Citrus Sinensis ID: 030935
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 169 | 2.2.26 [Sep-21-2011] | |||||||
| Q6DJF8 | 234 | Methyltransferase-like pr | N/A | no | 0.733 | 0.529 | 0.436 | 1e-26 | |
| A2AA28 | 253 | Methyltransferase-like pr | yes | no | 0.739 | 0.494 | 0.417 | 1e-24 | |
| Q5RJL2 | 225 | Methyltransferase-like pr | yes | no | 0.792 | 0.595 | 0.371 | 2e-23 | |
| Q86XA0 | 190 | Methyltransferase-like pr | yes | no | 0.609 | 0.542 | 0.447 | 6e-22 | |
| Q96AZ1 | 226 | Protein-lysine methyltran | no | no | 0.668 | 0.5 | 0.327 | 2e-10 | |
| Q28IN4 | 224 | Protein-lysine methyltran | no | no | 0.579 | 0.437 | 0.356 | 9e-10 | |
| A4FV98 | 226 | Protein-lysine methyltran | no | no | 0.668 | 0.5 | 0.327 | 2e-09 | |
| Q8WXB1 | 218 | Protein-lysine methyltran | no | no | 0.591 | 0.458 | 0.362 | 4e-09 | |
| A4IGU3 | 215 | Protein-lysine methyltran | no | no | 0.568 | 0.446 | 0.365 | 2e-08 | |
| Q8CDZ2 | 244 | Protein-lysine methyltran | no | no | 0.615 | 0.426 | 0.341 | 5e-08 |
| >sp|Q6DJF8|MET23_XENLA Methyltransferase-like protein 23 OS=Xenopus laevis GN=mettl23 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
D+ + I E + +YG++VWPC+V+LA+Y+W R + V+E+GAG SLPG++AA
Sbjct: 22 KDEQKMRVTIPEVLNCQYGMYVWPCAVVLAQYLWYHRKNLADKRVLEVGAGVSLPGILAA 81
Query: 90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGAD 147
K G+ V L+D + + L+N RR C+MN + V+GLTWG + + DL P +IILG+D
Sbjct: 82 KCGAKVILSDSAEMPQCLENCRRSCKMNNIVGVPVIGLTWGEVSPDLLDLPPIDIILGSD 141
Query: 148 VFYDAS 153
VFY+
Sbjct: 142 VFYEPK 147
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Probable methyltransferase. Xenopus laevis (taxid: 8355) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|A2AA28|MET23_MOUSE Methyltransferase-like protein 23 OS=Mus musculus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 80/127 (62%), Gaps = 2/127 (1%)
Query: 27 VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
V ++ + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG+
Sbjct: 42 VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101
Query: 87 VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIIL 144
+AAK G+ V L+D S L R+ C+MN L V+GLTWG + I L P +IIL
Sbjct: 102 LAAKCGAKVILSDSSEFPHCLDICRQSCQMNNLPQVEVVGLTWGHISKDILSLPPQDIIL 161
Query: 145 GADVFYD 151
G+DVF++
Sbjct: 162 GSDVFFE 168
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5RJL2|MET23_RAT Methyltransferase-like protein 23 OS=Rattus norvegicus GN=Mettl23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 85/140 (60%), Gaps = 6/140 (4%)
Query: 30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
+D + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG++AA
Sbjct: 17 ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76
Query: 90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGAD 147
K G+ VTL+D L + C+MN L +++GLTWG + L P +IILG+D
Sbjct: 77 KCGAKVTLSDSPELPHCLDICWQSCQMNNLPQVQIVGLTWGHISKDTLSLPPQDIILGSD 136
Query: 148 VFYDASGKICAFEILICSLF 167
VF++ FE ++ +++
Sbjct: 137 VFFEPED----FESILATVY 152
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Probable methyltransferase. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q86XA0|MET23_HUMAN Methyltransferase-like protein 23 OS=Homo sapiens GN=METTL23 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Query: 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108
++VWPC+V+LA+Y+W R G ++E+GAG SLPG++AAK G+ V L+D S L+
Sbjct: 1 MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLE 60
Query: 109 NMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGADVFYD 151
R+ C+MN L + +V+GLTWG + + L P +IIL +DVF++
Sbjct: 61 VCRQSCQMNNLPHLQVVGLTWGHISWDLLALPPQDIILASDVFFE 105
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q96AZ1|MT21B_HUMAN Protein-lysine methyltransferase METTL21B OS=Homo sapiens GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 37 IAIIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN 94
+ I +N G+ VW ++ L Y Q F G V+ELGAGT + G++AA G +
Sbjct: 40 LTITQNFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD 99
Query: 95 VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150
VT+TD +E ++ + +V L+WG +D +F N +++LGAD+ Y
Sbjct: 100 VTITDLPLALEQIQGNVQANVPAGGQAQVRALSWG-IDHHVFPANYDLVLGADIVY 154
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 3/101 (2%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-EVLKN 109
VW ++ L Y +Q+ F G V+ELGAGT + G++ + +G +VTLTD + + ++ KN
Sbjct: 57 VWDAALFLCGYFEEQKLDFKGKKVIELGAGTGIVGILVSLLGGHVTLTDLPHALSQIQKN 116
Query: 110 MRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150
+ N +V L+WG LD F + + +LGAD+ Y
Sbjct: 117 VSANVSSNN-PPQVCALSWG-LDQEKFPQDYDFVLGADIVY 155
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Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
Query: 37 IAIIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN 94
+ I EN G+ VW ++ L Y Q F G V+ELGAGT + G++AA G +
Sbjct: 40 LNITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGD 99
Query: 95 VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150
VT+TD +E ++ + +V L+WG +D +F + +++LGAD+ Y
Sbjct: 100 VTITDLPLVLEQIQGNVQANVPPGGRAQVRALSWG-IDQHVFPGDYDLVLGADIVY 154
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNM 110
VW +++L+ Y+ G + VELGAGT L G+VAA +G++VT+TD +E LK+
Sbjct: 46 VWDAAIVLSTYLEMGAVELRGRSAVELGAGTGLVGIVAALLGAHVTITDRKVALEFLKSN 105
Query: 111 RRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGADVFY 150
+ + + V LTWG S ++ILGAD+ Y
Sbjct: 106 VQANLPPHIQTKTVVKELTWGQNLGSFSPGEFDLILGADIIY 147
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Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-N 109
VW +++L Y+ + ++V+ELGAGT L G+VAA +G+ VT+TD +E L+ N
Sbjct: 46 VWDAALVLCMYLESEGIHLQNSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMN 105
Query: 110 MRRVCEMNKLN-CRVMGLTWG--FLDASIFDLNPNIILGADVFY 150
+R + L+ V L WG + S +D ILGAD+ Y
Sbjct: 106 VRDNIPKDSLHRVSVRALNWGKSLEEFSTYDF----ILGADIIY 145
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Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8CDZ2|MT21E_MOUSE Protein-lysine methyltransferase METTL21E OS=Mus musculus GN=Mettl21e PE=2 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Query: 44 KEEYGLFVWPCSVILAEYV--WQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDS 101
K+ YG FVWP +++L ++ ++Y NV+E+GAGT L +VA+ +G+ V TD
Sbjct: 61 KDCYGAFVWPSALVLCYFLETHAKQYNMVDKNVIEIGAGTGLVSIVASLLGARVIATDLP 120
Query: 102 NRIEVLKNMR-RVCEMNKLNCR----VMGLTWGFLDASIFDLNPN---IILGADVFY 150
E+L N++ + K+ C+ V L+WG F + N IL ADV Y
Sbjct: 121 ---ELLGNLQYNISRNTKMKCKHLPQVKELSWGVALDRNFPRSSNNFDYILAADVVY 174
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 169 | ||||||
| 356495346 | 203 | PREDICTED: methyltransferase-like protei | 0.893 | 0.743 | 0.701 | 7e-59 | |
| 255580627 | 238 | conserved hypothetical protein [Ricinus | 0.881 | 0.626 | 0.706 | 2e-57 | |
| 356540836 | 212 | PREDICTED: methyltransferase-like protei | 0.863 | 0.688 | 0.704 | 8e-57 | |
| 449434120 | 242 | PREDICTED: methyltransferase-like protei | 0.875 | 0.611 | 0.682 | 4e-56 | |
| 449517136 | 242 | PREDICTED: methyltransferase-like protei | 0.875 | 0.611 | 0.675 | 1e-55 | |
| 297836997 | 194 | predicted protein [Arabidopsis lyrata su | 0.804 | 0.701 | 0.759 | 8e-55 | |
| 225431332 | 236 | PREDICTED: methyltransferase-like protei | 0.887 | 0.635 | 0.664 | 1e-54 | |
| 357483907 | 212 | hypothetical protein MTR_5g022860 [Medic | 0.905 | 0.721 | 0.649 | 3e-54 | |
| 42571989 | 196 | Putative methyltransferase family protei | 0.834 | 0.719 | 0.704 | 7e-51 | |
| 30696907 | 159 | Putative methyltransferase family protei | 0.863 | 0.918 | 0.687 | 1e-50 |
| >gi|356495346|ref|XP_003516539.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/154 (70%), Positives = 129/154 (83%), Gaps = 3/154 (1%)
Query: 1 MRDVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAE 60
M D ++ +D +T MTTVSQH+F D+S+ PSFSI+IIENMKE+YGLFVWPCSV+LAE
Sbjct: 1 MEDWNDEQCDDTLT---MTTVSQHFFGDDSETPSFSISIIENMKEDYGLFVWPCSVVLAE 57
Query: 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120
Y+WQ ++RFSGA VVELGAGTSLPGLVAAK+G+ VTLTDDS R+EVL NMRRVC++NKL
Sbjct: 58 YIWQHKHRFSGATVVELGAGTSLPGLVAAKLGARVTLTDDSTRLEVLDNMRRVCDLNKLE 117
Query: 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDASG 154
C V+GLTWG D+SIF L P IILGADV YD+ G
Sbjct: 118 CNVLGLTWGVWDSSIFSLQPTIILGADVLYDSKG 151
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580627|ref|XP_002531136.1| conserved hypothetical protein [Ricinus communis] gi|223529249|gb|EEF31221.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 226 bits (577), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/150 (70%), Positives = 127/150 (84%), Gaps = 1/150 (0%)
Query: 5 GSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ 64
G D DE E + ++M+TVS H F D +KP+FS++ IENMKEEYGLFVWPCSVILAEY+WQ
Sbjct: 3 GKDDDE-EPSHRNMSTVSHHVFGDGLEKPAFSVSTIENMKEEYGLFVWPCSVILAEYIWQ 61
Query: 65 QRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124
QR RFSGA+VVELGAGTSLPGL AAK+GS+VTLTDDSN +EVL N+R+VC +NKL C+V+
Sbjct: 62 QRERFSGADVVELGAGTSLPGLAAAKLGSHVTLTDDSNSLEVLDNIRKVCYLNKLKCKVL 121
Query: 125 GLTWGFLDASIFDLNPNIILGADVFYDASG 154
GLTWG + SIFDL PNIILGADV Y++S
Sbjct: 122 GLTWGIWNISIFDLKPNIILGADVLYESSA 151
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356540836|ref|XP_003538890.1| PREDICTED: methyltransferase-like protein 23-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 105/149 (70%), Positives = 127/149 (85%), Gaps = 3/149 (2%)
Query: 7 DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
D ++D +T MTTVSQH F D+S+ PSF I+IIENMK+EYGLF+WPCSV+LAEYVWQ +
Sbjct: 5 DWNDDSLT---MTTVSQHCFRDDSEAPSFYISIIENMKDEYGLFLWPCSVVLAEYVWQHK 61
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126
+RFSGANVVELGAGTSLP LVAAK+G+ VTLTDDS R+EVL NMRRVC++NKL C V+GL
Sbjct: 62 HRFSGANVVELGAGTSLPDLVAAKLGACVTLTDDSTRLEVLNNMRRVCDLNKLECNVLGL 121
Query: 127 TWGFLDASIFDLNPNIILGADVFYDASGK 155
TWG D+S+F L P IILGADV YD++G+
Sbjct: 122 TWGVWDSSLFSLQPTIILGADVLYDSNGE 150
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449434120|ref|XP_004134844.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 123/148 (83%)
Query: 7 DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
D D D+ D +TT S H F D++ K FSIAIIENM+EEYGL+VWPCS+ILAEYVWQQ+
Sbjct: 10 DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYVWPCSIILAEYVWQQK 69
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126
RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+EVL N+R+VC++N LNC +MGL
Sbjct: 70 ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVLDNIRKVCDLNNLNCNIMGL 129
Query: 127 TWGFLDASIFDLNPNIILGADVFYDASG 154
TWG D SIF+L P II+GADV Y+ S
Sbjct: 130 TWGIWDISIFNLRPTIIIGADVLYENSA 157
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449517136|ref|XP_004165602.1| PREDICTED: methyltransferase-like protein 23-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 100/148 (67%), Positives = 123/148 (83%)
Query: 7 DKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQR 66
D D D+ D +TT S H F D++ K FSIAIIENM+EEYGL++WPCS+ILAEYVWQQ+
Sbjct: 10 DGDPDKPADPSLTTTSHHVFEDDAGKSVFSIAIIENMEEEYGLYMWPCSIILAEYVWQQK 69
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126
RF+GANVVELGAGTSLPGLVAAK+G++VTLTDD+NR+EVL N+R+VC++N LNC +MGL
Sbjct: 70 ARFAGANVVELGAGTSLPGLVAAKLGASVTLTDDANRVEVLDNIRKVCDLNNLNCNIMGL 129
Query: 127 TWGFLDASIFDLNPNIILGADVFYDASG 154
TWG D SIF+L P II+GADV Y+ S
Sbjct: 130 TWGIWDISIFNLRPTIIIGADVLYENSA 157
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297836997|ref|XP_002886380.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297332221|gb|EFH62639.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 104/137 (75%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Query: 19 TTVSQHYFVDESD-KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVEL 77
TT+SQH F + D + S SI++IEN+KEEYGLFVWPCSVILAEYVWQQR RF ++V+EL
Sbjct: 5 TTISQHDFYGDGDSETSISISVIENLKEEYGLFVWPCSVILAEYVWQQRSRFRHSSVLEL 64
Query: 78 GAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137
GAGTSLPGLVAAKVG+NVTLTDD+++ EVL NMRRVCE+NKLNC VMGLTWG DA IFD
Sbjct: 65 GAGTSLPGLVAAKVGANVTLTDDASKPEVLDNMRRVCELNKLNCNVMGLTWGVWDAPIFD 124
Query: 138 LNPNIILGADVFYDASG 154
L PNIILGADV YD+SG
Sbjct: 125 LRPNIILGADVLYDSSG 141
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431332|ref|XP_002277720.1| PREDICTED: methyltransferase-like protein 23 [Vitis vinifera] gi|296084695|emb|CBI25837.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/155 (66%), Positives = 127/155 (81%), Gaps = 5/155 (3%)
Query: 5 GSDKDE----DEMTDKHMTTVSQHYFVDESDK-PSFSIAIIENMKEEYGLFVWPCSVILA 59
GSD+DE +D+HMTT S+H+F + D +FSI IIE+MKE+YGLFVWPCSV+LA
Sbjct: 3 GSDEDEPAGASSQSDQHMTTTSRHHFGNARDSGDAFSITIIESMKEDYGLFVWPCSVVLA 62
Query: 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119
EYVWQQR RF GA+VVELGAGTSLPGLVAAK+GS+VTLTD++ R+EVL NMRRVC++N+L
Sbjct: 63 EYVWQQRSRFLGASVVELGAGTSLPGLVAAKLGSDVTLTDNAVRLEVLDNMRRVCDLNEL 122
Query: 120 NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASG 154
C V+GLTWG DA++F+L P IILGADV YD +
Sbjct: 123 KCEVLGLTWGMWDAAVFNLKPKIILGADVLYDTNA 157
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483907|ref|XP_003612240.1| hypothetical protein MTR_5g022860 [Medicago truncatula] gi|355513575|gb|AES95198.1| hypothetical protein MTR_5g022860 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 126/157 (80%), Gaps = 4/157 (2%)
Query: 3 DVGSDKDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYV 62
D + D D M+T+SQH F D+S+ + +I+IIENM E+YGL+VWP +VIL EY+
Sbjct: 5 DRNEESDSDNTATMTMSTISQHNFNDDSE--TLTISIIENMSEDYGLYVWPSAVILGEYI 62
Query: 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122
WQ+++RFSGANVVELGAGT LPGLVAAKVG+NVTLTDDS R+EVL NMRRVC++NKL C
Sbjct: 63 WQEKHRFSGANVVELGAGTCLPGLVAAKVGANVTLTDDSTRLEVLDNMRRVCDLNKLECN 122
Query: 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASG--KIC 157
V+GLTWG D+SIFDL P IILGADV YD++G +IC
Sbjct: 123 VLGLTWGVWDSSIFDLRPTIILGADVLYDSNGERRIC 159
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42571989|ref|NP_974085.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|332196036|gb|AEE34157.1| Putative methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/142 (70%), Positives = 114/142 (80%), Gaps = 1/142 (0%)
Query: 13 MTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGA 72
M TT+SQH F D + I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF +
Sbjct: 1 MMTTTTTTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDS 59
Query: 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132
+++ELGAGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC V+GLTWG D
Sbjct: 60 SILELGAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVLGLTWGVWD 119
Query: 133 ASIFDLNPNIILGADVFYDASG 154
A I DL PNIILGADV YD+SG
Sbjct: 120 APILDLRPNIILGADVLYDSSG 141
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696907|ref|NP_850970.1| Putative methyltransferase family protein [Arabidopsis thaliana] gi|26452591|dbj|BAC43379.1| unknown protein [Arabidopsis thaliana] gi|117958334|gb|ABK59663.1| At1g63855 [Arabidopsis thaliana] gi|332196037|gb|AEE34158.1| Putative methyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/147 (68%), Positives = 115/147 (78%), Gaps = 1/147 (0%)
Query: 13 MTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGA 72
M TT+SQH F D + I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF +
Sbjct: 1 MMTTTTTTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDS 59
Query: 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132
+++ELGAGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC V+GLTWG D
Sbjct: 60 SILELGAGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVLGLTWGVWD 119
Query: 133 ASIFDLNPNIILGADVFYDASGKICAF 159
A I DL PNIILGADV YD+SG F
Sbjct: 120 APILDLRPNIILGADVLYDSSGSFHLF 146
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 169 | ||||||
| TAIR|locus:504956172 | 196 | AT1G63855 "AT1G63855" [Arabido | 0.798 | 0.688 | 0.727 | 4.6e-50 | |
| MGI|MGI:1921569 | 253 | Mettl23 "methyltransferase lik | 0.810 | 0.541 | 0.384 | 8.7e-24 | |
| RGD|1306284 | 225 | Mettl23 "methyltransferase lik | 0.792 | 0.595 | 0.371 | 1e-22 | |
| UNIPROTKB|Q86XA0 | 190 | METTL23 "Methyltransferase-lik | 0.680 | 0.605 | 0.404 | 2.4e-21 | |
| ZFIN|ZDB-GENE-060825-19 | 223 | mettl21d "methyltransferase li | 0.745 | 0.565 | 0.328 | 5.6e-13 | |
| UNIPROTKB|Q96AZ1 | 226 | METTL21B "Protein-lysine methy | 0.863 | 0.646 | 0.316 | 1.9e-12 | |
| UNIPROTKB|I3LNJ7 | 226 | METTL21B "Uncharacterized prot | 0.733 | 0.548 | 0.323 | 6.4e-12 | |
| UNIPROTKB|A4FV98 | 226 | METTL21B "Protein-lysine methy | 0.656 | 0.491 | 0.333 | 2.8e-11 | |
| ZFIN|ZDB-GENE-050320-145 | 218 | mettl21a "methyltransferase li | 0.568 | 0.440 | 0.377 | 3.5e-11 | |
| ZFIN|ZDB-GENE-081022-70 | 403 | zgc:194177 "zgc:194177" [Danio | 0.680 | 0.285 | 0.322 | 5.7e-11 |
| TAIR|locus:504956172 AT1G63855 "AT1G63855" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 99/136 (72%), Positives = 113/136 (83%)
Query: 19 TTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELG 78
TT+SQH F D + I+IIEN+KEEYGLFVWPCSVILAEYVWQ R RF ++++ELG
Sbjct: 7 TTISQHNFYGAGDSET-CISIIENLKEEYGLFVWPCSVILAEYVWQHRSRFRDSSILELG 65
Query: 79 AGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138
AGTSLPGLVAAKVG+NVTLTDD+ + EVL NMRRVCE+NKLNC V+GLTWG DA I DL
Sbjct: 66 AGTSLPGLVAAKVGANVTLTDDATKPEVLDNMRRVCELNKLNCNVLGLTWGVWDAPILDL 125
Query: 139 NPNIILGADVFYDASG 154
PNIILGADV YD+SG
Sbjct: 126 RPNIILGADVLYDSSG 141
|
|
| MGI|MGI:1921569 Mettl23 "methyltransferase like 23" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 55/143 (38%), Positives = 87/143 (60%)
Query: 27 VDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGL 86
V ++ + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG+
Sbjct: 42 VPGGNRAVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRSLPGKAVLEVGAGVSLPGI 101
Query: 87 VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIIL 144
+AAK G+ V L+D S L R+ C+MN L V+GLTWG + I L P +IIL
Sbjct: 102 LAAKCGAKVILSDSSEFPHCLDICRQSCQMNNLPQVEVVGLTWGHISKDILSLPPQDIIL 161
Query: 145 GADVFYDASGKICAFEILICSLF 167
G+DVF++ FE ++ +++
Sbjct: 162 GSDVFFEPED----FESILATVY 180
|
|
| RGD|1306284 Mettl23 "methyltransferase like 23" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 52/140 (37%), Positives = 85/140 (60%)
Query: 30 SDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA 89
+D + + + + +YG++VWPC+V+LA+Y+W R G V+E+GAG SLPG++AA
Sbjct: 17 ADPTVLEVRVPQVLHVQYGMYVWPCAVVLAQYLWFHRRVLPGKAVLEIGAGVSLPGILAA 76
Query: 90 KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGAD 147
K G+ VTL+D L + C+MN L +++GLTWG + L P +IILG+D
Sbjct: 77 KCGAKVTLSDSPELPHCLDICWQSCQMNNLPQVQIVGLTWGHISKDTLSLPPQDIILGSD 136
Query: 148 VFYDASGKICAFEILICSLF 167
VF++ FE ++ +++
Sbjct: 137 VFFEPED----FESILATVY 152
|
|
| UNIPROTKB|Q86XA0 METTL23 "Methyltransferase-like protein 23" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 49/121 (40%), Positives = 79/121 (65%)
Query: 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK 108
++VWPC+V+LA+Y+W R G ++E+GAG SLPG++AAK G+ V L+D S L+
Sbjct: 1 MYVWPCAVVLAQYLWFHRRSLPGKAILEIGAGVSLPGILAAKCGAEVILSDSSELPHCLE 60
Query: 109 NMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNP-NIILGADVFYDASGKICAFEILICSL 166
R+ C+MN L + +V+GLTWG + + L P +IIL +DVF++ FE ++ ++
Sbjct: 61 VCRQSCQMNNLPHLQVVGLTWGHISWDLLALPPQDIILASDVFFEPED----FEDILATI 116
Query: 167 F 167
+
Sbjct: 117 Y 117
|
|
| ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 49/149 (32%), Positives = 84/149 (56%)
Query: 22 SQHYFVDESDKPSFSIA-IIENMKEEYGLFVWPCSVILAEYVWQQRY--------RFSGA 72
S+ YFV E +K S+ + + K + G VW +++L++Y+ +++ +S
Sbjct: 7 SEDYFVREIEKNDGSVLRMYQCSKGDVGCVVWDAAIVLSKYLETEQFCSIGSGVSMWSSK 66
Query: 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSN-----RIEVLKNMRRVCEMNKLNCRVMGLT 127
N++ELGAGT L GLVAA +G+NVTLTD + ++ + KN + + + +V L
Sbjct: 67 NIIELGAGTGLVGLVAASLGANVTLTDLEDLQPLLQLNIKKNQQLI-HTGSVTAKV--LK 123
Query: 128 WGFLDASIFDL--NPNIILGAD-VFYDAS 153
WG A++ D +P+ IL AD ++Y+ S
Sbjct: 124 WG---ANVDDFLPHPHYILMADCIYYEQS 149
|
|
| UNIPROTKB|Q96AZ1 METTL21B "Protein-lysine methyltransferase METTL21B" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
Identities = 50/158 (31%), Positives = 74/158 (46%)
Query: 1 MRDVGSDKDEDEMTDKHMTTVSQHYFVDE-SDKPSFS-----IAIIENMKEEYGLF--VW 52
M D G D E E V F D S+K F + I +N G+ VW
Sbjct: 1 MADPGPDP-ESESESVFPREVG--LFADSYSEKSQFCFCGHVLTITQNFGSRLGVAARVW 57
Query: 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112
++ L Y Q F G V+ELGAGT + G++AA G +VT+TD +E ++ +
Sbjct: 58 DAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGDVTITDLPLALEQIQGNVQ 117
Query: 113 VCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150
+V L+WG +D +F N +++LGAD+ Y
Sbjct: 118 ANVPAGGQAQVRALSWG-IDHHVFPANYDLVLGADIVY 154
|
|
| UNIPROTKB|I3LNJ7 METTL21B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 43/133 (32%), Positives = 68/133 (51%)
Query: 26 FVDE-SDKPSF-----SIAIIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVEL 77
F D S+K F ++I EN G+ VW ++ L Y Q F G V+EL
Sbjct: 23 FADSYSEKSRFCFCGHELSITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIEL 82
Query: 78 GAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137
GAGT + G++AA G +VT+TD +E ++ + +V L+WG +D +F
Sbjct: 83 GAGTGIVGILAALQGGDVTITDLPLVLEQIQGNVQANVPTGGRAQVRALSWG-IDQHVFP 141
Query: 138 LNPNIILGADVFY 150
+ +++LGAD+ Y
Sbjct: 142 GDYDLVLGADIVY 154
|
|
| UNIPROTKB|A4FV98 METTL21B "Protein-lysine methyltransferase METTL21B" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/114 (33%), Positives = 60/114 (52%)
Query: 39 IIENMKEEYGLF--VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96
I EN G+ VW ++ L Y Q F G V+ELGAGT + G++AA G +VT
Sbjct: 42 ITENFGSRLGVAARVWDAALSLCNYFESQNVDFRGKKVIELGAGTGIVGILAALQGGDVT 101
Query: 97 LTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150
+TD +E ++ + +V L+WG +D +F + +++LGAD+ Y
Sbjct: 102 ITDLPLVLEQIQGNVQANVPPGGRAQVRALSWG-IDQHVFPGDYDLVLGADIVY 154
|
|
| ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 40/106 (37%), Positives = 57/106 (53%)
Query: 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-N 109
VW +V+L ++ + G V+ELGAGT L G+VAA +G+NVT+TD +E L N
Sbjct: 46 VWDAAVVLCMFLEMGKVDLKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTAN 105
Query: 110 MRRVCEMNKLNC-RVMGLTWGFLDASIFDLNP----NIILGADVFY 150
+ + +V LTWG DL P ++ILGAD+ Y
Sbjct: 106 VHENIPQGRQKAVQVSELTWG----ENLDLYPQGGYDLILGADIVY 147
|
|
| ZFIN|ZDB-GENE-081022-70 zgc:194177 "zgc:194177" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 40/124 (32%), Positives = 61/124 (49%)
Query: 2 RDVGSDKDED---EMTDKHMTTVSQHYFVDESDKPSFSIAIIENMK----EEYGLFVWPC 54
RD SD+D ++ T+ Q DE ++ + I IIE+ E+ G +W
Sbjct: 129 RDTTSDRDAVCPIILSQSAATSSDQDEDSDEEEESARDIIIIEHTMATPLEDVGKQIWRG 188
Query: 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114
+ +LA+++ Q F GA V+ELGAGT L +V A V V TD ++L +R
Sbjct: 189 AFLLADFILAQSSMFKGATVLELGAGTGLTSIVMAMVAKTVYCTDVGE--DLLNMCQRNV 246
Query: 115 EMNK 118
+NK
Sbjct: 247 TVNK 250
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | Al_scaffold_0002_106 | annotation not avaliable (194 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 169 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 2e-17 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 4e-04 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-17
Identities = 46/149 (30%), Positives = 68/149 (45%), Gaps = 25/149 (16%)
Query: 32 KPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQ----QRYRFSGANVVELGAGTSLPGLV 87
S + I E+ G VW +V+L++Y+ SG NV+ELG+GT L G+
Sbjct: 2 LDSPELKIEEDTGNGIGGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVGIA 61
Query: 88 AAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWG------FLDASIFD 137
A + G++VT+TD IE M++ E+N L+ L WG D D
Sbjct: 62 VALLLPGASVTITDLEEAIE---LMKKNIELNGLSSKVTAKVLDWGEDLPDDVFDPHPVD 118
Query: 138 LNPNIILGADVFYDASGKICAFEILICSL 166
L IL AD Y+ +F +L +L
Sbjct: 119 L----ILAADCVYNED----SFPLLEKTL 139
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Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 4e-04
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTD-DSNRI 104
+ F W +LA Y+ G V++LGAG+ L + AA+ G+ V D D
Sbjct: 56 FWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLE 115
Query: 105 EVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151
+ +R N ++ + FDL +L D+FY+
Sbjct: 116 Q---AIRLNAAANGVSILFTHADLIGSPPA-FDL----LLAGDLFYN 154
|
Length = 218 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 169 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.96 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.75 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.72 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.71 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.71 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.68 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.66 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.64 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.64 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.61 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.61 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.6 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.59 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.59 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.57 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.57 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.57 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.56 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.56 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.53 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.51 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.51 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.51 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.51 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.5 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.5 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.48 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.48 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.48 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.48 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.48 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.48 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.47 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.47 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.47 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.46 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.46 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.46 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.45 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.45 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.44 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.43 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.42 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.42 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.41 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.4 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.4 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.39 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.39 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.39 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.39 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.38 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.38 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.38 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.38 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.38 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.37 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.36 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.36 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.35 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.35 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.35 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.35 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.34 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.34 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.32 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.32 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.32 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.32 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.31 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.31 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.3 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.3 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.3 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.3 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.29 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.29 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.28 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.28 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.28 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.28 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.28 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.27 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.27 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.27 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.26 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.25 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.23 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.23 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.22 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.2 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.19 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.18 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.18 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.16 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.16 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.15 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.15 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.14 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.14 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.13 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.13 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.12 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.11 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.1 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 99.1 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.1 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.09 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.09 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.09 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.08 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.07 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.06 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.03 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.03 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.02 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.02 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.01 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.01 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.0 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.99 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.98 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.98 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.98 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.97 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.95 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.95 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.94 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.94 | |
| PLN02476 | 278 | O-methyltransferase | 98.94 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.94 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.93 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.89 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.89 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.88 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.87 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.87 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.87 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.86 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.86 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.85 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.84 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.84 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.84 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.84 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.83 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.82 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.8 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.78 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.78 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.78 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.75 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.74 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.69 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.68 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.68 | |
| PLN02366 | 308 | spermidine synthase | 98.67 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.66 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.66 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.65 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.65 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.63 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.62 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.57 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.56 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.55 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.55 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.53 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.52 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.52 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.51 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.48 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.48 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.44 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 98.41 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.4 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.4 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.35 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.35 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.33 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.32 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.32 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.23 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.2 | |
| PLN02823 | 336 | spermine synthase | 98.18 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.16 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.14 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.12 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.09 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 98.06 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.05 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.05 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.04 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.04 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.03 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.03 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.01 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.97 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.96 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.95 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 97.94 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.93 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.92 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.89 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 97.88 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.86 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.85 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 97.84 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 97.84 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.81 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.8 | |
| PHA01634 | 156 | hypothetical protein | 97.78 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 97.76 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.73 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.72 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.69 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.63 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.63 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.51 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.47 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.37 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.33 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.32 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 97.22 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 97.18 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.11 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.09 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.06 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 96.98 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.95 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 96.94 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.91 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.82 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.8 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 96.79 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.77 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.77 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.72 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.7 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.52 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.45 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.25 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.06 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 96.05 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 95.98 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.93 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 95.79 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 95.78 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.73 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.72 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 95.61 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.59 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.56 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.54 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 95.48 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.8 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.79 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 94.64 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.63 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 94.51 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 94.46 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 94.29 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 94.27 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.17 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.98 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 93.96 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 93.92 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 93.61 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 93.42 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 93.41 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 92.89 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 92.63 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 92.33 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 92.27 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 91.77 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 91.69 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 91.56 | |
| COG3392 | 330 | Adenine-specific DNA methylase [DNA replication, r | 91.25 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 91.16 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 91.09 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 90.86 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 90.75 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 90.51 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 90.34 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 90.31 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 89.94 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 89.01 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 88.64 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 88.17 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.08 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 87.77 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 87.52 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 87.09 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 86.56 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 86.27 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 86.25 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 86.22 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 85.68 | |
| PRK09590 | 104 | celB cellobiose phosphotransferase system IIB comp | 85.48 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 85.46 | |
| KOG2017 | 427 | consensus Molybdopterin synthase sulfurylase [Coen | 84.35 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 84.33 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 84.29 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 83.94 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 83.65 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 83.17 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 83.04 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 82.52 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 81.76 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 81.74 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 81.49 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 81.41 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 81.19 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 81.09 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 80.8 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 80.69 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 80.61 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 80.54 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 80.45 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 80.08 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 80.05 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 80.02 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-29 Score=186.67 Aligned_cols=133 Identities=35% Similarity=0.479 Sum_probs=86.8
Q ss_pred ceEEEEeccccCCcceeecchHHHHHHHHHhc------cCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHH
Q 030935 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQ------RYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIE 105 (169)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~------~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~ 105 (169)
..+++|.|....++|.++||++.+|++|+.++ ...+++++|||||||+|++|+.+++. +++|++||+++
T Consensus 3 ~~~l~i~e~~~~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~--- 79 (173)
T PF10294_consen 3 NKTLQIEEDWGDGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE--- 79 (173)
T ss_dssp --------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S----
T ss_pred ccccccccccccCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch---
Confidence 34577888888899999999999999999984 56778999999999999999999998 45999999983
Q ss_pred HHHHHHHHHHHhC----CcceEEEEEcCCCC-c-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 106 VLKNMRRVCEMNK----LNCRVMGLTWGFLD-A-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 106 ~l~~~~~n~~~n~----~~~~~~~l~~~~~~-~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+++++.|++.|+ .++.+..++|++.. . ...+.+||+|+++||+|+...+++|++++.++|+|.
T Consensus 80 ~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~ 149 (173)
T PF10294_consen 80 VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPN 149 (173)
T ss_dssp HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-
T ss_pred hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCC
Confidence 9999999999987 45778899999743 1 122358999999999999999999999999999874
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-18 Score=129.16 Aligned_cols=113 Identities=20% Similarity=0.258 Sum_probs=98.9
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
+.++++.|-+++.||+|+..+++..+|++|||+|+|+|++++.+++.|+ .|+++|+. |..+.+++.|++.|+..+.+
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~--P~~~~ai~lNa~angv~i~~ 131 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADID--PWLEQAIRLNAAANGVSILF 131 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCC--hHHHHHhhcchhhccceeEE
Confidence 4589999999999999999999999999999999999999999999998 79999999 56999999999999987765
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
...+... .+..||+|+++|++|+.+....+++++.+
T Consensus 132 ~~~d~~g-----~~~~~Dl~LagDlfy~~~~a~~l~~~~~~ 167 (218)
T COG3897 132 THADLIG-----SPPAFDLLLAGDLFYNHTEADRLIPWKDR 167 (218)
T ss_pred eeccccC-----CCcceeEEEeeceecCchHHHHHHHHHHH
Confidence 5443321 34589999999999999999988884443
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-17 Score=128.52 Aligned_cols=145 Identities=17% Similarity=0.146 Sum_probs=106.0
Q ss_pred CCCcceEEEEEeccCCC-----C-CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHH
Q 030935 15 DKHMTTVSQHYFVDESD-----K-PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA 88 (169)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-----~-~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~ 88 (169)
-..|..+.+.++..+.- . ..+.|++.+.+..++|+ .|.+..-.+++.+.. .++++|||+|||||++++++
T Consensus 105 ~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~--HpTT~lcL~~Le~~~--~~g~~vlDvGcGSGILaIAa 180 (300)
T COG2264 105 YFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGT--HPTTSLCLEALEKLL--KKGKTVLDVGCGSGILAIAA 180 (300)
T ss_pred cCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCC--ChhHHHHHHHHHHhh--cCCCEEEEecCChhHHHHHH
Confidence 34577777766644321 1 46778888888888887 467777677776653 38899999999999999999
Q ss_pred HHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 89 AKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 89 a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
+++|+ +|+++|+++ -+++.+++|+.+|++.... ...+..........+||+|+|+ ++ ...+..+..-+...|+
T Consensus 181 ~kLGA~~v~g~DiDp--~AV~aa~eNa~~N~v~~~~-~~~~~~~~~~~~~~~~DvIVAN-IL--A~vl~~La~~~~~~lk 254 (300)
T COG2264 181 AKLGAKKVVGVDIDP--QAVEAARENARLNGVELLV-QAKGFLLLEVPENGPFDVIVAN-IL--AEVLVELAPDIKRLLK 254 (300)
T ss_pred HHcCCceEEEecCCH--HHHHHHHHHHHHcCCchhh-hcccccchhhcccCcccEEEeh-hh--HHHHHHHHHHHHHHcC
Confidence 99999 699999995 5999999999999987421 2333333333333599999985 32 3345577788888888
Q ss_pred CC
Q 030935 168 PI 169 (169)
Q Consensus 168 p~ 169 (169)
|+
T Consensus 255 pg 256 (300)
T COG2264 255 PG 256 (300)
T ss_pred CC
Confidence 75
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=118.46 Aligned_cols=109 Identities=23% Similarity=0.216 Sum_probs=87.3
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+++..|++++... ++++|||+|||+|.+|+.+++.+. +|+++|++ +.+++.+++|++.|++.. ..+.+.+
T Consensus 18 ~~t~lL~~~l~~~----~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~--~~a~~~a~~n~~~n~~~~--v~~~~~d 89 (170)
T PF05175_consen 18 AGTRLLLDNLPKH----KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDIN--PDALELAKRNAERNGLEN--VEVVQSD 89 (170)
T ss_dssp HHHHHHHHHHHHH----TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESB--HHHHHHHHHHHHHTTCTT--EEEEESS
T ss_pred HHHHHHHHHHhhc----cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHHhcCccc--ccccccc
Confidence 4788888888766 567999999999999999999876 59999999 569999999999999884 2345666
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
......+.+||+|+++.+++.-.. ...+++...+.|+|+
T Consensus 90 ~~~~~~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~ 133 (170)
T PF05175_consen 90 LFEALPDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPG 133 (170)
T ss_dssp TTTTCCTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEE
T ss_pred ccccccccceeEEEEccchhcccccchhhHHHHHHHHHHhccCC
Confidence 655555679999999999776654 678888888999874
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-18 Score=125.16 Aligned_cols=121 Identities=25% Similarity=0.379 Sum_probs=98.2
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc--
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-- 120 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-- 120 (169)
++..++||+...|+.++++++..++|++|||||.| ||+.|+++|.... .|..||-++ +.+++.++-...|..+
T Consensus 5 tgnvciwpseeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne--~svrnv~ki~~~n~~s~~ 82 (201)
T KOG3201|consen 5 TGNVCIWPSEEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNE--ESVRNVEKIRNSNMASSL 82 (201)
T ss_pred CCcEEecccHHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCH--HHHHHHHHHHhccccccc
Confidence 34579999999999999999999999999999999 9999999998754 799999994 5899998877777332
Q ss_pred ceEEEEEcCCCC--cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 121 CRVMGLTWGFLD--ASIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 121 ~~~~~l~~~~~~--~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.++..+.|.... .......||+|+|+||+|..+..++|+++|+..|+|
T Consensus 83 tsc~vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p 132 (201)
T KOG3201|consen 83 TSCCVLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRP 132 (201)
T ss_pred ceehhhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCc
Confidence 122234443221 122335999999999999999999999999999998
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-17 Score=127.20 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=82.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++|++|||+|||.|+++..+|+.|++|+++|+++ ++++.++.....+++.+......-.+... ...+||+|+|.++
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se--~~I~~Ak~ha~e~gv~i~y~~~~~edl~~--~~~~FDvV~cmEV 133 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASE--KPIEVAKLHALESGVNIDYRQATVEDLAS--AGGQFDVVTCMEV 133 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCCh--HHHHHHHHhhhhccccccchhhhHHHHHh--cCCCccEEEEhhH
Confidence 6899999999999999999999999999999995 59999999999998875433222222211 1269999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.|.++.+.+++.+.+.+||+
T Consensus 134 lEHv~dp~~~~~~c~~lvkP~ 154 (243)
T COG2227 134 LEHVPDPESFLRACAKLVKPG 154 (243)
T ss_pred HHccCCHHHHHHHHHHHcCCC
Confidence 999999999999999999996
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.6e-16 Score=121.30 Aligned_cols=129 Identities=29% Similarity=0.441 Sum_probs=99.3
Q ss_pred EEEeccccCCcceeecchHHHHHHHHHhccC------CCC-----CCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRY------RFS-----GANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRI 104 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~------~~~-----~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~ 104 (169)
+.+.......+.+.+|+++-.+++++..... ... .++|||||+|||++|+.+|+ .++.|+.+|..+
T Consensus 42 ~~~~~~~~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-- 119 (248)
T KOG2793|consen 42 TVIESGLEQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPK-- 119 (248)
T ss_pred eecccccccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchh--
Confidence 4444445667899999999999999987543 222 34699999999999999998 567999999975
Q ss_pred HHHHHHHHHHHHh-----C--CcceEEEEEcCCCCcCC-CCCC-CcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 105 EVLKNMRRVCEMN-----K--LNCRVMGLTWGFLDASI-FDLN-PNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 105 ~~l~~~~~n~~~n-----~--~~~~~~~l~~~~~~~~~-~~~~-fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.+.+.+.|...| + .++.+..+.|++..... .... ||+|+++||+|.+..++.+..+++..|..
