similarity=0.190  Sum_probs=51.0

Q ss_pred             cccHHHHHHHHhhcCCeE-E-EeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914           60 GLSLKEVVEQDVKENPVM-L-YMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQ  132 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vv-l-y~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~  132 (169)
                      .++.++.+.+..+.++++ | |..     +||+.|+.+...|++.     ++.+..+|++.++++..    ..|-.++|.
T Consensus        14 ~~~~~~~~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~----~~~V~~~Pt   84 (114)
T d1xfla_          14 VETWNEQLQKANESKTLVVVDFTA-----SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVAS----DWAIQAMPT   84 (114)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHH----HTTCCSSSE
T ss_pred             HHHHHHHHHHhhccCCeEEEEEEc-----CCCCCccccccchhhhcccccccceeEEEeeeceeecc----ccceeeeEE
Confidence            345677788877776643 4 555     7999999988877543     46677888888877543    346678887


Q ss_pred             E--EeCCeEee
Q 030914          133 I--FIKGEFIG  141 (169)
Q Consensus       133 v--fi~g~~iG  141 (169)
                      +  |-+|+.++
T Consensus        85 ~~~~~~G~~v~   95 (114)
T d1xfla_          85 FMFLKEGKILD   95 (114)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCEEEE
Confidence            6  55887653

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.79  E-value=6.8e-05  Score=50.41  Aligned_cols=73  Identities=14%  Similarity=0.159  Sum_probs=47.5

Q ss_pred             HHHHHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHh----cCCCCeEEEEcCCCH--HHHHHHHHhcCCCCCcEEEe--
Q 030914           65 EVVEQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLG----AYNVPISARNILEDP--ELKSAVKAFSHWPTFPQIFI--  135 (169)
Q Consensus        65 ~~i~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~v~~~~~di~~~~--~~~~~l~~~~g~~t~P~vfi--  135 (169)
                      +.+++.+..+ ++++|...    +|||+|++....|.    +.+.+...++++...  +....+.+..|..++|.+++  
T Consensus        17 ~~~~~~i~~~~~~~v~f~~----~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~   92 (115)
T d1zmaa1          17 VRAQEALDKKETATFFIGR----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT   92 (115)
T ss_dssp             HHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred             HHHHHHHhcCCCEEEEEcC----CCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEE
Confidence            4556665544 56666553    89999999888774    446666777886533  33334555567889999844  


Q ss_pred             CCeEee
Q 030914          136 KGEFIG  141 (169)
Q Consensus       136 ~g~~iG  141 (169)
                      +|+.+.
T Consensus        93 ~gk~~~   98 (115)
T d1zmaa1          93 DGQINV   98 (115)
T ss_dssp             TTEEEE
T ss_pred             CCEEEE
Confidence            676443

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=4.5e-06  Score=53.36  Aligned_cols=60  Identities=30%  Similarity=0.507  Sum_probs=41.3

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCC--eEeecc
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQIFIKG--EFIGGS  143 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g--~~iGG~  143 (169)
                      .|++|+.     +||++|+.+...+++    .+  +.+..+|.+.++++    .+..|-.++|.+++++  +++|+.
T Consensus         5 ~v~~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~l----a~~~~V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           5 KIELFTS-----PMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEYGIMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEEC-----CCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTSTTTCCSSEEEETTEEECCSSS
T ss_pred             EEEEEEC-----CCCcChHhhhhhccccccccccccccccccccccccc----cccCCceEeeEEEEECCcEEECCC
Confidence            3566777     799999998887754    33  44566777766654    3445778899998865  566653

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=97.72  E-value=2.6e-05  Score=51.84  Aligned_cols=60  Identities=15%  Similarity=0.285  Sum_probs=42.2

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iG  141 (169)
                      .+|+|+...    +||++|+++...|++.    +  +.+-.+|++.++++.    +..+-.++|.+++  +|+.++
T Consensus        21 ~~vlv~f~a----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l~----~~~~I~~~Pt~~~~~~g~~v~   88 (108)
T d1thxa_          21 QPVLVYFWA----SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTV----KKYKVEGVPALRLVKGEQILD   88 (108)
T ss_dssp             SCEEEEEEC----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHHH----HHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC----CCCCCccccchHHHHHHHhcCCcceeceecccccHHHH----HHhcccCCCEEEEEECCEEEE
Confidence            346554332    7999999999888543    2  567788998887754    3446788998855  887554

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=2.2e-05  Score=53.46  Aligned_cols=35  Identities=34%  Similarity=0.592  Sum_probs=32.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      |.+|..     |.|.-|++|+++|++.|++|+.+|+..++
T Consensus         2 i~ly~~-----~~C~~~rka~~~L~~~~i~~~~~d~~~~p   36 (114)
T d1z3ea1           2 VTLYTS-----PSCTSCRKARAWLEEHEIPFVERNIFSEP   36 (114)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEETTTSC
T ss_pred             EEEEcC-----CCCHHHHHHHHHHHHCCCCeEEEeeeccC
Confidence            568988     89999999999999999999999998865

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=1.4e-05  Score=54.45  Aligned_cols=34  Identities=18%  Similarity=0.134  Sum_probs=31.5

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCC
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILE  113 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~  113 (169)
                      .++||+.     |.|.-|++|+++|++.|++|+.+|+..
T Consensus         1 t~~iY~~-----p~Cs~srka~~~L~~~~i~~~~idy~k   34 (114)
T d1rw1a_           1 TYVLYGI-----KACDTMKKARTWLDEHKVAYDFHDYKA   34 (114)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CEEEEEC-----CCChHHHHHHHHHHHcCCCeEEEEccc
Confidence            4789988     899999999999999999999999965

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00023  Score=47.34  Aligned_cols=72  Identities=7%  Similarity=0.084  Sum_probs=47.0

Q ss_pred             ccHHHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914           61 LSLKEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI-  133 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-  133 (169)
                      ++.++.+... ....|+| |+.     +||+.|++....|++.     ++.|-.+|++.++++.+    ..|-..+|.+ 
T Consensus        10 ~~f~~~l~~~-~~klvvv~F~a-----~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~~----~~~v~~~Pt~~   79 (107)
T d1gh2a_          10 PDFQPELSGA-GSRLAVVKFTM-----RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAA----TNNISATPTFQ   79 (107)
T ss_dssp             GGHHHHHHHT-TTSCEEEEEEC-----SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHHH----HTTCCSSSEEE
T ss_pred             HHHHHHHHhC-CCCEEEEEEEC-----CCCCCccccchhhhccccccccccccccccccchhhhh----hcCceeceEEE
Confidence            3455555432 1223555 555     7999999988877432     57788899998877644    3356677765 


Q ss_pred             -EeCCeEeec
Q 030914          134 -FIKGEFIGG  142 (169)
Q Consensus       134 -fi~g~~iGG  142 (169)
                       |-+|+.|+.
T Consensus        80 ~~~~G~~v~~   89 (107)
T d1gh2a_          80 FFRNKVRIDQ   89 (107)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence             668886654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=97.55  E-value=0.00011  Score=48.32  Aligned_cols=66  Identities=26%  Similarity=0.441  Sum_probs=45.0

Q ss_pred             HHHhhcC-CeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914           68 EQDVKEN-PVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE  138 (169)
Q Consensus        68 ~~~~~~~-~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~  138 (169)
                      ++.++++ +|+|+...    +||+.|+.+...+.+.      .+.+-.+|++.++.+.+    ..+-.++|.+  |-+|+
T Consensus        11 ~~~i~~~k~vvv~F~a----~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~~----~~~V~~~Pt~~~~~~G~   82 (105)
T d1nw2a_          11 QQAIQGDKPVLVDFWA----AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTS----QFGIMSIPTLILFKGGE   82 (105)
T ss_dssp             HHHTTSSSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHHH----HTTCCBSSEEEEEETTE
T ss_pred             HHHHhCCCcEEEEEEC----CCCCCcccccchhhhhhhhcCCceEEEEEECCCCcccHH----HCCcceeeEEEEEECCE
Confidence            3445444 45554443    8999999988877543      47788899998877644    3456778877  55887


Q ss_pred             Eee
Q 030914          139 FIG  141 (169)
Q Consensus       139 ~iG  141 (169)
                      .++
T Consensus        83 ~~~   85 (105)
T d1nw2a_          83 PVK   85 (105)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00022  Score=47.05  Aligned_cols=58  Identities=17%  Similarity=0.312  Sum_probs=41.7

Q ss_pred             CeEE-EeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           75 PVML-YMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        75 ~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      .|++ |+.     +||+.|+.+...|.+.     ++.+..+|++.++++.    +..+-..+|.+  |-||+.++
T Consensus        22 ~vvv~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~----~~~~V~~~Pt~~~~~~G~~v~   87 (105)
T d2ifqa1          22 LVVVDFSA-----TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVA----SECEVKCMPTFQFFKKGQKVG   87 (105)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTTCCBSSEEEEEETTEEEE
T ss_pred             EEEEEEEc-----CCccchhhhhhhhhhhccccccceeeecccccCHhHH----HHcCceEEEEEEEEECCEEEE
Confidence            4565 555     7999999998877543     3557788998887753    34467888887  55887664

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=97.42  E-value=0.00012  Score=48.05  Aligned_cols=61  Identities=26%  Similarity=0.409  Sum_probs=40.7

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      ..+|+|+..+    +||++|++....+.+.    +  +.+..+|++.++++    .+..+-.++|.+  |-+|+.++
T Consensus        17 ~~~vlv~F~a----~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~l----~~~~~V~~~Pt~~~~~~G~~v~   85 (104)
T d1fb6a_          17 EVPVMVDFWA----PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI----ATQYNIRSIPTVLFFKNGERKE   85 (104)
T ss_dssp             SSCEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCcEEEEEEc----CccCCccccCchhHHHHHhhcCccceeEEecccchhh----hhhcceeeeeEEEEEEcCeEEE
Confidence            3456664433    7999999998877543    2  44666788777764    344567788887  55887554

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00045  Score=43.05  Aligned_cols=70  Identities=14%  Similarity=0.091  Sum_probs=52.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ++.||.-     +.++.|..++-+|...|++|+.+.++................++|.+..||..|.....+...
T Consensus         2 ~~~L~yf-----~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           2 PYTVVYF-----PVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             SEEEEEC-----SSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEEc-----CCchhHHHHHHHHHHcCCCcEEEEecccccccccccccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            3455544     457899999999999999999999975444333444555567899999999998877665554

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=97.39  E-value=0.00033  Score=46.87  Aligned_cols=60  Identities=17%  Similarity=0.193  Sum_probs=39.6