T Consensus 120 -~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~ 191 (248)
T KOG2793|consen 120 -VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAK 191 (248)
T ss_pred -hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhc
Confidence 555555554333 2 26778899999864422 2224 89999999999999999999999988754
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=122.80 Aligned_cols=123 Identities=18% Similarity=0.232 Sum_probs=90.0
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
....|.|.+.+..+||. .|.+....++|.+. ..++++|||+|||||+++++++++|+ +|+++|+++ .+++.++
T Consensus 128 ~~~~I~idPg~AFGTG~--H~TT~lcl~~l~~~--~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp--~Av~~a~ 201 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGH--HPTTRLCLELLEKY--VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP--LAVEAAR 201 (295)
T ss_dssp TSEEEEESTTSSS-SSH--CHHHHHHHHHHHHH--SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC--HHHHHHH
T ss_pred CcEEEEECCCCcccCCC--CHHHHHHHHHHHHh--ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH--HHHHHHH
Confidence 46678888888888887 46888888888876 34788999999999999999999999 799999996 4999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
+|++.|++..++... . .......+||+|+|+ ++. ..+..++..+.+.|+|
T Consensus 202 ~N~~~N~~~~~~~v~---~-~~~~~~~~~dlvvAN-I~~--~vL~~l~~~~~~~l~~ 251 (295)
T PF06325_consen 202 ENAELNGVEDRIEVS---L-SEDLVEGKFDLVVAN-ILA--DVLLELAPDIASLLKP 251 (295)
T ss_dssp HHHHHTT-TTCEEES---C-TSCTCCS-EEEEEEE-S-H--HHHHHHHHHCHHHEEE
T ss_pred HHHHHcCCCeeEEEE---E-ecccccccCCEEEEC-CCH--HHHHHHHHHHHHhhCC
Confidence 999999998765432 1 122234799999974 332 2234455556666665
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-16 Score=121.74 Aligned_cols=100 Identities=17% Similarity=0.177 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.+.|++|||+|||+|+++..+|+.|+.|+++|.+ ++|++.|++....+-.... ...+...+...+-...+||.|+|
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArlga~V~GID~s--~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc 164 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARLGAQVTGIDAS--DDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC 164 (282)
T ss_pred ccCCceEEEeccCccccchhhHhhCCeeEeeccc--HHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence 3457889999999999999999999999999999 5699999987443322111 11122222111222347999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++.|..+++.++..+.+.|+|+
T Consensus 165 sevleHV~dp~~~l~~l~~~lkP~ 188 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLKPN 188 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhCCC
Confidence 999999999999999999999996
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=104.59 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-CcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-DASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-~~~~~~~~fDlIi~s 146 (169)
++.+|||||||+|..++.+++ .+++|+++|++ +++++.+++++...+...++. +..++. .......+||+|++.
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~D~v~~~ 77 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDIS--PEMLEIARERAAEEGLSDRIT-FVQGDAEFDPDFLEPFDLVICS 77 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESS--HHHHHHHHHHHHHTTTTTTEE-EEESCCHGGTTTSSCEEEEEEC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCCCeE-EEECccccCcccCCCCCEEEEC
Confidence 578999999999999999999 67899999999 679999999996666554443 333444 223344589999999
Q ss_pred C-cCCCC---CChHHHHHHHHHhccCC
Q 030935 147 D-VFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d-~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
. ..++. .....+++.+.+.|+|+
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~L~pg 104 (112)
T PF12847_consen 78 GFTLHFLLPLDERRRVLERIRRLLKPG 104 (112)
T ss_dssp SGSGGGCCHHHHHHHHHHHHHHHEEEE
T ss_pred CCccccccchhHHHHHHHHHHHhcCCC
Confidence 8 33222 45677899999999985
|
... |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.1e-15 Score=112.03 Aligned_cols=97 Identities=13% Similarity=0.113 Sum_probs=78.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++.+|||+|||+|..++.++++|.+|+++|++ +.+++.++++++.++++++....+... ...+.+||+|+++.
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s--~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~I~~~~ 102 (195)
T TIGR00477 28 TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHN--PASIASVLDMKARENLPLRTDAYDINA---AALNEDYDFIFSTV 102 (195)
T ss_pred cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHHhCCCceeEeccchh---ccccCCCCEEEEec
Confidence 3456799999999999999999999999999999 569999999988888765443333221 12245899999999
Q ss_pred cCCCC--CChHHHHHHHHHhccCC
Q 030935 148 VFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
++++. ...+.+++.+.++|+|+
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~Lkpg 126 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTRPG 126 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhCCC
Confidence 98865 46789999999999996
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.3e-15 Score=111.47 Aligned_cols=97 Identities=19% Similarity=0.141 Sum_probs=78.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++.+|||+|||+|..++.+++.|.+|+++|++ +.+++.+++++..+++. +++...++.+ ...+.+||+|+++
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S--~~~i~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~I~~~ 102 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKN--PMSIANLERIKAAENLDNLHTAVVDLNN---LTFDGEYDFILST 102 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHcCCCcceEEecChhh---CCcCCCcCEEEEe
Confidence 3466899999999999999999999999999999 56999999998887764 3333333322 2234579999999
Q ss_pred CcCCCCC--ChHHHHHHHHHhccCC
Q 030935 147 DVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.++|+.. ..+.+++.+.++|+|+
T Consensus 103 ~~~~~~~~~~~~~~l~~i~~~Lkpg 127 (197)
T PRK11207 103 VVLMFLEAKTIPGLIANMQRCTKPG 127 (197)
T ss_pred cchhhCCHHHHHHHHHHHHHHcCCC
Confidence 9988653 6789999999999996
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-15 Score=114.21 Aligned_cols=124 Identities=16% Similarity=0.167 Sum_probs=94.5
Q ss_pred EEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~ 114 (169)
+.|.|.. .|++.--++.+|+.|..-. ..++|||||||+|++|+++|++ . ++|+++|++ +++.+.|++|+
T Consensus 18 ~~I~q~~---~~~~~~~DaiLL~~~~~~~----~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq--~~~a~~A~~nv 88 (248)
T COG4123 18 FFIIQDR---CGFRYGTDAILLAAFAPVP----KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ--EEAAEMAQRNV 88 (248)
T ss_pred eEEEeCC---CccccccHHHHHHhhcccc----cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC--HHHHHHHHHHH
Confidence 4555554 7788888999999998532 3679999999999999999987 4 599999999 57999999999
Q ss_pred HHhCCcceEE--EEEcCCCCcCCCCCCCcEEEEcCcCCCCCC------------------hHHHHHHHHHhccCC
Q 030935 115 EMNKLNCRVM--GLTWGFLDASIFDLNPNIILGADVFYDASG------------------KICAFEILICSLFPI 169 (169)
Q Consensus 115 ~~n~~~~~~~--~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~------------------~~~l~~~l~~~L~p~ 169 (169)
+.|++.-++. ..+..++.......+||+|+|+.+.|.... ++++++.....|||+
T Consensus 89 ~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~ 163 (248)
T COG4123 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPG 163 (248)
T ss_pred HhCcchhceeEehhhHHHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCC
Confidence 9998875543 333222222222337999999999995532 677888888888875
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-15 Score=120.84 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEEEcC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILGAD 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi~sd 147 (169)
.++.+|||+|||+|.++..+++.|++|+++|.+ +++++.++.+...++....+. +..++... ...+.+||+|++.+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s--~~~i~~Ar~~~~~~~~~~~i~-~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAV--DKNVKIARLHADMDPVTSTIE-YLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcCccccee-EEecCHHHhhhccCCCCEEEEhh
Confidence 467799999999999999999999999999999 569999998876654422221 33333222 22345899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++|..+.+.+++.+.+.|+|+
T Consensus 207 vLeHv~d~~~~L~~l~r~LkPG 228 (322)
T PLN02396 207 VIEHVANPAEFCKSLSALTIPN 228 (322)
T ss_pred HHHhcCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999996
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.8e-15 Score=106.91 Aligned_cols=97 Identities=20% Similarity=0.196 Sum_probs=78.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH-h--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|.++..+++ . +++++++|++ ++|++.++.+++.++.+ +++...++.+.... .+.+||+|++
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s--~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~~~~D~I~~ 79 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDIS--EEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LEEKFDIIIS 79 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESS--HHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SSTTEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECc--HHHHHHhhcccccccccccceEEeehhccccc-cCCCeeEEEE
Confidence 567999999999999999994 3 5699999999 57999999999988886 45444444442211 2269999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.++|+..+...+++.+.+.|+|+
T Consensus 80 ~~~l~~~~~~~~~l~~~~~~lk~~ 103 (152)
T PF13847_consen 80 NGVLHHFPDPEKVLKNIIRLLKPG 103 (152)
T ss_dssp ESTGGGTSHHHHHHHHHHHHEEEE
T ss_pred cCchhhccCHHHHHHHHHHHcCCC
Confidence 999999999999999999999874
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=116.08 Aligned_cols=111 Identities=14% Similarity=-0.013 Sum_probs=85.5
Q ss_pred HHHHHHHHhccCC-----CCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 56 VILAEYVWQQRYR-----FSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 56 ~~La~~l~~~~~~-----~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
..+.+.+.+.... .++.+|||+|||+|..+..+++. +++|+++|++ +.+++.++++++.++...++. +..+
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s--~~~i~~a~~~~~~~g~~~~v~-~~~~ 175 (340)
T PLN02244 99 IRMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLS--PVQAARANALAAAQGLSDKVS-FQVA 175 (340)
T ss_pred HHHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEEc
Confidence 3444445544332 46789999999999999999885 7899999999 569999999998887643322 2223
Q ss_pred CCC-cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLD-ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~-~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.. .++.+.+||+|++..++++..+...+++.+.+.|+||
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG 216 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPG 216 (340)
T ss_pred CcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCC
Confidence 322 2344569999999999999999999999999999996
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=113.02 Aligned_cols=126 Identities=17% Similarity=0.222 Sum_probs=93.2
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
....+.+.+.+..++|.+ |.+....+++.+.. .++++|||+|||+|++++.+++.|+ +|+++|++ +.+++.++
T Consensus 126 ~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~~--~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid--~~al~~a~ 199 (288)
T TIGR00406 126 DALIIMLDPGLAFGTGTH--PTTSLCLEWLEDLD--LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDID--PLAVESAR 199 (288)
T ss_pred CcEEEEECCCCcccCCCC--HHHHHHHHHHHhhc--CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECC--HHHHHHHH
Confidence 345677777776667654 77776666665543 3678999999999999999999887 89999999 56999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|+..|++...+... .++. ....+.+||+|+++-+ ...+..+++.+.+.|+|+
T Consensus 200 ~n~~~n~~~~~~~~~-~~~~-~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~Lkpg 252 (288)
T TIGR00406 200 KNAELNQVSDRLQVK-LIYL-EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPG 252 (288)
T ss_pred HHHHHcCCCcceEEE-eccc-ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCC
Confidence 999999876443322 2222 1223458999998633 234567889999999986
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.6e-14 Score=113.03 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=90.6
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
-|...|..--.-++.+.++.+...+.+|||||||.|.+|+.+++... +++++|.+ ..+++.+|+|++.|+++..
T Consensus 135 pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn--~~Av~~ar~Nl~~N~~~~~-- 210 (300)
T COG2813 135 PGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN--ARAVESARKNLAANGVENT-- 210 (300)
T ss_pred CCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecC--HHHHHHHHHhHHHcCCCcc--
Confidence 35566665555556666665555556999999999999999999874 89999999 5699999999999998763
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh-----HHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASGK-----ICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~-----~~l~~~l~~~L~p~ 169 (169)
...+++..+...+ +||+|||+.+++.-... ..+++.-.+.|++|
T Consensus 211 ~v~~s~~~~~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~g 259 (300)
T COG2813 211 EVWASNLYEPVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPG 259 (300)
T ss_pred EEEEecccccccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccC
Confidence 2444555555555 99999999999955443 36888888888875
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.1e-14 Score=112.07 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=78.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||+|||+|..++.+++.|.+|+++|++ +.+++.++++++.+++++++...+.. ....+.+||+|+++.+
T Consensus 119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s--~~ai~~~~~~~~~~~l~v~~~~~D~~---~~~~~~~fD~I~~~~v 193 (287)
T PRK12335 119 VKPGKALDLGCGQGRNSLYLALLGFDVTAVDIN--QQSLENLQEIAEKENLNIRTGLYDIN---SASIQEEYDFILSTVV 193 (287)
T ss_pred cCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEechh---cccccCCccEEEEcch
Confidence 345699999999999999999999999999999 56999999999888886554433322 2223568999999999
Q ss_pred CCCC--CChHHHHHHHHHhccCC
Q 030935 149 FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. +..+.+++.+.+.|+|+
T Consensus 194 l~~l~~~~~~~~l~~~~~~Lkpg 216 (287)
T PRK12335 194 LMFLNRERIPAIIKNMQEHTNPG 216 (287)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCC
Confidence 8865 46788999999999996
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.1e-14 Score=117.82 Aligned_cols=120 Identities=18% Similarity=0.101 Sum_probs=84.5
Q ss_pred ceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEE
Q 030935 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVM 124 (169)
Q Consensus 48 g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~ 124 (169)
|...|..--.-++++.++.+...+.+|||||||+|.+|+.+++.+ ++|+++|.+ +.+++.+++|++.|+... ...
T Consensus 206 gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S--~~Av~~A~~N~~~n~~~~~~~v 283 (378)
T PRK15001 206 NVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES--PMAVASSRLNVETNMPEALDRC 283 (378)
T ss_pred CccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCcccCceE
Confidence 333443323334455555443345699999999999999999874 599999999 569999999999887542 123
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCC-----ChHHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDAS-----GKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~-----~~~~l~~~l~~~L~p~ 169 (169)
.+.+++......+.+||+|+|+.+++... ....+++...+.|+|+
T Consensus 284 ~~~~~D~l~~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpG 333 (378)
T PRK15001 284 EFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 333 (378)
T ss_pred EEEEccccccCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccC
Confidence 35566654444445899999987776432 2457888889999986
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=111.83 Aligned_cols=97 Identities=19% Similarity=0.210 Sum_probs=79.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..++.+++.|.+|+++|++ ++|++.+++++...+...+ +...+..+. ....+.+||+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s--~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l-~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLS--AEMIQRAKQAAEAKGVSDNMQFIHCAAQDI-AQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCccceEEEEcCHHHH-hhhcCCCCCEEEehh
Confidence 56799999999999999999999999999999 5699999999988776433 222222222 122346899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 121 vl~~~~~~~~~l~~~~~~Lkpg 142 (255)
T PRK11036 121 VLEWVADPKSVLQTLWSVLRPG 142 (255)
T ss_pred HHHhhCCHHHHHHHHHHHcCCC
Confidence 9999999999999999999996
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=104.50 Aligned_cols=106 Identities=19% Similarity=0.126 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.+..|.+++. ..++++|||+|||+|.+++.+++.+.+|+++|++ +++++.+++|++.++..+++...++.+
T Consensus 7 d~~~l~~~l~----~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~--- 77 (179)
T TIGR00537 7 DSLLLEANLR----ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDIN--PFAVKELRENAKLNNVGLDVVMTDLFK--- 77 (179)
T ss_pred cHHHHHHHHH----hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHHcCCceEEEEccccc---
Confidence 3455666653 3356789999999999999999988899999999 579999999999888765544333322
Q ss_pred CCCCCCCcEEEEcCcCCCCCC---------------------hHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDASG---------------------KICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~~---------------------~~~l~~~l~~~L~p~ 169 (169)
. ...+||+|+++.+++.... ++.+++.+.+.|+|+
T Consensus 78 ~-~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 78 G-VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred c-cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 2 2348999999887764432 466888889999985
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=108.12 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=91.2
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
....+.+.+.+..++|. .+.+..+.+++.... .++++|||+|||+|++++.+++.|+ +|+++|++ +.+++.++
T Consensus 86 ~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~~--~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis--~~~l~~A~ 159 (250)
T PRK00517 86 DEINIELDPGMAFGTGT--HPTTRLCLEALEKLV--LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDID--PQAVEAAR 159 (250)
T ss_pred CeEEEEECCCCccCCCC--CHHHHHHHHHHHhhc--CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECC--HHHHHHHH
Confidence 45567777777777776 777888777776543 3678999999999999999999887 59999999 56999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|++.|++...+. +.-+ +.+||+|+++-. ...+..+++.+.+.|+|+
T Consensus 160 ~n~~~~~~~~~~~-~~~~-------~~~fD~Vvani~---~~~~~~l~~~~~~~Lkpg 206 (250)
T PRK00517 160 ENAELNGVELNVY-LPQG-------DLKADVIVANIL---ANPLLELAPDLARLLKPG 206 (250)
T ss_pred HHHHHcCCCceEE-EccC-------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCC
Confidence 9999998743222 2111 117999998532 234567888999999986
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-14 Score=95.74 Aligned_cols=89 Identities=21% Similarity=0.173 Sum_probs=70.7
Q ss_pred EEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCC
Q 030935 75 VELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS 153 (169)
Q Consensus 75 LElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~ 153 (169)
||+|||+|..+..+++. +.+|+++|.+ +++++.++++....+.. +...+..+. ++.+.+||+|++..++++.+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~--~~~~~~~~~~~~~~~~~--~~~~d~~~l--~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDIS--EEMLEQARKRLKNEGVS--FRQGDAEDL--PFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES---HHHHHHHHHHTTTSTEE--EEESBTTSS--SS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCC--HHHHHHHHhcccccCch--heeehHHhC--ccccccccccccccceeecc
Confidence 89999999999999999 7799999999 56999999987755544 333333332 45567999999999999999
Q ss_pred ChHHHHHHHHHhccCC
Q 030935 154 GKICAFEILICSLFPI 169 (169)
Q Consensus 154 ~~~~l~~~l~~~L~p~ 169 (169)
+.+.+++.+.+.|||+
T Consensus 75 ~~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 75 DPEAALREIYRVLKPG 90 (95)
T ss_dssp HHHHHHHHHHHHEEEE
T ss_pred CHHHHHHHHHHHcCcC
Confidence 9999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.6e-13 Score=110.49 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=80.6
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l 126 (169)
..|++-.... .+..+....+|++|||+|||+|..+..++..|+ .|+++|.+ +.++..++...+.. ..++.+...
T Consensus 103 ~ew~s~~k~~-~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S--~~~l~q~~a~~~~~~~~~~i~~~~~ 179 (322)
T PRK15068 103 TEWRSDWKWD-RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPS--QLFLCQFEAVRKLLGNDQRAHLLPL 179 (322)
T ss_pred ceehHHhHHH-HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCC--HHHHHHHHHHHHhcCCCCCeEEEeC
Confidence 3566544433 233344456889999999999999999999887 69999999 44765544332222 223333333
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+. +. +.+||+|+|..++||..+...+++.+++.|+||
T Consensus 180 d~e~l--p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpG 219 (322)
T PRK15068 180 GIEQL--PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPG 219 (322)
T ss_pred CHHHC--CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCC
Confidence 22222 22 568999999999999999999999999999996
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.4e-13 Score=109.27 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=74.0
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHH--hCCcceEEEEEcCCCCcCCCCCCCc
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDASIFDLNPN 141 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~--n~~~~~~~~l~~~~~~~~~~~~~fD 141 (169)
+....+|++|||+|||+|.....++..|+ .|+++|.++ .|+..++...+. +...+.+......+. ....+||
T Consensus 116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~--~ml~q~~~~~~~~~~~~~v~~~~~~ie~l---p~~~~FD 190 (314)
T TIGR00452 116 HLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTV--LFLCQFEAVRKLLDNDKRAILEPLGIEQL---HELYAFD 190 (314)
T ss_pred hcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCH--HHHHHHHHHHHHhccCCCeEEEECCHHHC---CCCCCcC
Confidence 34567889999999999999999888887 699999994 587665433222 122223322222222 1234899
Q ss_pred EEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 142 IILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|+|..++||..+...+++.+++.|+||
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpG 218 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIK 218 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999996
|
Known examples to date are restricted to the proteobacteria. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.1e-15 Score=100.23 Aligned_cols=93 Identities=13% Similarity=-0.008 Sum_probs=60.7
Q ss_pred EEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 75 VELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 75 LElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
||+|||+|..+..++.. ..+++++|+|+. |++.+++++....... ....+.-.+........+||+|+++.++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~--~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPS--MLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSS--TTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHH--HHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 79999999999988887 569999999975 9988888877665432 222222222222222359999999999999
Q ss_pred CCChHHHHHHHHHhccCC
Q 030935 152 ASGKICAFEILICSLFPI 169 (169)
Q Consensus 152 ~~~~~~l~~~l~~~L~p~ 169 (169)
.++.+.+++.+.+.|+||
T Consensus 79 l~~~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 79 LEDIEAVLRNIYRLLKPG 96 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS
T ss_pred hhhHHHHHHHHHHHcCCC
Confidence 999999999999999997
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=103.59 Aligned_cols=98 Identities=21% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
...+..++||||||.|.-++++|++|..|+++|.+ +..++.+++.++..+++++....+.... ..+..||+|+++
T Consensus 27 ~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s--~~al~~l~~~a~~~~l~i~~~~~Dl~~~---~~~~~yD~I~st 101 (192)
T PF03848_consen 27 PLLKPGKALDLGCGEGRNALYLASQGFDVTAVDIS--PVALEKLQRLAEEEGLDIRTRVADLNDF---DFPEEYDFIVST 101 (192)
T ss_dssp TTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESS--HHHHHHHHHHHHHTT-TEEEEE-BGCCB---S-TTTEEEEEEE
T ss_pred hhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHhhcCceeEEEEecchhc---cccCCcCEEEEE
Confidence 34567899999999999999999999999999999 5689999888888888876665554432 234689999987
Q ss_pred CcCCC--CCChHHHHHHHHHhccCC
Q 030935 147 DVFYD--ASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~--~~~~~~l~~~l~~~L~p~ 169 (169)
-++++ .+..+.+++.+++.++||
T Consensus 102 ~v~~fL~~~~~~~i~~~m~~~~~pG 126 (192)
T PF03848_consen 102 VVFMFLQRELRPQIIENMKAATKPG 126 (192)
T ss_dssp SSGGGS-GGGHHHHHHHHHHTEEEE
T ss_pred EEeccCCHHHHHHHHHHHHhhcCCc
Confidence 66654 466788999999999986
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=114.64 Aligned_cols=114 Identities=14% Similarity=0.039 Sum_probs=84.3
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++.+..-++.+.+.....++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|....+..+.+...++..
T Consensus 248 v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS--~~~l~~A~~~~~~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 248 STGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS--VNMISFALERAIGRKCSVEFEVADCTK 325 (475)
T ss_pred CCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHhhcCCCceEEEEcCccc
Confidence 3334434444444444446789999999999999988875 6799999999 569999998876333334433333322
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+..+.+||+|++.+++++..+.+.+++.+.+.|+|+
T Consensus 326 --~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~Lkpg 362 (475)
T PLN02336 326 --KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPG 362 (475)
T ss_pred --CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCC
Confidence 1233458999999999999999999999999999996
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.9e-13 Score=104.70 Aligned_cols=113 Identities=16% Similarity=0.038 Sum_probs=88.7
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.-.+.|... +.......+|.+|||+|||||-+++.+++.. ++|+++|+| +.|++.+++.+...+... .
T Consensus 34 g~~~~Wr~~------~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s--~~ML~~a~~k~~~~~~~~--i 103 (238)
T COG2226 34 GLHRLWRRA------LISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS--ESMLEVAREKLKKKGVQN--V 103 (238)
T ss_pred cchHHHHHH------HHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC--HHHHHHHHHHhhccCccc--e
Confidence 345778763 3333323378999999999999999999975 599999999 469999999988655442 2
Q ss_pred EEEcCCC-CcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 125 GLTWGFL-DASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~-~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.-++. ..++.+.+||+|.++-.+.+..+++..++.+.+.||||
T Consensus 104 ~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg 149 (238)
T COG2226 104 EFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG 149 (238)
T ss_pred EEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC
Confidence 2333333 33566789999999999999999999999999999997
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=111.31 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=74.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
..+|||+|||+|.+++.+++++. +|+++|++ +.+++.+++|++.|++..++ .+.+.... .+.+||+|+++.+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis--~~Al~~A~~nl~~n~l~~~~---~~~D~~~~-~~~~fDlIvsNPP 270 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVS--AAALESSRATLAANGLEGEV---FASNVFSD-IKGRFDMIISNPP 270 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCEE---EEcccccc-cCCCccEEEECCC
Confidence 45899999999999999998754 89999999 56999999999999886543 34443332 3468999999888
Q ss_pred CCCC-----CChHHHHHHHHHhccCC
Q 030935 149 FYDA-----SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~-----~~~~~l~~~l~~~L~p~ 169 (169)
+|+. ...+.+++...+.|+|+
T Consensus 271 FH~g~~~~~~~~~~~i~~a~~~Lkpg 296 (342)
T PRK09489 271 FHDGIQTSLDAAQTLIRGAVRHLNSG 296 (342)
T ss_pred ccCCccccHHHHHHHHHHHHHhcCcC
Confidence 7753 34578999999999986
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.9e-13 Score=102.30 Aligned_cols=111 Identities=17% Similarity=0.157 Sum_probs=82.9
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+.+..|++++.... ..++.+|||+|||+|.+++.+++.++ +|+++|++ +.+++.+++|++.++..+.+...++.
T Consensus 20 ~ds~~l~~~l~~~~-~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s--~~~l~~a~~n~~~~~~~~~~~~~d~~-- 94 (223)
T PRK14967 20 EDTQLLADALAAEG-LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDIS--RRAVRSARLNALLAGVDVDVRRGDWA-- 94 (223)
T ss_pred CcHHHHHHHHHhcc-cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECC--HHHHHHHHHHHHHhCCeeEEEECchh--
Confidence 35778888876542 34678999999999999999998876 89999999 56999999999988876554443333
Q ss_pred CcCCCCCCCcEEEEcCcCCCCCC---------------------hHHHHHHHHHhccCC
Q 030935 132 DASIFDLNPNIILGADVFYDASG---------------------KICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~~~---------------------~~~l~~~l~~~L~p~ 169 (169)
......+||+|+++.+.+.... +..+++.+.+.|+|+
T Consensus 95 -~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g 152 (223)
T PRK14967 95 -RAVEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG 152 (223)
T ss_pred -hhccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC
Confidence 2333468999999765442211 456778888889885
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.8e-13 Score=99.19 Aligned_cols=111 Identities=21% Similarity=0.127 Sum_probs=83.2
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc---ceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~---~~~~~l 126 (169)
..++.+.+|.+++.. .++++|||+|||+|..+..+++.+++|+++|++ +++++.+++|+..++.. +.+...
T Consensus 7 ~p~~~~~~l~~~~~~----~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~~ 80 (188)
T PRK14968 7 EPAEDSFLLAENAVD----KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDIN--PYAVECAKCNAKLNNIRNNGVEVIRS 80 (188)
T ss_pred CcchhHHHHHHhhhc----cCCCEEEEEccccCHHHHHHHhhcceEEEEECC--HHHHHHHHHHHHHcCCCCcceEEEec
Confidence 346677777777753 467899999999999999999998899999999 56999999999888765 333322
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCC---------------------ChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDAS---------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~---------------------~~~~l~~~l~~~L~p~ 169 (169)
+......+.+||+|+++.+++... .++.+++.+.+.|+|+
T Consensus 81 ---d~~~~~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 81 ---DLFEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ---cccccccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 222333444899999977665421 2456889999999985
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-13 Score=105.24 Aligned_cols=103 Identities=15% Similarity=0.001 Sum_probs=78.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|++ +.|++.++++... ..+...+... .+..+.
T Consensus 31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s--~~~l~~a~~~~~~----~~~~~~d~~~--~~~~~~ 102 (251)
T PRK10258 31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLS--PPMLAQARQKDAA----DHYLAGDIES--LPLATA 102 (251)
T ss_pred HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECC--HHHHHHHHhhCCC----CCEEEcCccc--CcCCCC
Confidence 3444443333356799999999999999998888999999999 5699988876431 1222222222 123445
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|+++.++++..++..+++.+.+.|+|+
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~g 133 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPG 133 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999996
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.3e-13 Score=104.65 Aligned_cols=102 Identities=17% Similarity=0.128 Sum_probs=77.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
++.+.......++.+|||+|||+|.++..+++. +.+|+++|++ +.|++.++++.. ++.+. .++......
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s--~~~i~~a~~~~~----~~~~~---~~d~~~~~~ 90 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSS--PAMLAEARSRLP----DCQFV---EADIASWQP 90 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHhCC----CCeEE---ECchhccCC
Confidence 334444444456789999999999999988876 4589999999 569999987642 12222 223222223
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 91 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 123 (258)
T PRK01683 91 PQALDLIFANASLQWLPDHLELFPRLVSLLAPG 123 (258)
T ss_pred CCCccEEEEccChhhCCCHHHHHHHHHHhcCCC
Confidence 458999999999999999999999999999996
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.1e-13 Score=106.49 Aligned_cols=114 Identities=12% Similarity=0.030 Sum_probs=83.7
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
++-|.+..-+..+.......++.+|||+|||+|..+..+++. +++|+++|++ +.+++.++++.... ..+.+. .
T Consensus 32 ~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s--~~~~~~a~~~~~~~-~~i~~~---~ 105 (263)
T PTZ00098 32 YISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDIC--EKMVNIAKLRNSDK-NKIEFE---A 105 (263)
T ss_pred CCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECC--HHHHHHHHHHcCcC-CceEEE---E
Confidence 344444444555665555667889999999999999888764 6799999999 56999998876532 223322 3
Q ss_pred CCCCc-CCCCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 129 GFLDA-SIFDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~-~~~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
++... +..+.+||+|++.+++++.. +...+++.+.+.|+|+
T Consensus 106 ~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPG 149 (263)
T PTZ00098 106 NDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPN 149 (263)
T ss_pred CCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCC
Confidence 33322 33456899999999888764 7899999999999996
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.6e-13 Score=106.13 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=72.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...++.+|||+|||+|.++..+++. +.+|+++|++ +.|++.++++ ++ .+.. ++........+||+|+
T Consensus 26 ~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s--~~~~~~a~~~----~~--~~~~---~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 26 GAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSS--PEMVAAARER----GV--DART---GDVRDWKPKPDTDVVV 94 (255)
T ss_pred CCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHhc----CC--cEEE---cChhhCCCCCCceEEE
Confidence 3446789999999999999999887 5699999999 5699988653 22 2332 3322222345899999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++.++++..+.+.+++.+.+.|+||
T Consensus 95 ~~~~l~~~~d~~~~l~~~~~~Lkpg 119 (255)
T PRK14103 95 SNAALQWVPEHADLLVRWVDELAPG 119 (255)
T ss_pred EehhhhhCCCHHHHHHHHHHhCCCC
Confidence 9999999999999999999999996
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-12 Score=103.12 Aligned_cols=97 Identities=19% Similarity=0.091 Sum_probs=74.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHH--hCC--cceEEEEEcCCCCc-CCCCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEM--NKL--NCRVMGLTWGFLDA-SIFDLN 139 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~--n~~--~~~~~~l~~~~~~~-~~~~~~ 139 (169)
..++.+|||+|||||.++..+++. + .+|+++|++ ++|++.++++... ... ++++. .++... +..+.+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S--~~ml~~A~~r~~~~~~~~~~~i~~~---~~d~~~lp~~~~s 145 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS--SEQLAVAASRQELKAKSCYKNIEWI---EGDATDLPFDDCY 145 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHhhhhhhccCCCeEEE---EcccccCCCCCCC
Confidence 346789999999999999988875 3 489999999 5699999876542 111 22222 233322 344568
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|+++.++++..+...+++.+.+.|+||
T Consensus 146 fD~V~~~~~l~~~~d~~~~l~ei~rvLkpG 175 (261)
T PLN02233 146 FDAITMGYGLRNVVDRLKAMQEMYRVLKPG 175 (261)
T ss_pred EeEEEEecccccCCCHHHHHHHHHHHcCcC
Confidence 999999999999999999999999999996
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=100.61 Aligned_cols=100 Identities=14% Similarity=0.046 Sum_probs=77.3
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
...++.+|||+|||+|..+..+++. + .+|+++|++ +.+++.++++++.++.. ++....+.....+..+.+||+|
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V 118 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS--ENMLSVGRQKVKDAGLH-NVELVHGNAMELPFDDNSFDYV 118 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHhcCCC-ceEEEEechhcCCCCCCCccEE
Confidence 3446789999999999999988875 3 489999999 56999999998776653 2222222221122334689999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++.+..+...+++.+.+.|+|+
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~g 144 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPG 144 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcC
Confidence 99999999999999999999999996
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-13 Score=105.76 Aligned_cols=110 Identities=18% Similarity=0.091 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
-....+++.......+|.+|||||||.|.+++.+++. |++|+++.+| ++..+.+++.++..++..++. +...+...
T Consensus 47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS--~~Q~~~a~~~~~~~gl~~~v~-v~~~D~~~ 123 (273)
T PF02353_consen 47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLS--EEQAEYARERIREAGLEDRVE-VRLQDYRD 123 (273)
T ss_dssp HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHCSTSSSTEE-EEES-GGG
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEEeeccc
Confidence 4445567777777889999999999999999999987 9999999999 569999999999888764433 33344332
Q ss_pred CCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||-|++-.++.+. ..++.+++.+.+.|+|+
T Consensus 124 --~~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg 159 (273)
T PF02353_consen 124 --LPGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG 159 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT
T ss_pred --cCCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC
Confidence 22399999999999988 67899999999999996
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-12 Score=98.10 Aligned_cols=91 Identities=20% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
++.+|||+|||+|..++.+++. +++|+++|.+ +++++.+++|++.++++ +++...+..+ .....+||+|++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s--~~~l~~A~~~~~~~~l~~i~~~~~d~~~---~~~~~~fDlV~~~ 119 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSL--GKKIAFLREVAAELGLKNVTVVHGRAEE---FGQEEKFDVVTSR 119 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCc--HHHHHHHHHHHHHcCCCCEEEEeccHhh---CCCCCCccEEEEc
Confidence 3789999999999999988863 4599999999 56999999999998875 3333333222 1224589999986
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. ...++.+++.+.+.|+|+
T Consensus 120 ~----~~~~~~~l~~~~~~LkpG 138 (187)
T PRK00107 120 A----VASLSDLVELCLPLLKPG 138 (187)
T ss_pred c----ccCHHHHHHHHHHhcCCC
Confidence 4 356889999999999996
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=101.84 Aligned_cols=110 Identities=16% Similarity=0.120 Sum_probs=87.2
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
...+|+.......++.+|||+|||+|.++..+++.+++|+++|.+ +.+++.++.++..++....+...++..... ..
T Consensus 35 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~ 111 (233)
T PRK05134 35 LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDAS--EENIEVARLHALESGLKIDYRQTTAEELAA-EH 111 (233)
T ss_pred HHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCC--HHHHHHHHHHHHHcCCceEEEecCHHHhhh-hc
Confidence 334666666555678899999999999999999988899999999 569999999988776655444343333211 12
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~g 144 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPG 144 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCC
Confidence 358999999999999999999999999999985
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=106.51 Aligned_cols=92 Identities=23% Similarity=0.277 Sum_probs=68.0
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
|.+..|.+.+......... +|||||||||.+++.+++.+. +|+++|+| +++++.|++|++.|++ .++..... +
T Consensus 94 ~dTe~Lve~~l~~~~~~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis--~~Al~~A~~Na~~~~l-~~~~~~~~-d 168 (280)
T COG2890 94 PDTELLVEAALALLLQLDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDIS--PDALALARENAERNGL-VRVLVVQS-D 168 (280)
T ss_pred CchHHHHHHHHHhhhhcCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECC--HHHHHHHHHHHHHcCC-ccEEEEee-e
Confidence 4577777776522211112 799999999999999999875 89999999 6799999999999997 44333333 4
Q ss_pred CCcCCCCCCCcEEEEcCcCC
Q 030935 131 LDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy 150 (169)
+..+... +||+|+++.+.=
T Consensus 169 lf~~~~~-~fDlIVsNPPYi 187 (280)
T COG2890 169 LFEPLRG-KFDLIVSNPPYI 187 (280)
T ss_pred cccccCC-ceeEEEeCCCCC
Confidence 4444433 999999876653
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=99.86 Aligned_cols=89 Identities=24% Similarity=0.145 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++++|||+|||+|..+..+++.|.+|+++|++ +.+++. .........-. .....+.+||+|+|++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~--~~~~~~---------~~~~~~~~~~~--~~~~~~~~fD~i~~~~ 86 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDIS--PQMIEK---------RNVVFDNFDAQ--DPPFPDGSFDLIICND 86 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESS--HHHHHH---------TTSEEEEEECH--THHCHSSSEEEEEEES
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHhh---------hhhhhhhhhhh--hhhccccchhhHhhHH
Confidence 3467899999999999999999999999999999 457766 11111111111 1122456999999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 87 ~l~~~~d~~~~l~~l~~~Lkpg 108 (161)
T PF13489_consen 87 VLEHLPDPEEFLKELSRLLKPG 108 (161)
T ss_dssp SGGGSSHHHHHHHHHHHCEEEE
T ss_pred HHhhcccHHHHHHHHHHhcCCC
Confidence 9999999999999999999985
|
... |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.9e-13 Score=103.86 Aligned_cols=111 Identities=18% Similarity=0.100 Sum_probs=72.4
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (169)
.+.|.. .+.+.+ ...+|.+|||+|||||.++..+++. + .+|+++|++ ++|++.++++++..+.. ++.
T Consensus 32 ~~~wr~--~~~~~~----~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s--~~ML~~a~~k~~~~~~~-~i~- 101 (233)
T PF01209_consen 32 DRRWRR--KLIKLL----GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDIS--PGMLEVARKKLKREGLQ-NIE- 101 (233)
T ss_dssp -----S--HHHHHH----T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES---HHHHHHHHHHHHHTT---SEE-
T ss_pred HHHHHH--HHHhcc----CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCC--HHHHHHHHHHHHhhCCC-Cee-
Confidence 456776 333333 3346789999999999999998875 3 489999999 67999999999876653 222
Q ss_pred EEcCCC-CcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 126 LTWGFL-DASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~-~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..++. ..++.+.+||+|+++-.+.+..+.+..++.+.+.||||
T Consensus 102 ~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPG 146 (233)
T PF01209_consen 102 FVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPG 146 (233)
T ss_dssp EEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEE
T ss_pred EEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCC
Confidence 333333 23455679999999999999999999999999999996
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=98.18 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.++.+|||+|||+|.+++.+++.+ ++|+++|.+ +.+++.+++|++.+++. +++...+..+ .....+||+|++
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s--~~~~~~a~~~~~~~~~~~i~~i~~d~~~---~~~~~~fD~I~s 115 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESN--HKKVAFLREVKAELGLNNVEIVNGRAED---FQHEEQFDVITS 115 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCc--HHHHHHHHHHHHHhCCCCeEEEecchhh---ccccCCccEEEe
Confidence 358899999999999999988765 489999999 46999999999888764 3333333322 223458999998
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. ...++.+++.+.+.|+|+
T Consensus 116 ~~----~~~~~~~~~~~~~~Lkpg 135 (181)
T TIGR00138 116 RA----LASLNVLLELTLNLLKVG 135 (181)
T ss_pred hh----hhCHHHHHHHHHHhcCCC
Confidence 54 345788999999999986
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=102.78 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~~ 131 (169)
...-.+.+.+.....+|.+|||+|||-|.+++.+|+. |.+|+++++| ++..+.+++.++..++. +++.-.+|.++
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS--~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLS--EEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCC--HHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 3334455666677779999999999999999999986 7899999999 56999999999988887 44444555544
Q ss_pred CcCCCCCCCcEEEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 132 DASIFDLNPNIILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
. ++||-|++-..+.+... .+.+|+.+.+.|+|+
T Consensus 135 ~-----e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~ 169 (283)
T COG2230 135 E-----EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG 169 (283)
T ss_pred c-----cccceeeehhhHHHhCcccHHHHHHHHHhhcCCC
Confidence 2 35999999999998866 999999999999996
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-12 Score=100.10 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=76.0
Q ss_pred CeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++|||+|||+|..+..+++.. .+|+++|++ +++++.+++++...++..++. +...+......+.+||+|++..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s--~~~~~~a~~~~~~~gl~~~i~-~~~~d~~~~~~~~~fD~I~~~~~l 77 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTIS--PEQAEVGRERIRALGLQGRIR-IFYRDSAKDPFPDTYDLVFGFEVI 77 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhcCCCcceE-EEecccccCCCCCCCCEeehHHHH
Confidence 479999999999999888764 589999999 579999999998877654332 222332222234589999999999
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
++..+.+.+++.+.+.|+|+
T Consensus 78 ~~~~~~~~~l~~~~~~Lkpg 97 (224)
T smart00828 78 HHIKDKMDLFSNISRHLKDG 97 (224)
T ss_pred HhCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999996
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-12 Score=99.18 Aligned_cols=97 Identities=22% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++.+|||+|||+|.++..+++.+.+|+++|++ ++|++.+++++..++....+. +..++.... +.+||+|++++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s--~~~i~~a~~~~~~~~~~~~i~-~~~~d~~~~--~~~fD~ii~~~ 127 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDIS--EQMVQMARNRAQGRDVAGNVE-FEVNDLLSL--CGEFDIVVCMD 127 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEECChhhC--CCCcCEEEEhh
Confidence 4567899999999999999999988899999999 569999999987766522211 222332221 26899999999
Q ss_pred cCCCC--CChHHHHHHHHHhccCC
Q 030935 148 VFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
++++. .....+++.+.+.++|+
T Consensus 128 ~l~~~~~~~~~~~l~~i~~~~~~~ 151 (219)
T TIGR02021 128 VLIHYPASDMAKALGHLASLTKER 151 (219)
T ss_pred HHHhCCHHHHHHHHHHHHHHhCCC
Confidence 98765 34667788888777663
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-12 Score=97.18 Aligned_cols=114 Identities=14% Similarity=-0.001 Sum_probs=84.5
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
||-....-+.+.......++.+|||+|||+|..+..+++.. .+|+++|.+ +.+++.++++.......+.+...+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~--~~~~~~a~~~~~~~~~~~~~~~~d~ 78 (241)
T PRK08317 1 LPDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRS--EAMLALAKERAAGLGPNVEFVRGDA 78 (241)
T ss_pred CchHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCC--HHHHHHHHHHhhCCCCceEEEeccc
Confidence 34445555566666566678899999999999999888753 489999999 5699999887433333333333222
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. .+..+.+||+|++..++.+..+...+++.+.+.|+|+
T Consensus 79 ~~--~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g 117 (241)
T PRK08317 79 DG--LPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG 117 (241)
T ss_pred cc--CCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC
Confidence 22 1233468999999999999999999999999999996
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=85.46 Aligned_cols=105 Identities=14% Similarity=0.050 Sum_probs=75.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-- 133 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-- 133 (169)
+..++.......++.+|||+|||+|..+..+++.. .+|+++|++ +.+++.+++|++.++... + .+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~~~ 82 (124)
T TIGR02469 7 VRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERN--PEALRLIERNARRFGVSN-I-VIVEGDAPEAL 82 (124)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCC--HHHHHHHHHHHHHhCCCc-e-EEEeccccccC
Confidence 33444444445567799999999999999998863 489999999 569999999998876541 2 233333221
Q ss_pred CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.....+||+|++.... ...+.+++.+.+.|+|+
T Consensus 83 ~~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~g 115 (124)
T TIGR02469 83 EDSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPG 115 (124)
T ss_pred hhhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCC
Confidence 1123589999986532 45678999999999986
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=92.35 Aligned_cols=103 Identities=13% Similarity=0.074 Sum_probs=75.7
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
...+.......++.+|||+|||+|.+++.+++.+ .+|+++|.+ +.+++.+++|++.+++. ++. +..++.... .
T Consensus 20 r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s--~~~~~~a~~n~~~~~~~-~i~-~~~~d~~~~-~ 94 (187)
T PRK08287 20 RALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERN--PDALRLIKENRQRFGCG-NID-IIPGEAPIE-L 94 (187)
T ss_pred HHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHhCCC-CeE-EEecCchhh-c
Confidence 3344333344477899999999999999998875 489999999 56999999999888764 222 333443222 2
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++.... ..++.+++.+.+.|+|+
T Consensus 95 ~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~g 124 (187)
T PRK08287 95 PGKADAIFIGGSG---GNLTAIIDWSLAHLHPG 124 (187)
T ss_pred CcCCCEEEECCCc---cCHHHHHHHHHHhcCCC
Confidence 4589999986543 35788999999999986
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=97.15 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=78.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.++.+|||+|||+|.++..+++.+.+++++|.+ +.+++.+++++..++. .+.+...+..+.... .+.+||+|+++.
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s--~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~D~i~~~~ 120 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARLGANVTGIDAS--EENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK-GAKSFDVVTCME 120 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC-CCCCccEEEehh
Confidence 457899999999999999998888899999999 5699999999887766 344333332222111 135899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 121 ~l~~~~~~~~~l~~~~~~L~~g 142 (224)
T TIGR01983 121 VLEHVPDPQAFIRACAQLLKPG 142 (224)
T ss_pred HHHhCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999985
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=99.24 Aligned_cols=97 Identities=19% Similarity=0.067 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|.+++.+++.. ++|+++|++ +.+++.+++|++.+++..++. +..++......+.+||+|+++.
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis--~~al~~A~~n~~~~~~~~~i~-~~~~D~~~~~~~~~fD~Iv~NP 197 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDIS--PDALAVAEINIERHGLEDRVT-LIQSDLFAALPGRKYDLIVSNP 197 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEECchhhccCCCCccEEEECC
Confidence 35689999999999999999864 599999999 569999999999998753322 2333433333344899999875
Q ss_pred cCCCCC-------------------------ChHHHHHHHHHhccCC
Q 030935 148 VFYDAS-------------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~-------------------------~~~~l~~~l~~~L~p~ 169 (169)
+..... .+..+++.+.+.|+|+
T Consensus 198 Py~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~g 244 (284)
T TIGR03533 198 PYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNEN 244 (284)
T ss_pred CCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 532211 1355677778888885
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-12 Score=100.44 Aligned_cols=115 Identities=16% Similarity=0.150 Sum_probs=78.3
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
.|.+-..-.. +..+...++|++|||||||.|..+.-++..|+ .|+++|-+. ..+.+.+.-.+..+.+..+..+..+
T Consensus 97 EWrSd~KW~r-l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~--lf~~QF~~i~~~lg~~~~~~~lplg 173 (315)
T PF08003_consen 97 EWRSDWKWDR-LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP--LFYLQFEAIKHFLGQDPPVFELPLG 173 (315)
T ss_pred cccccchHHH-HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh--HHHHHHHHHHHHhCCCccEEEcCcc
Confidence 3554433333 33344568999999999999999999999998 699999884 2333322211222222233333222
Q ss_pred CCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
-...+. ...||+|+|--|+||..+.-..++.|++.|+||
T Consensus 174 vE~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~g 212 (315)
T PF08003_consen 174 VEDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPG 212 (315)
T ss_pred hhhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCC
Confidence 111122 458999999999999999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.39 E-value=5e-13 Score=90.90 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=69.6
Q ss_pred EEEECCCCCHHHHHHHHhC-----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 74 VVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~g-----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
|||+|||+|.....+++.. .+++++|++ ++|++.++++....+.++++...+..+. +....+||+|+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s--~~~l~~~~~~~~~~~~~~~~~~~D~~~l--~~~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDIS--PEMLELAKKRFSEDGPKVRFVQADARDL--PFSDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES---HHHHHHHHHHSHHTTTTSEEEESCTTCH--HHHSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECC--HHHHHHHHHhchhcCCceEEEECCHhHC--cccCCCeeEEEEcCC
Confidence 7999999999999998874 699999999 6799999999987777766654444432 223459999999655
Q ss_pred -CCCC--CChHHHHHHHHHhccCC
Q 030935 149 -FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 -iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. ...+.+++.+.+.|+|+
T Consensus 77 ~~~~~~~~~~~~ll~~~~~~l~pg 100 (101)
T PF13649_consen 77 SLHHLSPEELEALLRRIARLLRPG 100 (101)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCC
Confidence 5544 46789999999999985
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.3e-12 Score=97.61 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||||.++..+++. +.+|+++|.+ ++|++.++.+. .....+... .+..+.+||+|+++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S--~~Ml~~a~~~~-------~~~~~d~~~--lp~~d~sfD~v~~~~~ 119 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYA--ENMLKMNLVAD-------DKVVGSFEA--LPFRDKSFDVVMSSFA 119 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHhcc-------ceEEechhh--CCCCCCCEEEEEecCh
Confidence 3679999999999999999887 5799999999 56999887641 112122222 2445679999999999
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
+++..+.+.+++.+++.|+|
T Consensus 120 l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 120 LHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred hhccCCHHHHHHHHHHHhcC
Confidence 99999999999999999998
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.4e-12 Score=102.39 Aligned_cols=89 Identities=17% Similarity=0.156 Sum_probs=65.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC------CcceEEEEEcCCCCcCCCCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK------LNCRVMGLTWGFLDASIFDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~------~~~~~~~l~~~~~~~~~~~~~fDl 142 (169)
.++.+|||+|||+|.+++.+++.|.+|+++|++ +.|++.++++.+... ...++.. .+... .+.+||+
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S--~~ml~~A~~~~~~~~~~~~~~~~~~f~~---~Dl~~--l~~~fD~ 215 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDIS--AAMVAEAERRAKEALAALPPEVLPKFEA---NDLES--LSGKYDT 215 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcccccccccceEEEE---cchhh--cCCCcCE
Confidence 467899999999999999999999999999999 569999999987542 1122222 23211 2468999
Q ss_pred EEEcCcCCCCCC--hHHHHHHHHH
Q 030935 143 ILGADVFYDASG--KICAFEILIC 164 (169)
Q Consensus 143 Ii~sd~iy~~~~--~~~l~~~l~~ 164 (169)
|+|.++++|... ...+++.+..
T Consensus 216 Vv~~~vL~H~p~~~~~~ll~~l~~ 239 (315)
T PLN02585 216 VTCLDVLIHYPQDKADGMIAHLAS 239 (315)
T ss_pred EEEcCEEEecCHHHHHHHHHHHHh
Confidence 999999876543 3445666654
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-11 Score=93.91 Aligned_cols=106 Identities=13% Similarity=0.015 Sum_probs=75.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+..+..++.+.....++.+|||+|||+|..+..+++. +.+|+++|++ +++++.+++|++.++...++. +..++.
T Consensus 57 ~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~--~~~~~~a~~~l~~~~~~~~v~-~~~~d~ 133 (205)
T PRK13944 57 APHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIV--KELAIYAAQNIERLGYWGVVE-VYHGDG 133 (205)
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCcEE-EEECCc
Confidence 3444556665555557789999999999999888875 3589999999 569999999999887653322 333443
Q ss_pred CcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.... ...+||+|++...+.+ +.+.+.+.|+|+
T Consensus 134 ~~~~~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~g 166 (205)
T PRK13944 134 KRGLEKHAPFDAIIVTAAAST------IPSALVRQLKDG 166 (205)
T ss_pred ccCCccCCCccEEEEccCcch------hhHHHHHhcCcC
Confidence 3222 2348999998876543 335677888885
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=94.99 Aligned_cols=97 Identities=20% Similarity=0.021 Sum_probs=76.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCCCCcCCCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
.++.+|||+|||+|..+..+++.+ .+++++|++ +.+++.+++++..++.. ..+...+..+. .....+||+|
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~I 125 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFS--EGMLAVGREKLRDLGLSGNVEFVQGDAEAL--PFPDNSFDAV 125 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCC--HHHHHHHHHhhcccccccCeEEEecccccC--CCCCCCccEE
Confidence 356899999999999999998876 689999999 46999999998765443 23332332221 2234589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++++..+.+.+++.+.+.|+|+
T Consensus 126 ~~~~~l~~~~~~~~~l~~~~~~L~~g 151 (239)
T PRK00216 126 TIAFGLRNVPDIDKALREMYRVLKPG 151 (239)
T ss_pred EEecccccCCCHHHHHHHHHHhccCC
Confidence 99999999999999999999999986
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-13 Score=91.49 Aligned_cols=97 Identities=25% Similarity=0.129 Sum_probs=72.3
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
|.+|||+|||+|.+++.+++.+ .+++++|++ +..++.++.|+..++...+ +...++.+........+||+|+++.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~--~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~np 78 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDID--PEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNP 78 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESS--HHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEEC--HHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECC
Confidence 4689999999999999999999 799999999 6799999999999887433 3333332222234567999999977
Q ss_pred cCCCCC--------ChHHHHHHHHHhccCC
Q 030935 148 VFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
+..... ....+++.+.+.|+|+
T Consensus 79 P~~~~~~~~~~~~~~~~~~~~~~~~~L~~g 108 (117)
T PF13659_consen 79 PYGPRSGDKAALRRLYSRFLEAAARLLKPG 108 (117)
T ss_dssp STTSBTT----GGCHHHHHHHHHHHHEEEE
T ss_pred CCccccccchhhHHHHHHHHHHHHHHcCCC
Confidence 776431 3467899999999874
|
... |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=98.58 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=76.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlI 143 (169)
..++.+|||+|||+|..++.+++. +. +|+++|.+ +.+++.+++|...++.. ++. +..++... +..+..||+|
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s--~~~l~~A~~~~~~~g~~-~v~-~~~~d~~~l~~~~~~fD~V 150 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMT--PEMLAKARANARKAGYT-NVE-FRLGEIEALPVADNSVDVI 150 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCC--HHHHHHHHHHHHHcCCC-CEE-EEEcchhhCCCCCCceeEE
Confidence 346889999999999998877764 44 79999999 56999999998877663 221 22233322 2334589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++++..+.+.+++.+.+.|+|+
T Consensus 151 i~~~v~~~~~d~~~~l~~~~r~LkpG 176 (272)
T PRK11873 151 ISNCVINLSPDKERVFKEAFRVLKPG 176 (272)
T ss_pred EEcCcccCCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999996
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.8e-12 Score=104.06 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=76.6
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~ 139 (169)
++.+.....++.+|||+|||+|.+++.+++. |++|+++|++ +++++.++++++ +..+++...++.+ .+.+
T Consensus 158 ~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS--~~~l~~A~~~~~--~l~v~~~~~D~~~-----l~~~ 228 (383)
T PRK11705 158 LICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTIS--AEQQKLAQERCA--GLPVEIRLQDYRD-----LNGQ 228 (383)
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHhc--cCeEEEEECchhh-----cCCC
Confidence 4444445557889999999999999988875 7799999999 569999998874 3333333222221 1458
Q ss_pred CcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
||.|++..++++.. .++.+++.+.+.|+|+
T Consensus 229 fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG 260 (383)
T PRK11705 229 FDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD 260 (383)
T ss_pred CCEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 99999999998874 4688999999999996
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=94.51 Aligned_cols=106 Identities=17% Similarity=0.028 Sum_probs=74.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.+..+...+.+.....++.+|||+|||+|..+..+++... +|+++|++ +++++.+++|++.+++. ++. +..++
T Consensus 61 ~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~--~~~~~~A~~~~~~~g~~-~v~-~~~~d 136 (215)
T TIGR00080 61 SAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERI--PELAEKAERRLRKLGLD-NVI-VIVGD 136 (215)
T ss_pred chHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHCCCC-CeE-EEECC
Confidence 3344555565555566788999999999999999998754 59999999 56999999999988764 222 22333
Q ss_pred CCcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..... ...+||+|++.... +.+.+.+.+.|+|+
T Consensus 137 ~~~~~~~~~~fD~Ii~~~~~------~~~~~~~~~~L~~g 170 (215)
T TIGR00080 137 GTQGWEPLAPYDRIYVTAAG------PKIPEALIDQLKEG 170 (215)
T ss_pred cccCCcccCCCCEEEEcCCc------ccccHHHHHhcCcC
Confidence 32222 23489999986543 23445677888886
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=102.32 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=69.1
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
=|.+..+.+.+..... ++.+|||+|||+|.+++.+++. +++|+++|++ +++++.+++|++.++.++++...++.
T Consensus 235 RpeTE~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS--~~ALe~AreNa~~~g~rV~fi~gDl~ 310 (423)
T PRK14966 235 RPETEHLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDIS--PPALETARKNAADLGARVEFAHGSWF 310 (423)
T ss_pred CccHHHHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEcchh
Confidence 3567788888876542 4569999999999999998875 4589999999 57999999999988876555544443
Q ss_pred CCCcCCCCCCCcEEEEcCcC
Q 030935 130 FLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~i 149 (169)
.... ....+||+|+|+.+.
T Consensus 311 e~~l-~~~~~FDLIVSNPPY 329 (423)
T PRK14966 311 DTDM-PSEGKWDIIVSNPPY 329 (423)
T ss_pred cccc-ccCCCccEEEECCCC
Confidence 2111 123479999997753
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=96.20 Aligned_cols=94 Identities=14% Similarity=0.015 Sum_probs=65.5
Q ss_pred chHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 53 PCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
+.+..|.+.+...... ..+.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|++.|+. ++...++.
T Consensus 68 ~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis--~~al~~A~~N~~~~~~--~~~~~D~~ 143 (251)
T TIGR03704 68 RRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADID--PAAVRCARRNLADAGG--TVHEGDLY 143 (251)
T ss_pred ccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCC--EEEEeech
Confidence 4567777777654321 23458999999999999998875 4589999999 5699999999998874 34434443
Q ss_pred CCCcCCCCCCCcEEEEcCcCC
Q 030935 130 FLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~iy 150 (169)
+........+||+|+++.+..
T Consensus 144 ~~l~~~~~~~fDlVv~NPPy~ 164 (251)
T TIGR03704 144 DALPTALRGRVDILAANAPYV 164 (251)
T ss_pred hhcchhcCCCEeEEEECCCCC
Confidence 221111134799999866543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-11 Score=94.50 Aligned_cols=96 Identities=18% Similarity=0.056 Sum_probs=69.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||||||+|.+|+.++..++ +|+++|.+ +++++.+++|++.+++. +.+..-++..... ....+||+|++
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~--~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~-~~~~~fDlV~~- 127 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMD--RAVAQQLIKNLATLKAGNARVVNTNALSFLA-QPGTPHNVVFV- 127 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEEEchHHHHHh-hcCCCceEEEE-
Confidence 3577999999999999997665554 89999999 56999999999998864 3333333222111 12346999997
Q ss_pred CcCCCCCChHHHHHHHHHh--ccC
Q 030935 147 DVFYDASGKICAFEILICS--LFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~--L~p 168 (169)
|+-|.....+.+++.|... |+|
T Consensus 128 DPPy~~g~~~~~l~~l~~~~~l~~ 151 (199)
T PRK10909 128 DPPFRKGLLEETINLLEDNGWLAD 151 (199)
T ss_pred CCCCCCChHHHHHHHHHHCCCcCC
Confidence 5558778888888888764 444
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=97.74 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=77.3
Q ss_pred cchHHHHHHHHHhcc-CCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEE
Q 030935 52 WPCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGL 126 (169)
Q Consensus 52 W~~~~~La~~l~~~~-~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l 126 (169)
-|.+..|.+.+.... ...+..+|||+|||+|.+++.+++.. .+|+++|++ +++++.+++|++.+++. +.+..
T Consensus 95 r~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis--~~al~~a~~n~~~~~~~~~v~~~~- 171 (284)
T TIGR00536 95 RPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDIS--PDALAVAEENAEKNQLEHRVEFIQ- 171 (284)
T ss_pred CCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEE-
Confidence 355666766665432 11123689999999999999999865 489999999 56999999999998875 33333
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCC-------------------------ChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDAS-------------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~-------------------------~~~~l~~~l~~~L~p~ 169 (169)
++........+||+|+++.+..... .+..+++...+.|+|+
T Consensus 172 --~d~~~~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~g 237 (284)
T TIGR00536 172 --SNLFEPLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPN 237 (284)
T ss_pred --CchhccCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCC
Confidence 3333333334899999864332211 2445677777788875
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.8e-11 Score=98.00 Aligned_cols=95 Identities=19% Similarity=0.063 Sum_probs=69.8
Q ss_pred CeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
.+|||+|||+|.+++.+++.. ++|+++|++ +.+++.+++|++.+++..++. +..++......+.+||+|+++.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis--~~al~~A~~n~~~~~l~~~i~-~~~~D~~~~l~~~~fDlIvsNPPy 211 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDIS--PDALAVAEINIERHGLEDRVT-LIESDLFAALPGRRYDLIVSNPPY 211 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCcEE-EEECchhhhCCCCCccEEEECCCC
Confidence 689999999999999999864 589999999 569999999999988753322 334443333334589999997543
Q ss_pred CCC-------------------------CChHHHHHHHHHhccCC
Q 030935 150 YDA-------------------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~-------------------------~~~~~l~~~l~~~L~p~ 169 (169)
... ..+..+++...+.|+|+
T Consensus 212 i~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pg 256 (307)
T PRK11805 212 VDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTED 256 (307)
T ss_pred CCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCC
Confidence 211 11356788888889886
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=91.75 Aligned_cols=77 Identities=25% Similarity=0.231 Sum_probs=61.0
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
.....|++|+|||||||.+|+.++.+|+ +|+++|++ +++++.+++|+......+.+..-+..+ ...++|.+|
T Consensus 41 ~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD--~~a~ei~r~N~~~l~g~v~f~~~dv~~-----~~~~~dtvi 113 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDID--PEALEIARANAEELLGDVEFVVADVSD-----FRGKFDTVI 113 (198)
T ss_pred cCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecC--HHHHHHHHHHHHhhCCceEEEEcchhh-----cCCccceEE
Confidence 4567899999999999999999999998 79999999 679999999999866655544333222 345778888
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+.++
T Consensus 114 mNPPF 118 (198)
T COG2263 114 MNPPF 118 (198)
T ss_pred ECCCC
Confidence 76654
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=96.38 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|..++.+++. +.+|+++|.+ +.|++.+++++..++...++. +..++... .....+|+|++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S--~~ml~~A~~~~~~~~~~~~v~-~~~~d~~~-~~~~~~D~vv~ 131 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS--PAMIERCRRHIDAYKAPTPVD-VIEGDIRD-IAIENASMVVL 131 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCeE-EEeCChhh-CCCCCCCEEeh
Confidence 5679999999999999888762 4699999999 579999999998776643322 22333322 12236899999
Q ss_pred cCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+-++++.. ....+++.+.+.|+||
T Consensus 132 ~~~l~~l~~~~~~~~l~~i~~~LkpG 157 (247)
T PRK15451 132 NFTLQFLEPSERQALLDKIYQGLNPG 157 (247)
T ss_pred hhHHHhCCHHHHHHHHHHHHHhcCCC
Confidence 98887664 3468999999999996
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=5e-12 Score=95.29 Aligned_cols=93 Identities=15% Similarity=0.049 Sum_probs=67.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
-.++||+|||.|.++..+|.++.+++++|++ +.+++.+++.+... ..++ +...+.....++.+||+|+.+.++|
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis--~~Al~~Ar~Rl~~~-~~V~---~~~~dvp~~~P~~~FDLIV~SEVlY 117 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDIS--PRALARARERLAGL-PHVE---WIQADVPEFWPEGRFDLIVLSEVLY 117 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES---HHHHHHHHHHTTT--SSEE---EEES-TTT---SS-EEEEEEES-GG
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCC--HHHHHHHHHhcCCC-CCeE---EEECcCCCCCCCCCeeEEEEehHhH
Confidence 3589999999999999999998899999999 56999999888643 2233 3334444455667999999999999
Q ss_pred CCCC---hHHHHHHHHHhccCC
Q 030935 151 DASG---KICAFEILICSLFPI 169 (169)
Q Consensus 151 ~~~~---~~~l~~~l~~~L~p~ 169 (169)
+... +..+++.+.++|+|+
T Consensus 118 YL~~~~~L~~~l~~l~~~L~pg 139 (201)
T PF05401_consen 118 YLDDAEDLRAALDRLVAALAPG 139 (201)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEE
T ss_pred cCCCHHHHHHHHHHHHHHhCCC
Confidence 9976 456888888999885
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=94.11 Aligned_cols=94 Identities=19% Similarity=0.088 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++++|||+|||+|..+..+++.+. +++++|++ +.+++.++.+... ++.+...+..+. +..+.+||+|+++
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~--~~~~~~~~~~~~~---~~~~~~~d~~~~--~~~~~~fD~vi~~ 105 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDIS--AGMLAQAKTKLSE---NVQFICGDAEKL--PLEDSSFDLIVSN 105 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeCh--HHHHHHHHHhcCC---CCeEEecchhhC--CCCCCceeEEEEh
Confidence 3457899999999999999998764 68999999 5688888776542 223332332221 2344689999999
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++++..+...+++.+.+.|+|+
T Consensus 106 ~~l~~~~~~~~~l~~~~~~L~~~ 128 (240)
T TIGR02072 106 LALQWCDDLSQALSELARVLKPG 128 (240)
T ss_pred hhhhhccCHHHHHHHHHHHcCCC
Confidence 99999999999999999999986
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=92.06 Aligned_cols=106 Identities=14% Similarity=0.056 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.+..+..++.+.....++.+|||+|||+|..+..+++.. .+|+++|++ +++++.+++|++.++.. ++ .+..++
T Consensus 60 ~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~--~~~~~~a~~~l~~~g~~-~v-~~~~gd 135 (212)
T PRK13942 60 SAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERI--PELAEKAKKTLKKLGYD-NV-EVIVGD 135 (212)
T ss_pred CcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCC-Ce-EEEECC
Confidence 445566666666566688899999999999999888763 489999999 57999999999988764 12 244455
Q ss_pred CCcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..... ...+||+|++...+ +.+.+.+.+.|+|+
T Consensus 136 ~~~~~~~~~~fD~I~~~~~~------~~~~~~l~~~Lkpg 169 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAAG------PDIPKPLIEQLKDG 169 (212)
T ss_pred cccCCCcCCCcCEEEECCCc------ccchHHHHHhhCCC
Confidence 43322 23589999986544 23345677788886
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.1e-11 Score=93.05 Aligned_cols=114 Identities=18% Similarity=0.080 Sum_probs=82.6
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l 126 (169)
..+|.+..+.+.+..... ..+.+|||+|||+|.+++.+++. +.+++++|++ +.+++.+++|++.++.. ++ +
T Consensus 68 ~p~~~~~~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~~~~~~~---~ 141 (251)
T TIGR03534 68 IPRPDTEELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDIS--PEALAVARKNAARLGLDNVT---F 141 (251)
T ss_pred cCCCChHHHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCeEE---E
Confidence 345777778777776543 24568999999999999999986 4589999999 56999999999988775 33 3
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCCC--------------------------hHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDASG--------------------------KICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~~--------------------------~~~l~~~l~~~L~p~ 169 (169)
..++........+||+|+++.+.+.... +..+++.+.+.|+|+
T Consensus 142 ~~~d~~~~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~g 210 (251)
T TIGR03534 142 LQSDWFEPLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPG 210 (251)
T ss_pred EECchhccCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccC
Confidence 3344333334568999998766543211 235778888888885
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.9e-11 Score=103.16 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=57.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
+.+|||+|||+|.+++.+++. +++|+++|++ +.+++.+++|++.+++..++. +..++........+||+|+++.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis--~~al~~A~~N~~~~~l~~~v~-~~~~D~~~~~~~~~fDlIvsNPP 215 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDIS--LDAIEVAKSNAIKYEVTDRIQ-IIHSNWFENIEKQKFDFIVSNPP 215 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECC--HHHHHHHHHHHHHcCCcccee-eeecchhhhCcCCCccEEEECCC
Confidence 458999999999999988875 4599999999 569999999999888753322 23334333333458999998765
Q ss_pred CC
Q 030935 149 FY 150 (169)
Q Consensus 149 iy 150 (169)
..
T Consensus 216 Yi 217 (506)
T PRK01544 216 YI 217 (506)
T ss_pred CC
Confidence 43
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.5e-11 Score=90.45 Aligned_cols=105 Identities=14% Similarity=-0.015 Sum_probs=74.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...+..++.......++.+|||+|||+|..+..+++.+.+|+++|.+ +++++.+++|++.+++.. ..+..++....
T Consensus 63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~--~~~~~~a~~~~~~~~~~~--v~~~~~d~~~~ 138 (212)
T PRK00312 63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERI--KTLQWEAKRRLKQLGLHN--VSVRHGDGWKG 138 (212)
T ss_pred cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCC--HHHHHHHHHHHHHCCCCc--eEEEECCcccC
Confidence 34445555555555577899999999999999888887799999999 569999999998877642 12333333222
Q ss_pred CC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. ..+||+|++...+ ..+.+.+.+.|+|+
T Consensus 139 ~~~~~~fD~I~~~~~~------~~~~~~l~~~L~~g 168 (212)
T PRK00312 139 WPAYAPFDRILVTAAA------PEIPRALLEQLKEG 168 (212)
T ss_pred CCcCCCcCEEEEccCc------hhhhHHHHHhcCCC
Confidence 22 2589999986544 33456677888885
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-11 Score=93.21 Aligned_cols=89 Identities=12% Similarity=0.044 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..+..+++. +.+++++|++ +++++.++++.. + ..+... +...+..+.+||+|++..
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS--~~~l~~A~~~~~--~--~~~~~~---d~~~~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEIN--EYAVEKAKAYLP--N--INIIQG---SLFDPFKDNFFDLVLTKG 113 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECC--HHHHHHHHhhCC--C--CcEEEe---eccCCCCCCCEEEEEECC
Confidence 5678999999999999998886 5699999999 569999987642 1 222222 322344456999999999
Q ss_pred cCCCCC--ChHHHHHHHHHhcc
Q 030935 148 VFYDAS--GKICAFEILICSLF 167 (169)
Q Consensus 148 ~iy~~~--~~~~l~~~l~~~L~ 167 (169)
++++.. .+..+++.+.+.++
T Consensus 114 vL~hl~p~~~~~~l~el~r~~~ 135 (204)
T TIGR03587 114 VLIHINPDNLPTAYRELYRCSN 135 (204)
T ss_pred hhhhCCHHHHHHHHHHHHhhcC
Confidence 998763 35666676666553
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-11 Score=96.69 Aligned_cols=110 Identities=16% Similarity=0.014 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA- 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~- 133 (169)
...|+..|.+.....++.+|||.|||||.+.+.++..+++|+++|++ ++|++.++.|++.+++.. +. +..++...
T Consensus 167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~--~~~~~~a~~nl~~~g~~~-i~-~~~~D~~~l 242 (329)
T TIGR01177 167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDID--WKMVAGARINLEHYGIED-FF-VKRGDATKL 242 (329)
T ss_pred CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCC--HHHHHHHHHHHHHhCCCC-Ce-EEecchhcC
Confidence 34566666655445578899999999999999999999999999999 569999999999888764 22 22333322
Q ss_pred CCCCCCCcEEEEcCcCCCC----------CChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDA----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~----------~~~~~l~~~l~~~L~p~ 169 (169)
+....+||+|++.. .|.. ..+..+++.+.+.|+|+
T Consensus 243 ~~~~~~~D~Iv~dP-Pyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~g 287 (329)
T TIGR01177 243 PLSSESVDAIATDP-PYGRSTTAAGDGLESLYERSLEEFHEVLKSE 287 (329)
T ss_pred CcccCCCCEEEECC-CCcCcccccCCchHHHHHHHHHHHHHHccCC
Confidence 23346899999854 4422 12578899999999985
|
This family is found exclusively in the Archaea. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.4e-11 Score=93.87 Aligned_cols=94 Identities=21% Similarity=0.218 Sum_probs=67.9
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEE
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLT 127 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~ 127 (169)
..|.+..+.+.+.......++.+|||+|||+|.+++.+++.. .+|+++|++ +.+++.+++|++.. ...+.+...+
T Consensus 89 pr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis--~~~l~~a~~n~~~~~~~~i~~~~~d 166 (275)
T PRK09328 89 PRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDIS--PEALAVARRNAKHGLGARVEFLQGD 166 (275)
T ss_pred CCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhCCCCcEEEEEcc
Confidence 356677888888755444567799999999999999999875 589999999 56999999999822 2233333333
Q ss_pred cCCCCcCCCCCCCcEEEEcCcC
Q 030935 128 WGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 128 ~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+ .......+||+|+++.+.
T Consensus 167 ~---~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 167 W---FEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred c---cCcCCCCceeEEEECCCc
Confidence 3 233334689999986554
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=92.82 Aligned_cols=94 Identities=10% Similarity=-0.033 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~----g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDl 142 (169)
.++.+|||||||+|.++..+++. | .+|+++|++ ++|++.++++...+++.. ...+.+... ..+.+||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~--~~~~~~~l~--~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPD--PRAVAFARANPRRPGVTF--RQAVSDELV--AEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCC--HHHHHHHHhccccCCCeE--EEEeccccc--ccCCCccE
Confidence 35679999999999998887752 3 389999999 569999988876555443 223323221 23468999
Q ss_pred EEEcCcCCCCCC--hHHHHHHHHHhccC
Q 030935 143 ILGADVFYDASG--KICAFEILICSLFP 168 (169)
Q Consensus 143 Ii~sd~iy~~~~--~~~l~~~l~~~L~p 168 (169)
|+++.++++..+ ...+++.+.+.++.
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~~ 160 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALARR 160 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcCe
Confidence 999999998876 35688888877753
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-11 Score=93.40 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|..+..+++. +.+|+++|++ +.|++.++++++..+...++. +..++.... ....+|+|++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s--~~ml~~a~~~~~~~~~~~~v~-~~~~d~~~~-~~~~~d~v~~ 128 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS--QPMVERCRQHIAAYHSEIPVE-ILCNDIRHV-EIKNASMVIL 128 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCC--HHHHHHHHHHHHhcCCCCCeE-EEECChhhC-CCCCCCEEee
Confidence 5679999999999999988874 4589999999 569999999987654332221 223343222 1236899999
Q ss_pred cCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+.++++.. +...+++.+.+.|+|+
T Consensus 129 ~~~l~~~~~~~~~~~l~~i~~~Lkpg 154 (239)
T TIGR00740 129 NFTLQFLPPEDRIALLTKIYEGLNPN 154 (239)
T ss_pred ecchhhCCHHHHHHHHHHHHHhcCCC
Confidence 99988764 4578999999999996
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=102.78 Aligned_cols=100 Identities=22% Similarity=0.092 Sum_probs=72.4
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
...++++|||||||+|..+..+++.+.+|+++|++ +.+++.++.... ...++.+...+......+..+.+||+|+++
T Consensus 34 ~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s--~~~l~~a~~~~~-~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~ 110 (475)
T PLN02336 34 PPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFI--ESVIKKNESING-HYKNVKFMCADVTSPDLNISDGSVDLIFSN 110 (475)
T ss_pred CccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCC--HHHHHHHHHHhc-cCCceEEEEecccccccCCCCCCEEEEehh
Confidence 33456799999999999999999998899999999 468876544211 111233333333221223345689999999
Q ss_pred CcCCCCCC--hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
.++++..+ +..+++.+++.|+|+
T Consensus 111 ~~l~~l~~~~~~~~l~~~~r~Lk~g 135 (475)
T PLN02336 111 WLLMYLSDKEVENLAERMVKWLKVG 135 (475)
T ss_pred hhHHhCCHHHHHHHHHHHHHhcCCC
Confidence 99998765 678999999999986
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=100.12 Aligned_cols=103 Identities=19% Similarity=0.190 Sum_probs=74.0
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLN 139 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~ 139 (169)
+.++...++++.|||+|||||++++++|+.|| +|+++|.++ +++.+++.+..|++...+. ...|..++-.. .++
T Consensus 52 i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~---ia~~a~~iv~~N~~~~ii~-vi~gkvEdi~LP~eK 127 (346)
T KOG1499|consen 52 ILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS---IADFARKIVKDNGLEDVIT-VIKGKVEDIELPVEK 127 (346)
T ss_pred HhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH---HHHHHHHHHHhcCccceEE-EeecceEEEecCccc
Confidence 55677789999999999999999999999999 799999984 8899999999999875433 44454433223 479
Q ss_pred CcEEEEcC---cCCCCCChHHHHHHHHHhccC
Q 030935 140 PNIILGAD---VFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 140 fDlIi~sd---~iy~~~~~~~l~~~l~~~L~p 168 (169)
.|+|++-= ++++...++..+-.=-+.|+|
T Consensus 128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~ 159 (346)
T KOG1499|consen 128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKE 159 (346)
T ss_pred eeEEeehhhhHHHHHhhhhhhhhhhhhhccCC
Confidence 99999632 333444444444333334444
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=92.79 Aligned_cols=93 Identities=16% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++....+.. +.+.. ++.. ....+||+|++.
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s--~~~i~~a~~~~~~~~~~~~i~~~~---~d~~--~~~~~fD~v~~~ 134 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDIS--PQMVEEARERAPEAGLAGNITFEV---GDLE--SLLGRFDTVVCL 134 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCccCcEEEE---cCch--hccCCcCEEEEc
Confidence 457799999999999999999988899999999 56999999998776652 33322 2221 224589999999
Q ss_pred CcCCCC--CChHHHHHHHHHhccC
Q 030935 147 DVFYDA--SGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~--~~~~~l~~~l~~~L~p 168 (169)
+++++. .....+++.+.+.+++
T Consensus 135 ~~l~~~~~~~~~~~l~~l~~~~~~ 158 (230)
T PRK07580 135 DVLIHYPQEDAARMLAHLASLTRG 158 (230)
T ss_pred chhhcCCHHHHHHHHHHHHhhcCC
Confidence 998653 3456677777665543
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.3e-11 Score=90.62 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=69.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CC-CCCCCcE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SI-FDLNPNI 142 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~-~~~~fDl 142 (169)
..++.+||||+||+|.+|+.++++|+ +|+++|.+ +.+++.+++|++.+++..++. +..++... .. ...+++.
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~--~~a~~~~~~N~~~~~~~~~~~-~~~~D~~~~l~~~~~~~~~~d 123 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDD--RKANQTLKENLALLKSGEQAE-VVRNSALRALKFLAKKPTFDN 123 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHhCCcccEE-EEehhHHHHHHHhhccCCCce
Confidence 45789999999999999999999998 89999999 569999999999998753322 22333211 11 1223444
Q ss_pred EEEcCcCCCCCChHHHHHHHHH
Q 030935 143 ILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~ 164 (169)
||..|+.|.....+.+++.+.+
T Consensus 124 vv~~DPPy~~~~~~~~l~~l~~ 145 (189)
T TIGR00095 124 VIYLDPPFFNGALQALLELCEN 145 (189)
T ss_pred EEEECcCCCCCcHHHHHHHHHH
Confidence 4556999988788888887755
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=92.49 Aligned_cols=98 Identities=14% Similarity=-0.091 Sum_probs=71.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEc-CCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW-GFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~-~~~~~~~~~~~fDlIi~ 145 (169)
.+.+|||+|||+|..+..+++.. .+|+++|++ +.+++.++++++.++.. +.+...++ ........+..||+|++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s--~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~ 117 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVH--EPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL 117 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEec--hHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence 46799999999999999988763 489999999 46999999999888763 33333333 21111133458999998
Q ss_pred cCcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
.-+..+.. ..+.+++.+.+.|+|+
T Consensus 118 ~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lkpg 149 (202)
T PRK00121 118 NFPDPWPKKRHHKRRLVQPEFLALYARKLKPG 149 (202)
T ss_pred ECCCCCCCccccccccCCHHHHHHHHHHcCCC
Confidence 64432211 2578999999999996
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=97.13 Aligned_cols=94 Identities=16% Similarity=0.060 Sum_probs=73.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||||||+|.+++.+++. +.+|+++|.+ +.|++.++++...+++ ++...+..+ .+..+.+||+|+++.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S--~~mL~~A~~k~~~~~i--~~i~gD~e~--lp~~~~sFDvVIs~~ 186 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQS--PHQLAKAKQKEPLKEC--KIIEGDAED--LPFPTDYADRYVSAG 186 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHhhhccCC--eEEeccHHh--CCCCCCceeEEEEcC
Confidence 4679999999999999888774 3589999999 5699999988654433 232222221 123345899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+.+.+++.+.+.|+|+
T Consensus 187 ~L~~~~d~~~~L~e~~rvLkPG 208 (340)
T PLN02490 187 SIEYWPDPQRGIKEAYRVLKIG 208 (340)
T ss_pred hhhhCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999996
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-11 Score=105.15 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=74.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..++.+|||+|||+|..+..+++. +.+|+++|++ +.|++.++++...++.+..+...+..+....+.+.+||+|++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS--~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDIS--ENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEE
Confidence 346789999999999998888774 4599999999 569999999877665544433333322211234568999999
Q ss_pred cCcCCCC-------------CChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA-------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~-------------~~~~~l~~~l~~~L~p~ 169 (169)
+.++++. .....+++.+.+.|+||
T Consensus 494 n~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 494 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred chHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCC
Confidence 8877642 35688999999999996
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=88.00 Aligned_cols=99 Identities=14% Similarity=0.061 Sum_probs=72.9
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCC
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLN 139 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~ 139 (169)
.....++.+|||+|||+|.+++.+++. + .+|+++|++ +++++.+++|++.+++..++. +..++..+. ....+
T Consensus 35 ~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~--~~~~~~a~~n~~~~g~~~~v~-~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 35 KLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKD--EKAINLTRRNAEKFGVLNNIV-LIKGEAPEILFTINEK 111 (198)
T ss_pred HcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHhCCCCCeE-EEEechhhhHhhcCCC
Confidence 345567889999999999999998874 3 489999999 569999999999887432222 222333221 12358
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||.|++.- ....+..+++.+.+.|+|+
T Consensus 112 ~D~V~~~~---~~~~~~~~l~~~~~~Lkpg 138 (198)
T PRK00377 112 FDRIFIGG---GSEKLKEIISASWEIIKKG 138 (198)
T ss_pred CCEEEECC---CcccHHHHHHHHHHHcCCC
Confidence 99999843 3456788999999999985
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-11 Score=92.39 Aligned_cols=139 Identities=17% Similarity=0.080 Sum_probs=94.1
Q ss_pred CcceEEEEEeccCCCCCceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEE
Q 030935 17 HMTTVSQHYFVDESDKPSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVT 96 (169)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~ 96 (169)
.|..+.|+.|..+.- +-.-..++.-..|.-.|=++..+...|.+.....++.+|||+|||+|..+..+|+...+|+
T Consensus 23 A~~~vPRe~FVp~~~----~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~ 98 (209)
T COG2518 23 AFLAVPRELFVPAAY----KHLAYEDRALPIGCGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVV 98 (209)
T ss_pred HHHhCCHHhccCchh----hcccccCCcccCCCCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEE
Confidence 355666777754221 1111112212233334445666666677766777899999999999999999999988999
Q ss_pred EEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 97 LTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 97 ~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+|.. +++.+.|++|++..+... ....+++-.....+ .+||.|+.+-.. +.+-+.|.+.|+||
T Consensus 99 siEr~--~~L~~~A~~~L~~lg~~n--V~v~~gDG~~G~~~~aPyD~I~Vtaaa------~~vP~~Ll~QL~~g 162 (209)
T COG2518 99 SIERI--EELAEQARRNLETLGYEN--VTVRHGDGSKGWPEEAPYDRIIVTAAA------PEVPEALLDQLKPG 162 (209)
T ss_pred EEEEc--HHHHHHHHHHHHHcCCCc--eEEEECCcccCCCCCCCcCEEEEeecc------CCCCHHHHHhcccC
Confidence 99999 569999999999988853 33566766555554 499999975443 33335566666664
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-11 Score=99.68 Aligned_cols=97 Identities=20% Similarity=0.016 Sum_probs=70.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-----CCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-----FDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-----~~~~fDlI 143 (169)
++++|||+|||||.+++.++..|+ +|+++|++ +.+++.+++|++.|++......+..++..... ...+||+|
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s--~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTS--QEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 678999999999999998887777 89999999 56999999999999985211223344433211 13489999
Q ss_pred EEcCcCCCCCC----------hHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASG----------KICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~----------~~~l~~~l~~~L~p~ 169 (169)
++ |+.|.... +..+++...+.|+|+
T Consensus 298 il-DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~g 332 (396)
T PRK15128 298 VM-DPPKFVENKSQLMGACRGYKDINMLAIQLLNPG 332 (396)
T ss_pred EE-CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 97 54454433 455566667888875
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-12 Score=100.53 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=75.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...|++.|.... .-.=+++||||||||+.|..+-.+..+.+++|+|+ .|++.+.+. ++-.....-+...+...
T Consensus 111 P~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~--nMl~kA~eK----g~YD~L~~Aea~~Fl~~ 183 (287)
T COG4976 111 PELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISE--NMLAKAHEK----GLYDTLYVAEAVLFLED 183 (287)
T ss_pred HHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCCchhH--HHHHHHHhc----cchHHHHHHHHHHHhhh
Confidence 344555444332 11236899999999999999988888999999995 498877653 22111000000111122
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|.++||+-+...++.++.....+|+|+
T Consensus 184 ~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~g 218 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPG 218 (287)
T ss_pred ccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCC
Confidence 33569999999999999999999999999999986
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.5e-10 Score=87.27 Aligned_cols=96 Identities=23% Similarity=0.157 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.++.+|||+|||+|..+..+++.+. +++++|++ +.+++.++++.. ....+.+...+..+. ...+.+||+|++
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~--~~~~~~~~~~~~-~~~~i~~~~~d~~~~--~~~~~~~D~i~~ 112 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFS--SEMLEVAKKKSE-LPLNIEFIQADAEAL--PFEDNSFDAVTI 112 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECC--HHHHHHHHHHhc-cCCCceEEecchhcC--CCCCCcEEEEEE
Confidence 3678999999999999998887654 89999999 569999888775 222233333322221 223458999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+++..+...+++.+.+.|+|+
T Consensus 113 ~~~~~~~~~~~~~l~~~~~~L~~g 136 (223)
T TIGR01934 113 AFGLRNVTDIQKALREMYRVLKPG 136 (223)
T ss_pred eeeeCCcccHHHHHHHHHHHcCCC
Confidence 999999999999999999999996
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=97.97 Aligned_cols=105 Identities=12% Similarity=-0.033 Sum_probs=76.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
+..|.+.+.+.....++.+|||+|||+|.+++.+++.+++|+++|++ +++++.+++|++.+++. +++...++.+...