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCC-CHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILE-DPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~-~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      .+|+|+...    +||++|+.....|++     .++.+-.+|++. ++++.    +..|-.++|.+  |-+|+.|.
T Consensus        26 k~vvv~f~a----~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~l~----~~~~V~~~Pt~~~~k~G~~v~   93 (112)
T d1f9ma_          26 KPVVLDMFT----QWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLA----KELGIRVVPTFKILKENSVVG   93 (112)
T ss_dssp             SCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHHHH----HHHCCSSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEc----CCCcchHHHHHHHhhhccccccceeecccccccchhhH----hheeeccCCEEEEEECCEEEE
Confidence            356665443    799999999887764     356677778764 45543    33466677777  44887653

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00026  Score=48.07  Aligned_cols=70  Identities=14%  Similarity=0.127  Sum_probs=44.9

Q ss_pred             CeEEEeecCC---CCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHH---HHHHhcCCCCCcEEEe--CCeEe
Q 030914           75 PVMLYMKGVP---EFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKS---AVKAFSHWPTFPQIFI--KGEFI  140 (169)
Q Consensus        75 ~Vvly~k~~~---~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~---~l~~~~g~~t~P~vfi--~g~~i  140 (169)
                      .|+||..++.   ..+|||.|+++...+++.    +  +.+-.+|++..++..+   .+.+..+...+|++.+  +|+.+
T Consensus        23 ~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~~~~g~~l  102 (119)
T d1woua_          23 TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKL  102 (119)
T ss_dssp             EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCEE
T ss_pred             EEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEEEEEEECCeEE
Confidence            4666655442   357999999999887543    2  4566788865444332   2444457889999753  66666


Q ss_pred             eccH
Q 030914          141 GGSD  144 (169)
Q Consensus       141 GG~d  144 (169)
                      .+.+
T Consensus       103 ~~~~  106 (119)
T d1woua_         103 VESE  106 (119)
T ss_dssp             EGGG
T ss_pred             eeee
Confidence            5544

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00014  Score=50.88  Aligned_cols=67  Identities=16%  Similarity=0.113  Sum_probs=47.5

Q ss_pred             HHHHHHhhc--C-CeEE-EeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914           65 EVVEQDVKE--N-PVML-YMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI-  133 (169)
Q Consensus        65 ~~i~~~~~~--~-~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-  133 (169)
                      ..+++++..  + .|+| |+.     +||+.|+++..+|++.      .+.+-.+|++.++++    .+..+-..+|++ 
T Consensus        11 ~~~dq~i~~~~~k~vvv~F~a-----~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~l----a~~~~I~~~PT~~   81 (137)
T d1qgva_          11 WQVDQAILSEEDRVVVIRFGH-----DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDF----NKMYELYDPCTVM   81 (137)
T ss_dssp             HHHHHHHHTCSSSEEEEEEEC-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTSSCSCSSCEEE
T ss_pred             HHHHHHHHhCCCCEEEEEEEC-----CCCccchhcChHHHHHHHHhhccceEEEeeccccchh----hhhcCeeeEEEEE
Confidence            446666643  3 3444 565     8999999999988654      266778899888764    445567788987 


Q ss_pred             -EeCCeEe
Q 030914          134 -FIKGEFI  140 (169)
Q Consensus       134 -fi~g~~i  140 (169)
                       |.+|++|
T Consensus        82 ~f~~g~~i   89 (137)
T d1qgva_          82 FFFRNKHI   89 (137)
T ss_dssp             EEETTEEE
T ss_pred             EEeCCcEE
Confidence             7789877

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.28  E-value=0.00061  Score=44.73  Aligned_cols=59  Identities=24%  Similarity=0.370  Sum_probs=40.3

Q ss_pred             CCeEE-EeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           74 NPVML-YMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        74 ~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      .+|+| |..     +||++|++....+.+.      .+.+..+|++.++++.+    ..+-.++|.+  |-+|+.++
T Consensus        20 kpvlv~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l~~----~~~V~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          20 VPVLVDFWA-----PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVAS----EYGIRSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH----HHTCCSSCEEEEESSSSEEE
T ss_pred             CcEEEEEEC-----CCCCCccccChHHHHHHHhhcccceEEEEecccchhHHH----HhcccceEEEEEEECCeEEE
Confidence            35666 555     8999999998766433      35577789988876543    3456777877  44786654

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.27  E-value=0.00032  Score=46.61  Aligned_cols=70  Identities=14%  Similarity=0.217  Sum_probs=42.8

Q ss_pred             cHHHHHHHHhhcCCeEE-EeecCCCCCCCccHHHHHHHHhcC----C--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914           62 SLKEVVEQDVKENPVML-YMKGVPEFPQCGFSSLAVRVLGAY----N--VPISARNILEDPELKSAVKAFSHWPTFPQI-  133 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvl-y~k~~~~~~~C~~c~~a~~~L~~~----~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-  133 (169)
                      +.+..+.+. +...|+| |..     +||+.|++....+++.    +  +.+..+|++.++++    .+..+-..+|.+ 
T Consensus        15 ~~~~~l~~~-~~k~vlv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~l----~~~~~V~~~Pt~~   84 (111)
T d1xwaa_          15 DLDGQLTKA-SGKLVVLDFFA-----TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI----AMEYNISSMPTFV   84 (111)
T ss_dssp             HHHHHHHHH-TTSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHH----HHHTTCCSSSEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEEC-----CcccCccccchhHHHHhhhcccceEEEEEEeecCcch----hhcCCCccccEEE
Confidence            344444433 2234555 555     7999999998877544    2  44566777777654    344466677776 


Q ss_pred             -EeCCeEee
Q 030914          134 -FIKGEFIG  141 (169)
Q Consensus       134 -fi~g~~iG  141 (169)
                       |-+|+.+.
T Consensus        85 ~~~~G~~v~   93 (111)
T d1xwaa_          85 FLKNGVKVE   93 (111)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCEEEE
Confidence             45787554

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0014  Score=40.50  Aligned_cols=67  Identities=12%  Similarity=0.091  Sum_probs=52.4

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.||.-     +.++.|..++-+|...||+|+.+.+..+.  ....++.+...++|.+..||..|.....+...
T Consensus         3 ~kL~yf-----~~~~~~~~vRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~y   69 (74)
T d2cvda2           3 YKLTYF-----NMRGRAEIIRYIFAYLDIQYEDHRIEQAD--WPEIKSTLPFGKIPILEVDGLTLHQSLAIARY   69 (74)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGGG--HHHHHTTSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEEc-----CCcHHHHHHHHHHHHcCCCCEeccccccc--chhhcccCCCCCcCEEEECCEEEEcHHHHHHH
Confidence            455544     56899999999999999999999887543  34566667788999999999988876655554

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00018  Score=50.37  Aligned_cols=35  Identities=23%  Similarity=0.460  Sum_probs=32.3

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP  115 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~  115 (169)
                      |.||..     |.|.-|++|+++|++.|++|+.+|+..++
T Consensus         2 i~iY~~-----p~Cs~srkal~~L~~~~i~~~~idy~k~p   36 (138)
T d1j9ba_           2 ITIYHN-----PACGTSRNTLEMIRNSGTEPTIILYLENP   36 (138)
T ss_dssp             CEEECC-----TTCHHHHHHHHHHHHTTCCCEEECTTTSC
T ss_pred             eEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeeccCC
Confidence            789988     89999999999999999999999998753

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00076  Score=47.52  Aligned_cols=28  Identities=11%  Similarity=0.204  Sum_probs=19.9

Q ss_pred             HHhcCCCCCcEEEe-CCeEeecc---HHHHHH
Q 030914          122 KAFSHWPTFPQIFI-KGEFIGGS---DIILNM  149 (169)
Q Consensus       122 ~~~~g~~t~P~vfi-~g~~iGG~---d~l~~~  149 (169)
                      .+..|.+.+|.+|+ ||+.|-|+   +.+.++
T Consensus       114 a~~lgv~GTPt~~~~nG~~v~G~~~~e~l~~~  145 (156)
T d1eeja1         114 GVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEF  145 (156)
T ss_dssp             HHHHTCCSSSEEECTTSCEEESCCCHHHHHHH
T ss_pred             HHHcCCcCCCEEEEeCCeEecCCCCHHHHHHH
Confidence            33457889999888 89999886   444444

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.001  Score=44.53  Aligned_cols=48  Identities=21%  Similarity=0.361  Sum_probs=34.5

Q ss_pred             CCCccHHHHHHHHhc-------CCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCe
Q 030914           87 PQCGFSSLAVRVLGA-------YNVPISARNILEDPELKSAVKAFSHWPTFPQIFI--KGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~-------~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~  138 (169)
                      |||++|+++...+++       .+|.+-.+|++.++++    ....+..++|.+++  +|+
T Consensus        37 ~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pti~~f~~g~   93 (119)
T d2b5ea4          37 PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQDL----CMEHNIPGFPSLKIFKNSD   93 (119)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTC
T ss_pred             CccCcccccchhhhhhhhhhcccceeeeeeeccchHHH----HHHhccccCCeEEEEECCE
Confidence            899999987775533       2467788899887664    33346788898865  764

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.008  Score=41.87  Aligned_cols=93  Identities=15%  Similarity=0.134  Sum_probs=54.3

Q ss_pred             ccHHHHHHHHhhcCC-eEEEeecCCCCCCCccHHHHHH----------HHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCC
Q 030914           61 LSLKEVVEQDVKENP-VMLYMKGVPEFPQCGFSSLAVR----------VLGAYNVPISARNILEDPELKSAVKAFSHWPT  129 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~-Vvly~k~~~~~~~C~~c~~a~~----------~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t  129 (169)
                      .+.++.++..-+.++ |+||..+    +||++|++..+          +++++   |..+.++.+..--..+.+..+..+
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~----~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~~~~~~~y~v~~  101 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQN----VQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFYKLGD  101 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEEC----SCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHHcCCcEEEEEec----CCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhhhhhhhheecCc
Confidence            467777777766654 6677765    79999987644          44443   444444433332334555557788


Q ss_pred             CcEE-EeC---CeE---eeccHHHHHHHhcccHHHHHhccc
Q 030914          130 FPQI-FIK---GEF---IGGSDIILNMHQSGELKEKLKGIA  163 (169)
Q Consensus       130 ~P~v-fi~---g~~---iGG~d~l~~~~~~g~L~~~L~~~~  163 (169)
                      +|.+ ||+   |+.   .|+.+ ..+..  ..|++.|..++
T Consensus       102 ~Pti~~idp~~ge~v~~~~~~~-~~~fl--~~L~~fl~~~~  139 (147)
T d2dlxa1         102 FPYVSILDPRTGQKLVEWHQLD-VSSFL--DQVTGFLGEHG  139 (147)
T ss_dssp             SSEEEEECTTTCCCCEEESSCC-HHHHH--HHHHHHHHHTC
T ss_pred             eeEEEEEeCCCCeEecccCCCC-HHHHH--HHHHHHHhhCC
Confidence            9977 564   554   34443 22222  44777776554