T Consensus 282 ~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s--~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~ 359 (443)
T PRK13168 282 NQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGV--EAMVERARENARRNGLDNVTFYHANLEEDFT 359 (443)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEEeChHHhhh
Confidence 56677777765555567899999999999999999998899999999 56999999999998874 4444444332211
Q ss_pred C--CCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 S--IFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
. ..+.+||+|++ |+-|.- ....++.+.+
T Consensus 360 ~~~~~~~~fD~Vi~-dPPr~g--~~~~~~~l~~ 389 (443)
T PRK13168 360 DQPWALGGFDKVLL-DPPRAG--AAEVMQALAK 389 (443)
T ss_pred hhhhhcCCCCEEEE-CcCCcC--hHHHHHHHHh
Confidence 1 22347999997 666653 3455566655
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-11 Score=105.29 Aligned_cols=98 Identities=20% Similarity=0.074 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDlIi~s 146 (169)
+|++|||||||||.+|+.+++.|+ +|+++|++ +.+++.+++|++.|+++..-..+..++..+.. ...+||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s--~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMS--NTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 578999999999999999999888 69999999 56999999999999885211223333322211 14589999985
Q ss_pred CcCCCC-----------CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA-----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~-----------~~~~~l~~~l~~~L~p~ 169 (169)
.+-+.. ..+..+++.+.+.|+|+
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~g 649 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPG 649 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCC
Confidence 444321 13567888888889886
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=91.03 Aligned_cols=106 Identities=8% Similarity=-0.003 Sum_probs=78.3
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
++.+.+.....++.+|||+|||+|.+++.+++.. .+++++|. +.+++.+++|++..++..++. ...++......
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~---~~~~~~a~~~~~~~gl~~rv~-~~~~d~~~~~~ 213 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL---PGAIDLVNENAAEKGVADRMR-GIAVDIYKESY 213 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec---HHHHHHHHHHHHhCCccceEE-EEecCccCCCC
Confidence 3444444444466799999999999999999875 48999997 359999999999888764433 33344432222
Q ss_pred CCCCcEEEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
+ .+|+|+.+.++|+... ...+++.+.++|+||
T Consensus 214 ~-~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pg 247 (306)
T TIGR02716 214 P-EADAVLFCRILYSANEQLSTIMCKKAFDAMRSG 247 (306)
T ss_pred C-CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCC
Confidence 2 4799999999986543 467999999999996
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=87.25 Aligned_cols=91 Identities=8% Similarity=-0.054 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|.++..+++. +..++++|++ +++++.++. +++ ++...+..+...+..+.+||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s--~~~i~~a~~----~~~--~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEID--QDGVLACVA----RGV--NVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCC--HHHHHHHHH----cCC--eEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 5679999999999999888764 4589999999 468877654 233 333333322111233468999999999
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
+++..+...+++.+.+.+++
T Consensus 85 l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred hHcCcCHHHHHHHHHHhCCe
Confidence 99999999999998887765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=92.60 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEc---CCCCcCC--CCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTW---GFLDASI--FDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~---~~~~~~~--~~~~fD 141 (169)
++.++||||||+|.+...++.. +.+++++|++ +.+++.|++|++.| ++..++..... .+..... ...+||
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId--~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD 191 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDID--PQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFD 191 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCC--HHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence 4568999999999877766654 5699999999 56999999999999 77654432221 2222221 235899
Q ss_pred EEEEcCcCCCCCC
Q 030935 142 IILGADVFYDASG 154 (169)
Q Consensus 142 lIi~sd~iy~~~~ 154 (169)
+|+|+.++|....
T Consensus 192 livcNPPf~~s~~ 204 (321)
T PRK11727 192 ATLCNPPFHASAA 204 (321)
T ss_pred EEEeCCCCcCcch
Confidence 9999999886543
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.18 E-value=6e-11 Score=89.36 Aligned_cols=96 Identities=22% Similarity=0.195 Sum_probs=68.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC--CcCC--CCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASI--FDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~--~~~~--~~~~fDlI 143 (169)
++|.++|||.||||.+|+.++.+|| +|+++|.+ +..+..+++|++.-+...++..+..+.. .... ...+||+|
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~--~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiI 118 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKN--RKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDII 118 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECC--HHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEE
Confidence 6899999999999999999999998 89999999 5699999999998887654443433321 1111 34699999
Q ss_pred EEcCcCCCCCCh-HHHHHHHH--Hhcc
Q 030935 144 LGADVFYDASGK-ICAFEILI--CSLF 167 (169)
Q Consensus 144 i~sd~iy~~~~~-~~l~~~l~--~~L~ 167 (169)
+. |+-|..... +.+++.|. ..|+
T Consensus 119 fl-DPPY~~~~~~~~~l~~l~~~~~l~ 144 (183)
T PF03602_consen 119 FL-DPPYAKGLYYEELLELLAENNLLN 144 (183)
T ss_dssp EE---STTSCHHHHHHHHHHHHTTSEE
T ss_pred EE-CCCcccchHHHHHHHHHHHCCCCC
Confidence 96 899988874 88888887 4444
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.1e-09 Score=83.11 Aligned_cols=107 Identities=16% Similarity=0.095 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
...+...+.......++.+|||+|||+|.+++.+++. +.+|+++|.+ +++++.+++|++.++.. ++. ...++..
T Consensus 25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s--~~~~~~a~~n~~~~~~~-~v~-~~~~d~~ 100 (196)
T PRK07402 25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERD--EEVVNLIRRNCDRFGVK-NVE-VIEGSAP 100 (196)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCC-CeE-EEECchH
Confidence 3334444444444457789999999999999998875 3589999999 57999999999988764 222 2223221
Q ss_pred cC--CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 133 AS--IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. .....+|.|+.. ....++.+++.+.+.|+|+
T Consensus 101 ~~~~~~~~~~d~v~~~----~~~~~~~~l~~~~~~Lkpg 135 (196)
T PRK07402 101 ECLAQLAPAPDRVCIE----GGRPIKEILQAVWQYLKPG 135 (196)
T ss_pred HHHhhCCCCCCEEEEE----CCcCHHHHHHHHHHhcCCC
Confidence 11 112245666542 2345789999999999996
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=92.50 Aligned_cols=101 Identities=18% Similarity=0.266 Sum_probs=77.3
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCc
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPN 141 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fD 141 (169)
.++...++++.|||+|||+|+++.++++.|+ +|.+++.++ |.+.++.-++.|++..++. ..-|..++-..+++.|
T Consensus 170 l~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~---MAqyA~~Lv~~N~~~~rIt-VI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 170 LENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE---MAQYARKLVASNNLADRIT-VIPGKIEDIELPEKVD 245 (517)
T ss_pred HhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH---HHHHHHHHHhcCCccceEE-EccCccccccCchhcc
Confidence 3455678999999999999999999999998 799999984 9999999999998765543 5567666655678999
Q ss_pred EEEEcCc---CCCCCChHHHHHHHHHhccC
Q 030935 142 IILGADV---FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 142 lIi~sd~---iy~~~~~~~l~~~l~~~L~p 168 (169)
+||+-.. +|+...++.-+-. .+.|+|
T Consensus 246 viISEPMG~mL~NERMLEsYl~A-rk~l~P 274 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHA-RKWLKP 274 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHH-HhhcCC
Confidence 9998664 4455555553322 266666
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.4e-10 Score=85.78 Aligned_cols=113 Identities=14% Similarity=0.029 Sum_probs=72.6
Q ss_pred cceeecch------HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 47 YGLFVWPC------SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 47 ~g~~~W~~------~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.+.++|.. +.+|+.+ +.....++.+|||+|||+|..++.+++.. .+|+++|++ +.|++.++++++..
T Consensus 45 ~~~~~~~~~r~~~~~~ll~~~--~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~--~~ml~~l~~~a~~~- 119 (226)
T PRK04266 45 VEYREWNPRRSKLAAAILKGL--KNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFA--PRPMRELLEVAEER- 119 (226)
T ss_pred cEEEEECCCccchHHHHHhhH--hhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECC--HHHHHHHHHHhhhc-
Confidence 34566654 4444444 23445578899999999999999999863 489999999 56998877776543
Q ss_pred CcceEEEEEcCCCCcC----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 119 LNCRVMGLTWGFLDAS----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 119 ~~~~~~~l~~~~~~~~----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++.+. .++...+ ....+||+|++. .- ++.....+++.+.+.||||
T Consensus 120 ~nv~~i---~~D~~~~~~~~~l~~~~D~i~~d-~~-~p~~~~~~L~~~~r~LKpG 169 (226)
T PRK04266 120 KNIIPI---LADARKPERYAHVVEKVDVIYQD-VA-QPNQAEIAIDNAEFFLKDG 169 (226)
T ss_pred CCcEEE---ECCCCCcchhhhccccCCEEEEC-CC-ChhHHHHHHHHHHHhcCCC
Confidence 122222 2222211 113469999853 21 1222345689999999996
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.6e-10 Score=87.88 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=72.5
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.|...=|.+ +|+++... ...+.+|||+|||+|.+++.+++. ..+|+++|++ +.+++.+++|... .
T Consensus 30 ~GqFfTP~~--iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID--~~Al~~Ar~n~~~----~ 99 (241)
T PHA03412 30 LGAFFTPIG--LARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELN--HTYYKLGKRIVPE----A 99 (241)
T ss_pred CCccCCCHH--HHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECC--HHHHHHHHhhccC----C
Confidence 344444444 44444322 124679999999999999988874 3489999999 5699999988631 2
Q ss_pred eEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCC------------hHHHHHHHHHhccCC
Q 030935 122 RVMGLTWGFLDASIFDLNPNIILGADVFYDASG------------KICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~------------~~~l~~~l~~~L~p~ 169 (169)
. +.+++......+.+||+||++.+.+.... ...+++...++++||
T Consensus 100 ~---~~~~D~~~~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G 156 (241)
T PHA03412 100 T---WINADALTTEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQG 156 (241)
T ss_pred E---EEEcchhcccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCC
Confidence 2 33344433223458999999988873321 344677777777664
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.6e-10 Score=86.92 Aligned_cols=94 Identities=16% Similarity=0.079 Sum_probs=73.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
+...-.+|.|||||+|..+..++++ ++.++++|.| ++|++.|+.. ..++++.. ++...-..+.+.|+++
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS--~~Mla~Aa~r----lp~~~f~~---aDl~~w~p~~~~dllf 97 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSS--PAMLAKAAQR----LPDATFEE---ADLRTWKPEQPTDLLF 97 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCC--HHHHHHHHHh----CCCCceec---ccHhhcCCCCccchhh
Confidence 3445568999999999999999987 5699999999 6799988553 33444332 2322222334899999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++-++++..+...++..|...|+||
T Consensus 98 aNAvlqWlpdH~~ll~rL~~~L~Pg 122 (257)
T COG4106 98 ANAVLQWLPDHPELLPRLVSQLAPG 122 (257)
T ss_pred hhhhhhhccccHHHHHHHHHhhCCC
Confidence 9999999999999999999999997
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-09 Score=92.32 Aligned_cols=100 Identities=14% Similarity=-0.057 Sum_probs=70.7
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..+|.+|||+|||+|..++.+++.+ .+|+++|++ +.+++.+++|++.+++.+.+...+...........+||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s--~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDID--AQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEE
Confidence 3468899999999999999998865 489999999 569999999999988765433322222111112357999996
Q ss_pred cCcCCCC------------C----------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA------------S----------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~------------~----------~~~~l~~~l~~~L~p~ 169 (169)
.-+.... . ....+++...+.|+||
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpG 365 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPG 365 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4433211 0 1246888888999986
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=90.82 Aligned_cols=89 Identities=15% Similarity=-0.006 Sum_probs=64.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
.++.+|||+|||+|.+++.+++.+++|+++|++ +.+++.+++|++.+++. +++. .++..... ...+||+|+.
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s--~~av~~A~~n~~~~~l~~v~~~---~~D~~~~~~~~~~~~D~Vv~ 246 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEIS--AEAIACAKQSAAELGLTNVQFQ---ALDSTQFATAQGEVPDLVLV 246 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEE---EcCHHHHHHhcCCCCeEEEE
Confidence 356899999999999999999999999999999 56999999999999874 3333 34432211 2247999998
Q ss_pred cCcCCCCCChHHHHHHHHH
Q 030935 146 ADVFYDASGKICAFEILIC 164 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~ 164 (169)
..+ +. .....+.+.|..
T Consensus 247 dPP-r~-G~~~~~~~~l~~ 263 (315)
T PRK03522 247 NPP-RR-GIGKELCDYLSQ 263 (315)
T ss_pred CCC-CC-CccHHHHHHHHH
Confidence 544 32 334455555543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-10 Score=85.03 Aligned_cols=110 Identities=16% Similarity=-0.033 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce-----------
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR----------- 122 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~----------- 122 (169)
....|.+++.... ..++.+|||+|||.|.-++.+|.+|.+|+++|++ +.+++.+.. .+++...
T Consensus 19 p~~~l~~~~~~l~-~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S--~~Ai~~~~~---~~~~~~~~~~~~~~~~~~ 92 (213)
T TIGR03840 19 VNPLLVKHWPALG-LPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELS--EIAVEQFFA---ENGLTPTVTQQGEFTRYR 92 (213)
T ss_pred CCHHHHHHHHhhC-CCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCC--HHHHHHHHH---HcCCCcceeccccceeee
Confidence 3556666765532 1256799999999999999999999999999999 458886532 1222100
Q ss_pred --EEEEEcCCCCcCCC--CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 123 --VMGLTWGFLDASIF--DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 123 --~~~l~~~~~~~~~~--~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
-..+..++...... ..+||.|+-.-++.+. +..+..++.++++|+|+
T Consensus 93 ~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg 145 (213)
T TIGR03840 93 AGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG 145 (213)
T ss_pred cCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC
Confidence 01233344432211 2479999977665533 34466899999999996
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-09 Score=80.77 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=74.6
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCc
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPN 141 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fD 141 (169)
.....+|.+++|+|||||.+++.++..+. +|+++|.+ +++++.+++|++..+.+. +. +.-++..+.+.+. +||
T Consensus 29 ~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~--~~a~~~~~~N~~~fg~~n-~~-vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 29 KLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERD--EEALELIERNAARFGVDN-LE-VVEGDAPEALPDLPSPD 104 (187)
T ss_pred hhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecC--HHHHHHHHHHHHHhCCCc-EE-EEeccchHhhcCCCCCC
Confidence 34456888999999999999999997654 89999999 569999999999998652 22 3334433333333 689
Q ss_pred EEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 142 IILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.|+-.-- ..++.+++++.+.|+|+
T Consensus 105 aiFIGGg----~~i~~ile~~~~~l~~g 128 (187)
T COG2242 105 AIFIGGG----GNIEEILEAAWERLKPG 128 (187)
T ss_pred EEEECCC----CCHHHHHHHHHHHcCcC
Confidence 8886554 67999999999999986
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.9e-10 Score=91.86 Aligned_cols=92 Identities=14% Similarity=0.010 Sum_probs=67.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
..+.+|||||||+|.+++.++..+.+|+++|++ +.+++.+++|++.|++. ++ +..++..... ...+||+|+.
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~--~~av~~a~~N~~~~~~~~~~---~~~~d~~~~~~~~~~~~D~vi~ 306 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIE--SEAIACAQQSAQMLGLDNLS---FAALDSAKFATAQMSAPELVLV 306 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECC--HHHHHHHHHHHHHcCCCcEE---EEECCHHHHHHhcCCCCCEEEE
Confidence 356799999999999999999988899999999 56999999999999874 33 3334432211 1236999997
Q ss_pred cCcCCCCCChHHHHHHHHHhccC
Q 030935 146 ADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
|+-|. ...+.+++.|.+ ++|
T Consensus 307 -DPPr~-G~~~~~l~~l~~-~~p 326 (374)
T TIGR02085 307 -NPPRR-GIGKELCDYLSQ-MAP 326 (374)
T ss_pred -CCCCC-CCcHHHHHHHHh-cCC
Confidence 56564 555666676654 454
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.5e-10 Score=87.93 Aligned_cols=98 Identities=14% Similarity=0.060 Sum_probs=67.0
Q ss_pred CCCeEEEECCCCCH----HHHHHHHh-------CCeEEEEcCCCcHHHHHHHHHHHH----HhCCc--------------
Q 030935 70 SGANVVELGAGTSL----PGLVAAKV-------GSNVTLTDDSNRIEVLKNMRRVCE----MNKLN-------------- 120 (169)
Q Consensus 70 ~~~~vLElGcGtGl----~~l~~a~~-------ga~V~~~D~~~~~~~l~~~~~n~~----~n~~~-------------- 120 (169)
++.+|||+|||||- +++.+++. +.+|+++|++ +.|++.|++.+. ..+++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis--~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~ 176 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDID--LKALEKARAGIYPERELEDLPKALLARYFSRVEDK 176 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECC--HHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence 45699999999996 45555553 2489999999 569999988641 11110
Q ss_pred ------c-eEEEEEcCCCCcCC-CCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 121 ------C-RVMGLTWGFLDASI-FDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 121 ------~-~~~~l~~~~~~~~~-~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
. ....+...+..... ...+||+|+|..++++.. ....+++.+++.|+||
T Consensus 177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pG 235 (264)
T smart00138 177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPG 235 (264)
T ss_pred EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCC
Confidence 0 01123334443322 346899999999887664 4568999999999996
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-11 Score=94.94 Aligned_cols=110 Identities=29% Similarity=0.465 Sum_probs=76.6
Q ss_pred CcceeecchHHHHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHH-----HHHHHHHH
Q 030935 46 EYGLFVWPCSVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-----NMRRVCEM 116 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~-----~~~~n~~~ 116 (169)
.+|+++|.++..|..++.+. .-.+.+++|||||||+|++++.+.+.|+ .|.+.|++. +.++ ++..|...
T Consensus 89 EGg~k~wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na--~vl~~~t~pn~~~~~~~ 166 (282)
T KOG2920|consen 89 EGGLKLWECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNA--EVLRLVTLPNILVNSHA 166 (282)
T ss_pred ecceEEeecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecch--hheeeecccceecchhh
Confidence 68999999999999999865 3346899999999999999999999995 899999994 4552 11111111
Q ss_pred h------CCcceEEEE---EcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHH
Q 030935 117 N------KLNCRVMGL---TWGFLDASIFDLNPNIILGADVFYDASGKICAF 159 (169)
Q Consensus 117 n------~~~~~~~~l---~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~ 159 (169)
. .....+..- +|-... ....+||+|+++..+|.....+.+.
T Consensus 167 ~~~~~e~~~~~~i~~s~l~dg~~~~--t~~~~ydlIlsSetiy~~~~~~~~~ 216 (282)
T KOG2920|consen 167 GVEEKENHKVDEILNSLLSDGVFNH--TERTHYDLILSSETIYSIDSLAVLY 216 (282)
T ss_pred hhhhhhcccceeccccccccchhhh--ccccchhhhhhhhhhhCcchhhhhH
Confidence 1 000011111 331110 0113899999999999999998884
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.3e-10 Score=101.62 Aligned_cols=95 Identities=20% Similarity=0.073 Sum_probs=69.0
Q ss_pred chHHHHHHHHHhccC-CCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc---------
Q 030935 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN--------- 120 (169)
Q Consensus 53 ~~~~~La~~l~~~~~-~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~--------- 120 (169)
|.+..|++.+...+. .+++++|||||||+|.+++.+++.. ++|+++|++ +++++.+++|++.|+++
T Consensus 100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis--~~Al~~A~~Na~~n~l~~~~~~~~~~ 177 (1082)
T PLN02672 100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDIN--PRAVKVAWINLYLNALDDDGLPVYDG 177 (1082)
T ss_pred hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCccccccccccc
Confidence 567888888544432 2457799999999999999999864 489999999 57999999999988642
Q ss_pred -----ceEEEEEcCCCCcCCCC--CCCcEEEEcCcC
Q 030935 121 -----CRVMGLTWGFLDASIFD--LNPNIILGADVF 149 (169)
Q Consensus 121 -----~~~~~l~~~~~~~~~~~--~~fDlIi~sd~i 149 (169)
.....+..++....... .+||+||++.+.
T Consensus 178 ~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPY 213 (1082)
T PLN02672 178 EGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQ 213 (1082)
T ss_pred ccccccccEEEEECchhhhccccCCceEEEEECCCc
Confidence 01123445555443322 269999997764
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.5e-10 Score=84.32 Aligned_cols=98 Identities=11% Similarity=-0.122 Sum_probs=68.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcC-CCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDAS-IFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~-~~~~~fDlIi~ 145 (169)
...++||||||+|.+++.+++.. .+|+++|++ +++++.+++++..+++. +++...+..+.... ..+..+|.|+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~--~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~ 93 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIH--TPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFL 93 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEee--HHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEE
Confidence 45689999999999999998874 489999999 56999999999887764 33322222211111 22347999987
Q ss_pred cCcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
+-+.-+.. ..+.+++.+++.|+|+
T Consensus 94 ~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lkpg 125 (194)
T TIGR00091 94 NFPDPWPKKRHNKRRITQPHFLKEYANVLKKG 125 (194)
T ss_pred ECCCcCCCCCccccccCCHHHHHHHHHHhCCC
Confidence 63322221 1368999999999996
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.1e-10 Score=86.58 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=74.8
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
++|+.......+.++|||+|||+|..++.+++. +.+|+.+|++ +++++.+++|++.+++..++ .+..++..+.+
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d--~~~~~~A~~n~~~~gl~~~i-~~~~gda~~~L 133 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDID--KEAYEVGLEFIKKAGVDHKI-NFIQSDALSAL 133 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcE-EEEEccHHHHH
Confidence 334333333346789999999999988887763 2499999999 56999999999999986433 24444432211
Q ss_pred -------CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 -------FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 -------~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+||+|+. |.- ...+..+++.+.+.|+||
T Consensus 134 ~~l~~~~~~~~fD~Vfi-Da~--k~~y~~~~~~~~~ll~~G 171 (234)
T PLN02781 134 DQLLNNDPKPEFDFAFV-DAD--KPNYVHFHEQLLKLVKVG 171 (234)
T ss_pred HHHHhCCCCCCCCEEEE-CCC--HHHHHHHHHHHHHhcCCC
Confidence 1358999986 432 356778889999999986
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=86.21 Aligned_cols=97 Identities=18% Similarity=0.081 Sum_probs=70.6
Q ss_pred CCCeEEEECCCCC-HHHHHHHH-h--CCeEEEEcCCCcHHHHHHHHHHHHH-hCCcceEEEEEcCCCCcCC-CCCCCcEE
Q 030935 70 SGANVVELGAGTS-LPGLVAAK-V--GSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDASI-FDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtG-l~~l~~a~-~--ga~V~~~D~~~~~~~l~~~~~n~~~-n~~~~~~~~l~~~~~~~~~-~~~~fDlI 143 (169)
.+++|+|+|||.| +.++.+++ . +.+++++|++ +++++.|++++.. .++..++. +..++..... ...+||+|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d--~~ai~~Ar~~~~~~~gL~~rV~-F~~~Da~~~~~~l~~FDlV 199 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID--PSANDVARRLVSSDPDLSKRMF-FHTADVMDVTESLKEYDVV 199 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHhhhccCccCCcE-EEECchhhcccccCCcCEE
Confidence 6789999999955 66776664 3 3489999999 6799999999964 55542222 3334432222 23589999
Q ss_pred EEcCcCCCC-CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA-SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~-~~~~~l~~~l~~~L~p~ 169 (169)
++.-++|+. +....+++.+++.|+||
T Consensus 200 F~~ALi~~dk~~k~~vL~~l~~~LkPG 226 (296)
T PLN03075 200 FLAALVGMDKEEKVKVIEHLGKHMAPG 226 (296)
T ss_pred EEecccccccccHHHHHHHHHHhcCCC
Confidence 999556653 89999999999999997
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=79.36 Aligned_cols=95 Identities=18% Similarity=0.168 Sum_probs=63.8
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-CCCC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDL 138 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-~~~~ 138 (169)
+.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +.+++.+++|+..+ .++++. .++.... ....
T Consensus 3 ~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~--~~~~~~~~~~~~~~-~~v~ii---~~D~~~~~~~~~ 76 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEID--PRLAPRLREKFAAA-DNLTVI---HGDALKFDLPKL 76 (169)
T ss_pred HHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECC--HHHHHHHHHHhccC-CCEEEE---ECchhcCCcccc
Confidence 344444445567799999999999999999988899999999 46999999988542 123333 2333222 2223
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHH
Q 030935 139 NPNIILGADVFYDASGKICAFEILI 163 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~ 163 (169)
+||+|+++ +.|+.. .+++..+.
T Consensus 77 ~~d~vi~n-~Py~~~--~~~i~~~l 98 (169)
T smart00650 77 QPYKVVGN-LPYNIS--TPILFKLL 98 (169)
T ss_pred CCCEEEEC-CCcccH--HHHHHHHH
Confidence 68999974 566542 34444443
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-09 Score=86.34 Aligned_cols=103 Identities=17% Similarity=0.026 Sum_probs=69.8
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.+..++.+.....++.+|||+|||+|..++.+++... +|+++|.+ +++++.+++|++.++... +. +..++...
T Consensus 67 ~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis--~~~l~~Ar~~l~~~g~~n-V~-~i~gD~~~ 142 (322)
T PRK13943 67 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICEIAKRNVRRLGIEN-VI-FVCGDGYY 142 (322)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCc-EE-EEeCChhh
Confidence 3444454444455778999999999999999988542 69999999 569999999999887742 22 22344322
Q ss_pred CCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
... ..+||+|+++-.+ +.+...+.+.|+|+
T Consensus 143 ~~~~~~~fD~Ii~~~g~------~~ip~~~~~~Lkpg 173 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGV------DEVPETWFTQLKEG 173 (322)
T ss_pred cccccCCccEEEECCch------HHhHHHHHHhcCCC
Confidence 222 2479999986332 23344566778775
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.7e-09 Score=84.68 Aligned_cols=93 Identities=11% Similarity=0.087 Sum_probs=64.6
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.|...=|.+++ ..|+... ....+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|.. .+.
T Consensus 45 ~G~FfTP~~i~-~~f~~~~---~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDis--p~al~~Ar~n~~----~v~-- 112 (279)
T PHA03411 45 SGAFFTPEGLA-WDFTIDA---HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELN--PEFARIGKRLLP----EAE-- 112 (279)
T ss_pred ceeEcCCHHHH-HHHHhcc---ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHhCc----CCE--
Confidence 56666676653 3454322 23468999999999999988775 4599999999 569999988742 222
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDA 152 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~ 152 (169)
+..++........+||+|+++.++++.
T Consensus 113 -~v~~D~~e~~~~~kFDlIIsNPPF~~l 139 (279)
T PHA03411 113 -WITSDVFEFESNEKFDVVISNPPFGKI 139 (279)
T ss_pred -EEECchhhhcccCCCcEEEEcCCcccc
Confidence 233444333334589999999888863
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-09 Score=71.03 Aligned_cols=94 Identities=23% Similarity=0.136 Sum_probs=68.7
Q ss_pred eEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+++|+|||+|..+..+++ .+.+++++|.++ .++..++++...+.. ..++...++.+... ....+||+|+++.+++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~i~~~~~~~ 77 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISP--VALELARKAAAALLADNVEVLKGDAEELPP-EADESFDVIISDPPLH 77 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCH--HHHHHHHHHHhcccccceEEEEcChhhhcc-ccCCceEEEEEcccee
Confidence 589999999999998887 445899999994 588877754333322 23333333333211 1345899999999999
Q ss_pred C-CCChHHHHHHHHHhccCC
Q 030935 151 D-ASGKICAFEILICSLFPI 169 (169)
Q Consensus 151 ~-~~~~~~l~~~l~~~L~p~ 169 (169)
+ ......+++.+.+.|+|+
T Consensus 78 ~~~~~~~~~l~~~~~~l~~~ 97 (107)
T cd02440 78 HLVEDLARFLEEARRLLKPG 97 (107)
T ss_pred ehhhHHHHHHHHHHHHcCCC
Confidence 8 889999999999999885
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-09 Score=78.70 Aligned_cols=99 Identities=20% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC--CcCCCC-CCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIFD-LNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~--~~~~~~-~~fDlI 143 (169)
.+.|.++|||-||+|.+|+.++.+|| +++++|.+ .+.+..+++|++.-+...+...+..... ...... .+||+|
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~--~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlV 118 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKD--RKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLV 118 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecC--HHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEE
Confidence 37899999999999999999999998 89999999 4699999999988875433333332222 111111 259999
Q ss_pred EEcCcCCCCCChHHHHHHHH----HhccCC
Q 030935 144 LGADVFYDASGKICAFEILI----CSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~----~~L~p~ 169 (169)
+. |+-|.....+.....+. ..|+|+
T Consensus 119 fl-DPPy~~~l~~~~~~~~~~~~~~~L~~~ 147 (187)
T COG0742 119 FL-DPPYAKGLLDKELALLLLEENGWLKPG 147 (187)
T ss_pred Ee-CCCCccchhhHHHHHHHHHhcCCcCCC
Confidence 96 99999777755555554 446653
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.7e-09 Score=87.74 Aligned_cols=98 Identities=12% Similarity=-0.022 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.+..+||||||+|...+.+|+.. ..++++|++ +.+++.+.+++..+++. +.+...+.......+.+..+|.|+..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~--~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~ln 199 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIH--TPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVH 199 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECC--HHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEe
Confidence 45689999999999999999874 489999999 56999999999888774 33333333222233455689999976
Q ss_pred CcCCCCCC------hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG------KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~------~~~l~~~l~~~L~p~ 169 (169)
-+..|... .+.+++.+++.|+||
T Consensus 200 FPdPW~KkrHRRlv~~~fL~e~~RvLkpG 228 (390)
T PRK14121 200 FPVPWDKKPHRRVISEDFLNEALRVLKPG 228 (390)
T ss_pred CCCCccccchhhccHHHHHHHHHHHcCCC
Confidence 44333322 278999999999986
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=82.10 Aligned_cols=109 Identities=17% Similarity=0.015 Sum_probs=72.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-------------
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC------------- 121 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~------------- 121 (169)
...|.+|+.... ..++.+||++|||.|.-++.+|.+|.+|+++|++ +.+++.+.. .+++..
T Consensus 23 ~~~L~~~~~~~~-~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s--~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~ 96 (218)
T PRK13255 23 NPLLQKYWPALA-LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELS--ELAVEQFFA---ENGLTPQTRQSGEFEHYQA 96 (218)
T ss_pred CHHHHHHHHhhC-CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccC--HHHHHHHHH---HcCCCcccccccccccccc
Confidence 445555664322 2256799999999999999999999999999999 458886532 222211
Q ss_pred eEEEEEcCCCCcCCC--CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 122 RVMGLTWGFLDASIF--DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~--~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.-..+..++...... ...||+|+-.-++.+. +..+..++.++++|+|+
T Consensus 97 ~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pg 148 (218)
T PRK13255 97 GEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAG 148 (218)
T ss_pred CceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCC
Confidence 011233344433211 1378999977765533 44577899999999996
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.3e-09 Score=81.21 Aligned_cols=116 Identities=15% Similarity=-0.017 Sum_probs=88.6
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--------CCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--------ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
..++++|.. +........++.++||++||||-++.-+.+. +.+|++.|++ |.||..+++..+..
T Consensus 82 lGiHRlWKd------~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Din--p~mL~vgkqRa~~~ 153 (296)
T KOG1540|consen 82 LGIHRLWKD------MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDIN--PHMLAVGKQRAKKR 153 (296)
T ss_pred cchhHHHHH------HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCC--HHHHHHHHHHHhhc
Confidence 567888865 3344445667889999999999999877663 2589999999 67999999988776
Q ss_pred CCcce-EEEEEcCCCC-cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 118 KLNCR-VMGLTWGFLD-ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~-~~~l~~~~~~-~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++... ......++.+ .++.+..||....+-=|-+..+++..++...+.||||
T Consensus 154 ~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpG 207 (296)
T KOG1540|consen 154 PLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPG 207 (296)
T ss_pred CCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCC
Confidence 65432 1222233332 2455679999999999999999999999999999997
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.9e-09 Score=89.13 Aligned_cols=106 Identities=18% Similarity=0.116 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
+..|.+.+.+.....++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.|++. ++ +..++...
T Consensus 277 ~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~--~~av~~a~~n~~~~~~~nv~---~~~~d~~~ 351 (431)
T TIGR00479 277 NEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVV--PESVEKAQQNAELNGIANVE---FLAGTLET 351 (431)
T ss_pred HHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcC--HHHHHHHHHHHHHhCCCceE---EEeCCHHH
Confidence 44455555544444456799999999999999999988899999999 56999999999999874 33 33344322
Q ss_pred C-----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 134 S-----IFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 134 ~-----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
. ....+||+|+. |+-+. .....+++.+.+ ++|
T Consensus 352 ~l~~~~~~~~~~D~vi~-dPPr~-G~~~~~l~~l~~-l~~ 388 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLLL-DPPRK-GCAAEVLRTIIE-LKP 388 (431)
T ss_pred HHHHHHhcCCCCCEEEE-CcCCC-CCCHHHHHHHHh-cCC
Confidence 1 11347999996 44442 445666666554 444
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.4e-09 Score=85.00 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCC---CCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDL---NPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~---~fD 141 (169)
++.+|||||||||..+..+++. +.+|+++|+| ++|++.+++++.......++. ..+++.... .... ...
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS--~~mL~~a~~~l~~~~p~~~v~-~i~gD~~~~~~~~~~~~~~~~ 139 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDIS--ADALKESAAALAADYPQLEVH-GICADFTQPLALPPEPAAGRR 139 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECC--HHHHHHHHHHHHhhCCCceEE-EEEEcccchhhhhcccccCCe
Confidence 5678999999999999988876 4689999999 569999999887644333322 233444321 1111 123
Q ss_pred -EEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 142 -IILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 142 -lIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
++++.-.+++.. ....+++.+.+.|+|+
T Consensus 140 ~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pg 170 (301)
T TIGR03438 140 LGFFPGSTIGNFTPEEAVAFLRRIRQLLGPG 170 (301)
T ss_pred EEEEecccccCCCHHHHHHHHHHHHHhcCCC
Confidence 344444666553 4667999999999996
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.2e-09 Score=75.84 Aligned_cols=92 Identities=17% Similarity=0.218 Sum_probs=61.1
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCH-HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl-~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
.+++|+.++....+++++||+|||+|. ++..+++.|.+|+++|+++ ..++.++++ +. .+.. ++...+
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~--~aV~~a~~~----~~--~~v~---dDlf~p- 70 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINE--KAVEKAKKL----GL--NAFV---DDLFNP- 70 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCH--HHHHHHHHh----CC--eEEE---CcCCCC-
Confidence 478888877655577899999999997 9999999999999999994 577776654 33 2222 333222
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHH
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILI 163 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~ 163 (169)
.+++-=.+|++|.....+++...+.
T Consensus 71 ---~~~~y~~a~liysirpp~el~~~~~ 95 (134)
T PRK04148 71 ---NLEIYKNAKLIYSIRPPRDLQPFIL 95 (134)
T ss_pred ---CHHHHhcCCEEEEeCCCHHHHHHHH
Confidence 3333334555565555555544443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-09 Score=81.43 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++..+...+++.....+|.+|||+|||||..+..+++. |. +|+.+|.+ +.+++.+++|++..+... +. +..++
T Consensus 56 s~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~--~~l~~~A~~~l~~~~~~n-v~-~~~gd 131 (209)
T PF01135_consen 56 SAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERD--PELAERARRNLARLGIDN-VE-VVVGD 131 (209)
T ss_dssp --HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESB--HHHHHHHHHHHHHHTTHS-EE-EEES-
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECcc--HHHHHHHHHHHHHhccCc-ee-EEEcc
Confidence 44555556666666778999999999999999999886 43 69999999 579999999999888752 22 33344
Q ss_pred CCcCCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...... ..+||.|+..-.+. .+-..|.+.|+||
T Consensus 132 g~~g~~~~apfD~I~v~~a~~------~ip~~l~~qL~~g 165 (209)
T PF01135_consen 132 GSEGWPEEAPFDRIIVTAAVP------EIPEALLEQLKPG 165 (209)
T ss_dssp GGGTTGGG-SEEEEEESSBBS------S--HHHHHTEEEE
T ss_pred hhhccccCCCcCEEEEeeccc------hHHHHHHHhcCCC
Confidence 333332 24899999876553 2224455566653
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=86.14 Aligned_cols=110 Identities=11% Similarity=-0.039 Sum_probs=76.2
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.++..++.++ ...+|.+|||+|||+|..++.+++. + ++|+++|++ +.+++.+++|++.+++.+.+.... ++
T Consensus 225 ~~s~~~~~~L----~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~--~~~l~~~~~n~~r~g~~~~v~~~~-~d 297 (426)
T TIGR00563 225 ASAQWVATWL----APQNEETILDACAAPGGKTTHILELAPQAQVVALDIH--EHRLKRVYENLKRLGLTIKAETKD-GD 297 (426)
T ss_pred HHHHHHHHHh----CCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEec-cc
Confidence 3455555555 2346789999999999999998875 3 599999999 569999999999998874432222 32
Q ss_pred CCcCC---CCCCCcEEEEc------CcCCCCCC----------------hHHHHHHHHHhccCC
Q 030935 131 LDASI---FDLNPNIILGA------DVFYDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~---~~~~fDlIi~s------d~iy~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
..... ...+||.|++- .++...+. ...++....+.|+||
T Consensus 298 ~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg 361 (426)
T TIGR00563 298 GRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG 361 (426)
T ss_pred cccccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22111 23579999952 23332222 357888889999986
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-09 Score=79.82 Aligned_cols=90 Identities=14% Similarity=-0.022 Sum_probs=60.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC------cCCCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD------ASIFDL 138 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~------~~~~~~ 138 (169)
..++.+|||||||+|..+..+++.. .+|+++|+++ |.. .. ++.+...+..+.. ......
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~---~~~-------~~--~v~~i~~D~~~~~~~~~i~~~~~~~ 116 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP---MDP-------IV--GVDFLQGDFRDELVLKALLERVGDS 116 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc---ccC-------CC--CcEEEecCCCChHHHHHHHHHhCCC
Confidence 3467899999999999999888863 3899999984 210 11 2333333333321 013345
Q ss_pred CCcEEEEcCcCCCCCC-----------hHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASG-----------KICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~-----------~~~l~~~l~~~L~p~ 169 (169)
+||+|+++...+.... .+.+++.+.+.|+||
T Consensus 117 ~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpG 158 (209)
T PRK11188 117 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPG 158 (209)
T ss_pred CCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 8999999766665432 246889999999986
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=86.43 Aligned_cols=97 Identities=14% Similarity=-0.047 Sum_probs=69.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlI 143 (169)
.++.+|||+|||+|..++.+++. ..+|+++|++ +.+++.+++|++.+++.. + .+..++.... ....+||+|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~--~~~l~~~~~n~~~~g~~~-v-~~~~~D~~~~~~~~~~~fD~V 324 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIH--EHKLKLIEENAKRLGLTN-I-ETKALDARKVHEKFAEKFDKI 324 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCe-E-EEEeCCcccccchhcccCCEE
Confidence 46789999999999999998875 3489999999 569999999999988753 2 2333333221 122589999
Q ss_pred EEcCcCCCCCC----------------------hHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASG----------------------KICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~----------------------~~~l~~~l~~~L~p~ 169 (169)
++.-+.+.... ...+++...+.|+||
T Consensus 325 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 372 (444)
T PRK14902 325 LVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKG 372 (444)
T ss_pred EEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 97544332111 245788888899986
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.2e-09 Score=86.62 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=73.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
+..|.+++.+.... .+.+||||+||+|.+|+.+++...+|+++|.+ +.+++.+++|++.|++. +++...+..+...
T Consensus 192 ~e~l~~~v~~~~~~-~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~--~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~ 268 (362)
T PRK05031 192 NEKMLEWALDATKG-SKGDLLELYCGNGNFTLALARNFRRVLATEIS--KPSVAAAQYNIAANGIDNVQIIRMSAEEFTQ 268 (362)
T ss_pred HHHHHHHHHHHhhc-CCCeEEEEeccccHHHHHHHhhCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEEECCHHHHHH
Confidence 56666666654322 23579999999999999888887799999999 56999999999999874 3343333322111
Q ss_pred CCC--------------CCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 SIF--------------DLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~~~--------------~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
... ..+||+|+. |+-+ ....+.+++.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~D~v~l-DPPR-~G~~~~~l~~l~~ 311 (362)
T PRK05031 269 AMNGVREFNRLKGIDLKSYNFSTIFV-DPPR-AGLDDETLKLVQA 311 (362)
T ss_pred HHhhcccccccccccccCCCCCEEEE-CCCC-CCCcHHHHHHHHc
Confidence 110 125899997 6666 4666777777754
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.4e-09 Score=80.60 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=67.1
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
+|.+|||||||.|.+-..+.. ++.+..++|+++ +.+..+ -.+|++ +.+.+..+....+.+.+||+||.+.+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~--~~v~~c----v~rGv~--Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDP--DNVAAC----VARGVS--VIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCH--HHHHHH----HHcCCC--EEECCHHHhHhhCCCCCccEEehHhH
Confidence 678999999999988777766 677999999994 344433 335665 45555555445566789999999999
Q ss_pred CCCCCChHHHHHHHHHh
Q 030935 149 FYDASGKICAFEILICS 165 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~ 165 (169)
+.....++.+++.+.+.
T Consensus 85 LQ~~~~P~~vL~EmlRV 101 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV 101 (193)
T ss_pred HHhHhHHHHHHHHHHHh
Confidence 99999988888777654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.7e-09 Score=82.95 Aligned_cols=62 Identities=21% Similarity=0.130 Sum_probs=51.9
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHH-HHHHH
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRV 113 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~-~~~~n 113 (169)
.++.++..|...+......+++++|||+|||||.++..+++.|+ +|+++|.++ .++. ..+.+
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~--~~l~~~l~~~ 118 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGY--NQLAEKLRQD 118 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCH--HHHHHHHhcC
Confidence 66888999999998876667899999999999999999999987 799999995 3554 34443
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=78.27 Aligned_cols=100 Identities=21% Similarity=0.166 Sum_probs=79.5
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
+.......+|.+|||.|.|+|.++.++|.. |. +|+..|+. ++.++.|++|++..++...+. +.-++..+...+.
T Consensus 86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r--~d~~k~A~~Nl~~~~l~d~v~-~~~~Dv~~~~~~~ 162 (256)
T COG2519 86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIR--EDFAKTARENLSEFGLGDRVT-LKLGDVREGIDEE 162 (256)
T ss_pred HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEec--HHHHHHHHHHHHHhccccceE-EEecccccccccc
Confidence 333445678999999999999999999973 43 89999999 569999999999887765433 3347776666666
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.||.|+. +..++-..++.++.+|+|+
T Consensus 163 ~vDav~L-----Dmp~PW~~le~~~~~Lkpg 188 (256)
T COG2519 163 DVDAVFL-----DLPDPWNVLEHVSDALKPG 188 (256)
T ss_pred ccCEEEE-----cCCChHHHHHHHHHHhCCC
Confidence 9999886 4567888999999999996
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.3e-09 Score=83.16 Aligned_cols=92 Identities=12% Similarity=0.103 Sum_probs=65.4
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +++++.+++++..++...++. +..++..... .