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0014  Score=42.96  Aligned_cols=63  Identities=19%  Similarity=0.375  Sum_probs=39.8

Q ss_pred             hhcCC-eEEEeecCCCCCCCccHHHHHHHHhc----CC--CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEee
Q 030914           71 VKENP-VMLYMKGVPEFPQCGFSSLAVRVLGA----YN--VPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFIG  141 (169)
Q Consensus        71 ~~~~~-Vvly~k~~~~~~~C~~c~~a~~~L~~----~~--v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~iG  141 (169)
                      ++.++ |+|+..+    +||++|+.....+.+    .+  +.+..+|++.++.+    ....|-..+|.+  |.+|+.++
T Consensus        17 ~~~~~~v~v~F~a----~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~l----~~~~~v~~~PT~~~~~~G~~v~   88 (108)
T d2trxa_          17 LKADGAILVDFWA----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             TTCSSEEEEEEEC----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             HhCCCcEEEEEEC----CCCCCccccCcHHHHHHHHhhcceeeeeccccchhhH----HHHhCCCcEEEEEEEECCEEEE
Confidence            34433 5554433    899999987776643    33  34567788877664    344467788876  44887553

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.0036  Score=41.23  Aligned_cols=69  Identities=17%  Similarity=0.209  Sum_probs=42.2

Q ss_pred             cHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH-------hcC-CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE
Q 030914           62 SLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL-------GAY-NVPISARNILEDPELKSAVKAFSHWPTFPQI  133 (169)
Q Consensus        62 ~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L-------~~~-~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v  133 (169)
                      +++..+.+. +..+|+|+..+    +||++|+.....+       +.. ++....+|+..+...-..+.+..|-..+|.+
T Consensus        12 ~~~~~l~~~-~gK~vlv~F~a----~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~   86 (117)
T d2fwha1          12 ELNQALVEA-KGKPVMLDLYA----DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTI   86 (117)
T ss_dssp             HHHHHHHHH-TTSCEEEEEEC----TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEE
T ss_pred             HHHHHHHHc-CCCeEEEEEec----ccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceEE
Confidence            344444443 23467775554    7999999976543       111 2345567777666655566666677788887


Q ss_pred             Ee
Q 030914          134 FI  135 (169)
Q Consensus       134 fi  135 (169)
                      ++
T Consensus        87 ~~   88 (117)
T d2fwha1          87 LF   88 (117)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.53  E-value=0.00022  Score=50.85  Aligned_cols=71  Identities=10%  Similarity=0.061  Sum_probs=41.1

Q ss_pred             cccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE
Q 030914           60 GLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF  134 (169)
Q Consensus        60 ~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf  134 (169)
                      ..+..+.|+.+-..-.+++|..     +|||+|++..-.|.+.     ++.+..++++.+++....... .+...+|.++
T Consensus        42 ~~~~~~~l~~~~~~~~~l~~~~-----tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~-~~~~~~p~~~  115 (166)
T d1z6na1          42 PSALTERLQRIERRYRLLVAGE-----MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLA-LERIAIPLVL  115 (166)
T ss_dssp             CHHHHHHHHTCCSCEEEEEECC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTT-CSSCCSSEEE
T ss_pred             cHHHHHHHHHhcCCeEEEEEEe-----CcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHH-hcccccccee
Confidence            3445566665544555777776     6999999998877554     345566666544433222222 2445555555


Q ss_pred             eC
Q 030914          135 IK  136 (169)
Q Consensus       135 i~  136 (169)
                      +.
T Consensus       116 ~~  117 (166)
T d1z6na1         116 VL  117 (166)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.002  Score=44.35  Aligned_cols=54  Identities=13%  Similarity=0.146  Sum_probs=36.2

Q ss_pred             CCCccHHHHHHHHhcC-----CCCeE--EEEcCCCHHHHHHHHHhcCCCCCcEEEe--CCeEeeccH
Q 030914           87 PQCGFSSLAVRVLGAY-----NVPIS--ARNILEDPELKSAVKAFSHWPTFPQIFI--KGEFIGGSD  144 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-----~v~~~--~~di~~~~~~~~~l~~~~g~~t~P~vfi--~g~~iGG~d  144 (169)
                      +|||.|+.+.-+|.+.     +..+.  .+|++.+    .++.+..|-..+|.+.+  ||+.++.+.
T Consensus        46 ~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d~~----~~la~~~~V~~~PT~~~~~~G~~v~~~~  108 (132)
T d2hfda1          46 KRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS----EAIGDRFGVFRFPATLVFTGGNYRGVLN  108 (132)
T ss_dssp             SCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHHHH----HHHHHHHTCCSCCEEEEEETTEEEEEEC
T ss_pred             CCChhHHHHHHHHHHHHHHccCCcceeEEEEecCC----HHHHHhhccCcceeEEEEEcCcEeeeec
Confidence            7999999888777654     22333  4454433    34556667889997744  999887653

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.003  Score=44.02  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=18.3

Q ss_pred             HHhcCCCCCcEEEe-CCeEeeccH
Q 030914          122 KAFSHWPTFPQIFI-KGEFIGGSD  144 (169)
Q Consensus       122 ~~~~g~~t~P~vfi-~g~~iGG~d  144 (169)
                      .+..|.+..|.+|+ ||+.|-|+-
T Consensus       114 a~~lGv~GTPt~~~~nG~~i~G~~  137 (150)
T d1t3ba1         114 GIQFGVRGTPSIVTSTGELIGGYL  137 (150)
T ss_dssp             HHHHTCCSSCEEECTTSCCCCSCC
T ss_pred             HHhcCcCCCCEEEEcCCcEecCCC
Confidence            34458899999888 899999863

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.45  E-value=0.0029  Score=39.77  Aligned_cols=55  Identities=13%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             CeEEEeecCCCCCCCccHHHHHH----HHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEe
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVR----VLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFI  140 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~----~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~i  140 (169)
                      +|-+|+      ++|+.|.++.+    .+.+.|++.+...|..-++    +.+ .|--++|.+.|||+.+
T Consensus         3 ~IkVlg------~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d~~e----i~~-ygVmstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIYG------TGCANCQMLEKNAREAVKELGIDAEFEKIKEMDQ----ILE-AGLTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEEC------SSSSTTHHHHHHHHHHHHHTTCCEEEEEECSHHH----HHH-HTCSSSSCEEETTEEE
T ss_pred             EEEEeC------CCCccHHHHHHHHHHHHHHcCCceEEEEeCCHHH----HHH-cCCcCCCEEEECCEEE
Confidence            456774      37999996554    5789999999888853222    344 5788999999999855

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0022  Score=42.59  Aligned_cols=48  Identities=21%  Similarity=0.455  Sum_probs=32.2

Q ss_pred             CCCccHHHHHHHH----hcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCe
Q 030914           87 PQCGFSSLAVRVL----GAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGE  138 (169)
Q Consensus        87 ~~C~~c~~a~~~L----~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~  138 (169)
                      +||++|+++...+    +..     .|.+..+|++.++.+...    .+...+|.+  |-+|+
T Consensus        34 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~G~   92 (120)
T d1meka_          34 PWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQ----YGVRGYPTIKFFRNGD   92 (120)
T ss_dssp             SSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHH----HTCCSSSEEEEEESSC
T ss_pred             CCcCCccccchhhhhhcccccccccceeeeccccccchhHHHH----hCCccCCeEEEEECCe
Confidence            7999999776544    222     266778888877765443    356788876  44664

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=96.31  E-value=0.00018  Score=45.51  Aligned_cols=46  Identities=11%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKV   56 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~   56 (169)
                      +++|.|     |.|+|+.++.++|.++|++|.. |+..|++.++.++..+.+
T Consensus         3 I~iys~-----~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~   49 (82)
T d1fova_           3 VEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGR   49 (82)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSS
T ss_pred             EEEEeC-----CCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCC
Confidence            345555     8899999999999999999998 998886655444444333

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.26  E-value=0.00083  Score=45.49  Aligned_cols=54  Identities=13%  Similarity=0.060  Sum_probs=28.3

Q ss_pred             CCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEE--eCCeEeec
Q 030914           87 PQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIF--IKGEFIGG  142 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vf--i~g~~iGG  142 (169)
                      +|||.|+.+..+|.+.     +..+....|+  -+...++.+..|...+|.++  -+|+.++-
T Consensus        40 ~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd--~d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~  100 (119)
T d2es7a1          40 RRTPEVSDNPVMIAELLREFPQFDWQVAVAD--LEQSEAIGDRFNVRRFPATLVFTDGKLRGA  100 (119)
T ss_dssp             CC----CCHHHHHHHHHHTCTTSCCEEEEEC--HHHHHHHHHTTTCCSSSEEEEESCC----C
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCceEEEEEE--CCCCHHHHHhcCcCcceEEEEEEcCeEEEE
Confidence            6999999988877543     3344433333  22234566677889999884  47776553

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=96.20  E-value=0.013  Score=35.99  Aligned_cols=62  Identities=18%  Similarity=0.101  Sum_probs=44.8

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCCCHHHH-HHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILEDPELK-SAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~-~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      ..+.|..++-+|...|++|+.+.++..+... ...+......++|.+-.||..|.....+...
T Consensus         9 ~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~y   71 (77)
T d1gula2           9 GRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   71 (77)
T ss_dssp             SCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CcchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            4578899999999999999988886543322 2222334567899999999988776555443

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.01  E-value=0.0087  Score=40.00  Aligned_cols=56  Identities=18%  Similarity=0.168  Sum_probs=35.0

Q ss_pred             eEEEeecCCCCCCCccHHHH------HHHH-------hcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEE--EeCCeEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLA------VRVL-------GAYNVPISARNILEDPELKSAVKAFSHWPTFPQI--FIKGEFI  140 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a------~~~L-------~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~v--fi~g~~i  140 (169)
                      +|.|..     |||++|...      ...+       +..+|.+-.+|+..++++...    .+...+|.|  |.+|+.+
T Consensus        32 ~V~Fya-----pwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l~~~----~~I~~yPTi~~f~~g~~~  102 (124)
T d1a8ya1          32 ALLYHE-----PPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKK----LGLTEEDSIYVFKEDEVI  102 (124)
T ss_dssp             EEEEEC-----CCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHHHHT----TTCCSTTCEEEEESSSEE
T ss_pred             EEEEEC-----CCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccchhhc----cccccCCcEEEeccCccE
Confidence            556666     899986432      2222       344688889999888775433    344445554  6688755

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=95.94  E-value=0.023  Score=34.84  Aligned_cols=61  Identities=23%  Similarity=0.151  Sum_probs=47.6

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +.-+.|+.++-+|...|++|+.+.+..+.  ....++.....++|.+.+||..|.....+...
T Consensus         9 ~~~g~~~~iRl~L~~~gi~ye~~~~~~~~--~~~~~~~~p~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           9 PLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             SSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHH
T ss_pred             CCchhHHHHHHHHHHcCCCchhhcccccc--chhhhhccccCCcCEEEECCeeeecHHHHHHH
Confidence            34578999999999999999999887543  34456666677999999999988876655554

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=95.88  E-value=0.0052  Score=38.12  Aligned_cols=63  Identities=14%  Similarity=0.125  Sum_probs=44.4

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHH-HHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELK-SAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~-~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      +..+.|..++-+|...||+|+.+.++...... ...........+|.+..||..|.....+...
T Consensus        10 ~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rY   73 (78)
T d1b48a2          10 NGRGRMESIRWLLAAAGVEFEEEFLETREQYEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (78)
T ss_dssp             SSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCCcEEEEEcchhhhcchhhcccccCCCCCEEEeCCeEEECHHHHHHH
Confidence            35688999999999999999988886443322 2222234456899999999888766554443

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.76  E-value=0.017  Score=35.56  Aligned_cols=69  Identities=12%  Similarity=0.066  Sum_probs=50.4

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      |...||.-     +..+.+..++-+|...|++|+.+.+..+.  ..+.++.....++|.+.+||..+.....+...
T Consensus         2 ~s~kL~Yf-----~~~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~p~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2           2 HSYTLFYF-----NVKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHH
T ss_pred             ccEEEEec-----CCchHHHHHHHHHHHcCCCCEEecCChhh--hhhhhccCcCCCCcEEEECCcccccHHHHHHH
Confidence            44556544     34567888888999999999998887533  34555666677999999999988876655543

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=95.51  E-value=0.023  Score=39.41  Aligned_cols=18  Identities=11%  Similarity=0.337  Sum_probs=14.6

Q ss_pred             cCCCCCcEEEeCCeEeec
Q 030914          125 SHWPTFPQIFIKGEFIGG  142 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~iGG  142 (169)
                      .|-..+|.++|||+++-+
T Consensus       143 ~gi~gTPt~~InGk~~v~  160 (181)
T d1beda_         143 SGLTGVPAVVVNNRYLVQ  160 (181)
T ss_dssp             HTCCSSSEEEETTTEEEC
T ss_pred             hCCccccEEEECCEEeeC
Confidence            367789999999997644

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.46  E-value=0.0047  Score=45.87  Aligned_cols=92  Identities=11%  Similarity=0.067  Sum_probs=55.2

Q ss_pred             HHHHHHHhhcCC---eEE-EeecCCCCCCCccHHHHHHHHhcCC-----CCeEEEEcCCCHHHHHHHHHhcCCCCCcEE-
Q 030914           64 KEVVEQDVKENP---VML-YMKGVPEFPQCGFSSLAVRVLGAYN-----VPISARNILEDPELKSAVKAFSHWPTFPQI-  133 (169)
Q Consensus        64 ~~~i~~~~~~~~---Vvl-y~k~~~~~~~C~~c~~a~~~L~~~~-----v~~~~~di~~~~~~~~~l~~~~g~~t~P~v-  133 (169)
                      +.+++.+-+..+   ||| |..     |||+.|+.+-..|..+-     +.|..+|.+..+     +....+-..+|.+ 
T Consensus       108 ~~f~~~v~~~~~~~~Vvvhfy~-----~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-----~~~~~~i~~lPtl~  177 (217)
T d2trcp_         108 EQFLETIEKEQKVTTIVVNIYE-----DGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-----AGDRFSSDVLPTLL  177 (217)
T ss_dssp             HHHHHHHHHSCTTCEEEEEEEC-----TTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-----CSTTSCGGGCSEEE
T ss_pred             HHHHHHHHhcCCCCeEEEEEEc-----CCCCChhhhhhhHHHHhhhcccceEEEEccccch-----hHHhCCCCCCCeEE
Confidence            445555444433   555 455     79999999998886542     556666654221     2223355678977 


Q ss_pred             -EeCCeEeeccHHHHHH----HhcccHHHHHhccccc
Q 030914          134 -FIKGEFIGGSDIILNM----HQSGELKEKLKGIASN  165 (169)
Q Consensus       134 -fi~g~~iGG~d~l~~~----~~~g~L~~~L~~~~~~  165 (169)
                       |-||+.|+.+--+.+.    .....|+.+|..++..
T Consensus       178 ~yk~G~~v~~~vg~~~~~g~~~~~~~lE~~L~~~g~l  214 (217)
T d2trcp_         178 VYKGGELISNFISVAEQFAEDFFAADVESFLNEYGLL  214 (217)
T ss_dssp             EEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTCS
T ss_pred             EEECCEEEEEEECccccccccCCHHHHHHHHHHcCCC
Confidence             6699988754322222    1224588888887764

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.46  E-value=0.053  Score=33.56  Aligned_cols=71  Identities=11%  Similarity=0.169  Sum_probs=48.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHH---HHHH--HHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPEL---KSAV--KAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~---~~~l--~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      .++++|.-     +..+.+..++=+|...|++|+.+.++.+...   ....  ...+...++|.+-.||..+.....+..
T Consensus         3 ~~i~L~Y~-----~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~   77 (85)
T d1okta2           3 DNIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR   77 (85)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHH
T ss_pred             CCeEEEEc-----CCchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHHH
Confidence            46777644     2356788899999999999998888754322   1222  222346789999999998877655544


Q ss_pred             H
Q 030914          149 M  149 (169)
Q Consensus       149 ~  149 (169)
                      .
T Consensus        78 y   78 (85)
T d1okta2          78 Y   78 (85)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=95.27  E-value=0.024  Score=34.86  Aligned_cols=61  Identities=18%  Similarity=0.177  Sum_probs=47.0

Q ss_pred             CCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           87 PQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        87 ~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      |..+.|..++-+|...|++|+.+.+....  ....+......++|.+..||..|....-+...
T Consensus         9 ~~~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~lPvL~~~~~~l~qS~AI~~Y   69 (77)
T d1tu7a2           9 SIRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRH   69 (77)
T ss_dssp             SSSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCceeeeccccc--chhhcccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            34678999999999999999988876432  23445566788999999999998877665554

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.047  Score=38.28  Aligned_cols=32  Identities=13%  Similarity=0.233  Sum_probs=22.2

Q ss_pred             eEEEeecCCCCCCCccHHHHHH----HHhcCCCCeEEEEcC
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVR----VLGAYNVPISARNIL  112 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~----~L~~~~v~~~~~di~  112 (169)
                      |++|+-     +.||||++.-.    +++...+.+..+++.
T Consensus        40 v~vF~D-----~~CP~C~~~~~~l~~l~~~~~v~v~~~~~~   75 (169)
T d1v58a1          40 VYVFAD-----PFCPYCKQFWQQARPWVDSGKVQLRTLLVG   75 (169)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEC-----CCCcchHHHHHHHHHHHhccceeEEEEecc
Confidence            556666     89999996554    455556777777764

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=94.83  E-value=0.064  Score=32.96  Aligned_cols=61  Identities=20%  Similarity=0.218  Sum_probs=44.0

Q ss_pred             CccHHHHHHHHhcCCCCeEEEEcCCCHHHHH-HHHHhcCCCCCcEEEeCCeEeeccHHHHHH
Q 030914           89 CGFSSLAVRVLGAYNVPISARNILEDPELKS-AVKAFSHWPTFPQIFIKGEFIGGSDIILNM  149 (169)
Q Consensus        89 C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~-~l~~~~g~~t~P~vfi~g~~iGG~d~l~~~  149 (169)
                      -+.+..++-+|...||+|+.+.+........ .........++|.+-+||..|....-+...
T Consensus        12 ~grae~irl~L~~~gv~yed~~~~~~~~~~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~Y   73 (79)
T d1k3ya2          12 RGRMESTRWLLAAAGVEFEEKFIKSAEDLDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (79)
T ss_dssp             STTTHHHHHHHHHHTCCCEEEEECSHHHHHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCceEEEecchhhhhhhcccccCCCCCCCEEEECCeEEEcHHHHHHH
Confidence            4678899999999999999988875433222 222334567999999999888776555543

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.0088  Score=37.16  Aligned_cols=58  Identities=12%  Similarity=0.096  Sum_probs=41.2

Q ss_pred             HHHHHHHHhcCCCCeEEEEcC--CCH-HHHHHHHHhcCCCCCcEEEe-CCeEeeccHHHHHH
Q 030914           92 SSLAVRVLGAYNVPISARNIL--EDP-ELKSAVKAFSHWPTFPQIFI-KGEFIGGSDIILNM  149 (169)
Q Consensus        92 c~~a~~~L~~~~v~~~~~di~--~~~-~~~~~l~~~~g~~t~P~vfi-~g~~iGG~d~l~~~  149 (169)
                      |.++.-+|.+.|++|+.+.|+  ... ...+++.+.+...++|.+.. ||..+.....+...
T Consensus        11 s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~y   72 (80)
T d1n2aa2          11 SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQY   72 (80)
T ss_dssp             THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHH
Confidence            678888999999999887663  322 23345667788899999987 45777665555444

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=94.71  E-value=0.11  Score=31.67  Aligned_cols=58  Identities=17%  Similarity=0.162  Sum_probs=45.6

Q ss_pred             CccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           89 CGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        89 C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      -+.|..++-+|...|++|+.+.+.  .+.....+....+.++|.+.+||..|....-+..
T Consensus        12 ~gr~e~vR~~L~~~gi~ye~~~~~--~~~~~~~~~~~p~g~lPvL~~~g~~i~qS~AI~~   69 (77)
T d1tw9a2          12 RGAGECARQVFALADQKYEDVRLT--QETFVPLKATFPFGQVPVLEVDGQQLAQSQAICR   69 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEEC--HHHHGGGGGGSTTSCSCEEEETTEEEECHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCceeeecc--cccchhhhhhcccCCCCEEEECCEEEEcHHHHHH
Confidence            478999999999999999998885  3333455566678899999999998877655544

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.043  Score=33.97  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=43.3