T Consensus 24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD--~~li~~l~~~~~~~~~~~~v~-ii~~Dal~~~-~ 99 (294)
T PTZ00338 24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEID--PRMVAELKKRFQNSPLASKLE-VIEGDALKTE-F 99 (294)
T ss_pred HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECC--HHHHHHHHHHHHhcCCCCcEE-EEECCHhhhc-c
Confidence 44455555555678899999999999999999988899999999 569999999988765332222 3444443221 2
Q ss_pred CCCcEEEEcCcCCCCCC
Q 030935 138 LNPNIILGADVFYDASG 154 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~ 154 (169)
.+||.|++ .+-|+...
T Consensus 100 ~~~d~Vva-NlPY~Ist 115 (294)
T PTZ00338 100 PYFDVCVA-NVPYQISS 115 (294)
T ss_pred cccCEEEe-cCCcccCc
Confidence 36898886 55565543
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.7e-09 Score=82.85 Aligned_cols=96 Identities=18% Similarity=0.193 Sum_probs=74.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-------CC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-------FD 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-------~~ 137 (169)
..+.++|||+|+|+|..++.+|+. +.+|+.+|.+ ++.++.|++|++.+++..++ .+..|+..+.+ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d--~e~~~~Ar~n~~~aGl~~~I-~li~GdA~e~L~~l~~~~~~ 192 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERD--SNSLEVAKRYYELAGVSHKV-NVKHGLAAESLKSMIQNGEG 192 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcE-EEEEcCHHHHHHHHHhcccC
Confidence 346789999999999999999874 3489999999 56999999999999987443 35555543211 12
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|+. |. +...+...++.+.+.|+||
T Consensus 193 ~~FD~VFI-Da--~K~~Y~~y~e~~l~lL~~G 221 (278)
T PLN02476 193 SSYDFAFV-DA--DKRMYQDYFELLLQLVRVG 221 (278)
T ss_pred CCCCEEEE-CC--CHHHHHHHHHHHHHhcCCC
Confidence 48999996 43 3577889999999999986
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.1e-08 Score=81.48 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
...+++.+.+... ..+.+|||+|||+|..+..+++.. ..|+++|++ +.+++.++++. ..+.+...+..
T Consensus 71 ~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s--~~~l~~A~~~~----~~~~~~~~d~~ 143 (272)
T PRK11088 71 RDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDIS--KVAIKYAAKRY----PQVTFCVASSH 143 (272)
T ss_pred HHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCC--HHHHHHHHHhC----CCCeEEEeecc
Confidence 3444444544322 245689999999999998887642 379999999 56998887653 22333323322
Q ss_pred CCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ .++.+.+||+|++.. .+ ..++.+.+.|+|+
T Consensus 144 ~--lp~~~~sfD~I~~~~---~~----~~~~e~~rvLkpg 174 (272)
T PRK11088 144 R--LPFADQSLDAIIRIY---AP----CKAEELARVVKPG 174 (272)
T ss_pred c--CCCcCCceeEEEEec---CC----CCHHHHHhhccCC
Confidence 2 234456899999753 22 3456788889886
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.2e-09 Score=86.20 Aligned_cols=99 Identities=20% Similarity=0.074 Sum_probs=79.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-----CCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-----FDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-----~~~~fDl 142 (169)
.+|++||++-|=||..|+.+|..|| +|+.+|+|. ..++.+++|.++|+++...+.+.+++..+.+ ...+||+
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~--~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl 293 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSK--RALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL 293 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccH--HHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence 3699999999999999999999999 899999995 5999999999999997655556666654322 2349999
Q ss_pred EEEcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
||.-.+-|-. .++..++..+.+.|+|+
T Consensus 294 IilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pg 329 (393)
T COG1092 294 IILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPG 329 (393)
T ss_pred EEECCcccccCcccchhHHHHHHHHHHHHHHHcCCC
Confidence 9986666632 33667888888888885
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=81.01 Aligned_cols=87 Identities=14% Similarity=0.009 Sum_probs=61.8
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
-+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++ .+++.+++++... .++.+. .++.... .
T Consensus 16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~--~~~~~l~~~~~~~-~~v~ii---~~D~~~~-~ 88 (258)
T PRK14896 16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDP--RLAEFLRDDEIAA-GNVEII---EGDALKV-D 88 (258)
T ss_pred HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCH--HHHHHHHHHhccC-CCEEEE---EeccccC-C
Confidence 3445555555556788999999999999999999988999999994 6999999887541 123333 3333221 1
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-..||.|+++-+.|
T Consensus 89 ~~~~d~Vv~NlPy~ 102 (258)
T PRK14896 89 LPEFNKVVSNLPYQ 102 (258)
T ss_pred chhceEEEEcCCcc
Confidence 12589999876644
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.3e-09 Score=82.58 Aligned_cols=89 Identities=15% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|++ ++|++.+++++.. .++.+...++.... ..+
T Consensus 30 i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d--~~~~~~~~~~~~~--~~v~~i~~D~~~~~--~~~ 103 (272)
T PRK00274 30 ILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEID--RDLAPILAETFAE--DNLTIIEGDALKVD--LSE 103 (272)
T ss_pred HHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECC--HHHHHHHHHhhcc--CceEEEEChhhcCC--HHH
Confidence 44556555555677899999999999999999998899999999 5699999887743 23333333333221 111
Q ss_pred CCCcEEEEcCcCCCCC
Q 030935 138 LNPNIILGADVFYDAS 153 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~ 153 (169)
..++.|+++-+ |+..
T Consensus 104 ~~~~~vv~NlP-Y~is 118 (272)
T PRK00274 104 LQPLKVVANLP-YNIT 118 (272)
T ss_pred cCcceEEEeCC-ccch
Confidence 12588888755 5553
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-08 Score=80.01 Aligned_cols=95 Identities=14% Similarity=0.071 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlIi~ 145 (169)
++++|||||||+|.++..+++. +.+|+++|++ +++++.+++++..++...++. +..++.... ..+.+||+|+.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEid--p~vi~~A~~~f~~~~~~~rv~-v~~~Da~~~l~~~~~~yD~I~~ 142 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEIN--PQVIAVARNHFELPENGERFE-VIEADGAEYIAVHRHSTDVILV 142 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHcCCCCCCCceE-EEECCHHHHHHhCCCCCCEEEE
Confidence 4578999999999999988775 3589999999 569999999987554322222 223333221 12358999997
Q ss_pred cCcCCCCC------ChHHHHHHHHHhccCC
Q 030935 146 ADVFYDAS------GKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~------~~~~l~~~l~~~L~p~ 169 (169)
|. |+.. ....+++.+++.|+|+
T Consensus 143 -D~-~~~~~~~~~l~t~efl~~~~~~L~pg 170 (262)
T PRK04457 143 -DG-FDGEGIIDALCTQPFFDDCRNALSSD 170 (262)
T ss_pred -eC-CCCCCCccccCcHHHHHHHHHhcCCC
Confidence 43 3222 2378999999999996
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-08 Score=81.94 Aligned_cols=113 Identities=17% Similarity=0.081 Sum_probs=76.0
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (169)
+.+++.+..++..+.. ..+|.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++..++.. +.
T Consensus 232 ~~vqd~~s~l~~~~l~---~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s--~~~l~~~~~~~~~~g~~~-v~- 304 (445)
T PRK14904 232 VSVQNPTQALACLLLN---PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRY--PQKLEKIRSHASALGITI-IE- 304 (445)
T ss_pred EEEeCHHHHHHHHhcC---CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHHHHhCCCe-EE-
Confidence 4666555555544432 346789999999999999888764 3489999999 569999999999888752 22
Q ss_pred EEcCCCCcCCCCCCCcEEEEcCcCC--------------CC--C-------ChHHHHHHHHHhccCC
Q 030935 126 LTWGFLDASIFDLNPNIILGADVFY--------------DA--S-------GKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~~~~~~~~~fDlIi~sd~iy--------------~~--~-------~~~~l~~~l~~~L~p~ 169 (169)
...++......+.+||.|+. |+.+ .. . ....++....+.|+||
T Consensus 305 ~~~~Da~~~~~~~~fD~Vl~-D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 370 (445)
T PRK14904 305 TIEGDARSFSPEEQPDAILL-DAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPG 370 (445)
T ss_pred EEeCcccccccCCCCCEEEE-cCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22233322223458999995 3222 11 1 1235888889999986
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-08 Score=82.61 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=69.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-----CCCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-----IFDLN 139 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-----~~~~~ 139 (169)
..+|.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+++.. +. ...++.... ....+
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~--~~rl~~~~~n~~r~g~~~-v~-~~~~D~~~~~~~~~~~~~~ 325 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRS--ASRLKKLQENAQRLGLKS-IK-ILAADSRNLLELKPQWRGY 325 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCC--HHHHHHHHHHHHHcCCCe-EE-EEeCChhhccccccccccc
Confidence 446789999999999999988875 2 489999999 569999999999998753 22 222332211 12358
Q ss_pred CcEEEEcCc------CCCCCC----------------hHHHHHHHHHhccCC
Q 030935 140 PNIILGADV------FYDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~------iy~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
||.|++--+ +....+ ...+++...+.|+||
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpg 377 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPG 377 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999996322 222221 357888889999986
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.8e-08 Score=77.55 Aligned_cols=97 Identities=9% Similarity=-0.083 Sum_probs=66.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
.+|.+|||+|||+|..++.+++. ...|+++|++ +.+++.+++|++.+++.. .+...+.... .....+||.|+
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~--~~~l~~~~~n~~~~g~~~v~~~~~D~~~~--~~~~~~fD~Vl 145 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFS--KSRTKVLIANINRCGVLNVAVTNFDGRVF--GAAVPKFDAIL 145 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHHcCCCcEEEecCCHHHh--hhhccCCCEEE
Confidence 46789999999999999988775 2489999999 569999999999988742 2222222111 11223699999
Q ss_pred EcCcCCCCC----------------------ChHHHHHHHHHhccCC
Q 030935 145 GADVFYDAS----------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~----------------------~~~~l~~~l~~~L~p~ 169 (169)
.--+..... ....+++...+.|+|+
T Consensus 146 ~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpg 192 (264)
T TIGR00446 146 LDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPG 192 (264)
T ss_pred EcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 743333211 1245788888888885
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.2e-08 Score=82.44 Aligned_cols=99 Identities=13% Similarity=-0.047 Sum_probs=69.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlI 143 (169)
..+|.+|||+|||+|..++.++.. +.+|+++|++ +.+++.+++|++..++.. ++...+..... .....+||.|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis--~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~-~~~~~~fD~V 311 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDIS--REKIQLVEKHAKRLKLSSIEIKIADAERLT-EYVQDTFDRI 311 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCeEEEEECchhhhh-hhhhccCCEE
Confidence 346789999999999999988875 3589999999 569999999999888752 33322222211 1224589999
Q ss_pred EEcCcCCCCC----------------------ChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDAS----------------------GKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~----------------------~~~~l~~~l~~~L~p~ 169 (169)
++--+..... ....++....+.|+||
T Consensus 312 l~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 359 (431)
T PRK14903 312 LVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG 359 (431)
T ss_pred EECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9733332111 1255688888888886
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.4e-08 Score=81.34 Aligned_cols=96 Identities=17% Similarity=0.026 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhC--C--cceEEEEEcCCCCcCC--CCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNK--L--NCRVMGLTWGFLDASI--FDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~--~--~~~~~~l~~~~~~~~~--~~~~fD 141 (169)
+.++||+||||+|.++..+++. +. +|+++|++ +++++.+++++...+ . +.++ .+..++..... ...+||
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid--~~vv~~a~~~~~~~~~~~~~d~rv-~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEID--ERVVEVCRKYLPEIAGGAYDDPRV-ELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCC--HHHHHHHHHHhHHhccccccCCce-EEEECchHHHHhhCCCccc
Confidence 4579999999999999988886 43 89999999 569999999876432 1 1222 23444432211 345899
Q ss_pred EEEEcCcC--CCCC---ChHHHHHHHHHhccCC
Q 030935 142 IILGADVF--YDAS---GKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~i--y~~~---~~~~l~~~l~~~L~p~ 169 (169)
+|++ |.. +... ....+++.+++.|+|+
T Consensus 153 vIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~g 184 (283)
T PRK00811 153 VIIV-DSTDPVGPAEGLFTKEFYENCKRALKED 184 (283)
T ss_pred EEEE-CCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 9997 431 1111 1267889999999986
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=76.91 Aligned_cols=96 Identities=17% Similarity=0.082 Sum_probs=74.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCCCCcE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDLNPNI 142 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~~fDl 142 (169)
...++|||+|.+.|+.++.+|.. ..+++.+|.+ +++.+.|++|++..+...++..+.-++..+ .....+||+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~--~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl 135 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERD--EERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL 135 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCC--HHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence 36789999999999999999874 2389999999 579999999999999887644333233322 223469999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+. | .....++.+++.+...|+||
T Consensus 136 iFI-D--adK~~yp~~le~~~~lLr~G 159 (219)
T COG4122 136 VFI-D--ADKADYPEYLERALPLLRPG 159 (219)
T ss_pred EEE-e--CChhhCHHHHHHHHHHhCCC
Confidence 995 3 35677899999999999986
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=80.61 Aligned_cols=117 Identities=19% Similarity=0.086 Sum_probs=76.9
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.+|+.. .-...-.++.++ .+|++||++-|=||.+|+.+++.|| +|+.+|.| ..+++.+++|+++|+++....
T Consensus 104 ktGlFl--DqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S--~~al~~a~~N~~lNg~~~~~~ 176 (286)
T PF10672_consen 104 KTGLFL--DQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSS--KRALEWAKENAALNGLDLDRH 176 (286)
T ss_dssp STSS-G--GGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES---HHHHHHHHHHHHHTT-CCTCE
T ss_pred cceEcH--HHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccce
Confidence 456532 434444455443 3689999999999999999999998 79999999 469999999999999864333
Q ss_pred EEEcCCCCcCC----CCCCCcEEEEcCcCCCCC------ChHHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASI----FDLNPNIILGADVFYDAS------GKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~----~~~~fDlIi~sd~iy~~~------~~~~l~~~l~~~L~p~ 169 (169)
.+...+....+ ...+||+||+-.+-|-.. ++..+++.+.+.|+|+
T Consensus 177 ~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~g 231 (286)
T PF10672_consen 177 RFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPG 231 (286)
T ss_dssp EEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEE
T ss_pred EEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34344432211 235999999977766432 3556777777777764
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=77.70 Aligned_cols=93 Identities=14% Similarity=0.062 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+..-|||+|||||+.|-.+...|...+++|+| +.|++.+.+ .... ..+...+.|.- .++.+..||-+|+--.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiS--psML~~a~~--~e~e--gdlil~DMG~G-lpfrpGtFDg~ISISAv 122 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDIS--PSMLEQAVE--RELE--GDLILCDMGEG-LPFRPGTFDGVISISAV 122 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCC--HHHHHHHHH--hhhh--cCeeeeecCCC-CCCCCCccceEEEeeee
Confidence 56689999999999999999999899999999 569998886 2222 23344555532 35567799999976666
Q ss_pred CCCCC-----------hHHHHHHHHHhccCC
Q 030935 150 YDASG-----------KICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~-----------~~~l~~~l~~~L~p~ 169 (169)
.+.-+ +-.||.+|..+|+++
T Consensus 123 QWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg 153 (270)
T KOG1541|consen 123 QWLCNADKSLHVPKKRLLRFFGTLYSCLKRG 153 (270)
T ss_pred eeecccCccccChHHHHHHHhhhhhhhhccC
Confidence 54311 345788888888764
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=74.92 Aligned_cols=114 Identities=12% Similarity=-0.007 Sum_probs=72.2
Q ss_pred cceeecch-HHHHHHHHHh---ccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHH-HhC
Q 030935 47 YGLFVWPC-SVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCE-MNK 118 (169)
Q Consensus 47 ~g~~~W~~-~~~La~~l~~---~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~-~n~ 118 (169)
.-+++|.- --.||.-++. +....++.+|||||||+|..+..++... ..|+++|+++ ++++.+...++ ..+
T Consensus 105 ~eyR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~--r~~~dLl~~ak~r~N 182 (293)
T PTZ00146 105 IEYRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSH--RSGRDLTNMAKKRPN 182 (293)
T ss_pred ceeeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcH--HHHHHHHHHhhhcCC
Confidence 35899976 2244444433 2345578899999999999999999863 3799999994 46544443332 222
Q ss_pred CcceEEEEEcCCCCcC----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 119 LNCRVMGLTWGFLDAS----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 119 ~~~~~~~l~~~~~~~~----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ .+.. ++...+ .....||+|++. +. .+.+...++..+.+.|||+
T Consensus 183 I--~~I~---~Da~~p~~y~~~~~~vDvV~~D-va-~pdq~~il~~na~r~LKpG 230 (293)
T PTZ00146 183 I--VPII---EDARYPQKYRMLVPMVDVIFAD-VA-QPDQARIVALNAQYFLKNG 230 (293)
T ss_pred C--EEEE---CCccChhhhhcccCCCCEEEEe-CC-CcchHHHHHHHHHHhccCC
Confidence 2 2221 222111 122479999974 42 4555566777889999986
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=9.3e-09 Score=78.06 Aligned_cols=95 Identities=16% Similarity=0.073 Sum_probs=71.7
Q ss_pred eEEEECCCCCHHHHHHH-HhCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a-~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
.|||+|||||.---+.- +.+.+|+++|-++ .|.+.+.+.++.+.. ++......-+.....+.+.++|.|+++-++-
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~--~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNE--KMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcH--HHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 58999999996654443 4567999999995 599999888887743 2221222223222234566999999999999
Q ss_pred CCCChHHHHHHHHHhccCC
Q 030935 151 DASGKICAFEILICSLFPI 169 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p~ 169 (169)
..++....++.+.+.|+|+
T Consensus 157 Sve~~~k~L~e~~rlLRpg 175 (252)
T KOG4300|consen 157 SVEDPVKQLNEVRRLLRPG 175 (252)
T ss_pred ccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999996
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-08 Score=83.16 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=65.9
Q ss_pred CCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd 147 (169)
+.+|||++||+|..|+.+++. ++ +|+++|++ +.+++.+++|++.|++... .+..++...... ..+||+|+. |
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din--~~Av~~a~~N~~~N~~~~~--~v~~~Da~~~l~~~~~fD~V~l-D 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDIN--PDAVELIKKNLELNGLENE--KVFNKDANALLHEERKFDVVDI-D 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCce--EEEhhhHHHHHhhcCCCCEEEE-C
Confidence 468999999999999999875 43 89999999 5699999999999988632 122233222111 357999998 7
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+. ....+++......++|+
T Consensus 133 P~---Gs~~~~l~~al~~~~~~ 151 (382)
T PRK04338 133 PF---GSPAPFLDSAIRSVKRG 151 (382)
T ss_pred CC---CCcHHHHHHHHHHhcCC
Confidence 63 55667777755556653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.6e-08 Score=72.79 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=63.9
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC-
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD- 132 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~- 132 (169)
.+.+...+.....++.+|||+|||+|.++..+++.. .+|+++|+++. + ...+ ..+...+..+..
T Consensus 19 ~~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~--~--------~~~~--i~~~~~d~~~~~~ 86 (188)
T TIGR00438 19 KLLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM--K--------PIEN--VDFIRGDFTDEEV 86 (188)
T ss_pred HHHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEecccc--c--------cCCC--ceEEEeeCCChhH
Confidence 444455545555688899999999999999887753 27999999962 2 1112 233333433211
Q ss_pred -----cCCCCCCCcEEEEcCcCCC-----CC------ChHHHHHHHHHhccCC
Q 030935 133 -----ASIFDLNPNIILGADVFYD-----AS------GKICAFEILICSLFPI 169 (169)
Q Consensus 133 -----~~~~~~~fDlIi~sd~iy~-----~~------~~~~l~~~l~~~L~p~ 169 (169)
......+||+|++.-..+. .. ..+.+++.+.+.|+|+
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg 139 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK 139 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC
Confidence 0123458999998543221 11 1367889999999986
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=82.14 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~ 133 (169)
...|.+++.+.... .+.+|||||||+|.+|+.+++...+|+++|++ +++++.+++|++.|++. +++...+..+...
T Consensus 183 ~~~l~~~v~~~~~~-~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~--~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 183 NIKMLEWACEVTQG-SKGDLLELYCGNGNFSLALAQNFRRVLATEIA--KPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEeccccHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 45555555554322 23479999999999999999887799999999 56999999999999874 3433333322111
Q ss_pred C------C---C-----CCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 S------I---F-----DLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~------~---~-----~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
. . . ..+||+|+. |+- .....+.+++.|.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~d~v~l-DPP-R~G~~~~~l~~l~~ 302 (353)
T TIGR02143 260 AMNGVREFRRLKGIDLKSYNCSTIFV-DPP-RAGLDPDTCKLVQA 302 (353)
T ss_pred HHhhccccccccccccccCCCCEEEE-CCC-CCCCcHHHHHHHHc
Confidence 1 0 0 124899997 655 45666777777654
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-08 Score=76.81 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=68.8
Q ss_pred hHHHHHHHHHh---ccCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE--
Q 030935 54 CSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL-- 126 (169)
Q Consensus 54 ~~~~La~~l~~---~~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l-- 126 (169)
-++.+.+++.. +..-+++..+||+|||+|.+++.++.. + ..|+++|.++ .++..+.+|++.+++...+...
T Consensus 129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~--~Ai~La~eN~qr~~l~g~i~v~~~ 206 (328)
T KOG2904|consen 129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSK--AAIKLAKENAQRLKLSGRIEVIHN 206 (328)
T ss_pred cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccH--HHHHHHHHHHHHHhhcCceEEEec
Confidence 35555556553 233445668999999999999988774 3 3799999995 5999999999999876543322
Q ss_pred ----EcCCCCcCCCCCCCcEEEEcCcCCCCCChH
Q 030935 127 ----TWGFLDASIFDLNPNIILGADVFYDASGKI 156 (169)
Q Consensus 127 ----~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~ 156 (169)
+|.+. .+....++|+++|+.+.-...+.+
T Consensus 207 ~me~d~~~~-~~l~~~~~dllvsNPPYI~~dD~~ 239 (328)
T KOG2904|consen 207 IMESDASDE-HPLLEGKIDLLVSNPPYIRKDDNR 239 (328)
T ss_pred ccccccccc-cccccCceeEEecCCCcccccchh
Confidence 22221 123446999999987765444433
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=77.83 Aligned_cols=109 Identities=17% Similarity=0.060 Sum_probs=78.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+..-++++.......+.++|||+||++|..++.+|+. +++|+.+|.+ ++..+.|++|++..++..++. +..++.
T Consensus 30 ~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~--~~~~~~A~~~~~~ag~~~~I~-~~~gda 106 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEID--PERAEIARENFRKAGLDDRIE-VIEGDA 106 (205)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESS--HHHHHHHHHHHHHTTGGGGEE-EEES-H
T ss_pred CHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCc--HHHHHHHHHHHHhcCCCCcEE-EEEecc
Confidence 4444444443333345689999999999999999974 5699999999 679999999999998865543 444543
Q ss_pred CcC---C----CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DAS---I----FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~---~----~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+. . ...+||+|+. |. ....+...++.+...|+||
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFi-Da--~K~~y~~y~~~~~~ll~~g 148 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFI-DA--DKRNYLEYFEKALPLLRPG 148 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEE-ES--TGGGHHHHHHHHHHHEEEE
T ss_pred HhhHHHHHhccCCCceeEEEE-cc--cccchhhHHHHHhhhccCC
Confidence 221 1 1247999996 43 4677888888888888875
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=80.50 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=64.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
+.+|||+.||+|..|+.+++. |+ +|+++|++ +.+++.+++|++.|+.. +++...+....... ...+||+|..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n--~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~-~~~~fDvIdl- 120 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDIN--PKAVESIKNNVEYNSVENIEVPNEDAANVLRY-RNRKFHVIDI- 120 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH-hCCCCCEEEe-
Confidence 358999999999999999987 55 89999999 57999999999999875 33333222222111 1247999997
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
|+ |. ...+++....+.+++
T Consensus 121 DP-fG--s~~~fld~al~~~~~ 139 (374)
T TIGR00308 121 DP-FG--TPAPFVDSAIQASAE 139 (374)
T ss_pred CC-CC--CcHHHHHHHHHhccc
Confidence 88 53 334566655555543
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.78 E-value=8.7e-08 Score=78.09 Aligned_cols=111 Identities=19% Similarity=0.020 Sum_probs=85.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc-CCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW-GFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~-~~~~~ 133 (169)
...||+.|.+.....+|..|||=-||||.+-+.+...|++|+++|++ .+|++-++.|++..++..- ..+.. +....
T Consensus 182 ~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did--~~mv~gak~Nl~~y~i~~~-~~~~~~Da~~l 258 (347)
T COG1041 182 DPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDID--ERMVRGAKINLEYYGIEDY-PVLKVLDATNL 258 (347)
T ss_pred CHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchH--HHHHhhhhhhhhhhCcCce-eEEEecccccC
Confidence 35677777776677789999999999999999999999999999999 4699999999999886532 22332 22222
Q ss_pred CCCCCCCcEEEEcCcCCCCCC----------hHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDASG----------KICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~~----------~~~l~~~l~~~L~p~ 169 (169)
++.+..+|.|++ |+-|-... +..+++.+.+.|+++
T Consensus 259 pl~~~~vdaIat-DPPYGrst~~~~~~l~~Ly~~~le~~~evLk~g 303 (347)
T COG1041 259 PLRDNSVDAIAT-DPPYGRSTKIKGEGLDELYEEALESASEVLKPG 303 (347)
T ss_pred CCCCCccceEEe-cCCCCcccccccccHHHHHHHHHHHHHHHhhcC
Confidence 344446999996 99884433 677888999999874
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-09 Score=79.68 Aligned_cols=91 Identities=13% Similarity=0.033 Sum_probs=64.6
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC--CCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF--DLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~--~~~fDlIi~sd~iy 150 (169)
.++|+|||+|..++.+|..-.+|++||.+ +.||+.+++.-...-.... ..+.-.+. ..+. +++.|+|+|+-++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s--~~mL~~a~k~~~~~y~~t~-~~ms~~~~-v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVS--EAMLKVAKKHPPVTYCHTP-STMSSDEM-VDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCC--HHHHHHhhcCCCcccccCC-cccccccc-ccccCCCcceeeehhhhhHH
Confidence 79999999998899999987799999999 5699977653221111100 00110111 1122 56999999999999
Q ss_pred CCCChHHHHHHHHHhccC
Q 030935 151 DASGKICAFEILICSLFP 168 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p 168 (169)
+-. ++.+++.+.+.|+|
T Consensus 112 WFd-le~fy~~~~rvLRk 128 (261)
T KOG3010|consen 112 WFD-LERFYKEAYRVLRK 128 (261)
T ss_pred hhc-hHHHHHHHHHHcCC
Confidence 764 78899999999987
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.5e-08 Score=71.10 Aligned_cols=95 Identities=15% Similarity=0.082 Sum_probs=67.7
Q ss_pred cchHHHHHHHHH----hccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 52 WPCSVILAEYVW----QQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 52 W~~~~~La~~l~----~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
+|....+|.-|. +.-..+.|++++|||||+|.+++.++..++ .|++.|++ +++++.+.+|++...++..+..-
T Consensus 26 Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDId--peALEIf~rNaeEfEvqidlLqc 103 (185)
T KOG3420|consen 26 YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDID--PEALEIFTRNAEEFEVQIDLLQC 103 (185)
T ss_pred CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecC--HHHHHHHhhchHHhhhhhheeee
Confidence 444444444333 223568999999999999999988888887 69999999 67999999999887776644333
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+..+. ......||.++-+..+=
T Consensus 104 dildl--e~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 104 DILDL--ELKGGIFDTAVINPPFG 125 (185)
T ss_pred eccch--hccCCeEeeEEecCCCC
Confidence 33322 22335889988766653
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=71.75 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhccC---CCCCC-eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEE
Q 030935 53 PCSVILAEYVWQQRY---RFSGA-NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVM 124 (169)
Q Consensus 53 ~~~~~La~~l~~~~~---~~~~~-~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~ 124 (169)
.+-..+.+|+..+.. ..+.. +|||||||.|.+-.-+++.|. +.+++|+++ .+++.|+.-++.++.+ ++++
T Consensus 46 ~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~--~AV~LA~niAe~~~~~n~I~f~ 123 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSE--KAVELAQNIAERDGFSNEIRFQ 123 (227)
T ss_pred cHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCH--HHHHHHHHHHHhcCCCcceeEE
Confidence 456677788876643 12333 999999999999999999886 599999994 5999988877888876 4555
Q ss_pred EEEcCCCCcCCCCCCCcEEE
Q 030935 125 GLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi 144 (169)
.++.-.. ...+.+||+|+
T Consensus 124 q~DI~~~--~~~~~qfdlvl 141 (227)
T KOG1271|consen 124 QLDITDP--DFLSGQFDLVL 141 (227)
T ss_pred EeeccCC--cccccceeEEe
Confidence 5544332 34455888887
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=74.61 Aligned_cols=56 Identities=16% Similarity=0.187 Sum_probs=46.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|.+ +++++.++.+..
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d--~~~~~~l~~~~~ 72 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEID--PRLAEILRKLLS 72 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECC--HHHHHHHHHHhC
Confidence 44455555455577899999999999999999998899999999 469999988774
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=79.86 Aligned_cols=96 Identities=16% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-----C-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG-----S-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g-----a-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
+++.||++|||+|.++..+++.+ + +|++++.++. ++..+++.++.|+...++. +..++.+.-..+.++|+|
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~--A~~~l~~~v~~n~w~~~V~-vi~~d~r~v~lpekvDII 262 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPN--AVVTLQKRVNANGWGDKVT-VIHGDMREVELPEKVDII 262 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTH--HHHHHHHHHHHTTTTTTEE-EEES-TTTSCHSS-EEEE
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHh--HHHHHHHHHHhcCCCCeEE-EEeCcccCCCCCCceeEE
Confidence 46789999999999999888765 3 8999999964 6666666667788755543 455666554456699999
Q ss_pred EEcCcC---CCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVF---YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~i---y~~~~~~~l~~~l~~~L~p~ 169 (169)
|+ ..+ =..+..+..+....+.|+|+
T Consensus 263 VS-ElLGsfg~nEl~pE~Lda~~rfLkp~ 290 (448)
T PF05185_consen 263 VS-ELLGSFGDNELSPECLDAADRFLKPD 290 (448)
T ss_dssp EE----BTTBTTTSHHHHHHHGGGGEEEE
T ss_pred EE-eccCCccccccCHHHHHHHHhhcCCC
Confidence 95 443 12345566677777788874
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.68 E-value=5e-08 Score=74.43 Aligned_cols=88 Identities=16% Similarity=0.029 Sum_probs=57.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..+|.+|+|+.||.|.+++.+|+ .++.|++.|++ |.+++.+++|+++|++...+..+ .++.........||-|+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~N--p~a~~~L~~Ni~lNkv~~~i~~~-~~D~~~~~~~~~~drvim 175 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLN--PDAVEYLKENIRLNKVENRIEVI-NGDAREFLPEGKFDRVIM 175 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES---HHHHHHHHHHHHHTT-TTTEEEE-ES-GGG---TT-EEEEEE
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCC--HHHHHHHHHHHHHcCCCCeEEEE-cCCHHHhcCccccCEEEE
Confidence 34688999999999999999999 55689999999 67999999999999998665434 333333333568999998
Q ss_pred cCcCCCCCChHHH
Q 030935 146 ADVFYDASGKICA 158 (169)
Q Consensus 146 sd~iy~~~~~~~l 158 (169)
.-+-.....++.+
T Consensus 176 ~lp~~~~~fl~~~ 188 (200)
T PF02475_consen 176 NLPESSLEFLDAA 188 (200)
T ss_dssp --TSSGGGGHHHH
T ss_pred CChHHHHHHHHHH
Confidence 6655444444443
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.2e-07 Score=75.37 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCCCCc---CCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLDA---SIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~~~~---~~~~~~fDl 142 (169)
..++||+||||.|.+...+++.. .+|+++|++ +++++.+++.+... +.+.....+.+++... ...+.+||+
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD--~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEID--KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 46799999999999999888864 389999999 56999999987542 1221122344555322 222458999
Q ss_pred EEEcCcCCCCC-----ChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDAS-----GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~-----~~~~l~~~l~~~L~p~ 169 (169)
|++ |..-... ....+++.+++.|+|+
T Consensus 169 Ii~-D~~dp~~~~~~L~t~ef~~~~~~~L~pg 199 (308)
T PLN02366 169 IIV-DSSDPVGPAQELFEKPFFESVARALRPG 199 (308)
T ss_pred EEE-cCCCCCCchhhhhHHHHHHHHHHhcCCC
Confidence 997 4422111 1356899999999986
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=70.76 Aligned_cols=93 Identities=15% Similarity=0.112 Sum_probs=62.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--e---------EEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--N---------VTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~---------V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
..||.-|.......++..+||--||+|.+.+.++..+. . +++.|++ +++++.++.|++..+....+.
T Consensus 14 ~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~--~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 14 PTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDID--PKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESS--HHHHHHHHHHHHHTT-CGGEE
T ss_pred HHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCC--HHHHHHHHHHHHhcccCCceE
Confidence 45666666655555778999999999999999888654 3 7799999 569999999999988865544
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
...|+....+.....+|+|++ |+-|-
T Consensus 92 ~~~~D~~~l~~~~~~~d~Ivt-nPPyG 117 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVT-NPPYG 117 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEE-E--ST
T ss_pred EEecchhhcccccCCCCEEEE-Ccchh
Confidence 444443322334568999997 55553
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.1e-07 Score=74.74 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=72.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--------CC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--------FD 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--------~~ 137 (169)
.+.++|||||+++|+.++++|+. +.+|+.+|.+ ++..+.|+.|++..++..++. +..|+..+.+ ..
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~--~~~~~~Ar~~~~~ag~~~~I~-~~~G~a~e~L~~l~~~~~~~ 154 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDIN--RENYELGLPVIQKAGVAHKID-FREGPALPVLDQMIEDGKYH 154 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceE-EEeccHHHHHHHHHhccccC
Confidence 35679999999999999999874 4589999999 568999999999998764443 4455432211 12
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|+. |. +...+...++.+...|+||
T Consensus 155 ~~fD~iFi-Da--dK~~Y~~y~~~~l~ll~~G 183 (247)
T PLN02589 155 GTFDFIFV-DA--DKDNYINYHKRLIDLVKVG 183 (247)
T ss_pred CcccEEEe-cC--CHHHhHHHHHHHHHhcCCC
Confidence 58999996 42 3667788888888999886
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.7e-07 Score=70.90 Aligned_cols=118 Identities=8% Similarity=-0.094 Sum_probs=76.3
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH----------
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE---------- 115 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~---------- 115 (169)
.+|+..=.....|.+|+.+... .++.+||..|||.|.-.+.+|.+|.+|+++|+++ .+++.+.+...
T Consensus 20 ~~~f~~~~pnp~L~~~~~~l~~-~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~--~Ai~~~~~e~~~~~~~~~~~~ 96 (226)
T PRK13256 20 DVGFCQESPNEFLVKHFSKLNI-NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSE--KAVLSFFSQNTINYEVIHGND 96 (226)
T ss_pred CCCCccCCCCHHHHHHHHhcCC-CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCH--HHHHHHHHHcCCCcceecccc
Confidence 3454333345566666655432 2567999999999999999999999999999994 58877644210
Q ss_pred ---HhCCcceEEEEEcCCCCcCCC----CCCCcEEEEcCcC--CCCCChHHHHHHHHHhccCC
Q 030935 116 ---MNKLNCRVMGLTWGFLDASIF----DLNPNIILGADVF--YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 116 ---~n~~~~~~~~l~~~~~~~~~~----~~~fDlIi~sd~i--y~~~~~~~l~~~l~~~L~p~ 169 (169)
..+..++ +..+++..... ..+||+|+=.-++ ..++.-..-++.+++.|+|+
T Consensus 97 ~~~~~~~~i~---~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pg 156 (226)
T PRK13256 97 YKLYKGDDIE---IYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNN 156 (226)
T ss_pred cceeccCceE---EEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0112222 33444433211 1379997743333 34455677889999999985
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.2e-07 Score=80.16 Aligned_cols=106 Identities=17% Similarity=0.083 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~ 133 (169)
+..|..+........++.++||+=||.|.+|+.+|+...+|+++|++ +++++.|++|++.|++.. .+...+..++..
T Consensus 278 ~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~--~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~ 355 (432)
T COG2265 278 AEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEIS--PEAVEAAQENAAANGIDNVEFIAGDAEEFTP 355 (432)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecC--HHHHHHHHHHHHHcCCCcEEEEeCCHHHHhh
Confidence 66777777777666677899999999999999999999999999999 679999999999999874 333222222221
Q ss_pred CC-CCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 134 SI-FDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 134 ~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
.. ....||.|+. |+.= ...-+.+++.|.+
T Consensus 356 ~~~~~~~~d~Vvv-DPPR-~G~~~~~lk~l~~ 385 (432)
T COG2265 356 AWWEGYKPDVVVV-DPPR-AGADREVLKQLAK 385 (432)
T ss_pred hccccCCCCEEEE-CCCC-CCCCHHHHHHHHh
Confidence 21 1247899986 4331 1223345554443
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.3e-07 Score=80.21 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=60.6
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.++.+|..++..+.....++.+||+.||||.+|+.+|+.-.+|++++++ ++.++-|+.|++.|+++.
T Consensus 366 ~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~--~~aV~dA~~nA~~NgisN 432 (534)
T KOG2187|consen 366 SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEIS--PDAVEDAEKNAQINGISN 432 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecC--hhhcchhhhcchhcCccc
Confidence 3578889999888877788899999999999999999998899999999 569999999999999863
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.9e-07 Score=73.31 Aligned_cols=96 Identities=18% Similarity=0.010 Sum_probs=64.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCC--c-ceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--N-CRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~--~-~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||+||||+|.++..+++.. .+|+++|++ +++++.+++++...+. . .++ .+..++.... ..+.+||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid--~~vi~~a~~~~~~~~~~~~~~~v-~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDID--EKVIELSKKFLPSLAGSYDDPRV-DLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCC--HHHHHHHHHHhHhhcccccCCce-EEEECchHHHHHhCCCCccE
Confidence 34699999999999988887764 389999999 5699999998754321 1 111 1222332211 12458999
Q ss_pred EEEcCcCC---CCCC--hHHHHHHHHHhccCC
Q 030935 143 ILGADVFY---DASG--KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy---~~~~--~~~l~~~l~~~L~p~ 169 (169)
|++ |... .... ...+++.+++.|+|+
T Consensus 149 Ii~-D~~~~~~~~~~l~~~ef~~~~~~~L~pg 179 (270)
T TIGR00417 149 IIV-DSTDPVGPAETLFTKEFYELLKKALNED 179 (270)
T ss_pred EEE-eCCCCCCcccchhHHHHHHHHHHHhCCC
Confidence 997 4332 1122 467889999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.4e-07 Score=77.86 Aligned_cols=72 Identities=18% Similarity=0.112 Sum_probs=55.1
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEE
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMG 125 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~ 125 (169)
-+.....|.+++.......++ ++|||-||+|.+|+.+|+.+.+|+++|++ +++++.|++|++.|++. +.+..
T Consensus 178 N~~~~~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~--~~av~~A~~Na~~N~i~n~~f~~ 250 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIV--EEAVEDARENAKLNGIDNVEFIR 250 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES---HHHHHHHHHHHHHTT--SEEEEE
T ss_pred cHHHHHHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCC--HHHHHHHHHHHHHcCCCcceEEE
Confidence 344567777777776655444 89999999999999999999999999999 56999999999999986 34433
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-07 Score=69.17 Aligned_cols=75 Identities=12% Similarity=0.009 Sum_probs=49.6
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceE--EEEEcCCCCcCCCCC-CCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV--MGLTWGFLDASIFDL-NPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~--~~l~~~~~~~~~~~~-~fDlIi~sd~i 149 (169)
.|+|+.||.|.-++.+|+.+.+|+++|++ +..++.++.|++..|...++ ..-+|.+........ .+|+|++|.+.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid--~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDID--PERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES---HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECC--HHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 69999999999999999999999999999 67999999999999876443 333333322222212 28999987643
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-07 Score=70.92 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=68.0
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
.+....+....++|||||+|+|..++.+++.. .++++.|+ |.+++.+++ .-.++ +.-+++..+++ .
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl---p~v~~~~~~-----~~rv~---~~~gd~f~~~P-~ 158 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL---PEVIEQAKE-----ADRVE---FVPGDFFDPLP-V 158 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE----HHHHCCHHH-----TTTEE---EEES-TTTCCS-S
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc---Hhhhhcccc-----ccccc---cccccHHhhhc-c
Confidence 33333444455689999999999999998864 48999999 568888777 22233 44566654443 3
Q ss_pred CCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+|+++.+.++|+- +....+++.++++|+|+
T Consensus 159 -~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 159 -ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp -ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred -ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 9999999999865 44567999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.55 E-value=5e-07 Score=71.01 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=69.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+..++||||+|.|-++..++..-.+|.+||.|. .|.. .++..|..+ +...+|.+ .+.+||+|.|-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~--~Mr~----rL~~kg~~v-l~~~~w~~-----~~~~fDvIscLNvL 161 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASP--PMRW----RLSKKGFTV-LDIDDWQQ-----TDFKFDVISCLNVL 161 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCH--HHHH----HHHhCCCeE-Eehhhhhc-----cCCceEEEeehhhh
Confidence 556899999999999999999888999999994 4643 344455543 22234543 23589999999999
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
=-...+-.+++.++++|+|.
T Consensus 162 DRc~~P~~LL~~i~~~l~p~ 181 (265)
T PF05219_consen 162 DRCDRPLTLLRDIRRALKPN 181 (265)
T ss_pred hccCCHHHHHHHHHHHhCCC
Confidence 99999999999999999984
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-07 Score=77.69 Aligned_cols=96 Identities=21% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH---h--CCc-ceEEEEEcCCCCcC--CCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---N--KLN-CRVMGLTWGFLDAS--IFDLN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~---n--~~~-~~~~~l~~~~~~~~--~~~~~ 139 (169)
+.++||++|||+|..+..+++.+ .+|+++|++ +++++.+++|... | ..+ .++ .+..+|.... ..+.+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid--~~vi~~ar~~~~l~~~~~~~~~dprv-~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLD--PAMTELARTSPALRALNGGALDDPRV-TVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECC--HHHHHHHHhCCcchhhhccccCCCce-EEEEChHHHHHHhCCCC
Confidence 46799999999999999888875 489999999 5699999986422 2 111 122 2334443221 12358
Q ss_pred CcEEEEcCcCCCC-C-----ChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDA-S-----GKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~-~-----~~~~l~~~l~~~L~p~ 169 (169)
||+|++ |..... . ..+++++.+++.|+|+
T Consensus 374 fDvIi~-D~~~~~~~~~~~L~t~ef~~~~~~~L~pg 408 (521)
T PRK03612 374 FDVIIV-DLPDPSNPALGKLYSVEFYRLLKRRLAPD 408 (521)
T ss_pred CCEEEE-eCCCCCCcchhccchHHHHHHHHHhcCCC
Confidence 999998 433211 1 1246899999999986
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-07 Score=74.89 Aligned_cols=97 Identities=19% Similarity=0.028 Sum_probs=63.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHH---Hh--CCcceEEEEEcCCCCcC--CCCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCE---MN--KLNCRVMGLTWGFLDAS--IFDLNP 140 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~---~n--~~~~~~~~l~~~~~~~~--~~~~~f 140 (169)
..++||++|||+|.....+++.. .+|+++|++ +++++.|+..-. .+ ........+..++.... ....+|
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEID--peVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLD--GSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC--HHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 45699999999999888888765 489999999 569999996311 11 11111122334443221 123589
Q ss_pred cEEEEcCcCCCCC-----C-hHHHHHHHHHhccCC
Q 030935 141 NIILGADVFYDAS-----G-KICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~sd~iy~~~-----~-~~~l~~~l~~~L~p~ 169 (169)
|+|++ |+..... . -..+++.+++.|+|+
T Consensus 228 DVIIv-Dl~DP~~~~~~~LyT~EFy~~~~~~LkPg 261 (374)
T PRK01581 228 DVIII-DFPDPATELLSTLYTSELFARIATFLTED 261 (374)
T ss_pred cEEEE-cCCCccccchhhhhHHHHHHHHHHhcCCC
Confidence 99996 5422111 1 266899999999996
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.3e-06 Score=70.23 Aligned_cols=82 Identities=22% Similarity=0.251 Sum_probs=47.2
Q ss_pred CCeEEEECCCCC-HHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCC---CCcCCC--CCCCcE
Q 030935 71 GANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGF---LDASIF--DLNPNI 142 (169)
Q Consensus 71 ~~~vLElGcGtG-l~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~---~~~~~~--~~~fDl 142 (169)
..++||+|+|.- +..+..++ .|-++++||++ +..++.|++|++.| +++.++......+ ...... .+.||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID--~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDID--PKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES---HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCC--HHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence 457999999965 65776665 56799999999 56999999999999 8775544333222 222221 248999
Q ss_pred EEEcCcCCCCCC
Q 030935 143 ILGADVFYDASG 154 (169)
Q Consensus 143 Ii~sd~iy~~~~ 154 (169)
.+|+.++|....
T Consensus 181 tmCNPPFy~s~~ 192 (299)
T PF05971_consen 181 TMCNPPFYSSQE 192 (299)
T ss_dssp EEE-----SS--
T ss_pred EecCCccccChh
Confidence 999999996643
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.3e-07 Score=69.81 Aligned_cols=101 Identities=17% Similarity=0.146 Sum_probs=67.2
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC-
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI- 135 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~- 135 (169)
+|....+..+|.+|||-|.|+|.++.++++. | .+|+..|+. ++.++.|++|++.+++...+. +...+... .+
T Consensus 31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~--~~~~~~A~~n~~~~gl~~~v~-~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFR--EDRAEKARKNFERHGLDDNVT-VHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESS--HHHHHHHHHHHHHTTCCTTEE-EEES-GGCG--S
T ss_pred HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccC--HHHHHHHHHHHHHcCCCCCce-eEecceeccccc
Confidence 4444566779999999999999999999984 3 399999999 569999999999999863322 44444422 22
Q ss_pred --CCCCCcEEEEcCcCCCCCChHHHHHHHHHhc-cCC
Q 030935 136 --FDLNPNIILGADVFYDASGKICAFEILICSL-FPI 169 (169)
Q Consensus 136 --~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L-~p~ 169 (169)
.+..+|.|+. |+ .++-..+..+.++| +||
T Consensus 108 ~~~~~~~DavfL-Dl----p~Pw~~i~~~~~~L~~~g 139 (247)
T PF08704_consen 108 EELESDFDAVFL-DL----PDPWEAIPHAKRALKKPG 139 (247)
T ss_dssp TT-TTSEEEEEE-ES----SSGGGGHHHHHHHE-EEE
T ss_pred ccccCcccEEEE-eC----CCHHHHHHHHHHHHhcCC
Confidence 1347898885 44 44556667777777 553
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.8e-07 Score=69.50 Aligned_cols=100 Identities=16% Similarity=0.128 Sum_probs=70.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCC---cce-------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKL---NCR------------------- 122 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~---~~~------------------- 122 (169)
+.+.++.+||+||-+|.+++.+|+. |+ .|+++|+++ .+++.|++++...-- .+.
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~--~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~ 132 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDP--VLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNE 132 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccH--HHHHHHHHhccccccccccccCCCcccccccccccccccc
Confidence 4567889999999999999999985 55 699999995 599999999754210 000
Q ss_pred ------------------EEEEEcCCCCcCCCCCCCcEEEEcCcCC------CCCChHHHHHHHHHhccCC
Q 030935 123 ------------------VMGLTWGFLDASIFDLNPNIILGADVFY------DASGKICAFEILICSLFPI 169 (169)
Q Consensus 123 ------------------~~~l~~~~~~~~~~~~~fDlIi~sd~iy------~~~~~~~l~~~l~~~L~p~ 169 (169)
-..++-.++. ......||+|+|--+.- ...-+..+|+.|.++|.||
T Consensus 133 a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pg 202 (288)
T KOG2899|consen 133 ADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPG 202 (288)
T ss_pred ccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcC
Confidence 0001111111 11234899999977653 3355788999999999986
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.3e-06 Score=65.25 Aligned_cols=73 Identities=18% Similarity=0.206 Sum_probs=55.6
Q ss_pred CCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+.+||||||+|.++-++++. + +...+||++ |.+++..++.++.|+...++..-+ +...+..++.|+++-+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiN--p~A~~~Tl~TA~~n~~~~~~V~td---l~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDIN--PEALEATLETARCNRVHIDVVRTD---LLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCC--HHHHHHHHHHHHhcCCccceeehh---HHhhhccCCccEEEECC
Confidence 457999999999999999885 3 368999999 679999999999998775444333 22333447899998755
Q ss_pred c
Q 030935 148 V 148 (169)
Q Consensus 148 ~ 148 (169)
.
T Consensus 119 P 119 (209)
T KOG3191|consen 119 P 119 (209)
T ss_pred C
Confidence 4
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=71.81 Aligned_cols=91 Identities=20% Similarity=0.111 Sum_probs=71.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-CCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~sd 147 (169)
.|.+|||+-||.|-+++.+|+.|+. |+++|++ |.+++.+++|+++|+....+. ...|+..+.... ..+|-|+..-
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diN--P~A~~~L~eNi~LN~v~~~v~-~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDIN--PDAVEYLKENIRLNKVEGRVE-PILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecC--HHHHHHHHHHHHhcCccceee-EEeccHHHhhhccccCCEEEeCC
Confidence 5889999999999999999999985 9999999 679999999999999986644 334444333333 5799999877
Q ss_pred cCCCCCChHHHHHHHH
Q 030935 148 VFYDASGKICAFEILI 163 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~ 163 (169)
+-.....++..++.+.
T Consensus 265 p~~a~~fl~~A~~~~k 280 (341)
T COG2520 265 PKSAHEFLPLALELLK 280 (341)
T ss_pred CCcchhhHHHHHHHhh
Confidence 7665666666665554
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-07 Score=73.68 Aligned_cols=120 Identities=24% Similarity=0.278 Sum_probs=81.0
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh---CC--
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN---KL-- 119 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n---~~-- 119 (169)
..+|..+|++++.|..++.+++....+.++.++|||.++..+.+++..-.|...+.... +.-+...+...+ ..
T Consensus 65 ~~tg~~~w~~al~L~~~l~~~~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~--~~~~l~~~~~~~~~~~~~~ 142 (262)
T KOG2497|consen 65 ARTGLSVWESALSLEADLRDKPDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC--AGLLLEEIILLSRDLSLEV 142 (262)
T ss_pred HHhccccchHHHHHHHHHhhCcccccccchHhhccCHHHHHHHHHhcccceecCCccCc--HHHHHHHHHhccccccccc
Confidence 47899999999999999999998788999999999999999777776544444444432 222222222222 11
Q ss_pred cceEEEEEcCCCCc--CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 120 NCRVMGLTWGFLDA--SIFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 120 ~~~~~~l~~~~~~~--~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
..+...+.|..... ......+|+|+++|++|. ..+.++++++...|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL~ 191 (262)
T KOG2497|consen 143 RDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLLL 191 (262)
T ss_pred cccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHHH
Confidence 11222233332211 111235899999999999 888999988887653
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=67.52 Aligned_cols=120 Identities=15% Similarity=-0.009 Sum_probs=76.1
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH-HHH-HhC--Ccc-
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR-VCE-MNK--LNC- 121 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~-n~~-~n~--~~~- 121 (169)
++...-.....|.+|+.+ ....++.+||..|||.|.-.+.+|.+|.+|+++|++ +.+++.+.+ |.. .+. ...
T Consensus 15 ~~w~~~~~~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls--~~Ai~~~~~e~~~~~~~~~~~~~ 91 (218)
T PF05724_consen 15 TPWDQGEPNPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLS--PTAIEQAFEENNLEPTVTSVGGF 91 (218)
T ss_dssp -TT--TTSTHHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES---HHHHHHHHHHCTTEEECTTCTTE
T ss_pred CCCCCCCCCHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecC--HHHHHHHHHHhccCCCcccccce
Confidence 443333446778888876 233456799999999999999999999999999999 458877632 221 110 111
Q ss_pred e-----EEEEEcCCCCcCCCC--CCCcEEEEcCcCC--CCCChHHHHHHHHHhccCC
Q 030935 122 R-----VMGLTWGFLDASIFD--LNPNIILGADVFY--DASGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~-----~~~l~~~~~~~~~~~--~~fDlIi~sd~iy--~~~~~~~l~~~l~~~L~p~ 169 (169)
. -+.+..+++...... .+||+|+=.-++. .++.-+.-.+.+.++|+|+
T Consensus 92 ~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 92 KRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPG 148 (218)
T ss_dssp EEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEE
T ss_pred eeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCC
Confidence 0 123555665442222 2799999444443 5566788899999999885
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=71.23 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=76.1
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCH-HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH-h------CCc
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSL-PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-N------KLN 120 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl-~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~-n------~~~ 120 (169)
+.-|--+.++..|+.......++.+|||||||-|. +.-+....-..++++|++ ...++.|++..+. . ...
T Consensus 41 fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis--~~si~ea~~Ry~~~~~~~~~~~~~ 118 (331)
T PF03291_consen 41 FNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDIS--EESIEEARERYKQLKKRNNSKQYR 118 (331)
T ss_dssp HHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES---HHHHHHHHHHHHHHHTSTT-HTSE
T ss_pred HhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCC--HHHHHHHHHHHHHhcccccccccc
Confidence 45688899999988755444477899999999664 555655444589999999 5699998887722 1 111
Q ss_pred ce-EEEEEcCCCCc-----CCCC--CCCcEEEEcCcCCCC----CChHHHHHHHHHhccCC
Q 030935 121 CR-VMGLTWGFLDA-----SIFD--LNPNIILGADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ~~-~~~l~~~~~~~-----~~~~--~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
.. ......++... ...+ .+||+|-|--.+|+. +....+++.+...|+||
T Consensus 119 ~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~G 179 (331)
T PF03291_consen 119 FDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPG 179 (331)
T ss_dssp ECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred ccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Confidence 11 12223333221 1222 499999999999855 44667999999999986
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.2e-06 Score=63.82 Aligned_cols=95 Identities=15% Similarity=0.031 Sum_probs=69.0
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcc--eEEEEEcCCCCcCC------CCCCCcE
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC--RVMGLTWGFLDASI------FDLNPNI 142 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~--~~~~l~~~~~~~~~------~~~~fDl 142 (169)
+|||||||||--+..+|+.-. .-.-+|.++ ..+..++..+...+++. ....++......+. ...+||.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~--~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~ 105 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDD--NLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDA 105 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCCh--HHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcce
Confidence 699999999999999998654 677888884 46677777776665431 12334443321121 2458999
Q ss_pred EEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
|+|+.++|-. +..+.+|+...+.|+|+
T Consensus 106 i~~~N~lHI~p~~~~~~lf~~a~~~L~~g 134 (204)
T PF06080_consen 106 IFCINMLHISPWSAVEGLFAGAARLLKPG 134 (204)
T ss_pred eeehhHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 9999999944 56788999999999985
|
The function of this family is unknown. |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-05 Score=63.07 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcce
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~ 122 (169)
-+-+..+++.+..-+.||.++. .+.|++||=+| =-=+.|++++..+ ++|+++|+++ ++++.+++.++..+++++
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~g-dL~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDe--Rll~fI~~~a~~~gl~i~ 95 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAERG-DLEGKRILFLG-DDDLTSLALALTGLPKRITVVDIDE--RLLDFINRVAEEEGLPIE 95 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHTT--STT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-H--HHHHHHHHHHHHHT--EE
T ss_pred cccccccHHHHHHHHHHHHhcC-cccCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCH--HHHHHHHHHHHHcCCceE
Confidence 4568899999999999999875 46899999998 3347777777644 5899999995 599999999999999877
Q ss_pred EEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 123 VMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 123 ~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
....+..+...+....+||+++. |+.|..+-+.-++..-.++|+.
T Consensus 96 ~~~~DlR~~LP~~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~ 140 (243)
T PF01861_consen 96 AVHYDLRDPLPEELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKG 140 (243)
T ss_dssp EE---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-S
T ss_pred EEEecccccCCHHHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCC
Confidence 66666554433334469999995 9999999999999999888874
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.9e-06 Score=60.33 Aligned_cols=113 Identities=19% Similarity=0.131 Sum_probs=79.8
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
.+-|++-.+|+-|.+..+...|.-|||+|.|||.++-.+.++|. .+++++++ ++.+....+... ..++.+.
T Consensus 28 aI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~--~dF~~~L~~~~p----~~~ii~g 101 (194)
T COG3963 28 AILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYS--PDFVCHLNQLYP----GVNIING 101 (194)
T ss_pred eecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeC--HHHHHHHHHhCC----Ccccccc
Confidence 45688999999999988888899999999999999999999875 69999999 568776654332 2223333
Q ss_pred EcCCCC---cCCCCCCCcEEEEcCcCCCCCCh--HHHHHHHHHhccC
Q 030935 127 TWGFLD---ASIFDLNPNIILGADVFYDASGK--ICAFEILICSLFP 168 (169)
Q Consensus 127 ~~~~~~---~~~~~~~fDlIi~sd~iy~~~~~--~~l~~~l~~~L~p 168 (169)
+..+.. .......||.|||.=++-+.... -++++.+...|.+
T Consensus 102 da~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~ 148 (194)
T COG3963 102 DAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA 148 (194)
T ss_pred chhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC
Confidence 333322 12234589999998877655433 4466666666554
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.2e-07 Score=68.71 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=73.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
...++|||||-|.+.-.+...+. +++.+|.+ ..|++.++. ++.+++... .+.-++....+.++++|+||+|--+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS--~~M~~s~~~-~qdp~i~~~--~~v~DEE~Ldf~ens~DLiisSlsl 147 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTS--YDMIKSCRD-AQDPSIETS--YFVGDEEFLDFKENSVDLIISSLSL 147 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecc--hHHHHHhhc-cCCCceEEE--EEecchhcccccccchhhhhhhhhh
Confidence 35799999999999998888776 89999999 569988876 333444332 2222222224556799999999999
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
||..+++.-+..++..|||.
T Consensus 148 HW~NdLPg~m~~ck~~lKPD 167 (325)
T KOG2940|consen 148 HWTNDLPGSMIQCKLALKPD 167 (325)
T ss_pred hhhccCchHHHHHHHhcCCC
Confidence 99999999999999999994
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.2e-06 Score=65.15 Aligned_cols=89 Identities=16% Similarity=0.122 Sum_probs=62.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
.+.+.......++..|||+|+|.|.++..+++.+++|++++++ +++++.+++... ...+.+ +.++|......+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~~-~~~n~~---vi~~DaLk~d~~~ 92 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEID--RRLAEVLKERFA-PYDNLT---VINGDALKFDFPS 92 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeC--HHHHHHHHHhcc-cccceE---EEeCchhcCcchh
Confidence 4455555555567899999999999999999999999999999 469988887664 111222 4455544333333
Q ss_pred --CCcEEEEcCcCCCCCC
Q 030935 139 --NPNIILGADVFYDASG 154 (169)
Q Consensus 139 --~fDlIi~sd~iy~~~~ 154 (169)
.++.|++ .+-|+.+.
T Consensus 93 l~~~~~vVa-NlPY~Iss 109 (259)
T COG0030 93 LAQPYKVVA-NLPYNISS 109 (259)
T ss_pred hcCCCEEEE-cCCCcccH
Confidence 6788886 55665543
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1e-05 Score=63.95 Aligned_cols=101 Identities=12% Similarity=0.119 Sum_probs=65.8
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
.|-++-..+.++...+. .....+...|||+|-|||.++..+...|++|+++++++ .|+...++..+-...+...+ +
T Consensus 36 ~GQHilkNp~v~~~I~~-ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dp--rmvael~krv~gtp~~~kLq-V 111 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIVE-KADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDP--RMVAELEKRVQGTPKSGKLQ-V 111 (315)
T ss_pred cchhhhcCHHHHHHHHh-ccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCc--HHHHHHHHHhcCCCccceee-E
Confidence 44444444444444443 34455677999999999999999999999999999995 59998887775333323333 2
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDAS 153 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~ 153 (169)
..|+... .....||++|+ .+-|..+
T Consensus 112 ~~gD~lK-~d~P~fd~cVs-NlPyqIS 136 (315)
T KOG0820|consen 112 LHGDFLK-TDLPRFDGCVS-NLPYQIS 136 (315)
T ss_pred Eeccccc-CCCcccceeec-cCCcccc
Confidence 2344322 12237898886 4444443
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.3e-05 Score=65.52 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=52.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..+|.++|||||++|..+..++++|++|+++|..+ |-..+ . +.. ++..+.-..+.......++|+++| |
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~---l~~~L----~-~~~--~V~h~~~d~fr~~p~~~~vDwvVc-D 277 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP---MAQSL----M-DTG--QVEHLRADGFKFRPPRKNVDWLVC-D 277 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh---cCHhh----h-CCC--CEEEEeccCcccCCCCCCCCEEEE-e
Confidence 35788999999999999999999999999999763 33222 1 112 233333333221111458999998 6
Q ss_pred cCCCCCChHHHHHH
Q 030935 148 VFYDASGKICAFEI 161 (169)
Q Consensus 148 ~iy~~~~~~~l~~~ 161 (169)
++-.+.-...++..
T Consensus 278 mve~P~rva~lm~~ 291 (357)
T PRK11760 278 MVEKPARVAELMAQ 291 (357)
T ss_pred cccCHHHHHHHHHH
Confidence 66555444444433
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.7e-06 Score=66.15 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=68.6
Q ss_pred eEEEECCCCCHHHHHHHHhC----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC--CCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG--FLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~g----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~--~~~~~~~~~~fDlIi~s 146 (169)
+|||+|||.|-....+.+-. -.|.+.|.+ +++++..+.|...+...+.....+.. ....+.....+|+|.+-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfs--p~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFS--PRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCC--hHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 79999999998888877743 379999999 56999999887655433322222221 22233445689999876
Q ss_pred CcCC--CCCChHHHHHHHHHhccCC
Q 030935 147 DVFY--DASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy--~~~~~~~l~~~l~~~L~p~ 169 (169)
=++- +++.....++.|...||||
T Consensus 152 FvLSAi~pek~~~a~~nl~~llKPG 176 (264)
T KOG2361|consen 152 FVLSAIHPEKMQSVIKNLRTLLKPG 176 (264)
T ss_pred EEEeccChHHHHHHHHHHHHHhCCC
Confidence 6554 4567788999999999997
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=66.34 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--C-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--L-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||.||+|.|..+..+++.. .+|+++|++ +++++.+++....++ . +.++ .+..++.... ..+.+||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD--~~vv~lar~~~~~~~~~~~dprv-~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDID--QEVVDFCRKHLTVNREAFCDKRL-ELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHhcccccccccCCce-EEEEChhHHHHhhCCCCccE
Confidence 45689999999999998887753 389999999 569999999876542 1 1222 2334433221 12458999
Q ss_pred EEEcCcCCCCC--------ChHHHHH-HHHHhccCC
Q 030935 143 ILGADVFYDAS--------GKICAFE-ILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~--------~~~~l~~-~l~~~L~p~ 169 (169)
|+. |+. ++. .-..+++ .+++.|+|+
T Consensus 180 Ii~-D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~ 213 (336)
T PLN02823 180 IIG-DLA-DPVEGGPCYQLYTKSFYERIVKPKLNPG 213 (336)
T ss_pred EEe-cCC-CccccCcchhhccHHHHHHHHHHhcCCC
Confidence 996 542 221 1246787 899999985
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-05 Score=69.72 Aligned_cols=112 Identities=13% Similarity=0.062 Sum_probs=73.9
Q ss_pred cchHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHhC--------------------------------------
Q 030935 52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG-------------------------------------- 92 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~g-------------------------------------- 92 (169)
-|--..||.-|+..... ..+..++|-+||+|.+.+.+|..+
T Consensus 171 Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~ 250 (702)
T PRK11783 171 APLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARA 250 (702)
T ss_pred CCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhh
Confidence 34456777766655433 356789999999999999887631
Q ss_pred ------CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCCCCCcEEEEcCcCCCC----CChHHHH
Q 030935 93 ------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDLNPNIILGADVFYDA----SGKICAF 159 (169)
Q Consensus 93 ------a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~~~fDlIi~sd~iy~~----~~~~~l~ 159 (169)
.+++++|++ +.+++.++.|+..+++...+. +..++.... ....+||+|+++.+.-.. .....+.
T Consensus 251 ~~~~~~~~i~G~Did--~~av~~A~~N~~~~g~~~~i~-~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 251 GLAELPSKFYGSDID--PRVIQAARKNARRAGVAELIT-FEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred cccccCceEEEEECC--HHHHHHHHHHHHHcCCCcceE-EEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 269999999 569999999999999864332 334443221 112369999987555422 2344555
Q ss_pred HHHHHhc
Q 030935 160 EILICSL 166 (169)
Q Consensus 160 ~~l~~~L 166 (169)
+.+-+.|
T Consensus 328 ~~lg~~l 334 (702)
T PRK11783 328 SQLGRRL 334 (702)
T ss_pred HHHHHHH
Confidence 5544444
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.8e-05 Score=58.61 Aligned_cols=88 Identities=19% Similarity=0.258 Sum_probs=58.8
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
+++|+|+|.|++|+.+|-... +|+.+|...+ =+...+.-+..-+++ +++. .+..+......+||+|++--+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~K--K~~FL~~~~~~L~L~nv~v~---~~R~E~~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGK--KVAFLKEVVRELGLSNVEVI---NGRAEEPEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHH--HHHHHHHHHHHHT-SSEEEE---ES-HHHTTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCch--HHHHHHHHHHHhCCCCEEEE---EeeecccccCCCccEEEeehhc
Confidence 799999999999999887643 8999999853 444444444444454 3333 3333333455699999997654
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
.++.+++.....|+|+
T Consensus 126 ----~l~~l~~~~~~~l~~~ 141 (184)
T PF02527_consen 126 ----PLDKLLELARPLLKPG 141 (184)
T ss_dssp ----SHHHHHHHHGGGEEEE
T ss_pred ----CHHHHHHHHHHhcCCC
Confidence 5788888888877763
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.7e-06 Score=66.11 Aligned_cols=93 Identities=12% Similarity=0.066 Sum_probs=60.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---------CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---------ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
..++++|.+.....++.+|+|-.||+|.+-+.+.+. ..++++.|++ +.++..++.|+..++........
T Consensus 32 ~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~--~~~~~la~~nl~l~~~~~~~~~i 109 (311)
T PF02384_consen 32 REIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEID--PEAVALAKLNLLLHGIDNSNINI 109 (311)
T ss_dssp HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES---HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred HHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCc--HHHHHHHHhhhhhhccccccccc
Confidence 456667666655556778999999999988877662 3489999999 56999999998887765432224
Q ss_pred EcCCCCcCC-C--CCCCcEEEEcCcCC
Q 030935 127 TWGFLDASI-F--DLNPNIILGADVFY 150 (169)
Q Consensus 127 ~~~~~~~~~-~--~~~fDlIi~sd~iy 150 (169)
.+++..... . ..+||+|+++.++-
T Consensus 110 ~~~d~l~~~~~~~~~~~D~ii~NPPf~ 136 (311)
T PF02384_consen 110 IQGDSLENDKFIKNQKFDVIIGNPPFG 136 (311)
T ss_dssp EES-TTTSHSCTST--EEEEEEE--CT
T ss_pred cccccccccccccccccccccCCCCcc
Confidence 455543221 1 35899999987653
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.8e-05 Score=59.54 Aligned_cols=90 Identities=11% Similarity=-0.111 Sum_probs=64.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh--CC-cceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n--~~-~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++||=+|.|-|.....++|...+|+++|++ +++++.+++-+... .. +.++....|- ......+||+||.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID--~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~---~~~~~~~fDVIIv- 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQAD--EKILDSFISFFPHFHEVKNNKNFTHAKQL---LDLDIKKYDLIIC- 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECC--HHHHHHHHHHCHHHHHhhcCCCEEEeehh---hhccCCcCCEEEE-
Confidence 45799999999999999999986799999999 46999988843211 11 2233322221 1112358999995
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|..|. +.+++.++++|+|+
T Consensus 146 Ds~~~----~~fy~~~~~~L~~~ 164 (262)
T PRK00536 146 LQEPD----IHKIDGLKRMLKED 164 (262)
T ss_pred cCCCC----hHHHHHHHHhcCCC
Confidence 77654 67788999999985
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.9e-05 Score=60.92 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=60.2
Q ss_pred CCCC--eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh------CCcc-eEEEEEcCCCCcCC--CC
Q 030935 69 FSGA--NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN------KLNC-RVMGLTWGFLDASI--FD 137 (169)
Q Consensus 69 ~~~~--~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n------~~~~-~~~~l~~~~~~~~~--~~ 137 (169)
.+|. +|||+-+|+|..|+.++.+|++|+++|.+ +.+...+++|++.- +... ....+..++....+ ..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~--p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~ 162 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDIT 162 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCC
Confidence 3455 89999999999999999999999999999 55888899988763 1100 11233334322211 23
Q ss_pred CCCcEEEEcCcCCCCCChHH
Q 030935 138 LNPNIILGADVFYDASGKIC 157 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~ 157 (169)
..||+|.. |+.|-...-.+
T Consensus 163 ~~fDVVYl-DPMfp~~~ksa 181 (250)
T PRK10742 163 PRPQVVYL-DPMFPHKQKSA 181 (250)
T ss_pred CCCcEEEE-CCCCCCCcccc
Confidence 37999995 99997655444
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.7e-06 Score=61.88 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
...+-|||+|+|+++..+|+...+|++++.++ .-...+++|++.++.. ..+.. |+...--+ ++.|+|+|-.
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dP--k~a~~a~eN~~v~g~~n~evv~---gDA~~y~f-e~ADvvicEm 104 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDP--KRARLAEENLHVPGDVNWEVVV---GDARDYDF-ENADVVICEM 104 (252)
T ss_pred hhceeeccCCcchHHHHHHhhhceEEEEecCc--HHHHHhhhcCCCCCCcceEEEe---cccccccc-cccceeHHHH
Confidence 35899999999999999999966999999995 5889999999888764 23322 33222112 4678898743
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.3e-05 Score=59.03 Aligned_cols=107 Identities=14% Similarity=0.092 Sum_probs=69.8
Q ss_pred hHHHHHHHHHhccC--CCCCCeEEEECCCCCHHHHHHHHh-CC---eEEEEcCCCcHHHHHHHHHHHHHhC--------C
Q 030935 54 CSVILAEYVWQQRY--RFSGANVVELGAGTSLPGLVAAKV-GS---NVTLTDDSNRIEVLKNMRRVCEMNK--------L 119 (169)
Q Consensus 54 ~~~~La~~l~~~~~--~~~~~~vLElGcGtGl~~l~~a~~-ga---~V~~~D~~~~~~~l~~~~~n~~~n~--------~ 119 (169)
++..+-.++.+... ..+|.+.||+|+|||.++.+++.+ |+ .++++|.- +++++.+++|+...- +
T Consensus 64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~--~eLVe~Sk~nl~k~i~~~e~~~~~ 141 (237)
T KOG1661|consen 64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHI--PELVEYSKKNLDKDITTSESSSKL 141 (237)
T ss_pred cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhh--HHHHHHHHHHHHhhccCchhhhhh
Confidence 44444444444333 568999999999999999888864 33 45899988 679999999986542 1
Q ss_pred -cceEEEEEcCCCCcCCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 120 -NCRVMGLTWGFLDASIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 -~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+++. +.-|+-..... ..+||-|.+- +....+.+.+...|+|+
T Consensus 142 ~~~~l~-ivvGDgr~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~g 186 (237)
T KOG1661|consen 142 KRGELS-IVVGDGRKGYAEQAPYDAIHVG------AAASELPQELLDQLKPG 186 (237)
T ss_pred ccCceE-EEeCCccccCCccCCcceEEEc------cCccccHHHHHHhhccC
Confidence 12222 22444433222 3489999875 45566667777777764
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.2e-05 Score=59.47 Aligned_cols=109 Identities=20% Similarity=0.149 Sum_probs=72.4
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
..+-.+++.|...+....-..+|+.|||+|+-||.++..+.+.|| +|+++|...+ -+.. .++ + +.++..+.
T Consensus 58 ~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~--Ql~~---kLR-~--d~rV~~~E 129 (245)
T COG1189 58 PYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYG--QLHW---KLR-N--DPRVIVLE 129 (245)
T ss_pred CccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCC--ccCH---hHh-c--CCcEEEEe
Confidence 445567889999998887778999999999999999999999998 7999999864 2211 111 1 22333343
Q ss_pred cCCCCc---CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 128 WGFLDA---SIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 128 ~~~~~~---~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
-.+... ......+|+|++ |+=| -++..++..+...++|
T Consensus 130 ~tN~r~l~~~~~~~~~d~~v~-DvSF--ISL~~iLp~l~~l~~~ 170 (245)
T COG1189 130 RTNVRYLTPEDFTEKPDLIVI-DVSF--ISLKLILPALLLLLKD 170 (245)
T ss_pred cCChhhCCHHHcccCCCeEEE-Eeeh--hhHHHHHHHHHHhcCC
Confidence 333321 122337889997 4433 2355566666666655
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.04 E-value=4.1e-05 Score=59.01 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=58.3
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCC-CcEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLN-PNIILGA 146 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~-fDlIi~s 146 (169)
+++++|+|+|.|++|+.+|-.. .+|+.+|...+ =+...+.-.+.-+++ +++. .+..+......+ ||+|.|-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~K--k~~FL~~~~~eL~L~nv~i~---~~RaE~~~~~~~~~D~vtsR 142 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGK--KIAFLREVKKELGLENVEIV---HGRAEEFGQEKKQYDVVTSR 142 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCch--HHHHHHHHHHHhCCCCeEEe---hhhHhhcccccccCcEEEee
Confidence 6899999999999999988543 37999999864 344444444444444 3333 233322222224 9999986
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
-+ ..+..+++.+...+++
T Consensus 143 Av----a~L~~l~e~~~pllk~ 160 (215)
T COG0357 143 AV----ASLNVLLELCLPLLKV 160 (215)
T ss_pred hc----cchHHHHHHHHHhccc
Confidence 53 5577788887777776
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=60.12 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=60.7
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHHHHH-------H
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCE-------M 116 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~n~~-------~ 116 (169)
.||=..++. +++.+ ......++...+|||||.|-+-+.+|. .+. +++++++.+ ...+.++.+.+ .
T Consensus 22 ~YGEi~~~~---~~~il-~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~--~~~~~a~~~~~~~~~~~~~ 95 (205)
T PF08123_consen 22 TYGEISPEF---VSKIL-DELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILP--ELHDLAEELLEELKKRMKH 95 (205)
T ss_dssp CGGGCHHHH---HHHHH-HHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SH--HHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCHHH---HHHHH-HHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEech--HHHHHHHHHHHHHHHHHHH
Confidence 455554443 23333 333455677999999999988776654 555 699999995 45554444332 2
Q ss_pred hCCcceEEEEEcCCCCcCCC-C---CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 117 NKLNCRVMGLTWGFLDASIF-D---LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 117 n~~~~~~~~l~~~~~~~~~~-~---~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+....-..+..+++..... . ..-|+|+++..+|.++....+ +.+...||||
T Consensus 96 ~g~~~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G 151 (205)
T PF08123_consen 96 YGKRPGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPG 151 (205)
T ss_dssp CTB---EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT
T ss_pred hhcccccceeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCC
Confidence 33333333455666543211 1 257999999999977766666 4555667775
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-05 Score=55.54 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=44.2
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWG 129 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~ 129 (169)
.+||+|||.|..++.+++.+. +|+++|.+ +.+++.+++|++.|+.. +.+.....+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~--~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPL--PDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecC--HHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 489999999999999998876 69999999 56999999999988753 344333333
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.6e-05 Score=55.40 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=39.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHH------hCCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 69 FSGANVVELGAGTSLPGLVAAK------VGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~------~ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.+...|+|+|||.|.+|..++. .+.+|+++|.++ ..++.+++..+..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~--~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNE--SLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCc--HHHHHHHHHHHHhc
Confidence 4567899999999999999988 345999999995 48887777766554
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.7e-05 Score=62.27 Aligned_cols=111 Identities=20% Similarity=0.134 Sum_probs=72.2
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhC-------Ccce
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK-------LNCR 122 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~-------~~~~ 122 (169)
-|--+.++-.|+. ++..+++||||-|.=.+---+.|. .++++|+.+. .++.|+..-+... ....
T Consensus 104 NwIKs~LI~~y~~------~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAev--SI~qa~~RYrdm~~r~~~~~f~a~ 175 (389)
T KOG1975|consen 104 NWIKSVLINLYTK------RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEV--SINQARKRYRDMKNRFKKFIFTAV 175 (389)
T ss_pred HHHHHHHHHHHhc------cccccceeccCCcccHhHhhhhcccceEeeehhhc--cHHHHHHHHHHHHhhhhcccceeE
Confidence 3444444444432 567899999999977666666665 7999999965 8888887654321 1122
Q ss_pred EEEEEcCCCC--c--CCCCCCCcEEEEcCcCCCC----CChHHHHHHHHHhccCC
Q 030935 123 VMGLTWGFLD--A--SIFDLNPNIILGADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~--~--~~~~~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
+...+..... . +..+.+||+|-|-=++|+. +...-+++.+...|+||
T Consensus 176 f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpG 230 (389)
T KOG1975|consen 176 FIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPG 230 (389)
T ss_pred EEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCC
Confidence 2222221100 0 1123359999999888754 55677999999999997
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.2e-05 Score=58.58 Aligned_cols=96 Identities=15% Similarity=-0.036 Sum_probs=69.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCC-CCcEEE--E
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDL-NPNIIL--G 145 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~-~fDlIi--~ 145 (169)
..+||||||.|-.-+.+|+... .++++|+.. ..+..+.+.+...++ ++++...+.........+. +.|=|. -
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~--~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRV--PGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEeh--HHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC
Confidence 4799999999999999999876 699999995 478888888888888 6665555544444444444 666554 3
Q ss_pred cCcCCCC------CChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
.|+-+-. -..+.+++.+++.|+|+
T Consensus 128 PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~g 157 (227)
T COG0220 128 PDPWPKKRHHKRRLTQPEFLKLYARKLKPG 157 (227)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHccCC
Confidence 4444421 12588999999999986
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.1e-05 Score=59.72 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=65.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...+++.+.+..+..++..|||+|+|+|.++..+++.+.+|+++|.+ +++++.+++... ...++++..-+.-.+...
T Consensus 15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d--~~~~~~L~~~~~-~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEID--PDLAKHLKERFA-SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESS--HHHHHHHHHHCT-TCSSEEEEES-TTTSCGG
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCc--HhHHHHHHHHhh-hcccceeeecchhccccH
Confidence 44556666666555578899999999999999999999999999999 568888887665 233333333222222111
Q ss_pred C-CCCCCcEEEEcCcCCCCCChHHHHHHHH
Q 030935 135 I-FDLNPNIILGADVFYDASGKICAFEILI 163 (169)
Q Consensus 135 ~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~ 163 (169)
. .......|+++ +-|+. -.+++..+.
T Consensus 92 ~~~~~~~~~vv~N-lPy~i--s~~il~~ll 118 (262)
T PF00398_consen 92 DLLKNQPLLVVGN-LPYNI--SSPILRKLL 118 (262)
T ss_dssp GHCSSSEEEEEEE-ETGTG--HHHHHHHHH
T ss_pred HhhcCCceEEEEE-ecccc--hHHHHHHHh
Confidence 0 11244577765 55532 234444444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.94 E-value=9e-06 Score=61.91 Aligned_cols=94 Identities=21% Similarity=0.127 Sum_probs=53.7
Q ss_pred CCeEEEECCCCCH--HHH--HHHHh-----C--CeEEEEcCCCcHHHHHHHHHHHH----HhCC----------------
Q 030935 71 GANVVELGAGTSL--PGL--VAAKV-----G--SNVTLTDDSNRIEVLKNMRRVCE----MNKL---------------- 119 (169)
Q Consensus 71 ~~~vLElGcGtGl--~~l--~~a~~-----g--a~V~~~D~~~~~~~l~~~~~n~~----~n~~---------------- 119 (169)
.-+|+-.||+||- .|+ .+... + .+|++||++ +.+++.|++-+- ..++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~--~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~ 109 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDIS--PSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG 109 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES---HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECC--HHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence 3489999999993 333 33331 2 289999999 569988875320 0011
Q ss_pred ---------cceEEEEEcCCCCc-CCCCCCCcEEEEcCcC-C-CCCChHHHHHHHHHhccCC
Q 030935 120 ---------NCRVMGLTWGFLDA-SIFDLNPNIILGADVF-Y-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ---------~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~i-y-~~~~~~~l~~~l~~~L~p~ 169 (169)
.++ +...+... .....+||+|+|..|+ | +.+....+++.+++.|+||
T Consensus 110 ~~v~~~lr~~V~---F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pg 168 (196)
T PF01739_consen 110 YRVKPELRKMVR---FRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPG 168 (196)
T ss_dssp TTE-HHHHTTEE---EEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEE
T ss_pred eeEChHHcCceE---EEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCC
Confidence 122 22333333 2334599999999977 3 3355688999999999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.1e-05 Score=62.47 Aligned_cols=56 Identities=7% Similarity=-0.108 Sum_probs=43.8
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
.+-+.+.....++..+||.+||.|.-+..+++.. .+|+++|.+ +++++.+++++..
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D--~~al~~ak~~L~~ 66 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRD--PDAIAAAKDRLKP 66 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCC--HHHHHHHHHhhcc
Confidence 3333333334467799999999999999998874 489999999 6799999988754
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0001 Score=58.64 Aligned_cols=97 Identities=16% Similarity=0.100 Sum_probs=63.9
Q ss_pred CCeEEEECCCCC----HHHHHHHHhC-------CeEEEEcCCCcHHHHHHHHHHHHH-----hCC-------------c-
Q 030935 71 GANVVELGAGTS----LPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEM-----NKL-------------N- 120 (169)
Q Consensus 71 ~~~vLElGcGtG----l~~l~~a~~g-------a~V~~~D~~~~~~~l~~~~~n~~~-----n~~-------------~- 120 (169)
.-+|+-.||+|| -+++.+...+ .+|++||++. .+++.|+.-+-. .++ +
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~--~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDL--SVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCH--HHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 458999999999 3444444432 2799999994 599888743211 111 0
Q ss_pred -c-------eEEEEEcCCCCcCC-CCCCCcEEEEcCcC-C-CCCChHHHHHHHHHhccCC
Q 030935 121 -C-------RVMGLTWGFLDASI-FDLNPNIILGADVF-Y-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 121 -~-------~~~~l~~~~~~~~~-~~~~fDlIi~sd~i-y-~~~~~~~l~~~l~~~L~p~ 169 (169)
. +...+.+.+..... ...+||+|+|-+|+ | +.+....+++.++..|+||
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPG 234 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCC
Confidence 0 11223344443333 55689999999976 5 4466688999999999996
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.8e-05 Score=61.48 Aligned_cols=100 Identities=14% Similarity=0.040 Sum_probs=69.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~~fDlI 143 (169)
..+|.+|||-+.|-|..++.++++|| +|+-++.+++ +++.++-|=-..++.-....+..|+..+ .+.+.+||+|
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~--VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN--VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCC--eEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE
Confidence 34789999999999999999999999 8999999965 8888776643223321123344555433 4456689999
Q ss_pred EEcCcCCCCC-C--hHHHHHHHHHhccCC
Q 030935 144 LGADVFYDAS-G--KICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~-~--~~~l~~~l~~~L~p~ 169 (169)
|--.+=+..+ . -+.|.+-+++.|+||
T Consensus 210 iHDPPRfS~AgeLYseefY~El~RiLkrg 238 (287)
T COG2521 210 IHDPPRFSLAGELYSEEFYRELYRILKRG 238 (287)
T ss_pred eeCCCccchhhhHhHHHHHHHHHHHcCcC
Confidence 9544433321 1 366888888888886
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=3.4e-05 Score=64.78 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=54.8
Q ss_pred eEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCCCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~i 149 (169)
-|||+|+|||++++++++.|+ .|++++.-+ .|...+++-...|+.+.++..+.-...+-... ..+-|+++..++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~Evfk--PM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fd 145 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFK--PMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFD 145 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhc--hHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhh
Confidence 489999999999999999999 799999985 49999999889998876554443322111111 2356777765543
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.5e-05 Score=64.76 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=52.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC----------CeEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCc-----
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG----------SNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA----- 133 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g----------a~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~----- 133 (169)
...+|||.|||+|.+.+.++... .++++.|++ +.++..++.|+...+ ....+. +++...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId--~~a~~~a~~~l~~~~~~~~~i~---~~d~l~~~~~~ 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADID--KTLLKRAKKLLGEFALLEINVI---NFNSLSYVLLN 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechh--HHHHHHHHHHHhhcCCCCceee---ecccccccccc
Confidence 34589999999999988777632 368999999 569999999987665 222222 222111
Q ss_pred -CCCCCCCcEEEEcCcCC
Q 030935 134 -SIFDLNPNIILGADVFY 150 (169)
Q Consensus 134 -~~~~~~fDlIi~sd~iy 150 (169)
.....+||+||++.+.=
T Consensus 106 ~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 106 IESYLDLFDIVITNPPYG 123 (524)
T ss_pred cccccCcccEEEeCCCcc
Confidence 11124899999988764
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.3e-05 Score=56.86 Aligned_cols=95 Identities=18% Similarity=0.013 Sum_probs=59.5
Q ss_pred eEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcC-CCCCCCcEEE--Ec
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDAS-IFDLNPNIIL--GA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~-~~~~~fDlIi--~s 146 (169)
.+||||||.|-..+.+|+... .++++|+. ...+..+.+.+...+++. .+...+....... ..+.++|-|. ..