Q ss_pred             CCccHHHHHHHHhcCCCCeEEEEcCCCHH-------H-HHHHHHhcCCCCCcEEEeCCeEeeccHHHHH
Q 030914           88 QCGFSSLAVRVLGAYNVPISARNILEDPE-------L-KSAVKAFSHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        88 ~C~~c~~a~~~L~~~~v~~~~~di~~~~~-------~-~~~l~~~~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      ..+.+..++-+|...|++|+.+.+..++.       . .+..+..+...++|.+-.+|..|.....+..
T Consensus         9 ~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AIl~   77 (84)
T d2c4ja2           9 IRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAILR   77 (84)
T ss_dssp             SSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHHH
T ss_pred             CchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHHHH
Confidence            35788999999999999999888864321       1 1122334456789999999988876555444

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.52  E-value=0.01  Score=40.35  Aligned_cols=67  Identities=16%  Similarity=0.257  Sum_probs=38.8

Q ss_pred             ccHHHHHHHHhhcCCe-EEEeecCCCCCCCccHHHHHHHHhcC-------CCCeEEEEcCCCHHHHHHHHHhcCCCCCcE
Q 030914           61 LSLKEVVEQDVKENPV-MLYMKGVPEFPQCGFSSLAVRVLGAY-------NVPISARNILEDPELKSAVKAFSHWPTFPQ  132 (169)
Q Consensus        61 ~~~~~~i~~~~~~~~V-vly~k~~~~~~~C~~c~~a~~~L~~~-------~v~~~~~di~~~~~~~~~l~~~~g~~t~P~  132 (169)
                      .+.++.|..  ....| |.|..     |||++|+++...|++.       +..+...+++.+..+    ....+...+|.
T Consensus        20 ~nf~~~v~~--~~k~vlV~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~~----~~~~~v~~~Pt   88 (140)
T d2b5ea1          20 KNHDEIVND--PKKDVLVLYYA-----PWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEND----VRGVVIEGYPT   88 (140)
T ss_dssp             TTHHHHHHC--TTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGCC----CSSCCCSSSSE
T ss_pred             cCHHHHHhc--CCCCEEEEEEe-----ccCcccchhHHHHHHHHHHHhccccceEEEeeeccchh----ccccccccCCe
Confidence            344555432  12345 45555     8999999887766543       334555566544432    23346788998


Q ss_pred             EEe--CCe
Q 030914          133 IFI--KGE  138 (169)
Q Consensus       133 vfi--~g~  138 (169)
                      +++  +|+
T Consensus        89 l~~f~~g~   96 (140)
T d2b5ea1          89 IVLYPGGK   96 (140)
T ss_dssp             EEEECCTT
T ss_pred             EEEEECCE
Confidence            854  654

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.49  E-value=0.071  Score=35.36  Aligned_cols=38  Identities=21%  Similarity=0.325  Sum_probs=22.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCC
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILE  113 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~  113 (169)
                      +.++++|+.-+    +|||.|++....|.+.     ++.+..+....
T Consensus        24 ~Gk~vll~fwa----~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d   66 (134)
T d1zzoa1          24 LGKPAVLWFWA----PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD   66 (134)
T ss_dssp             TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSS
T ss_pred             CCCEEEEEecc----cccCcccccchhhHHHHhhhcccccccccccc
Confidence            34566665444    6999998776655433     24444555543

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.36  E-value=0.096  Score=34.86  Aligned_cols=41  Identities=20%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhc-----CCCCeEEEEcCCCHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGA-----YNVPISARNILEDPE  116 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-----~~v~~~~~di~~~~~  116 (169)
                      +..+|+|+.-+    +|||.|.+....|++     .++.+..++.+.+.+
T Consensus        23 ~Gk~vll~F~a----~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~   68 (134)
T d1lu4a_          23 QGKPAVLWFWT----PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVG   68 (134)
T ss_dssp             TTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHH
T ss_pred             CCCEEEEEEee----cccCCceecchhHHHHhhhhccccccccccccchh
Confidence            34567776554    699999987776632     356666667665543

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.25  E-value=0.015  Score=36.70  Aligned_cols=32  Identities=3%  Similarity=-0.040  Sum_probs=27.1

Q ss_pred             CCCCCCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914           13 IASYPSARSSRIVSGSLYHNGMKYST-DVPNDP   44 (169)
Q Consensus        13 ~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~   44 (169)
                      .++.|.|+|+.++.++|.++|++|.. ++..+.
T Consensus         8 ~~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~   40 (87)
T d1abaa_           8 DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEK   40 (87)
T ss_dssp             CTTTSCCHHHHHHHHHHHHTTCCEEEEESCSBT
T ss_pred             CCCCCCChhHHHHHHHHHHcCCCceeccccccc
Confidence            34679999999999999999999987 776543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.23  E-value=0.086  Score=36.13  Aligned_cols=19  Identities=26%  Similarity=0.326  Sum_probs=16.0

Q ss_pred             cCCCCCcEEEeCCeEeecc
Q 030914          125 SHWPTFPQIFIKGEFIGGS  143 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~iGG~  143 (169)
                      .|-..+|.+||||+.+.|.
T Consensus       142 ~gI~gTPt~~Ing~~~~g~  160 (172)
T d1z6ma1         142 AHIQFVPTIIIGEYIFDES  160 (172)
T ss_dssp             HTCCSSCEEEETTEEECTT
T ss_pred             cCCCcCCEEEECCEEecCC
Confidence            3667899999999999774

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=94.14  E-value=0.12  Score=34.27  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=27.5

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHh---cCCCCeEEEEcCCCH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG---AYNVPISARNILEDP  115 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~---~~~v~~~~~di~~~~  115 (169)
                      +..+|+|+.-+    .||+.|++....|+   ..++.+..++++.+.
T Consensus        19 ~Gk~vvl~Fwa----tWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~   61 (136)
T d1z5ye1          19 QGKPVLLNVWA----TWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDR   61 (136)
T ss_dssp             SSSCEEEEEEC----TTCHHHHHHHHHHHHHHHTTCCEEEEEESCCH
T ss_pred             CCCEEEEEEEc----CcCCCcCccccchhhhhhhhhhhcccccccch
Confidence            45678875554    49999998766664   456777777776553

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.015  Score=38.61  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=58.9

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcC--Ce-EEEeecCCCCCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKEN--PV-MLYMKGVPEFPQCGF   91 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~--~V-vly~k~~~~~~~C~~   91 (169)
                      .|.|..|+++.++|.++|++|.. |++.+|-+                 .+.+.+++..-  .+ -++-+.         
T Consensus         7 ~~~C~~~rka~~~L~~~~i~~~~~d~~~~p~s-----------------~~eL~~ll~~~~~~~~~lin~~---------   60 (114)
T d1z3ea1           7 SPSCTSCRKARAWLEEHEIPFVERNIFSEPLS-----------------IDEIKQILRMTEDGTDEIISTR---------   60 (114)
T ss_dssp             CTTCHHHHHHHHHHHHTTCCEEEEETTTSCCC-----------------HHHHHHHHHTCSSCGGGTBCTT---------
T ss_pred             CCCCHHHHHHHHHHHHCCCCeEEEeeeccCCC-----------------HHHHHHHHHHhccCHHHHHHhc---------
Confidence            48899999999999999999988 99987532                 24455554421  11 233221         


Q ss_pred             HHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeeccHH
Q 030914           92 SSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGSDI  145 (169)
Q Consensus        92 c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~d~  145 (169)
                      .    ...++.++...  + ..++++.+.|.+...--.-|.+..++..+=|+++
T Consensus        61 ~----~~~k~l~~~~~--~-ls~~~~i~ll~~~P~LikRPI~~~~~~~~iG~~~  107 (114)
T d1z3ea1          61 S----KVFQKLNVNVE--S-MPLQDLYRLINEHPGLLRRPIIIDEKRLQVGYNE  107 (114)
T ss_dssp             S----HHHHHHCCCGG--G-SBHHHHHHHHHHCGGGBCSCEEECSSCEEESCCT
T ss_pred             C----chhhhcccchh--h-hhhHHHHHHHHhChhheeCCEEEECCEEEEcCCH
Confidence            0    12223343321  1 2345565666554333455999988888888763

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.83  E-value=0.07  Score=35.00  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=46.4

Q ss_pred             hcCCeEEEeecCCCCCCCccH------HHHHHHHhcC--------CCCeEEEEcCCCHH-----HHHHHHHhc-CCCCCc
Q 030914           72 KENPVMLYMKGVPEFPQCGFS------SLAVRVLGAY--------NVPISARNILEDPE-----LKSAVKAFS-HWPTFP  131 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c------~~a~~~L~~~--------~v~~~~~di~~~~~-----~~~~l~~~~-g~~t~P  131 (169)
                      ++..|++|+..    .-|+-|      +....+|+..        ...|+++||...++     -++...++- .---+|
T Consensus         6 ~~v~i~VYGA~----~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYP   81 (111)
T d1xg8a_           6 QSNAVVVYGAD----VICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             SCEEEEEEECS----SCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             ceeEEEEEccc----ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceee
Confidence            45568899875    357666      4556666432        34578899966442     222333332 345679


Q ss_pred             EEEeCCeEee-ccHHHHHHH
Q 030914          132 QIFIKGEFIG-GSDIILNMH  150 (169)
Q Consensus       132 ~vfi~g~~iG-G~d~l~~~~  150 (169)
                      .|.|+|+.|| |+-.|+..+
T Consensus        82 lV~i~~eiVaEGnp~LK~I~  101 (111)
T d1xg8a_          82 LITMNDEYVADGYIQTKQIT  101 (111)
T ss_dssp             EEEETTEEEEESSCCHHHHH
T ss_pred             EEEECCEEeecCCccHHHHH
Confidence            9999999998 666565544

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=93.66  E-value=0.033  Score=34.41  Aligned_cols=58  Identities=16%  Similarity=0.077  Sum_probs=41.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEcCC--CH-HHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           92 SSLAVRVLGAYNVPISARNILE--DP-ELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        92 c~~a~~~L~~~~v~~~~~di~~--~~-~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      +.++.-+|.+.|++|+.+.+..  .. ...+++.+++...++|.+.++ |..|.....+...
T Consensus        11 s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~y   72 (80)
T d1f2ea2          11 SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLY   72 (80)
T ss_dssp             THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHH
Confidence            5678889999999998876643  22 223467788888999999874 6777766555544

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.14  Score=35.52  Aligned_cols=16  Identities=19%  Similarity=0.613  Sum_probs=13.5

Q ss_pred             cCCCCCcEEEeCCeEe
Q 030914          125 SHWPTFPQIFIKGEFI  140 (169)
Q Consensus       125 ~g~~t~P~vfi~g~~i  140 (169)
                      .|-..+|.++|||+++
T Consensus       145 ~gI~gTPt~vInGky~  160 (188)
T d1fvka_         145 VQLRGVPAMFVNGKYQ  160 (188)
T ss_dssp             TTCCSSSEEEETTTEE
T ss_pred             cCCccccEEEECCEEE
Confidence            4778999999999864