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~--~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIR--KKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES---HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecc--hHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 799999999999998888654 89999999 458888888887777753 3322222221111 2235666665 33
Q ss_pred CcCCCC------CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
|+-.-. -.-+++++.+++.|+||
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~g 126 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPG 126 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCC
Confidence 443211 13578999999999885
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.5e-05 Score=54.89 Aligned_cols=69 Identities=13% Similarity=-0.073 Sum_probs=51.0
Q ss_pred EEEcCCCcHHHHHHHHHHHHHhCC----cceEEEEEcCCCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 96 TLTDDSNRIEVLKNMRRVCEMNKL----NCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 96 ~~~D~~~~~~~l~~~~~n~~~n~~----~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++|.+ ++|++.++++.+..+. ++++. .++... +..+.+||+|+++.++++..+...+++.+++.||||
T Consensus 1 ~GvD~S--~~ML~~A~~~~~~~~~~~~~~i~~~---~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpG 74 (160)
T PLN02232 1 MGLDFS--SEQLAVAATRQSLKARSCYKCIEWI---EGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPG 74 (160)
T ss_pred CeEcCC--HHHHHHHHHhhhcccccCCCceEEE---EechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcC
Confidence 478999 5699999877653221 23333 333322 344558999999999999999999999999999996
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=62.89 Aligned_cols=86 Identities=10% Similarity=0.032 Sum_probs=58.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+|...+..+.. ...+|.+|||++||.|.=+..+|.. + ..|++.|+++ .-++.+++|+++.++.. +....+..
T Consensus 99 sS~l~~~~L~~--~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~--~R~~~L~~nl~r~G~~n-v~v~~~D~ 173 (470)
T PRK11933 99 SSMLPVAALFA--DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSA--SRVKVLHANISRCGVSN-VALTHFDG 173 (470)
T ss_pred HHHHHHHHhcc--CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHcCCCe-EEEEeCch
Confidence 44444444432 2347789999999999999888774 2 3899999995 58899999999988764 22222221
Q ss_pred C-CcCCCCCCCcEEE
Q 030935 131 L-DASIFDLNPNIIL 144 (169)
Q Consensus 131 ~-~~~~~~~~fDlIi 144 (169)
. .....+..||.|+
T Consensus 174 ~~~~~~~~~~fD~IL 188 (470)
T PRK11933 174 RVFGAALPETFDAIL 188 (470)
T ss_pred hhhhhhchhhcCeEE
Confidence 1 1112345799999
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0002 Score=57.47 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=65.9
Q ss_pred CeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--CcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
++||-||-|.|.....+++.. .+++++|++ +.+++.+++-+..-. .......+..++-.+.. .+.+||+||.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID--~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEID--PAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcC--HHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 599999999999999999987 489999999 569999988764332 11112223334432211 2238999995
Q ss_pred cCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 146 ADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
|+.=.... -..+++.++++|+|+
T Consensus 156 -D~tdp~gp~~~Lft~eFy~~~~~~L~~~ 183 (282)
T COG0421 156 -DSTDPVGPAEALFTEEFYEGCRRALKED 183 (282)
T ss_pred -cCCCCCCcccccCCHHHHHHHHHhcCCC
Confidence 54433221 378999999999985
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00012 Score=56.24 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=48.9
Q ss_pred EEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 74 VVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
|.|+||--|.+++.+.+.|. +++++|++ +..++.|++|++.+++..++. ...++-...+.+. ..|.|+-+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~--~gpL~~A~~~i~~~~l~~~i~-~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDIN--PGPLEKAKENIAKYGLEDRIE-VRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTT-TTTEE-EEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCcccEE-EEECCcccccCCCCCCCEEEEe
Confidence 68999999999999999987 79999999 569999999999998775544 3344433333333 36776643
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.8e-05 Score=53.38 Aligned_cols=51 Identities=16% Similarity=0.185 Sum_probs=45.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
..++++|+|+|++.|-.++.++.+|| +|++.+.++ .+.+..++|++.|++-
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~--kl~k~~een~k~nnI~ 77 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEE--KLRKKWEEVCAYFNIC 77 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCH--HHHHHHHHHhhhheee
Confidence 46899999999999999999999999 799999995 5999999999988653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.1e-05 Score=61.04 Aligned_cols=96 Identities=18% Similarity=0.007 Sum_probs=61.8
Q ss_pred CeEEEECCCCCH----HHHHHHHhC------CeEEEEcCCCcHHHHHHHHHHHHH----hCC------------------
Q 030935 72 ANVVELGAGTSL----PGLVAAKVG------SNVTLTDDSNRIEVLKNMRRVCEM----NKL------------------ 119 (169)
Q Consensus 72 ~~vLElGcGtGl----~~l~~a~~g------a~V~~~D~~~~~~~l~~~~~n~~~----n~~------------------ 119 (169)
-+|+-.||.||- +++.+.... .+|++||++ +.+++.|++-+-. .++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs--~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDID--TEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECC--HHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 589999999993 333343321 379999999 4699988865311 000
Q ss_pred ----c--c-eEEEEEcCCCCcC-C-CCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 120 ----N--C-RVMGLTWGFLDAS-I-FDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ----~--~-~~~~l~~~~~~~~-~-~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
. + ....+...+.... . ...+||+|+|..++.+. +....+++.+++.|+||
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pg 255 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPD 255 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCC
Confidence 0 0 0112333333331 1 23589999998877443 56789999999999997
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.4e-05 Score=57.19 Aligned_cols=123 Identities=11% Similarity=-0.042 Sum_probs=70.9
Q ss_pred ccCCcceeecchHHHHHHHHHhccCC-----CCCCeEEEECCCCCHHHHHH-HHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 43 MKEEYGLFVWPCSVILAEYVWQQRYR-----FSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 43 ~~~~~g~~~W~~~~~La~~l~~~~~~-----~~~~~vLElGcGtGl~~l~~-a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
|-+++|...=+.-.-=..||.+.... ....++||.|||.|.++-.+ .+...+|.++|.. +..++.|++.+..
T Consensus 23 MLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~--~~Fl~~a~~~l~~ 100 (218)
T PF05891_consen 23 MLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPV--EKFLEQAKEYLGK 100 (218)
T ss_dssp HTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES---HHHHHHHHHHTCC
T ss_pred cccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccC--HHHHHHHHHHhcc
Confidence 33455533333333333455543222 23458999999999999855 4455589999999 5699999876654
Q ss_pred hCCcceEEEEEcCCCCcCCC-CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 117 NKLNCRVMGLTWGFLDASIF-DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 117 n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.... +.....-.+....+ +.+||+|++-=|+=|. .++-.+++.++++|+|+
T Consensus 101 ~~~~--v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~ 154 (218)
T PF05891_consen 101 DNPR--VGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPN 154 (218)
T ss_dssp GGCC--EEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEE
T ss_pred cCCC--cceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCC
Confidence 2222 22222111111112 3599999998887655 56788999999999984
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00044 Score=55.31 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=58.1
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-C-cCCCCCCCc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-D-ASIFDLNPN 141 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-~-~~~~~~~fD 141 (169)
+.+..++|||+|||+|....++... + .+++++|.+ +.|++.++.-++.. .... ...|... . ....-.+.|
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s--~~~~~l~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~D 104 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRS--PEMLELAKRLLRAG-PNNR--NAEWRRVLYRDFLPFPPDD 104 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCC--HHHHHHHHHHHhcc-cccc--cchhhhhhhcccccCCCCc
Confidence 4567789999999999755544442 2 279999999 56888877754422 2211 1112111 0 111112449
Q ss_pred EEEEcCcCCCCCC--hHHHHHHHHHhccC
Q 030935 142 IILGADVFYDASG--KICAFEILICSLFP 168 (169)
Q Consensus 142 lIi~sd~iy~~~~--~~~l~~~l~~~L~p 168 (169)
+|+++.++-.... ...+++.+.+.+++
T Consensus 105 Lvi~s~~L~EL~~~~r~~lv~~LW~~~~~ 133 (274)
T PF09243_consen 105 LVIASYVLNELPSAARAELVRSLWNKTAP 133 (274)
T ss_pred EEEEehhhhcCCchHHHHHHHHHHHhccC
Confidence 9999999986655 34455555554543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=55.05 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+|.+||++|-|.|++.-.+..+.. +=+.++.. |++++..|.+.-...-++.+..-.|.+....+.+..||-|+- |
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~h--p~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~y-D 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAH--PDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYY-D 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecC--HHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEe-e
Confidence 4788999999999999888776654 55667777 679999998875555566677788998877777788999884 5
Q ss_pred cC-CCCCChHHHHHHHHHhccCC
Q 030935 148 VF-YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~i-y~~~~~~~l~~~l~~~L~p~ 169 (169)
.. -+-+++..+.+.+.++|||+
T Consensus 177 Ty~e~yEdl~~~hqh~~rLLkP~ 199 (271)
T KOG1709|consen 177 TYSELYEDLRHFHQHVVRLLKPE 199 (271)
T ss_pred chhhHHHHHHHHHHHHhhhcCCC
Confidence 55 34467888999999999995
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0015 Score=44.81 Aligned_cols=91 Identities=22% Similarity=0.130 Sum_probs=54.7
Q ss_pred EEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCC-CCCcEEEEcCc
Q 030935 74 VVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFD-LNPNIILGADV 148 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~-~~fDlIi~sd~ 148 (169)
++|+|||+|... .+++.. ..++++|.+ +.++...+......... ......+......+... ..||++.....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLS--PEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCC--HHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeee
Confidence 999999999877 444433 378889998 45777644443322111 22332332221122233 37999944444
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
.++.. ....+..+.+.|+|
T Consensus 129 ~~~~~-~~~~~~~~~~~l~~ 147 (257)
T COG0500 129 LHLLP-PAKALRELLRVLKP 147 (257)
T ss_pred hhcCC-HHHHHHHHHHhcCC
Confidence 44444 88899999998887
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00081 Score=55.87 Aligned_cols=91 Identities=7% Similarity=-0.068 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-----------------------------------------
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------- 93 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga----------------------------------------- 93 (169)
-..||.=|........+..++|-=||+|.+.+.+|..+.
T Consensus 176 ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~ 255 (381)
T COG0116 176 KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELP 255 (381)
T ss_pred hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccc
Confidence 455666666555555667899999999999999998774
Q ss_pred eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-CCCcEEEEcCc
Q 030935 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-LNPNIILGADV 148 (169)
Q Consensus 94 ~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~sd~ 148 (169)
.+++.|++ +++++.|+.|+...|+...+. +...+......+ ..+|+|||+.+
T Consensus 256 ~~~G~Did--~r~i~~Ak~NA~~AGv~d~I~-f~~~d~~~l~~~~~~~gvvI~NPP 308 (381)
T COG0116 256 IIYGSDID--PRHIEGAKANARAAGVGDLIE-FKQADATDLKEPLEEYGVVISNPP 308 (381)
T ss_pred eEEEecCC--HHHHHHHHHHHHhcCCCceEE-EEEcchhhCCCCCCcCCEEEeCCC
Confidence 27799999 569999999999999875433 333332211112 58999998554
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00016 Score=56.86 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=62.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCC---cceEEEEEcCCCCc---CCCCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL---NCRVMGLTWGFLDA---SIFDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~---~~~~~~l~~~~~~~---~~~~~~fD 141 (169)
+.++||=||-|.|.....+.+.. .+|+++|++ +.+++.+++-...... +.++. +..++-.. .....+||
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD--~~Vv~~a~~~f~~~~~~~~d~r~~-i~~~Dg~~~l~~~~~~~yD 152 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEID--PEVVELARKYFPEFSEGLDDPRVR-IIIGDGRKFLKETQEEKYD 152 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES---HHHHHHHHHHTHHHHTTGGSTTEE-EEESTHHHHHHTSSST-EE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecC--hHHHHHHHHhchhhccccCCCceE-EEEhhhHHHHHhccCCccc
Confidence 56899999999999999888865 489999999 6799999887654321 12222 33343221 22222899
Q ss_pred EEEEcCcCC---CCC--ChHHHHHHHHHhccCC
Q 030935 142 IILGADVFY---DAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy---~~~--~~~~l~~~l~~~L~p~ 169 (169)
+|+. |+.- ... .-.++++.+++.|+|+
T Consensus 153 vIi~-D~~dp~~~~~~l~t~ef~~~~~~~L~~~ 184 (246)
T PF01564_consen 153 VIIV-DLTDPDGPAPNLFTREFYQLCKRRLKPD 184 (246)
T ss_dssp EEEE-ESSSTTSCGGGGSSHHHHHHHHHHEEEE
T ss_pred EEEE-eCCCCCCCcccccCHHHHHHHHhhcCCC
Confidence 9996 4433 111 1368999999999874
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=52.51 Aligned_cols=96 Identities=18% Similarity=0.037 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC------------------------------
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL------------------------------ 119 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~------------------------------ 119 (169)
...+||==|||.|.++..+|++|..|.+.|.|- -|+ +-.|.-+|..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~--~Ml--l~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSY--FML--LASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccceEEEEEchH--HHH--HHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 456899999999999999999999999999993 243 2222322210
Q ss_pred c----------ceEEEEEcCCCCcCCCC----CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 120 N----------CRVMGLTWGFLDASIFD----LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ~----------~~~~~l~~~~~~~~~~~----~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ ..-..+.+|++.+...+ .+||.|+..=.|=...++-.-+++|...||||
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPG 195 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccC
Confidence 0 01123555665443222 48999998733334466788999999999996
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00017 Score=55.64 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=59.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-----CCCCcEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-----DLNPNIIL 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-----~~~fDlIi 144 (169)
.-..|+|.-||.|.-.+..|.++..|+++|++ |.=+..|++|++..|++.+ ..+..|++..... ...+|+|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiD--PikIa~AkhNaeiYGI~~r-ItFI~GD~ld~~~~lq~~K~~~~~vf 170 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDID--PVKIACARHNAEVYGVPDR-ITFICGDFLDLASKLKADKIKYDCVF 170 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEecc--HHHHHHHhccceeecCCce-eEEEechHHHHHHHHhhhhheeeeee
Confidence 34589999999999999999999999999999 5689999999999999864 3466666543221 22466887
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+...
T Consensus 171 ~sppw 175 (263)
T KOG2730|consen 171 LSPPW 175 (263)
T ss_pred cCCCC
Confidence 76654
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0052 Score=48.94 Aligned_cols=97 Identities=13% Similarity=-0.021 Sum_probs=64.1
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcce--EEEEEcCCCCcCCCC
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCR--VMGLTWGFLDASIFD 137 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~--~~~l~~~~~~~~~~~ 137 (169)
.+..+..+|.+|||-|.|+|-++.++++.-+ ++.-.|+.+ .-.+.+++-.+.+++... +..-+....--...+
T Consensus 98 ~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~--~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks 175 (314)
T KOG2915|consen 98 LSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHE--TRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKS 175 (314)
T ss_pred HHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecH--HHHHHHHHHHHHhCCCcceEEEEeecccCCccccc
Confidence 3344566899999999999999999999643 899999984 467778888888887532 332222211112224
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHH
Q 030935 138 LNPNIILGADVFYDASGKICAFEIL 162 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l 162 (169)
..+|.|+. |+.--...++.+.+.+
T Consensus 176 ~~aDaVFL-DlPaPw~AiPha~~~l 199 (314)
T KOG2915|consen 176 LKADAVFL-DLPAPWEAIPHAAKIL 199 (314)
T ss_pred cccceEEE-cCCChhhhhhhhHHHh
Confidence 57888875 6655445555555543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0015 Score=56.53 Aligned_cols=98 Identities=11% Similarity=-0.005 Sum_probs=63.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCCCCCCcEEE--
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIFDLNPNIIL-- 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~~~~fDlIi-- 144 (169)
.+..+||||||.|-..+.+|+... .++++|+.. ..+..+.+.+...++.. .+...+.......+.+.++|-|.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~--~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYL--NGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeH--HHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 456899999999999999888765 799999995 46666666666666642 22211211111223345677665
Q ss_pred EcCcCCCC------CChHHHHHHHHHhccCC
Q 030935 145 GADVFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
..|+-+-. =..+.+++.+++.|+||
T Consensus 425 FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~g 455 (506)
T PRK01544 425 FPDPWIKNKQKKKRIFNKERLKILQDKLKDN 455 (506)
T ss_pred CCCCCCCCCCccccccCHHHHHHHHHhcCCC
Confidence 34454321 12578999999999986
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00031 Score=57.41 Aligned_cols=82 Identities=18% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHH-------HHHHHHHHhCCcceEEEEEcCCCCc-CCC-CC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK-------NMRRVCEMNKLNCRVMGLTWGFLDA-SIF-DL 138 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~-------~~~~n~~~n~~~~~~~~l~~~~~~~-~~~-~~ 138 (169)
..+|+.|.|=-.|||.+-+.+|..|+-|+++|++-+ ++. +++.|.+..+...++..+.-.+... ++. ..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr--~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~ 283 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYR--TVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNL 283 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchh--eeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcc
Confidence 447889999999999999999999999999999953 665 6788888888654433222233222 222 34
Q ss_pred CCcEEEEcCcCCCC
Q 030935 139 NPNIILGADVFYDA 152 (169)
Q Consensus 139 ~fDlIi~sd~iy~~ 152 (169)
.||.||| |+-|-+
T Consensus 284 ~fDaIvc-DPPYGV 296 (421)
T KOG2671|consen 284 KFDAIVC-DPPYGV 296 (421)
T ss_pred eeeEEEe-CCCcch
Confidence 8999998 888854
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0049 Score=47.85 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=66.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-------CCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-------SIFD 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-------~~~~ 137 (169)
....+++||||.=||..++..|.. +.+|+++|++. +..+...+-.+..+..-++. +..+...+ ....
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~--~~~~~~~~~~k~agv~~KI~-~i~g~a~esLd~l~~~~~~ 147 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDA--DAYEIGLELVKLAGVDHKIT-FIEGPALESLDELLADGES 147 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecCh--HHHHHhHHHHHhccccceee-eeecchhhhHHHHHhcCCC
Confidence 446789999999999998877764 56999999994 58888888777777654332 22222111 1123
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..||+++. | .+...+...++.+.++|+||
T Consensus 148 ~tfDfaFv-D--adK~nY~~y~e~~l~Llr~G 176 (237)
T KOG1663|consen 148 GTFDFAFV-D--ADKDNYSNYYERLLRLLRVG 176 (237)
T ss_pred CceeEEEE-c--cchHHHHHHHHHHHhhcccc
Confidence 48999985 3 23445557778888888875
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00061 Score=53.96 Aligned_cols=101 Identities=13% Similarity=0.114 Sum_probs=61.8
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCC--------------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-------------------------- 119 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~-------------------------- 119 (169)
...+|.++||+|||.-+..+..|..-+ +|+++|+.+ ...+.+++.++..+.
T Consensus 53 g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~--~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~ 130 (256)
T PF01234_consen 53 GGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSE--QNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEK 130 (256)
T ss_dssp SSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSH--HHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccH--hhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHH
Confidence 445788999999999877665555444 799999995 477766665543221
Q ss_pred -cceEEE-EEcCCCCc-CCC-----CCCCcEEEEcCcCC----CCCChHHHHHHHHHhccCC
Q 030935 120 -NCRVMG-LTWGFLDA-SIF-----DLNPNIILGADVFY----DASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 -~~~~~~-l~~~~~~~-~~~-----~~~fDlIi~sd~iy----~~~~~~~l~~~l~~~L~p~ 169 (169)
.-.+.. +.|+-... ++. +.+||+|+++=++- +.+.+...++.+..+||||
T Consensus 131 lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpG 192 (256)
T PF01234_consen 131 LRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPG 192 (256)
T ss_dssp HHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEE
T ss_pred HHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 111322 33332222 121 22599999988775 4466788999999999996
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.002 Score=50.26 Aligned_cols=95 Identities=13% Similarity=0.087 Sum_probs=60.2
Q ss_pred HHHHHHHHhccCCC--CCCeEEEECCCCCHH--HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCC
Q 030935 56 VILAEYVWQQRYRF--SGANVVELGAGTSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGF 130 (169)
Q Consensus 56 ~~La~~l~~~~~~~--~~~~vLElGcGtGl~--~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~ 130 (169)
..|++.|.+-.... ++.++||+|.|.-.+ -+-.-.+|.+.+++|+++ -.++.|+.++..| ++...+.-....+
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~--~sl~sA~~ii~~N~~l~~~I~lr~qk~ 139 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDS--QSLSSAKAIISANPGLERAIRLRRQKD 139 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCH--HHHHHHHHHHHcCcchhhheeEEeccC
Confidence 45566665543333 344789999885532 233344678999999995 4999999999988 5543322111111
Q ss_pred ---CCcCC--CCCCCcEEEEcCcCCCC
Q 030935 131 ---LDASI--FDLNPNIILGADVFYDA 152 (169)
Q Consensus 131 ---~~~~~--~~~~fDlIi~sd~iy~~ 152 (169)
..... ..+.||+++|+.++|..
T Consensus 140 ~~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 140 SDAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccccccccceeeeEecCCCcchh
Confidence 11111 13589999999999854
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00029 Score=54.04 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=64.3
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
..++||||+|.|-++..++....+|.+|++|. .|....++ .+.++ ...++|.. .+-+||+|.|-.++=
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~--tMr~rL~k----k~ynV-l~~~ew~~-----t~~k~dli~clNlLD 180 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSW--TMRDRLKK----KNYNV-LTEIEWLQ-----TDVKLDLILCLNLLD 180 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhH--HHHHHHhh----cCCce-eeehhhhh-----cCceeehHHHHHHHH
Confidence 46899999999999998888777899999994 46655443 33332 23355553 234899999998887
Q ss_pred CCCChHHHHHHHHHhccC
Q 030935 151 DASGKICAFEILICSLFP 168 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p 168 (169)
-..+.-.+++-|+..|+|
T Consensus 181 Rc~~p~kLL~Di~~vl~p 198 (288)
T KOG3987|consen 181 RCFDPFKLLEDIHLVLAP 198 (288)
T ss_pred hhcChHHHHHHHHHHhcc
Confidence 777778889999988887
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.034 Score=44.80 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=67.4
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcc--eEEEEEcCCCCc-CCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAK-VG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RVMGLTWGFLDA-SIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~--~~~~l~~~~~~~-~~~~~~fDl 142 (169)
+.-+|||+.||.|--=+-+.. .. .+|.+.|++ +..++..++-++.+++.. ++...+..+... .....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys--~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l 212 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYS--PINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL 212 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCC--HHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence 445899999999966554433 22 379999999 569999999999999874 333333332211 112347899
Q ss_pred EEEcCcCCCCCC---hHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASG---KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~---~~~l~~~l~~~L~p~ 169 (169)
+|.|-++-..++ +...++-+.++|.|+
T Consensus 213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pg 242 (311)
T PF12147_consen 213 AIVSGLYELFPDNDLVRRSLAGLARALEPG 242 (311)
T ss_pred EEEecchhhCCcHHHHHHHHHHHHHHhCCC
Confidence 999998865544 455677788888775
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0021 Score=47.79 Aligned_cols=49 Identities=22% Similarity=0.124 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhccCCC--CCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRF--SGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSN 102 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~--~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~ 102 (169)
++..|.+...+..-.. ++.+||||||++|..+..+++++ .+|+++|+.+
T Consensus 5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~ 58 (181)
T PF01728_consen 5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP 58 (181)
T ss_dssp HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence 5667777777665222 34799999999999999999988 4899999996
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00083 Score=53.55 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=80.4
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRV 123 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~ 123 (169)
-|+.+-+++..-+.+|... ..+.|+.|+=+| ---+.|++++.-|. +|.++|+++ +++..+++-++..+.+ +.+
T Consensus 130 QgfvTpEttv~Rv~lm~~R-GDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDE--Rli~fi~k~aee~g~~~ie~ 205 (354)
T COG1568 130 QGFVTPETTVSRVALMYSR-GDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDE--RLIKFIEKVAEELGYNNIEA 205 (354)
T ss_pred cccccccceeeeeeeeccc-cCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechH--HHHHHHHHHHHHhCccchhh
Confidence 3444545544444555544 356899999999 77799998888664 899999996 5999999988888876 555
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
..++..+....-...+||+++ .|+.+....+..++..=...|+
T Consensus 206 ~~~Dlr~plpe~~~~kFDvfi-TDPpeTi~alk~FlgRGI~tLk 248 (354)
T COG1568 206 FVFDLRNPLPEDLKRKFDVFI-TDPPETIKALKLFLGRGIATLK 248 (354)
T ss_pred eeehhcccChHHHHhhCCeee-cCchhhHHHHHHHHhccHHHhc
Confidence 545444332222335999988 5888888777777665544443
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0033 Score=50.22 Aligned_cols=71 Identities=14% Similarity=0.051 Sum_probs=48.5
Q ss_pred eEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+++||.||.|..++.+.+.|.+ |.++|++ +.+++..+.|....-....+..+...+ ....+|+|+++-++-
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~--~~a~~~~~~N~~~~~~~~Di~~~~~~~-----~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEID--KSAAETYEANFPNKLIEGDITKIDEKD-----FIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCC--HHHHHHHHHhCCCCCccCccccCchhh-----cCCCCCEEEeCCCCh
Confidence 6899999999999999998885 8889999 458887777764221111122221111 124799999988765
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0054 Score=47.25 Aligned_cols=104 Identities=14% Similarity=-0.048 Sum_probs=67.1
Q ss_pred ceeecchHHHHHHHHHhccCCCCC----CeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcce
Q 030935 48 GLFVWPCSVILAEYVWQQRYRFSG----ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (169)
Q Consensus 48 g~~~W~~~~~La~~l~~~~~~~~~----~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~ 122 (169)
..+--+++.+|.+|+.......+. .++||+||=+....+. ..+. +|+.+|+++. ...
T Consensus 25 ~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns~----------------~~~ 86 (219)
T PF11968_consen 25 KDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNSQ----------------HPG 86 (219)
T ss_pred CCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCCC----------------CCC
Confidence 334456899999999876433222 4899999964433222 2333 7999999852 112
Q ss_pred EEEEEcCCCCcC-CCCCCCcEEEEcCcCCCCCChHH---HHHHHHHhccCC
Q 030935 123 VMGLTWGFLDAS-IFDLNPNIILGADVFYDASGKIC---AFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~~~-~~~~~fDlIi~sd~iy~~~~~~~---l~~~l~~~L~p~ 169 (169)
+...++-....+ ...++||+|.+|-|+-++++... .++...+.|+|.
T Consensus 87 I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 87 ILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPP 137 (219)
T ss_pred ceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence 333444432211 12459999999999998887654 777888888773
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0042 Score=51.65 Aligned_cols=95 Identities=18% Similarity=0.150 Sum_probs=67.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHH--HhCCc--ceEEEEEcCCCCcCCCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCE--MNKLN--CRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~--~n~~~--~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
.++.+++++|||.|-+....+..+ +++++.+.+. .+..+.+.. ...++ +.+. ..|- ...+..+..||.+
T Consensus 109 ~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~----~e~~~~~~~~~~~~l~~k~~~~-~~~~-~~~~fedn~fd~v 182 (364)
T KOG1269|consen 109 FPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNA----YEAFRANELAKKAYLDNKCNFV-VADF-GKMPFEDNTFDGV 182 (364)
T ss_pred cccccccccCcCcCchhHHHHHhccCCccCCCcCH----HHHHHHHHHHHHHHhhhhccee-hhhh-hcCCCCccccCcE
Confidence 456689999999999999988865 5899999994 333332221 11221 1121 1111 1224456799999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
-+.|++-+..+...+++.+.+.++||
T Consensus 183 ~~ld~~~~~~~~~~~y~Ei~rv~kpG 208 (364)
T KOG1269|consen 183 RFLEVVCHAPDLEKVYAEIYRVLKPG 208 (364)
T ss_pred EEEeecccCCcHHHHHHHHhcccCCC
Confidence 99999999999999999999999997
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.038 Score=45.83 Aligned_cols=76 Identities=20% Similarity=0.058 Sum_probs=52.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhC----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC--CCcCCCC-CC
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVG----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF--LDASIFD-LN 139 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~g----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~--~~~~~~~-~~ 139 (169)
+..+|.+|||+.++.|.=+..++.+. ..|++.|.++ .=+..+++|+++-|+.. +.....++ ....... .+
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~--~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~ 229 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSP--KRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEK 229 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCH--HHHHHHHHHHHHcCCCc-eEEEecccccccccccccCc
Confidence 34578899999999997777666643 3589999995 48899999999998875 22233222 2112222 26
Q ss_pred CcEEEE
Q 030935 140 PNIILG 145 (169)
Q Consensus 140 fDlIi~ 145 (169)
||-|+.
T Consensus 230 fD~iLl 235 (355)
T COG0144 230 FDRILL 235 (355)
T ss_pred CcEEEE
Confidence 999995
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0026 Score=53.19 Aligned_cols=76 Identities=24% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
+.++||-=||||+=|+-.++. +. +|++.|++ +++++.+++|++.|++..........+..... ....||+|=-
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~--~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDIS--PEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES---HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCC--HHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 458999999999999988876 33 89999999 57999999999999998732224333322212 3568998853
Q ss_pred cCcC
Q 030935 146 ADVF 149 (169)
Q Consensus 146 sd~i 149 (169)
|++
T Consensus 128 -DPf 130 (377)
T PF02005_consen 128 -DPF 130 (377)
T ss_dssp ---S
T ss_pred -CCC
Confidence 444
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0026 Score=54.47 Aligned_cols=118 Identities=7% Similarity=-0.078 Sum_probs=62.5
Q ss_pred CcceeecchHHHHHHHHHhccCC-CCCC---eEEEECCCCCHHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHhCCc
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYR-FSGA---NVVELGAGTSLPGLVAAKVGSNVTLTDDSN-RIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~-~~~~---~vLElGcGtGl~~l~~a~~ga~V~~~D~~~-~~~~l~~~~~n~~~n~~~ 120 (169)
+.|.....++..-.++|.+.... ..+. .+||+|||+|.+|..+..++-.++.+-..+ .+..++.|.+ -|+.
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----RGvp 164 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----RGVP 164 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----cCcc
Confidence 44555554655555555554433 2222 589999999999999999986433332221 1123333322 2333
Q ss_pred ceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCC-CChHHHHHHHHHhccCC
Q 030935 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDA-SGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~-~~~~~l~~~l~~~L~p~ 169 (169)
.-+. ..+....++++..||+|=|+.|+-.- ..-.-++--+-+.|+||
T Consensus 165 a~~~--~~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpG 212 (506)
T PF03141_consen 165 AMIG--VLGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPG 212 (506)
T ss_pred hhhh--hhccccccCCccchhhhhcccccccchhcccceeehhhhhhccC
Confidence 2111 11233345566677887777766422 22223445555666664
|
; GO: 0008168 methyltransferase activity |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.03 Score=45.80 Aligned_cols=97 Identities=19% Similarity=0.149 Sum_probs=60.2
Q ss_pred CCCeEEEECCCCCHHHHHHHH----h--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcC---C----
Q 030935 70 SGANVVELGAGTSLPGLVAAK----V--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDAS---I---- 135 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~----~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~---~---- 135 (169)
++..++|||||+|.=...+.. . ....+.+|+| .++++.+..++.....+ +.+. -.|++.... .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS--~~~L~~a~~~L~~~~~p~l~v~-~l~gdy~~~l~~l~~~~ 152 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVS--RSELQRTLAELPLGNFSHVRCA-GLLGTYDDGLAWLKRPE 152 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHhhhhccCCCeEEE-EEEecHHHHHhhccccc
Confidence 456899999999965332222 2 2479999999 56999988888733332 3332 345544221 1
Q ss_pred CCCCCcEEEEcC-cCCCC--CChHHHHHHHHH-hccCC
Q 030935 136 FDLNPNIILGAD-VFYDA--SGKICAFEILIC-SLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd-~iy~~--~~~~~l~~~l~~-~L~p~ 169 (169)
......+++.-- .|-+. .....+++.+++ .|.|+
T Consensus 153 ~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 153 NRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPS 190 (319)
T ss_pred ccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCC
Confidence 112356666443 55443 445578899988 88885
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.016 Score=44.73 Aligned_cols=75 Identities=17% Similarity=0.139 Sum_probs=57.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
++.++.|+||=-|.+++.+.+.+. .+++.|+++. .++.+.+|+..+++.-++. ...++-...+... .+|+|+-+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~g--pl~~a~~~v~~~~l~~~i~-vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPG--PLESAIRNVKKNNLSERID-VRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccC--HHHHHHHHHHhcCCcceEE-EeccCCccccCccCCcCEEEEe
Confidence 455699999999999999999775 7999999965 9999999999998875433 4555554444443 78887754
Q ss_pred C
Q 030935 147 D 147 (169)
Q Consensus 147 d 147 (169)
-
T Consensus 93 G 93 (226)
T COG2384 93 G 93 (226)
T ss_pred C
Confidence 3
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.047 Score=43.79 Aligned_cols=95 Identities=24% Similarity=0.203 Sum_probs=54.0
Q ss_pred CeEEEECCC-CCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHH-HhCCcceEEEEEcCCCCcCCCC-CCCcEEEE
Q 030935 72 ANVVELGAG-TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTWGFLDASIFD-LNPNIILG 145 (169)
Q Consensus 72 ~~vLElGcG-tGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~-~n~~~~~~~~l~~~~~~~~~~~-~~fDlIi~ 145 (169)
++|+=|||| --+.++.+++. ++.|+.+|++ +++++.+++-++ ..++..+.. +..++......+ ..||+|+-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d--~~A~~~a~~lv~~~~~L~~~m~-f~~~d~~~~~~dl~~~DvV~l 198 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDID--PEANELARRLVASDLGLSKRMS-FITADVLDVTYDLKEYDVVFL 198 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESS--HHHHHHHHHHHH---HH-SSEE-EEES-GGGG-GG----SEEEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHhhcccccCCeE-EEecchhccccccccCCEEEE
Confidence 599999999 66888988864 4579999999 669998888766 333333222 333332221112 48999998
Q ss_pred cCcCC-CCCChHHHHHHHHHhccCC
Q 030935 146 ADVFY-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy-~~~~~~~l~~~l~~~L~p~ 169 (169)
+-.+. ..+.-..+++.|.+.++||
T Consensus 199 AalVg~~~e~K~~Il~~l~~~m~~g 223 (276)
T PF03059_consen 199 AALVGMDAEPKEEILEHLAKHMAPG 223 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TT
T ss_pred hhhcccccchHHHHHHHHHhhCCCC
Confidence 88887 5577899999999999986
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0051 Score=51.75 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=58.1
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.++|-.-|.+ .+..+...--.-...|..|.|+.||.|-+++.+++.+.+|++.|++ +++++..+.|++.|.+..
T Consensus 225 ~DfskVYWns-RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLN--pesik~Lk~ni~lNkv~~ 298 (495)
T KOG2078|consen 225 FDFSKVYWNS-RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLN--PESIKWLKANIKLNKVDP 298 (495)
T ss_pred EecceEEeec-cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCC--HHHHHHHHHhccccccch
Confidence 3567777984 4444433222223367789999999999999999999999999999 679999999999998753
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.024 Score=46.24 Aligned_cols=75 Identities=25% Similarity=0.341 Sum_probs=57.4
Q ss_pred ceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
.+=.++.++...+-|+.+=| +-++-+..+......|.+||=+||| .|++++..|+ .|+ +|+.+|..+ .-++.|
T Consensus 135 dfc~KLPd~vs~eeGAl~eP--LsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~--~Rle~A 210 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGALIEP--LSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA--NRLELA 210 (354)
T ss_pred HheeeCCCCCchhhcccccc--hhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH--HHHHHH
Confidence 44477777777777877766 4455556666667789999999999 7998888777 577 899999995 477777
Q ss_pred HH
Q 030935 111 RR 112 (169)
Q Consensus 111 ~~ 112 (169)
|+
T Consensus 211 k~ 212 (354)
T KOG0024|consen 211 KK 212 (354)
T ss_pred HH
Confidence 76
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.026 Score=41.24 Aligned_cols=47 Identities=19% Similarity=0.113 Sum_probs=39.8
Q ss_pred CeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
.+.+|||+|.|.+-+.+++.|. .-++++++ +-++..+|-..-+.++.
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELN--pwLVaysrl~a~R~g~~ 121 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELN--PWLVAYSRLHAWRAGCA 121 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceecc--HHHHHHHHHHHHHHhcc
Confidence 4799999999999999999996 79999999 56888888776666654
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.023 Score=43.00 Aligned_cols=60 Identities=17% Similarity=0.093 Sum_probs=42.9
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
+.-+-...|.+.+.+.-. .+|..|||--||+|-.++++.++|-+.+++|++ +..++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~--~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEID--EEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESS--HHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCC--HHHHHHhcC
Confidence 344556777777765432 368899999999999999999999999999999 457777753
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.04 Score=44.79 Aligned_cols=60 Identities=7% Similarity=-0.075 Sum_probs=46.3
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
+|.+.+.+.....+|..++|.-+|.|.-+..+++. ..+|++.|.+ +.+++.+++.++...
T Consensus 7 Vll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D--~~Al~~ak~~L~~~~ 68 (305)
T TIGR00006 7 VLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRD--PQAIAFAKERLSDFE 68 (305)
T ss_pred hhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHhhcC
Confidence 44445555444456779999999999999988875 2589999999 679999998876543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.037 Score=42.61 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=52.7
Q ss_pred eeecchHH--HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 49 LFVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 49 ~~~W~~~~--~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
...||.-. .+.+|+.+.+ ++..|-|+|||-+.++..+ ..+..|...|+-.. |. .+..-
T Consensus 52 v~~WP~nPvd~iI~~l~~~~---~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-------------n~---~Vtac 111 (219)
T PF05148_consen 52 VKKWPVNPVDVIIEWLKKRP---KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-------------NP---RVTAC 111 (219)
T ss_dssp HCTSSS-HHHHHHHHHCTS----TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------------ST---TEEES
T ss_pred HhcCCCCcHHHHHHHHHhcC---CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-------------CC---CEEEe
Confidence 35788744 4556665443 4568999999999998543 23447888888631 11 23323
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+... -++.+...|++|.+-.+- -.++..+++--.+.|||+
T Consensus 112 dia~--vPL~~~svDv~VfcLSLM-GTn~~~fi~EA~RvLK~~ 151 (219)
T PF05148_consen 112 DIAN--VPLEDESVDVAVFCLSLM-GTNWPDFIREANRVLKPG 151 (219)
T ss_dssp -TTS---S--TT-EEEEEEES----SS-HHHHHHHHHHHEEEE
T ss_pred cCcc--CcCCCCceeEEEEEhhhh-CCCcHHHHHHHHheeccC
Confidence 3222 245567899999765543 467788888888888874
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.017 Score=47.81 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=58.0
Q ss_pred CCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHHHHHHh-CCcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 71 GANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMN-KLNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~n~~~n-~~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
..+|+|-=||||+=|+-.+. .+. +|++.|++ |++++.+++|++.| +.+..+.. .+..... ....||+|=-
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDis--p~Avelik~Nv~~N~~~~~~v~n---~DAN~lm~~~~~~fd~IDi 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDIS--PKAVELIKENVRLNSGEDAEVIN---KDANALLHELHRAFDVIDI 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCC--HHHHHHHHHHHHhcCcccceeec---chHHHHHHhcCCCccEEec
Confidence 67999999999999997776 455 89999999 56999999999999 33333332 2221111 1257888742
Q ss_pred cCcCCCC-CChHHHHHHHH
Q 030935 146 ADVFYDA-SGKICAFEILI 163 (169)
Q Consensus 146 sd~iy~~-~~~~~l~~~l~ 163 (169)
|++=.+ +.+++.++.+.
T Consensus 128 -DPFGSPaPFlDaA~~s~~ 145 (380)
T COG1867 128 -DPFGSPAPFLDAALRSVR 145 (380)
T ss_pred -CCCCCCchHHHHHHHHhh
Confidence 554333 22455555444
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.039 Score=45.64 Aligned_cols=62 Identities=19% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHHHHHhccC---CCCCCeEEEECCCCCHHHHHHHHh----------CCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 55 SVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 55 ~~~La~~l~~~~~---~~~~~~vLElGcGtGl~~l~~a~~----------ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
+..++.|+.+.-. ......++|+|+|.|.+..-+++. ..++..++.|+ ++.+.-+.+++...
T Consensus 59 Gella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~--~L~~~Qk~~L~~~~ 133 (370)
T COG1565 59 GELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSP--ELRARQKETLKATE 133 (370)
T ss_pred HHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCH--HHHHHHHHHHhccc
Confidence 6677777776432 223347999999999988755442 34899999994 57776666665443
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.05 Score=44.74 Aligned_cols=88 Identities=10% Similarity=-0.109 Sum_probs=63.2
Q ss_pred CeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
...+|+|.|.|.+.-.+...-.+|.+++.+. + .+-.++.++. .++ ....|+.....+ +-|+|+.-=++++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdl-p-~v~~~a~~~~-~gV-----~~v~gdmfq~~P--~~daI~mkWiLhd 248 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDL-P-FVLAAAPYLA-PGV-----EHVAGDMFQDTP--KGDAIWMKWILHD 248 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCH-H-HHHhhhhhhc-CCc-----ceecccccccCC--CcCeEEEEeeccc
Confidence 4789999999988877777666899999884 3 4444444443 332 233455554422 5579999999987
Q ss_pred C--CChHHHHHHHHHhccCC
Q 030935 152 A--SGKICAFEILICSLFPI 169 (169)
Q Consensus 152 ~--~~~~~l~~~l~~~L~p~ 169 (169)
. ++.-++++.+++.|+|+
T Consensus 249 wtDedcvkiLknC~~sL~~~ 268 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPG 268 (342)
T ss_pred CChHHHHHHHHHHHHhCCCC
Confidence 6 55788999999999986
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.054 Score=43.42 Aligned_cols=57 Identities=21% Similarity=0.119 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+.|.+.+.... -.+|..|||--||+|-.++++.+.|-+.+++|++ ++.++.+++.+.