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=93.34  E-value=0.046  Score=33.66  Aligned_cols=58  Identities=16%  Similarity=0.101  Sum_probs=40.7

Q ss_pred             HHHHHHHHhcCCCCeEEEEcCC--CHHHH-HHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           92 SSLAVRVLGAYNVPISARNILE--DPELK-SAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        92 c~~a~~~L~~~~v~~~~~di~~--~~~~~-~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      |.+++-+|.+.|++|+.+.|+-  ..+.+ .++.+.+.+.++|.+.++ |..+-....+...
T Consensus        11 s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~y   72 (80)
T d1pmta2          11 SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQY   72 (80)
T ss_dssp             THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHH
Confidence            6889999999999998776643  23322 347778888999999875 5666554444443

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=92.67  E-value=0.027  Score=34.15  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=27.7

Q ss_pred             hhhccCCCCCCCCcchHHHHHHHHhCCCCccc-ccCCCc
Q 030914            7 NLIFKGIASYPSARSSRIVSGSLYHNGMKYST-DVPNDP   44 (169)
Q Consensus         7 ~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~   44 (169)
                      ++|-|     |.|+|+.++.++|.+.|++|.. ++..|+
T Consensus         8 ~iYs~-----~~C~~C~~ak~lL~~~~i~~~~~~v~~~~   41 (74)
T d1nm3a1           8 SIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDA   41 (74)
T ss_dssp             EEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTC
T ss_pred             EEEEC-----CCCHHHHHHHHHHHHcCCCeEEEEccCcH
Confidence            55644     8999999999999999999988 876653

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.56  E-value=0.18  Score=30.67  Aligned_cols=67  Identities=9%  Similarity=-0.059  Sum_probs=48.7

Q ss_pred             CCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeC-CeEeeccHHHHHH
Q 030914           74 NPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIK-GEFIGGSDIILNM  149 (169)
Q Consensus        74 ~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~-g~~iGG~d~l~~~  149 (169)
                      ...++|..     +. +.+..++-++++.+++|+.++..   ...+++.+.+.+.++|.+..+ |..+-....+...
T Consensus         2 s~~tLY~~-----~~-~rs~~~~~~l~~~~~d~~~~~~~---~~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~Y   69 (75)
T d1nhya2           2 SQGTLYAN-----FR-IRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYY   69 (75)
T ss_dssp             TTCEEECC-----SS-HHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHH
T ss_pred             CCeEEecC-----CC-chHHHHHHHHHhcCccccccCcc---cCCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHH
Confidence            45678886     44 35778888999999999876643   344577888999999999864 6777665554443

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=92.54  E-value=0.24  Score=33.44  Aligned_cols=61  Identities=13%  Similarity=0.063  Sum_probs=35.1

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHh----cCC--CCe--EEEEcCCCH--------------------HHHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLG----AYN--VPI--SARNILEDP--------------------ELKSAVKA  123 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~~--v~~--~~~di~~~~--------------------~~~~~l~~  123 (169)
                      +...|+|+.-.    .||+.|++....|.    +++  ..+  ..+.++.+.                    ..+..|.+
T Consensus        27 ~GK~vll~FwA----tWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~  102 (144)
T d1i5ga_          27 AGKTVFFYFSA----SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTT  102 (144)
T ss_dssp             TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEEEe----cCCchHhhhhHhHHHHHHHHHhccCcEEEEEeccccHHHHHHHHHhCCCCceeeEChHHHHHHHH
Confidence            45567776655    59999997665442    222  234  444454332                    22334555


Q ss_pred             hcCCCCCcEEE-eC
Q 030914          124 FSHWPTFPQIF-IK  136 (169)
Q Consensus       124 ~~g~~t~P~vf-i~  136 (169)
                      ..|...+|.++ ||
T Consensus       103 ~y~v~~iPt~~lid  116 (144)
T d1i5ga_         103 GFDVKSIPTLVGVE  116 (144)
T ss_dssp             HTTCCSSSEEEEEE
T ss_pred             HCCCCCcCEEEEEe
Confidence            56778899765 54

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.029  Score=34.22  Aligned_cols=30  Identities=10%  Similarity=0.297  Sum_probs=26.9

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      |.|+|+.++.++|.+.|++|.. |+..|++.
T Consensus         9 ~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~   39 (76)
T d1h75a_           9 NDCVQCHATKRAMENRGFDFEMINVDRVPEA   39 (76)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCEEEETTTCHHH
T ss_pred             CCCccHHHHHHHHHhcCceeEEEeecCCHHH
Confidence            8899999999999999999998 88877653

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=92.30  E-value=0.032  Score=33.68  Aligned_cols=30  Identities=23%  Similarity=0.454  Sum_probs=27.0

Q ss_pred             CCCcchHHHHHHHHhCCCCccc-ccCCCccc
Q 030914           17 PSARSSRIVSGSLYHNGMKYST-DVPNDPDT   46 (169)
Q Consensus        17 p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~   46 (169)
                      |.|+|+.++.++|.++|++|.. ++..|++.
T Consensus         9 ~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~   39 (74)
T d1r7ha_           9 PACVQCTATKKALDRAGLAYNTVDISLDDEA   39 (74)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCEEEETTTCHHH
T ss_pred             CCChhHHHHHHHHHHcCCceEEEEccCCHHH
Confidence            8999999999999999999998 88877654

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=92.07  E-value=0.48  Score=28.65  Aligned_cols=68  Identities=16%  Similarity=0.110  Sum_probs=46.2

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCH-HHHHHHHHh--cCCCCCcEEEeCCeEeeccHHHHH
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDP-ELKSAVKAF--SHWPTFPQIFIKGEFIGGSDIILN  148 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~-~~~~~l~~~--~g~~t~P~vfi~g~~iGG~d~l~~  148 (169)
                      |++.|..      .=+.+..++-+|...|++|+.+.++... +.....+..  ....++|.+..||..+.....+..
T Consensus         2 P~L~Y~~------~rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~r   72 (80)
T d1duga2           2 PILGYWK------IKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIR   72 (80)
T ss_dssp             CEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHH
T ss_pred             CEEEEcC------CchhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHH
Confidence            5667764      2367888888999999999988876532 322222222  246799999999888776555444

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.07  E-value=0.16  Score=33.40  Aligned_cols=64  Identities=16%  Similarity=0.107  Sum_probs=33.8

Q ss_pred             HHHHhhcCC--eEEEeecCCCCCCCccHH-----HHHHHHhcC--CCCeEEEEcCCCH-HHHHHHHHhcC--CCCCcEEE
Q 030914           67 VEQDVKENP--VMLYMKGVPEFPQCGFSS-----LAVRVLGAY--NVPISARNILEDP-ELKSAVKAFSH--WPTFPQIF  134 (169)
Q Consensus        67 i~~~~~~~~--Vvly~k~~~~~~~C~~c~-----~a~~~L~~~--~v~~~~~di~~~~-~~~~~l~~~~g--~~t~P~vf  134 (169)
                      .++++.+++  +|.|..     |||++|+     ++-+-+.+.  .+.+-.+|+.... ..-..+....+  ...+|.++
T Consensus        12 Fd~~v~~~~~~lV~Fya-----~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~   86 (122)
T d2c0ga2          12 FEKTVERFPYSVVKFDI-----ASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIF   86 (122)
T ss_dssp             HHHHHTTSSEEEEEEEE-----SSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEE
T ss_pred             HHHHHhcCCcEEEEEEC-----CCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEE
Confidence            455666666  456666     8999996     333333322  3445667775421 11122333322  35789884


Q ss_pred             e
Q 030914          135 I  135 (169)
Q Consensus       135 i  135 (169)
                      +
T Consensus        87 ~   87 (122)
T d2c0ga2          87 L   87 (122)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.59  E-value=0.11  Score=34.68  Aligned_cols=55  Identities=11%  Similarity=0.224  Sum_probs=35.8

Q ss_pred             CeEEEeecCCCCCCCccHHHHHHHHhcC-----CCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEe
Q 030914           75 PVMLYMKGVPEFPQCGFSSLAVRVLGAY-----NVPISARNILEDPELKSAVKAFSHWPTFPQIFI  135 (169)
Q Consensus        75 ~Vvly~k~~~~~~~C~~c~~a~~~L~~~-----~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi  135 (169)
                      .+++|..+    ..|+.|..++++|++.     +|.++.++... ++.++.. +..|....|.+.|
T Consensus        25 ~l~~~~~~----~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~-~e~~~~~-~~~~ver~Ps~~i   84 (119)
T d1a8la1          25 KLIVFVRK----DHCQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEGKELA-KRYRIDRAPATTI   84 (119)
T ss_dssp             EEEEEECS----SSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHHHHHH-HHTTCCSSSEEEE
T ss_pred             EEEEEecC----CCchhHHHHHHHHHHHHhhCCCeEEEEeccCc-chhhhHH-HhhccccCceEEE
Confidence            35677643    4799999999999765     35677777753 3333333 3345667887766

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.18  Score=34.35  Aligned_cols=99  Identities=11%  Similarity=0.024  Sum_probs=58.3

Q ss_pred             CCCCCcchHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHH
Q 030914           15 SYPSARSSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSS   93 (169)
Q Consensus        15 ~~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~   93 (169)
                      ..|.|.-|+++.++|.++|+.|.. +++.++-+             .+++.+.++.+-. ..-.++.+.      .    
T Consensus         6 ~~p~Cs~srkal~~L~~~~i~~~~idy~k~pls-------------~~eL~~ll~~lg~-~~~~Li~~~------~----   61 (138)
T d1j9ba_           6 HNPACGTSRNTLEMIRNSGTEPTIILYLENPPS-------------RDELVKLIADMGI-SVRALLRKN------V----   61 (138)
T ss_dssp             CCTTCHHHHHHHHHHHHTTCCCEEECTTTSCCC-------------HHHHHHHHHHHTS-CHHHHBCCS------S----
T ss_pred             ECCCCHHHHHHHHHHHHCCCCeEEEeeccCCCC-------------HHHHHHHHHHccC-CHHHHHHcc------C----
Confidence            358899999999999999999988 99987543             2233333333211 111123221      0    


Q ss_pred             HHHHHHhcCCCCeEEEEcCCCHHHHHHHHHhcCCCCCcEEEeCCeEeecc
Q 030914           94 LAVRVLGAYNVPISARNILEDPELKSAVKAFSHWPTFPQIFIKGEFIGGS  143 (169)
Q Consensus        94 ~a~~~L~~~~v~~~~~di~~~~~~~~~l~~~~g~~t~P~vfi~g~~iGG~  143 (169)
                         ....+.++..   +...+.++.+.|.+....-.-|.|.-+++.+=|.
T Consensus        62 ---~~~k~l~l~~---~~ls~~e~i~ll~~~P~LikRPIvv~~~~a~Igr  105 (138)
T d1j9ba_          62 ---EPYEQLGLAE---DKFTDDQLIDFMLQHPILINRPIVVTPLGTRLCR  105 (138)
T ss_dssp             ---HHHHHTTTTS---SCCCHHHHHHHHHHSGGGBCSCEEEETTEEEECS
T ss_pred             ---chhhhcCCCc---ccCCHHHHHHHHHhCchhEecCEEEECCEEEEeC
Confidence               1233334432   1224556666666654445669999999876553

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=91.30  E-value=0.45  Score=31.60  Aligned_cols=39  Identities=10%  Similarity=0.067  Sum_probs=24.0

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhcC----CCCeEEEEcCCC
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGAY----NVPISARNILED  114 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~----~v~~~~~di~~~  114 (169)
                      +...|+|+.-+    .||++|+.....|++.    ++.+..+.+...
T Consensus        30 kgK~vll~fwa----~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~   72 (144)
T d1knga_          30 KGKVSLVNVWA----SWCVPCHDEAPLLTELGKDKRFQLVGINYKDA   72 (144)
T ss_dssp             TTSCEEEEEEC----TTCHHHHHHHHHHHHHTTCTTSEEEEEEESCC
T ss_pred             CCCEEEEEeec----cccccccccCchhhhhhhccCceeEEEEeeec
Confidence            33566665555    5999999877766543    444445555443

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=90.27  E-value=0.45  Score=31.27  Aligned_cols=64  Identities=20%  Similarity=0.345  Sum_probs=36.9

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHh-------cCCCCeEEEEcCCCH-HHHHHHHHh-----------------cCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLG-------AYNVPISARNILEDP-ELKSAVKAF-----------------SHW  127 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~-------~~~v~~~~~di~~~~-~~~~~l~~~-----------------~g~  127 (169)
                      ...++|+.-+    ++||+|.+....|.       +.++.+..++++.++ ++++.+.+.                 .|.
T Consensus        25 gk~~li~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  100 (137)
T d1st9a_          25 GKGVFLNFWG----TWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV  100 (137)
T ss_dssp             TSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHTTCCSCEEEETTSHHHHHTTC
T ss_pred             CCEEEEEEee----ccccceeecccccccccccccccccccccccccchhhhHHHHHHHcCCCccccccccchhhhhhhc
Confidence            3445555443    69999986666554       345666666765544 444444332                 244


Q ss_pred             CCCcEEEe---CCeEe
Q 030914          128 PTFPQIFI---KGEFI  140 (169)
Q Consensus       128 ~t~P~vfi---~g~~i  140 (169)
                      .++|.+|+   +|+.+
T Consensus       101 ~~~P~~~liD~~G~i~  116 (137)
T d1st9a_         101 SPLPTTFLINPEGKVV  116 (137)
T ss_dssp             CSSCEEEEECTTSEEE
T ss_pred             cccceEEEECCCCEEE
Confidence            57787766   55544

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.08  E-value=0.19  Score=33.29  Aligned_cols=57  Identities=12%  Similarity=0.184  Sum_probs=35.0

Q ss_pred             CCCCcccccCCcccHHHHHHHHhhc-CCeEEEeecCCCCCCCccHHHHHHHHhcC------CCCeEEEEcCC
Q 030914           49 DFRPTSKVDASGLSLKEVVEQDVKE-NPVMLYMKGVPEFPQCGFSSLAVRVLGAY------NVPISARNILE  113 (169)
Q Consensus        49 ~~k~~s~~pt~~~~~~~~i~~~~~~-~~Vvly~k~~~~~~~C~~c~~a~~~L~~~------~v~~~~~di~~  113 (169)
                      +|...-.|.    +.++.++....+ .+|+|+..+    +||++|++....+.+.      ...|..+.|+.
T Consensus         4 ~~~~~i~w~----~~~~al~~A~~~~Kpvlv~F~a----~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~   67 (135)
T d1sena_           4 GFGDHIHWR----TLEDGKKEAAASGLPLMVIIHK----SWCGACKALKPKFAESTEISELSHNFVMVNLED   67 (135)
T ss_dssp             TSCTTSCBC----CHHHHHHHHHHHTCCEEEEEEC----TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEG
T ss_pred             CCCCceeee----EHHHHHHHHHHcCCcEEEEEEe----cCCCCceecchhhhhhHHHHHhcCCcEEEeCCC
Confidence            344455673    355666665554 456665544    7999999998866432      24566666654

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=90.00  E-value=0.73  Score=30.48  Aligned_cols=40  Identities=18%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             HHhhcCCeEEEeecCCCCCCCccHHHHHHHHh----cC--CCCeEEEEcC
Q 030914           69 QDVKENPVMLYMKGVPEFPQCGFSSLAVRVLG----AY--NVPISARNIL  112 (169)
Q Consensus        69 ~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L~----~~--~v~~~~~di~  112 (169)
                      .......++|+.-+    +|||+|.+....|+    ++  ++.+..+.+.
T Consensus        25 ~~~~~k~vvl~f~a----~~C~~C~~~~p~l~~l~~~~~~~~~~i~v~~~   70 (143)
T d2b5xa1          25 QLIGEKPTLIHFWS----ISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMP   70 (143)
T ss_dssp             HHTTTSCEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEECC
T ss_pred             HHhCCCEEEEEEEc----CCCcchhhhhhhhhhhhhhhhccccceeEEee
Confidence            33455667665554    69999997765443    22  4555555553

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.84  E-value=0.062  Score=33.69  Aligned_cols=60  Identities=17%  Similarity=0.052  Sum_probs=41.3

Q ss_pred             cCCeEEEeecCCCCCCCccHHHHHHHHhcCCCCeEEEEcCCCHHH--HHHHHHhcCCCCCcEEEeCC
Q 030914           73 ENPVMLYMKGVPEFPQCGFSSLAVRVLGAYNVPISARNILEDPEL--KSAVKAFSHWPTFPQIFIKG  137 (169)
Q Consensus        73 ~~~Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~~~~~di~~~~~~--~~~l~~~~g~~t~P~vfi~g  137 (169)
                      ++.+.||.-     +..+.+..++-+|...|++|+.+.++.....  ..+.++......+|.+.+++
T Consensus         5 M~~~~L~Y~-----~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~   66 (87)
T d2fnoa2           5 MNTFDLYYW-----PVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRE   66 (87)
T ss_dssp             CBSEEEECC-----SSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETT
T ss_pred             CCCeEEEEC-----CCCcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecC
Confidence            456777765     4456788899999999999998776432222  12233445678999999864

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.32  E-value=0.084  Score=34.82  Aligned_cols=74  Identities=8%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             HHHHHHhhcCC--eEEEeecCCCCCCCccHHHHHHHHhcCCCC-eEEEEcCC-CHHHHHHHHHhc--CCCCCcEE--EeC
Q 030914           65 EVVEQDVKENP--VMLYMKGVPEFPQCGFSSLAVRVLGAYNVP-ISARNILE-DPELKSAVKAFS--HWPTFPQI--FIK  136 (169)
Q Consensus        65 ~~i~~~~~~~~--Vvly~k~~~~~~~C~~c~~a~~~L~~~~v~-~~~~di~~-~~~~~~~l~~~~--g~~t~P~v--fi~  136 (169)
                      +-.++++..++  +|.|.....-.++||.|+++-..+.+..-. ...+++.. |-..-..+....  .-..+|.|  |-+
T Consensus        12 ~nFd~~i~~~~~~lV~F~~~wc~~~~~~~~~~la~~~~~~~~~~~~~V~~~~vd~~~n~~l~~~~~~~I~~yPTi~~f~~   91 (122)
T d1g7ea_          12 VTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRD   91 (122)
T ss_dssp             HHHHHHGGGSSEEEEEEECSSCCTTTTHHHHHHHHHGGGCSSEEEEEEESCCTTSCHHHHHHHHHTCSSSSCEEEEEEES
T ss_pred             HhHHHHHhhCCeEEEEEecCCcCcccCHHHHHHHHHHHHHHHHhhhccceeeccccccHHHHHhhcccccCCCeEEEEec
Confidence            34567777766  455644222335667788888888765322 23454432 222223343332  24578877  667


Q ss_pred             Ce
Q 030914          137 GE  138 (169)
Q Consensus       137 g~  138 (169)
                      |.
T Consensus        92 G~   93 (122)
T d1g7ea_          92 GD   93 (122)
T ss_dssp             SC
T ss_pred             Cc
Confidence            74

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.13  E-value=0.019  Score=38.01  Aligned_cols=30  Identities=10%  Similarity=-0.002  Sum_probs=26.8

Q ss_pred             CCCCcchHHHHHHHHhCCCCccc-ccCCCcc
Q 030914           16 YPSARSSRIVSGSLYHNGMKYST-DVPNDPD   45 (169)
Q Consensus        16 ~p~cgfs~~~~~~l~~~g~~~~s-~vl~d~~   45 (169)
                      .|.|+-|+++.++|.++|++|.. |++.++-
T Consensus         7 ~p~Cs~srka~~~L~~~~i~~~~idy~k~pl   37 (114)
T d1rw1a_           7 IKACDTMKKARTWLDEHKVAYDFHDYKAVGI   37 (114)
T ss_dssp             CSSCHHHHHHHHHHHHTTCCEEEEEHHHHCC
T ss_pred             CCCChHHHHHHHHHHHcCCCeEEEEccccCC
Confidence            48999999999999999999988 8888753

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=89.08  E-value=0.28  Score=33.96  Aligned_cols=48  Identities=17%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHHhc-------CCCCeEEEEcCC--CHHHHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVLGA-------YNVPISARNILE--DPELKSAVKA  123 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L~~-------~~v~~~~~di~~--~~~~~~~l~~  123 (169)
                      +...|+|+.-.    +|||.|......|.+       .++.+..+.++.  .+.+++.+++
T Consensus        55 kGK~vll~F~a----~wC~~C~~~~~~l~~~~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~  111 (176)
T d1jfua_          55 RGKTLLVNLWA----TWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEKPKTFLKE  111 (176)
T ss_dssp             TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHH
T ss_pred             CCCEEEEEecc----CcccchHHHHHhhhhccccccccccccccccccccchhhhhhhHhh
Confidence            44556665544    699999766554433       233444555542  2344444444

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=88.93  E-value=0.14  Score=32.97  Aligned_cols=22  Identities=14%  Similarity=0.356  Sum_probs=16.6

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcC
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAY  102 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~  102 (169)
                      +|.|..     |||++|++....+++.
T Consensus        24 lV~fya-----~wC~~Ck~~~p~~~~l   45 (116)
T d2djja1          24 LIEFYA-----PWCGHCKALAPKYEEL   45 (116)
T ss_dssp             EEEEEC-----SSCTTHHHHHHHHHHH
T ss_pred             EEEEEe-----cccccccccchHHHHH
Confidence            455555     8999999988887654

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.51  E-value=0.67  Score=30.53  Aligned_cols=60  Identities=12%  Similarity=0.136  Sum_probs=35.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHH----hcCC----CCeEEEEcCCCH--------------------HHHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVL----GAYN----VPISARNILEDP--------------------ELKSAVKA  123 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~~----v~~~~~di~~~~--------------------~~~~~l~~  123 (169)
                      +...|+||.-+    .|||.|......|    +++.    +.+..+.++.+.                    .....+.+
T Consensus        25 ~GK~vll~Fwa----~wC~~C~~~~~~l~~l~~~~~~~~~~~~v~is~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~  100 (144)
T d1o8xa_          25 AGKLVFFYFSA----SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSK  100 (144)
T ss_dssp             TTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHH
T ss_pred             CCCEEEEEecc----ccccccccccchhHHhhhhcccccccccccccccccHHHHHHHHhhccccceeeecccchhhHHH
Confidence            44567777665    5999998766544    3332    334444554321                    12234555


Q ss_pred             hcCCCCCcEEEe
Q 030914          124 FSHWPTFPQIFI  135 (169)
Q Consensus       124 ~~g~~t~P~vfi  135 (169)
                      ..+...+|++|+
T Consensus       101 ~y~v~~~Pt~~l  112 (144)
T d1o8xa_         101 HFNVESIPTLIG  112 (144)
T ss_dssp             HTTCCSSSEEEE
T ss_pred             HcCCCcCCEEEE
Confidence            567888998865

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=88.21  E-value=0.35  Score=32.33  Aligned_cols=67  Identities=19%  Similarity=0.205  Sum_probs=38.2

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHHHH----hcC----CCCeEEEEcCCCHH--------------------HHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVRVL----GAY----NVPISARNILEDPE--------------------LKSAVKA  123 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~~L----~~~----~v~~~~~di~~~~~--------------------~~~~l~~  123 (169)
                      +...|+|+.-.    .||+.|++....|    +++    ++.+..+.++.+.+                    ....+.+
T Consensus        27 ~GK~vvl~Fwa----twC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  102 (144)
T d1o73a_          27 VGKTVFLYFSA----SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGK  102 (144)
T ss_dssp             TTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEEeCh----hhCccchhhhHHHHHHHHHHhhccCeEEEEEecchhHHHHHHHHHhccccceeeeccchHHHHHH
Confidence            44566777655    5999999766554    332    23334445543221                    2223444


Q ss_pred             hcCCCCCcEEEe---C-CeEeec
Q 030914          124 FSHWPTFPQIFI---K-GEFIGG  142 (169)
Q Consensus       124 ~~g~~t~P~vfi---~-g~~iGG  142 (169)
                      ..|...+|.+|+   + |+.|+.
T Consensus       103 ~y~v~~~Pt~~lID~~~G~Ii~~  125 (144)
T d1o73a_         103 TFGVESIPTLITINADTGAIIGT  125 (144)
T ss_dssp             HHTCCSSSEEEEEETTTCCEEES
T ss_pred             HcCCCcCCEEEEEECCCCEEEee
Confidence            456778999864   3 667764

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=86.86  E-value=0.54  Score=28.41  Aligned_cols=58  Identities=14%  Similarity=0.019  Sum_probs=39.0

Q ss_pred             ccHHHHHHHHhcCCCCeEEEEcCCC--HHHHHHH-HHhcCCCCCcEEEeCCeEeeccHHHH
Q 030914           90 GFSSLAVRVLGAYNVPISARNILED--PELKSAV-KAFSHWPTFPQIFIKGEFIGGSDIIL  147 (169)
Q Consensus        90 ~~c~~a~~~L~~~~v~~~~~di~~~--~~~~~~l-~~~~g~~t~P~vfi~g~~iGG~d~l~  147 (169)
                      +.+..++-+|...|++|+.+.++.+  ++..... +......++|.+-.+|..|....-+.
T Consensus        11 grae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~   71 (80)
T d1fhea2          11 GLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIM   71 (80)
T ss_dssp             TTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHH
T ss_pred             hHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHH
Confidence            5678888899999999999888653  2222211 11234678999988888776544333

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=85.62  E-value=0.49  Score=34.76  Aligned_cols=64  Identities=20%  Similarity=0.184  Sum_probs=38.7

Q ss_pred             eEEEeecCCCCCCCccHHHHHHHHhcCC----CCeEEE-----------EcCCCHHH---HHHHHHhcCCC--CCcEEEe
Q 030914           76 VMLYMKGVPEFPQCGFSSLAVRVLGAYN----VPISAR-----------NILEDPEL---KSAVKAFSHWP--TFPQIFI  135 (169)
Q Consensus        76 Vvly~k~~~~~~~C~~c~~a~~~L~~~~----v~~~~~-----------di~~~~~~---~~~l~~~~g~~--t~P~vfi  135 (169)
                      |.+|+.     .+|..|-.|-++|.++.    |=.-.+           |-...+..   +..+....|.+  ..||++|
T Consensus         9 VElFTS-----qgCssCPpAd~~L~~L~~~~~Vi~La~HVdYWd~lGw~D~fa~~~~t~RQ~~Y~~~~g~~~vyTPq~vv   83 (225)
T d2axoa1           9 VELFTS-----QGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQAIL   83 (225)
T ss_dssp             EEEEEC-----TTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEEEE
T ss_pred             EEEeeC-----CCCCCCHHHHHHHHHhhCCCCEEEEEeccccccccCCCCCCCCchhhHHHHHHHHhcCCCCCCceeEEE
Confidence            669998     69999999999887663    211112           22233333   23344444443  3599999


Q ss_pred             CCe-EeeccH
Q 030914          136 KGE-FIGGSD  144 (169)
Q Consensus       136 ~g~-~iGG~d  144 (169)
                      ||+ ...|.+
T Consensus        84 nG~~~~~gs~   93 (225)
T d2axoa1          84 NGRDHVKGAD   93 (225)
T ss_dssp             TTTEEEETTC
T ss_pred             eCcccccccC
Confidence            996 445543

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.24  E-value=0.11  Score=32.85  Aligned_cols=63  Identities=17%  Similarity=0.258  Sum_probs=40.1

Q ss_pred             chHHHHHHHHhCCCCccc-ccCCCccccCCCCCcccccCCcccHHHHHHHHhhcCCeEEEeecCCCCCCCccHHHHHHHH
Q 030914           21 SSRIVSGSLYHNGMKYST-DVPNDPDTHEDFRPTSKVDASGLSLKEVVEQDVKENPVMLYMKGVPEFPQCGFSSLAVRVL   99 (169)
Q Consensus        21 fs~~~~~~l~~~g~~~~s-~vl~d~~~~~~~k~~s~~pt~~~~~~~~i~~~~~~~~Vvly~k~~~~~~~C~~c~~a~~~L   99 (169)
                      .+.++..+|..+|++|.. |+..|++.++.+...+.|+.              ...=.||..+    ..++-+....++.
T Consensus        20 ~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~--------------~t~Pqifv~~----~~iGg~del~~~~   81 (93)
T d1t1va_          20 QQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPK--------------ATPPQIVNGN----HYCGDYELFVEAV   81 (93)
T ss_dssp             HHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTT--------------CCSCEEEETT----EEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCC--------------ceeEEEEECC----EEEecHHHHHHHH
Confidence            477999999999999999 99888665544433333210              0112355554    3567777777665


Q ss_pred             hc
Q 030914          100 GA  101 (169)
Q Consensus       100 ~~  101 (169)
                      ++
T Consensus        82 e~   83 (93)
T d1t1va_          82 EQ   83 (93)
T ss_dssp             HT
T ss_pred             HC
Confidence            54

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.89  E-value=0.065  Score=34.75  Aligned_cols=27  Identities=19%  Similarity=0.137  Sum_probs=22.9

Q ss_pred             hhhhccCCCCCCCCcchHHHHHHHHhCCCCcc
Q 030914            6 SNLIFKGIASYPSARSSRIVSGSLYHNGMKYS   37 (169)
Q Consensus         6 ~~~~~kg~~~~p~cgfs~~~~~~l~~~g~~~~   37 (169)
                      +++|.|     |.|+|+.++.++|.+.|+.+.
T Consensus        14 Vviysk-----~~Cp~C~~ak~ll~~~~~~~~   40 (105)
T d1ktea_          14 VVVFIK-----PTCPFCRKTQELLSQLPFKEG   40 (105)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHSCBCTT
T ss_pred             EEEEEC-----CCCchHHHHHHHHHHhCCccc
Confidence            567776     789999999999999998754

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=0.13  Score=37.00  Aligned_cols=50  Identities=18%  Similarity=0.129  Sum_probs=33.6

Q ss_pred             HHHHHHHhcCCCCeEEEEc-CCCHHHHHHHH------HhcCCCCCcEEEeCCeEeec
Q 030914           93 SLAVRVLGAYNVPISARNI-LEDPELKSAVK------AFSHWPTFPQIFIKGEFIGG  142 (169)
Q Consensus        93 ~~a~~~L~~~~v~~~~~di-~~~~~~~~~l~------~~~g~~t~P~vfi~g~~iGG  142 (169)
                      ..+++++.+.|++-+.++- ..++.++..+.      ...|-..+|.++|||+++-+
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~   63 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeeec
Confidence            3577888888987544322 23444444443      33588999999999998754

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=81.86  E-value=1.7  Score=28.38  Aligned_cols=22  Identities=14%  Similarity=0.345  Sum_probs=14.3

Q ss_pred             hcCCeEEEeecCCCCCCCccHHHHHH
Q 030914           72 KENPVMLYMKGVPEFPQCGFSSLAVR   97 (169)
Q Consensus        72 ~~~~Vvly~k~~~~~~~C~~c~~a~~   97 (169)
                      +..+|+|+.-+    .|||+|.+...
T Consensus        22 ~gk~vvl~F~a----~wC~~C~~~~~   43 (143)
T d2fy6a1          22 KDKPTLIKFWA----SWCPLCLSELG   43 (143)
T ss_dssp             TTSCEEEEEEC----TTCHHHHTTHH
T ss_pred             CCCEEEEEEEC----CCCccccccCc
Confidence            34566666554    59999996443