T Consensus 195 ~~L~erlI~~~-S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~--~~Y~~~a~~Rl~ 251 (284)
T PRK11524 195 EALLKRIILAS-SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEIN--SEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCC--HHHHHHHHHHHH
Confidence 44555554432 2378899999999999999999999999999999 568898888875
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.015 Score=46.96 Aligned_cols=50 Identities=24% Similarity=0.245 Sum_probs=44.4
Q ss_pred CCCeEEEECCCCCHHHH-HHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 70 SGANVVELGAGTSLPGL-VAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l-~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.+..|.||=+|.|.+.+ ++.++|| .|.+.|.+ |..++..++|++.|+..+
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwN--p~svEaLrR~~~~N~V~~ 245 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWN--PWSVEALRRNAEANNVMD 245 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecC--HHHHHHHHHHHHhcchHH
Confidence 45689999999999999 8889998 69999999 679999999999998654
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.034 Score=42.63 Aligned_cols=49 Identities=27% Similarity=0.116 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSN 102 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~ 102 (169)
++..|.+...++.-..++.+|+||||-.|..+..++++.. +|+++|+.+
T Consensus 29 Aa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p 80 (205)
T COG0293 29 AAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP 80 (205)
T ss_pred HHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc
Confidence 5677777777774444678999999999999999998643 499999997
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.023 Score=39.05 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=28.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~ 102 (169)
....+|||||+|++--.+.+-|.+=.++|.-.
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~ 90 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARR 90 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence 44799999999999999999998888888864
|
; GO: 0008168 methyltransferase activity |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.081 Score=41.13 Aligned_cols=59 Identities=12% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
..|.+.+.+... .+|..|||--||+|..++++.+.|-+.+++|++ ++..+.+++.++..
T Consensus 150 ~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~--~~y~~~~~~r~~~~ 208 (227)
T PRK13699 150 VTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELL--EQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecC--HHHHHHHHHHHHHH
Confidence 444455443322 267899999999999999999999999999999 56888887777543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.5 Score=36.76 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCcceeecch-HHHHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHH-hC--CeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 45 EEYGLFVWPC-SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 45 ~~~g~~~W~~-~~~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~-~g--a~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
...+.|+|.. --.||..+... ....+|.+||=||+.+|..--.++- .| ..|.+++.++ +..+.+-.-++ .
T Consensus 44 ~~~eYR~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~--r~~rdL~~la~-~ 120 (229)
T PF01269_consen 44 KKVEYRVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSP--RSMRDLLNLAK-K 120 (229)
T ss_dssp --EEEEEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSH--HHHHHHHHHHH-H
T ss_pred CccceeecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecc--hhHHHHHHHhc-c
Confidence 3458899976 23455555443 3456788999999999977655555 34 3899999995 45554433222 2
Q ss_pred CCcceEEEEEcCCCCc-C--CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 118 KLNCRVMGLTWGFLDA-S--IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~~~~l~~~~~~~-~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.-+ +..+.-+.... . ..-+.+|+|++ |+- .+.+.+-+..+....||++
T Consensus 121 R~N--IiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~g 171 (229)
T PF01269_consen 121 RPN--IIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPG 171 (229)
T ss_dssp STT--EEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEE
T ss_pred CCc--eeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCC
Confidence 222 22232222111 0 11237888885 665 4566666777777777764
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.054 Score=43.54 Aligned_cols=92 Identities=14% Similarity=0.066 Sum_probs=62.2
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
+-..++..+-.++.+++. ..+|.+|||++||.|.=+..++.. + ..|++.|++ +.=+..++.|++..|.....
T Consensus 65 G~~~vQd~sS~l~~~~L~---~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~--~~Rl~~l~~~~~r~g~~~v~ 139 (283)
T PF01189_consen 65 GLFYVQDESSQLVALALD---PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDIS--PKRLKRLKENLKRLGVFNVI 139 (283)
T ss_dssp TSEEEHHHHHHHHHHHHT---TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESS--HHHHHHHHHHHHHTT-SSEE
T ss_pred CcEEeccccccccccccc---ccccccccccccCCCCceeeeeecccchhHHHHhccC--HHHHHHHHHHHHhcCCceEE
Confidence 445667666666665553 336789999999999888877774 2 389999999 45888999999988876432
Q ss_pred EEEEcCCCCc---CCCCCCCcEEEE
Q 030935 124 MGLTWGFLDA---SIFDLNPNIILG 145 (169)
Q Consensus 124 ~~l~~~~~~~---~~~~~~fDlIi~ 145 (169)
. .. .+... ......||.|+.
T Consensus 140 ~-~~-~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 140 V-IN-ADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp E-EE-SHHHHHHHHHHTTTEEEEEE
T ss_pred E-Ee-eccccccccccccccchhhc
Confidence 2 22 22111 112336999995
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.21 Score=39.25 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=30.3
Q ss_pred CeEEEECCCCCHHHHHHHHh----------CCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAKV----------GSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~----------ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-+|+|+|+|+|.++.-+++. ..+++.+|.|+. +.+..++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~--L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY--LRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC--CHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH--HHHHHHHHhhh
Confidence 58999999999998766542 127999999974 66666666543
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.031 Score=44.84 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=44.5
Q ss_pred eEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCCCCCcEEEEcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFDLNPNIILGAD 147 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~~~fDlIi~sd 147 (169)
+++||-||.|.+++.+.+.|. .|.++|++ +.+.+.-+.|.. ....++.... +.. .+|++++.-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~--~~a~~~y~~N~~---------~~~~~Di~~~~~~~l~~-~~D~l~ggp 69 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEID--PDACETYKANFP---------EVICGDITEIDPSDLPK-DVDLLIGGP 69 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESS--HHHHHHHHHHHT---------EEEESHGGGCHHHHHHH-T-SEEEEE-
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecC--HHHHHhhhhccc---------ccccccccccccccccc-cceEEEecc
Confidence 689999999999999999997 59999999 457777777765 1223333221 122 599999988
Q ss_pred cCC
Q 030935 148 VFY 150 (169)
Q Consensus 148 ~iy 150 (169)
++-
T Consensus 70 PCQ 72 (335)
T PF00145_consen 70 PCQ 72 (335)
T ss_dssp --T
T ss_pred CCc
Confidence 765
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.14 Score=39.67 Aligned_cols=43 Identities=14% Similarity=0.048 Sum_probs=30.7
Q ss_pred CeEEEECCCCCHHHHHH-HHhC---CeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVA-AKVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~-a~~g---a~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-++.|=+||+|.+--.+ ...+ ..|+++|++ +++++.|++|+.+
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId--~~aL~lA~kNL~L 99 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDID--EDALELARKNLSL 99 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES---HHHHHHHHHHHHC
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCC--HHHHHHHHHhhhh
Confidence 47999999999654333 3333 279999999 5799999999754
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.54 Score=40.98 Aligned_cols=42 Identities=31% Similarity=0.417 Sum_probs=33.5
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
.++.+|+=+||| .|+.++..|+ +|++|+++|.++ +-++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~--~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP--EVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH
Confidence 468899999999 7888887776 689999999994 46666554
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.1 Score=40.80 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=40.0
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHH---HHHhCCc----ceEEEEEcCCCCcC--CCCCCCcEE
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV---CEMNKLN----CRVMGLTWGFLDAS--IFDLNPNII 143 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n---~~~n~~~----~~~~~l~~~~~~~~--~~~~~fDlI 143 (169)
+|||.-+|-|.=++.+|..|++|++++.++ -+....+.- .....-. .+...+.+++..+. ....+||+|
T Consensus 78 ~VLDaTaGLG~Da~vlA~~G~~V~~lErsp--via~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASLGCKVTGLERSP--VIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp -EEETT-TTSHHHHHHHHHT--EEEEE--H--HHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred EEEECCCcchHHHHHHHccCCeEEEEECCH--HHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 899999999999999999999999999994 344333332 2222111 12234555654332 234599999
Q ss_pred EEcCcCCCCCC
Q 030935 144 LGADVFYDASG 154 (169)
Q Consensus 144 i~sd~iy~~~~ 154 (169)
.. |+.|....
T Consensus 156 Y~-DPMFp~~~ 165 (234)
T PF04445_consen 156 YF-DPMFPERK 165 (234)
T ss_dssp EE---S-----
T ss_pred EE-CCCCCCcc
Confidence 97 88886543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.028 Score=45.02 Aligned_cols=108 Identities=19% Similarity=0.123 Sum_probs=68.7
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
..+-++.||-.. +|+...+ .+..++|.|||.|-....- -...+++.|++. .++.-+++ .+.+ .+
T Consensus 26 s~tr~~~Wp~v~---qfl~~~~---~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~--~l~~~ak~----~~~~-~~- 89 (293)
T KOG1331|consen 26 SATRAAPWPMVR---QFLDSQP---TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCT--GLLGGAKR----SGGD-NV- 89 (293)
T ss_pred cccccCccHHHH---HHHhccC---CcceeeecccCCcccCcCC--Ccceeeecchhh--hhcccccc----CCCc-ee-
Confidence 457788999754 3444333 4789999999998433211 223689999984 35555443 1221 11
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh---HHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASGK---ICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~---~~l~~~l~~~L~p~ 169 (169)
........+..+..||.+++.-+++|.... ..+++.+.+.|+|+
T Consensus 90 -~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpg 136 (293)
T KOG1331|consen 90 -CRADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPG 136 (293)
T ss_pred -ehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCC
Confidence 112223345556799999999999988554 55778888888875
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.12 Score=43.13 Aligned_cols=94 Identities=15% Similarity=0.071 Sum_probs=60.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhC-C-eEEEEcCCCcHHHHHHHHHHHHH---hCCc-----ceEEEEEcCCCCcCCCCCCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCEM---NKLN-----CRVMGLTWGFLDASIFDLNP 140 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g-a-~V~~~D~~~~~~~l~~~~~n~~~---n~~~-----~~~~~l~~~~~~~~~~~~~f 140 (169)
-.+||=||-|-|+....+.|.- . +|+.+|++ |+|++.+++|... |+.. +.+..-+...+... ....|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLD--P~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~-a~~~f 366 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLD--PRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT-AADMF 366 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecC--HHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh-hcccc
Confidence 3489999999999999998875 3 89999999 6799999977633 3321 22222222222211 23489
Q ss_pred cEEEEcCcCC-CCCC-----hHHHHHHHHHhccC
Q 030935 141 NIILGADVFY-DASG-----KICAFEILICSLFP 168 (169)
Q Consensus 141 DlIi~sd~iy-~~~~-----~~~l~~~l~~~L~p 168 (169)
|+||- |..= +... -.++.+.+++.|++
T Consensus 367 D~vIV-Dl~DP~tps~~rlYS~eFY~ll~~~l~e 399 (508)
T COG4262 367 DVVIV-DLPDPSTPSIGRLYSVEFYRLLSRHLAE 399 (508)
T ss_pred cEEEE-eCCCCCCcchhhhhhHHHHHHHHHhcCc
Confidence 99995 4332 1111 24577777777776
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.34 Score=38.67 Aligned_cols=95 Identities=13% Similarity=0.069 Sum_probs=59.4
Q ss_pred eecchH--HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 50 FVWPCS--VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 50 ~~W~~~--~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
.-||-. ..+.++|...+ ....|-|+|||-+-++. ....+|...|+-. .+-++...+
T Consensus 161 ~kWP~nPld~ii~~ik~r~---~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cD 218 (325)
T KOG3045|consen 161 KKWPENPLDVIIRKIKRRP---KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACD 218 (325)
T ss_pred HhCCCChHHHHHHHHHhCc---CceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeecc
Confidence 346652 23444444332 45589999999987765 3334788888752 112233333
Q ss_pred cCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 128 WGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+ -++.+.+.|+++..-.+ .-.++..+++-..+.|+||
T Consensus 219 m~~--vPl~d~svDvaV~CLSL-Mgtn~~df~kEa~RiLk~g 257 (325)
T KOG3045|consen 219 MRN--VPLEDESVDVAVFCLSL-MGTNLADFIKEANRILKPG 257 (325)
T ss_pred ccC--CcCccCcccEEEeeHhh-hcccHHHHHHHHHHHhccC
Confidence 333 24556799999864433 3578888999999999886
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.16 Score=41.64 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=48.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCC-CCcEEEEc
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDL-NPNIILGA 146 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~-~fDlIi~s 146 (169)
.+++||-||.|.+.+.+...|. -+.++|+++ ..++.-+.|... .. ..+++..+ ..... .+|+|++.
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~--~a~~ty~~n~~~----~~---~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDP--PAVATYKANFPH----GD---IILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCH--HHHHHHHHhCCC----Cc---eeechHhhcChhhccccCCCEEEeC
Confidence 4899999999999999999998 489999994 477666665542 11 12222221 11112 78999998
Q ss_pred CcCCC
Q 030935 147 DVFYD 151 (169)
Q Consensus 147 d~iy~ 151 (169)
-++..
T Consensus 75 pPCQ~ 79 (328)
T COG0270 75 PPCQD 79 (328)
T ss_pred CCCcc
Confidence 88753
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.43 Score=41.32 Aligned_cols=78 Identities=9% Similarity=-0.039 Sum_probs=54.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC-----CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-G-----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI-----FD 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-g-----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~-----~~ 137 (169)
+..+|.|--||+|..-+.+++. + ....+.+++ +.....++.|.-.++++. ......++... +. ..
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~--~~t~~l~~mN~~lhgi~~-~~~i~~~dtl~~~~~~~~~~~ 262 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN--DTTYRLAKMNLILHGIEG-DANIRHGDTLSNPKHDDKDDK 262 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC--HHHHHHHHHHHHHhCCCc-cccccccccccCCcccccCCc
Confidence 4559999999999776655542 1 348899988 569999999999999875 22233333222 11 22
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.+||+|+++.+..
T Consensus 263 ~~~D~viaNPPf~ 275 (489)
T COG0286 263 GKFDFVIANPPFS 275 (489)
T ss_pred cceeEEEeCCCCC
Confidence 4799999988775
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.0083 Score=40.52 Aligned_cols=90 Identities=17% Similarity=0.065 Sum_probs=30.7
Q ss_pred EEECCCCCHHHHHHHHh---C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCCCCCcEEEEc
Q 030935 75 VELGAGTSLPGLVAAKV---G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDLNPNIILGA 146 (169)
Q Consensus 75 LElGcGtGl~~l~~a~~---g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~~~fDlIi~s 146 (169)
||+|+..|..++.+++. . .+++++|..+ . .+..+++++..+...++. +..++..+. ....++|+|+-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~--~-~~~~~~~~~~~~~~~~~~-~~~g~s~~~l~~~~~~~~dli~i- 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFP--G-DEQAQEIIKKAGLSDRVE-FIQGDSPDFLPSLPDGPIDLIFI- 75 (106)
T ss_dssp --------------------------EEEESS---------------GGG-BTEE-EEES-THHHHHHHHH--EEEEEE-
T ss_pred CccccccccccccccccccccccCCEEEEECCC--c-ccccchhhhhcCCCCeEE-EEEcCcHHHHHHcCCCCEEEEEE-
Confidence 79999999988877653 2 2799999985 1 334444444444443332 444543221 12358999985
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|--|..+....-++.+...|+|+
T Consensus 76 Dg~H~~~~~~~dl~~~~~~l~~g 98 (106)
T PF13578_consen 76 DGDHSYEAVLRDLENALPRLAPG 98 (106)
T ss_dssp ES---HHHHHHHHHHHGGGEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCC
Confidence 66655556666777777777764
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.11 Score=40.61 Aligned_cols=46 Identities=22% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~ 102 (169)
.|+.++.+..+..+..+++|.-||+|.+++.+++.+.+|+.-|+++
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~ 52 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINP 52 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-H
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechH
Confidence 3566777665433567999999999999999888888999999994
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.27 Score=34.81 Aligned_cols=43 Identities=26% Similarity=0.262 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCC-HHHHHHHHhCCeEEEEcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtG-l~~l~~a~~ga~V~~~D~~~ 102 (169)
.+|+|+.++. ...+|+|+|-|.= -++..+++.|..|++||+.+
T Consensus 3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 5788887653 2349999999955 66778888999999999996
|
; PDB: 2K4M_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.16 Score=41.32 Aligned_cols=69 Identities=14% Similarity=0.010 Sum_probs=44.7
Q ss_pred EEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 74 VVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 74 vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
|+||.||.|.+++.+.+.|.+ +.++|+++ .+.+.-+.|....-....+..+... . -..+|+++++-++-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~--~a~~ty~~N~~~~~~~~Di~~~~~~----~--~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDK--YAQKTYEANFGNKVPFGDITKISPS----D--IPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCH--HHHHHHHHhCCCCCCccChhhhhhh----h--CCCcCEEEecCCCc
Confidence 689999999999999999986 56799994 4777777765321111111111111 0 12579999887764
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.32 Score=38.38 Aligned_cols=71 Identities=11% Similarity=0.011 Sum_probs=47.4
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..+|+|||||.==+++..... ++.+++.|++ ..+++.+..-+...+...++... +......+...|+.+.-
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID--~~~ve~l~~~l~~l~~~~~~~v~---Dl~~~~~~~~~DlaLll 178 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDID--SQLVEFLNAFLAVLGVPHDARVR---DLLSDPPKEPADLALLL 178 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB--HHHHHHHHHHHHHTT-CEEEEEE----TTTSHTTSEESEEEEE
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCC--HHHHHHHHHHHHhhCCCcceeEe---eeeccCCCCCcchhhHH
Confidence 569999999988777755443 4699999999 56999998888877776654433 43333344466777753
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.53 Score=39.60 Aligned_cols=87 Identities=13% Similarity=0.032 Sum_probs=49.8
Q ss_pred CCeEEEECCCCCHHHHHHHHh------------C-----CeEEEEcCCCcH--HHHHHHH---HHH---H----HhCCcc
Q 030935 71 GANVVELGAGTSLPGLVAAKV------------G-----SNVTLTDDSNRI--EVLKNMR---RVC---E----MNKLNC 121 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~------------g-----a~V~~~D~~~~~--~~l~~~~---~n~---~----~n~~~~ 121 (169)
.-+|+|+|||+|..++.+... + .+|...|+..+. .+....- +.+ . ..+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 448999999999887655331 1 368888887540 1222211 100 0 011111
Q ss_pred eEEEEEcCCCCcCCC-CCCCcEEEEcCcCCCCCChHH
Q 030935 122 RVMGLTWGFLDASIF-DLNPNIILGADVFYDASGKIC 157 (169)
Q Consensus 122 ~~~~l~~~~~~~~~~-~~~fDlIi~sd~iy~~~~~~~ 157 (169)
-+....-|.+...++ +.+.+++.++-.+||....+.
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 123333355544444 458999999999999876554
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.47 Score=33.12 Aligned_cols=86 Identities=26% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCC-HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtG-l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
+++|+.... -+| +|.|+|.|-= -++-.++++|..|++||++++ +.. .++ ++. -++...+
T Consensus 4 ~a~~iAre~--~~g-kVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---------~a~-~g~--~~v---~DDitnP-- 63 (129)
T COG1255 4 VAEYIAREN--ARG-KVVEVGIGFFLDVAKRLAERGFDVLATDINEK---------TAP-EGL--RFV---VDDITNP-- 63 (129)
T ss_pred HHHHHHHHh--cCC-cEEEEccchHHHHHHHHHHcCCcEEEEecccc---------cCc-ccc--eEE---EccCCCc--
Confidence 455555332 133 9999999854 457788889999999999962 111 232 222 2233222
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHh
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICS 165 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~ 165 (169)
..-+=-++|.+|.....+.+.+.+.+.
T Consensus 64 --~~~iY~~A~lIYSiRpppEl~~~ildv 90 (129)
T COG1255 64 --NISIYEGADLIYSIRPPPELQSAILDV 90 (129)
T ss_pred --cHHHhhCccceeecCCCHHHHHHHHHH
Confidence 223334688899998888888877653
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.45 Score=38.94 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=59.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHH--HHHHHHHH--hCC---------------cceEEE------
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLK--NMRRVCEM--NKL---------------NCRVMG------ 125 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~--~~~~n~~~--n~~---------------~~~~~~------ 125 (169)
..+||==|||.|.++.-++..|..+-+-+.+-- |+- .-.-|.-. |.. +.++..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~--Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYF--MLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHH--HHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 457999999999999999999999888888732 332 11112111 110 000000
Q ss_pred -------------EEcCCCCcCCCC----CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 126 -------------LTWGFLDASIFD----LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 126 -------------l~~~~~~~~~~~----~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...|++.+-... ..||+|+..=.|=...+.-..+.+|...|+||
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~G 289 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPG 289 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCC
Confidence 111333222222 25999998744445567788899999999986
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.51 Score=39.60 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=30.4
Q ss_pred CeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
..|+|+|+|-|.++.+++- .|-.|.++|.+. ...+.++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq--~~~~ra~ 193 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ--RLVERAQ 193 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch--HHHHHHH
Confidence 4799999999999998875 566999999995 3544443
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.1 Score=35.86 Aligned_cols=95 Identities=21% Similarity=0.176 Sum_probs=52.9
Q ss_pred eEEEECCC---CCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCc--------CCCC-
Q 030935 73 NVVELGAG---TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDA--------SIFD- 137 (169)
Q Consensus 73 ~vLElGcG---tGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~--------~~~~- 137 (169)
..|||||| .|.+-..+.+. .++|+-+|.+ |-.+..++.-+..+.- ...+..-+..+... ...+
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D--Pvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND--PVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS--HHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC--chHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 69999999 45555544332 5699999999 5688888877665532 12233333322111 1111
Q ss_pred CCCcEEEEcCcCCCC---CChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
.++=.++...++++. ++...+++.+.+.|.||
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapG 183 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPG 183 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCC
Confidence 133356667888766 56788999999999987
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.69 E-value=1.1 Score=37.12 Aligned_cols=45 Identities=27% Similarity=0.272 Sum_probs=32.9
Q ss_pred cCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 66 ~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
....+|++|+=.|+| .|..++.+|+ +|++|+++|.++ +-++.+++
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~--~K~e~a~~ 208 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSE--EKLELAKK 208 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCCh--HHHHHHHH
Confidence 345578999999888 3455666676 789999999995 35555554
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.29 Score=37.28 Aligned_cols=35 Identities=20% Similarity=0.005 Sum_probs=29.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC-C--eEEEEcCCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG-S--NVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g-a--~V~~~D~~~ 102 (169)
..++.+|||+||..|..+..+.++. . .|.++|+-.
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 3478899999999999999998864 2 699999864
|
|
| >COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.26 Score=39.28 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=38.3
Q ss_pred HHHHHHHHhc-----cCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCC
Q 030935 56 VILAEYVWQQ-----RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 56 ~~La~~l~~~-----~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~ 102 (169)
+.|-.|+... ....+|+.+.||-+|||++|-.+.+.|..|++-|+..
T Consensus 8 ~~LlsFi~~~i~~~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHEVKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 4555666543 3456788999999999999999999999999999864
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.16 E-value=0.8 Score=39.40 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=43.9
Q ss_pred eEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHH-HHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLK-NMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~-~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
++|.+|||.--+...+-+-|. .|+.+|+|+. .++ ....|...+ ...+....+.. ...+.++.||+||.-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V--~V~~m~~~~~~~~-~~~~~~~~d~~--~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSV--VVAAMQVRNAKER-PEMQMVEMDMD--QLVFEDESFDIVIDK 121 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHH--HHHHHHhccccCC-cceEEEEecch--hccCCCcceeEEEec
Confidence 899999999999998888887 6999999963 444 333333211 11222222222 123455689998853
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.31 Score=40.51 Aligned_cols=98 Identities=14% Similarity=0.115 Sum_probs=58.4
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC--CC---cCCC-
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF--LD---ASIF- 136 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~--~~---~~~~- 136 (169)
.+.++.++|||+|.|.|....++-..-. .++.++.++ .+...-..++.|-.. ...+|.. +. .++.
T Consensus 109 ~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp---~lrkV~~tl~~nv~t---~~td~r~s~vt~dRl~lp~ 182 (484)
T COG5459 109 VPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASP---ALRKVGDTLAENVST---EKTDWRASDVTEDRLSLPA 182 (484)
T ss_pred CCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCH---HHHHHHHHHHhhccc---ccCCCCCCccchhccCCCc
Confidence 3567888999999998865444433322 677788774 555555555555322 1133432 11 1222
Q ss_pred CCCCcEEEEcCcCCCCCC---hHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASG---KICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~---~~~l~~~l~~~L~p~ 169 (169)
...|++|+..|=+-.... +...++.+...++||
T Consensus 183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~g 218 (484)
T COG5459 183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPG 218 (484)
T ss_pred cceeehhhhhhhhccccCcchHHHHHHHHHHhccCC
Confidence 237899998886665543 344677777777765
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.86 E-value=2.4 Score=36.02 Aligned_cols=83 Identities=11% Similarity=0.065 Sum_probs=55.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHH-hC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceE-EEEEcCCCCcCCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV-MGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~-~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~-~~l~~~~~~~~~~~~~fDlI 143 (169)
..+|.+|||+.|-.|.=+..+|. +. ..|++.|.+.. -+..++.|+++.|....+ ..++-..+....++.+||=|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~--r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNEN--RLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchH--HHHHHHHHHHHhCCCceEEEccCcccccccccCccccee
Confidence 44788999999998866555544 32 27999999964 889999999999876443 22322222222233489998
Q ss_pred E----EcC--cCCCC
Q 030935 144 L----GAD--VFYDA 152 (169)
Q Consensus 144 i----~sd--~iy~~ 152 (169)
+ ||- +++-.
T Consensus 317 LLDAPCSGtgvi~K~ 331 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKD 331 (460)
T ss_pred eecCCCCCCcccccc
Confidence 8 555 55533
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=90.75 E-value=0.71 Score=36.71 Aligned_cols=42 Identities=24% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-------CeEEEEcCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSN 102 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-------a~V~~~D~~~ 102 (169)
.|.+..-..++..++|+|||.|.+|.++++.- ..++++|...
T Consensus 9 ~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 9 NLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred HHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 34433323355689999999999999888743 3799999864
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.5 Score=36.05 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=45.3
Q ss_pred CCeEEEECCCCCHHHHHHHHh------------C------CeEEEEcCCCc--HHHHHHHHHHHHH-hCCcceEEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNR--IEVLKNMRRVCEM-NKLNCRVMGLTWG 129 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~------------g------a~V~~~D~~~~--~~~l~~~~~n~~~-n~~~~~~~~l~~~ 129 (169)
.-+|+|+||.+|--++.+... + .+|+..|+..+ -.+...+-.+.+. .....-+....-|
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvpg 96 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVPG 96 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEES
T ss_pred ceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecCc
Confidence 348999999999988876542 2 27999999865 0122222222111 0122223334456
Q ss_pred CCCcCCCC-CCCcEEEEcCcCCCCCChH
Q 030935 130 FLDASIFD-LNPNIILGADVFYDASGKI 156 (169)
Q Consensus 130 ~~~~~~~~-~~fDlIi~sd~iy~~~~~~ 156 (169)
.+...+++ .+.|+++++-.+||....+
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP 124 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVP 124 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-
T ss_pred hhhhccCCCCceEEEEEechhhhcccCC
Confidence 66555544 5899999999999887654
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.7 Score=35.38 Aligned_cols=66 Identities=6% Similarity=-0.092 Sum_probs=49.9
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
+|.+-+.......++...+|.--|.|.-+..+.+.. .+++++|.+ +.+++.+++.+..++..+.+.
T Consensus 10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD--~~Ai~~a~~~l~~~~~r~~~v 78 (314)
T COG0275 10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRD--PQAIAIAKERLKEFDGRVTLV 78 (314)
T ss_pred hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCC--HHHHHHHHHHhhccCCcEEEE
Confidence 344444455555567899999999999998887764 479999999 569999999888776555444
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.4 Score=35.75 Aligned_cols=78 Identities=17% Similarity=0.124 Sum_probs=50.5
Q ss_pred CCCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CCC-
Q 030935 67 YRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SIF- 136 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~~- 136 (169)
...+|+.||==|.|.|+ +++.+|++|++++..|+++. ..+...+.++.+| .+.....+..+.++ ...
T Consensus 34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~--~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQ--GNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEecccc--chHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHHH
Confidence 34678899999999995 56777889999999999974 5555555555554 33333333333222 011
Q ss_pred -CCCCcEEEEcC
Q 030935 137 -DLNPNIILGAD 147 (169)
Q Consensus 137 -~~~fDlIi~sd 147 (169)
-...|+++.+-
T Consensus 111 e~G~V~ILVNNA 122 (300)
T KOG1201|consen 111 EVGDVDILVNNA 122 (300)
T ss_pred hcCCceEEEecc
Confidence 13788888655
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.99 Score=37.14 Aligned_cols=76 Identities=13% Similarity=0.135 Sum_probs=48.0
Q ss_pred EEECCCCCHH-HHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-------CcCCCCCCCcEEEE
Q 030935 75 VELGAGTSLP-GLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-------DASIFDLNPNIILG 145 (169)
Q Consensus 75 LElGcGtGl~-~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-------~~~~~~~~fDlIi~ 145 (169)
+|+|.|+-.+ .+.-+. .+...++||+++. .++.++.|+..|++.-.+....-... .....+..||+..|
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~--s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDM--SFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeecccc--ccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 6887775433 222233 3447999999975 89999999999998643332222111 01112336999999
Q ss_pred cCcCCCC
Q 030935 146 ADVFYDA 152 (169)
Q Consensus 146 sd~iy~~ 152 (169)
+.++|..
T Consensus 185 NPPFfe~ 191 (419)
T KOG2912|consen 185 NPPFFEN 191 (419)
T ss_pred CCchhhc
Confidence 9998855
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=89.01 E-value=2.5 Score=36.88 Aligned_cols=93 Identities=19% Similarity=0.220 Sum_probs=53.8
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC-----------CCcC-
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF-----------LDAS- 134 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~-----------~~~~- 134 (169)
.++.+|+=+||| .|+..+.+++ +|++|++.|.++ +-++.++. .+.. +..++..+ ....
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~--~rle~a~~----lGa~--~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP--EVKEQVQS----MGAE--FLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHH----cCCe--EEeccccccccccccceeecCHHH
Confidence 356799999998 6677665555 688999999984 35554443 2222 11122100 0000
Q ss_pred -------CC--CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 -------IF--DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 -------~~--~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. -..+|+||.+-.+--.....-+.+...+.+|||
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG 277 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG 277 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC
Confidence 00 136899998776644333333666667777775
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.6 Score=30.86 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=43.9
Q ss_pred CCCCCCeEEEECCCC-C-HHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAGT-S-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcGt-G-l~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
..++++++|=+|+|- | .+...++..|+ +|+.+..+. +-.+...+.+ ....+....|.+.... -.++|+|
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~--~ra~~l~~~~----~~~~~~~~~~~~~~~~--~~~~Div 79 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP--ERAEALAEEF----GGVNIEAIPLEDLEEA--LQEADIV 79 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH--HHHHHHHHHH----TGCSEEEEEGGGHCHH--HHTESEE
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH--HHHHHHHHHc----CccccceeeHHHHHHH--HhhCCeE
Confidence 356899999999982 2 33334555687 599998873 2333322222 1122344566654311 2378999
Q ss_pred EEcCcCCCC
Q 030935 144 LGADVFYDA 152 (169)
Q Consensus 144 i~sd~iy~~ 152 (169)
|.+-..=..
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 987655433
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=88.17 E-value=0.21 Score=40.71 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=41.0
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
-+.+.....++...+|.--|.|.-+..+++. +.+|++.|.+ +++++.++++++.......+.
T Consensus 11 Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD--~~a~~~a~~~l~~~~~r~~~~ 74 (310)
T PF01795_consen 11 EVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRD--PEALERAKERLKKFDDRFIFI 74 (310)
T ss_dssp HHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES---HHHHHHHHCCTCCCCTTEEEE
T ss_pred HHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCC--HHHHHHHHHHHhhccceEEEE
Confidence 3333334456779999999999999988864 3599999999 679999988776544333333
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=4.5 Score=34.63 Aligned_cols=75 Identities=19% Similarity=0.303 Sum_probs=43.4
Q ss_pred CCCCCCeEEEECCC-CCHHH-HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~-l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...++++|+=+|+| +|+-. ..++++|.+|+++|..+. .......+.++..++.+. .+.... ....+|+||
T Consensus 12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~-~~~~~~~~~l~~~gv~~~-----~~~~~~--~~~~~D~Vv 83 (480)
T PRK01438 12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD-ERHRALAAILEALGATVR-----LGPGPT--LPEDTDLVV 83 (480)
T ss_pred cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-hhhHHHHHHHHHcCCEEE-----ECCCcc--ccCCCCEEE
Confidence 34567899999987 44432 244456889999997752 334444444555565432 111111 223679888
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
.+--+
T Consensus 84 ~s~Gi 88 (480)
T PRK01438 84 TSPGW 88 (480)
T ss_pred ECCCc
Confidence 76544
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=87.77 E-value=5.6 Score=30.57 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=45.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-----CCC--
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-----SIF-- 136 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-----~~~-- 136 (169)
+.+.|+|+|.-.|.-.++.|.+ | .+|+++|++-+ ...+..++.+.+..++. +..|+... ...
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir----~~~~~a~e~hp~~~rI~-~i~Gds~d~~~~~~v~~~ 106 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIR----PHNRKAIESHPMSPRIT-FIQGDSIDPEIVDQVREL 106 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GT----T--S-GGGG----TTEE-EEES-SSSTHHHHTSGSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcc----hhchHHHhhccccCceE-EEECCCCCHHHHHHHHHh
Confidence 4579999999999988877652 2 48999999632 11122233333322222 33343221 111
Q ss_pred --CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 --DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 --~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.....+| .-|.=|.....-..++.....++||
T Consensus 107 ~~~~~~vlV-ilDs~H~~~hvl~eL~~y~plv~~G 140 (206)
T PF04989_consen 107 ASPPHPVLV-ILDSSHTHEHVLAELEAYAPLVSPG 140 (206)
T ss_dssp ----SSEEE-EESS----SSHHHHHHHHHHT--TT
T ss_pred hccCCceEE-EECCCccHHHHHHHHHHhCccCCCC
Confidence 1233444 4688888888888888888888876
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.52 E-value=3.7 Score=32.50 Aligned_cols=61 Identities=20% Similarity=0.261 Sum_probs=48.6
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.+.|...+... ....+..|||--+|+|..++++.+.|-+.++.+++ ++.++.+.+.+....
T Consensus 208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~--~~y~~~~~~r~~~~~ 268 (302)
T COG0863 208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEIN--PEYVEVALKRLQEGL 268 (302)
T ss_pred hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecC--HHHHHHHHHHHHhhc
Confidence 44555555544 45578899999999999999999999999999999 568888887776543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=87.09 E-value=1.5 Score=37.22 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=33.9
Q ss_pred CcceeecchHHHHHHHHHhc-cCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 46 EYGLFVWPCSVILAEYVWQQ-RYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~-~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
++|..+|.+ +.+. ...+.|++|+=+|+| .|......++ .|++|+++|.++
T Consensus 183 g~g~s~~~~-------i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 183 GCRESLIDG-------IKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred hhchhhHHH-------HHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 456666654 3333 234689999999999 4554444444 588999999985
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=86.56 E-value=2.6 Score=34.95 Aligned_cols=44 Identities=30% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 67 YRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 67 ~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
...++.+||.+|||. |...+.+|+ .|. +|++++.++ +.++.+++
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~--~~~~~~~~ 227 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVP--ERLEMARS 227 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHH
Confidence 345788999999875 666666666 466 599999984 46666665
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.27 E-value=8.9 Score=30.76 Aligned_cols=44 Identities=16% Similarity=0.320 Sum_probs=27.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHH-HH--HHHHhCC-eEEEEcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLP-GL--VAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~-~l--~~a~~ga-~V~~~D~~~ 102 (169)
+..-+.+.....+++++|=+|+| |.- ++ .+++.|+ +|+.++.+.
T Consensus 113 ~~~~l~~~~~~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 113 FVRNLREHGVDVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred HHHHHHhcCCCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 33344433334578899999997 432 22 2345677 599998874
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.25 E-value=4 Score=32.33 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=52.8
Q ss_pred CCCCeEEEECCC-CCHHHH-HHHHhCC-eEEEEcCCCcHHHH-------------------HHHHHHHHHhCCcceEEEE
Q 030935 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEVL-------------------KNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l-~~a~~ga-~V~~~D~~~~~~~l-------------------~~~~~n~~~n~~~~~~~~l 126 (169)
++...|+=+|+| .|-..+ +|++.|- +++.+|.+.- .+ +.+++.++.-+..|++..+
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v--~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~ 105 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV--CVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAI 105 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccc--cccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeeh
Confidence 466789999988 666655 5666775 8999998752 12 2333334433445555433
Q ss_pred E--cCC-CCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 127 T--WGF-LDASIFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 127 ~--~~~-~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
+ |.. ..+.+....||+|| |++=+...--+|+..+.+
T Consensus 106 ~~f~t~en~~~~~~~~~DyvI--DaiD~v~~Kv~Li~~c~~ 144 (263)
T COG1179 106 NDFITEENLEDLLSKGFDYVI--DAIDSVRAKVALIAYCRR 144 (263)
T ss_pred HhhhCHhHHHHHhcCCCCEEE--EchhhhHHHHHHHHHHHH
Confidence 2 111 11123345899999 566555555556655544
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.22 E-value=2.8 Score=34.52 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=32.1
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
.++.+|+=+||| .|++++.+++ .|+ +|+++|.++ +=++.|++
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~--~Rl~~A~~ 211 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP--ERLELAKE 211 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH--HHHHHHHH
Confidence 344489999999 7999887777 465 899999995 46666654
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.81 Score=35.30 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=32.3
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-...|||||-|.+-+.++.+.. -+.+.++-.+ +-+..++.++.
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~K--VsdYVk~RI~A 106 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDK--VSDYVKERIQA 106 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHH--HHHHHHHHHHH
Confidence 3689999999999998888765 4888888643 66666666543
|
|
| >PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed | Back alignment and domain information |
|---|
Probab=85.48 E-value=2.7 Score=28.66 Aligned_cols=55 Identities=11% Similarity=0.049 Sum_probs=27.4
Q ss_pred eEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
+|| +-||+|..+-.++ +..++.++.+|++..+................+|+|+.+
T Consensus 3 kIL-lvCg~G~STSlla------------------~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~ 57 (104)
T PRK09590 3 KAL-IICAAGMSSSMMA------------------KKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS 57 (104)
T ss_pred EEE-EECCCchHHHHHH------------------HHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC
Confidence 344 7788887554433 333444555666655443333322111122356777765
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.46 E-value=5.2 Score=31.06 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=24.8
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+|+=+||| .| .+...+++.|. +++.+|.+.
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 366799999999 34 34556677786 799998653
|
|
| >KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.35 E-value=5.6 Score=33.19 Aligned_cols=91 Identities=15% Similarity=0.116 Sum_probs=48.1
Q ss_pred CCCCeEEEECCC-CCHHHH-HHHHhCC-eEEEEcCCCcHHH------------------HHHHHHHHHHhCCcceEEEEE
Q 030935 69 FSGANVVELGAG-TSLPGL-VAAKVGS-NVTLTDDSNRIEV------------------LKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l-~~a~~ga-~V~~~D~~~~~~~------------------l~~~~~n~~~n~~~~~~~~l~ 127 (169)
+++..||=+||| -|.+++ +++..|. ++=.+|.+.. ++ .+.|+.++...+-.+.+..+.
T Consensus 64 Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvV-e~sNlhRQVlh~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~ 142 (427)
T KOG2017|consen 64 LKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVV-ELSNLHRQVLHTEARVGMHKAESAAAFLRRLNSHVEVQTYN 142 (427)
T ss_pred cCCccEEEEccCCCCCHHHHHHHHcCCCeeccccccee-ehhhHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCceeeech
Confidence 355689999998 677765 5666665 6666666531 00 122333333334344443332
Q ss_pred cCCCCcCCCC--CCCcEEE-EcCcCCCCCChHHHHH
Q 030935 128 WGFLDASIFD--LNPNIIL-GADVFYDASGKICAFE 160 (169)
Q Consensus 128 ~~~~~~~~~~--~~fDlIi-~sd~iy~~~~~~~l~~ 160 (169)
-.-.....+. ..||+|+ |+|-++....+.+..-
T Consensus 143 ~~L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CV 178 (427)
T KOG2017|consen 143 EFLSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCV 178 (427)
T ss_pred hhccchhHHHHhhccceEEEcCCCccchhhhhhHHH
Confidence 1111111111 3899998 7777765555444433
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.33 E-value=0.62 Score=40.21 Aligned_cols=91 Identities=20% Similarity=0.128 Sum_probs=58.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE--cCCC--CcCCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT--WGFL--DASIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~--~~~~--~~~~~~~~fDl 142 (169)
++.+|||-=|+||+=++-.|+. |. +|++.|.++ ..++.+++|++.|+....+.... .... ........||+
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~--~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNE--NAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCH--HHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 4568999999999999987774 33 799999995 59999999999997653332111 1110 01112358888
Q ss_pred EEEcCcCCCC-CChHHHHHHHH
Q 030935 143 ILGADVFYDA-SGKICAFEILI 163 (169)
Q Consensus 143 Ii~sd~iy~~-~~~~~l~~~l~ 163 (169)
|=. |++=.+ ..+++.++.+.
T Consensus 187 IDL-DPyGs~s~FLDsAvqav~ 207 (525)
T KOG1253|consen 187 IDL-DPYGSPSPFLDSAVQAVR 207 (525)
T ss_pred Eec-CCCCCccHHHHHHHHHhh
Confidence 853 443322 22566666554
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=84.29 E-value=6.1 Score=29.22 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCC--CCH-HHHHHHHhCCeEEEEcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAG--TSL-PGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcG--tGl-~~l~~a~~ga~V~~~D~~~ 102 (169)
..+++.+....+++++||=+|+| .|. +...+.+.|++|+.++...
T Consensus 31 ~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 33444444456789999999999 376 5556667888999988773
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=83.94 E-value=8.7 Score=28.34 Aligned_cols=102 Identities=12% Similarity=0.032 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHH-HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVA-AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~-a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
.+..|++.+.+... .+.+|+=|||=+-...+.- ...+.++.+.|++.+ .+..+.+ .+...+.....
T Consensus 11 T~~~l~~~l~~~~~--~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~R----------F~~~~~~-~F~fyD~~~p~ 77 (162)
T PF10237_consen 11 TAEFLARELLDGAL--DDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRR----------FEQFGGD-EFVFYDYNEPE 77 (162)
T ss_pred HHHHHHHHHHHhcC--CCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecch----------HHhcCCc-ceEECCCCChh
Confidence 45667777766432 4578999998766555544 123448999999964 3333322 23334444322
Q ss_pred cC--CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 133 AS--IFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 133 ~~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.. ....+||+||+-.++...+......+++..+++|
T Consensus 78 ~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~ 115 (162)
T PF10237_consen 78 ELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKP 115 (162)
T ss_pred hhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCc
Confidence 11 1245999999844444445556667777777665
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=8.1 Score=29.55 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=45.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC-------C
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI-------F 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~-------~ 136 (169)
++++++|=.|++.|+ ++..+++.|++|++++.++ +.++.+.+.++..+........+-.+... .. .
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQ--SALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 467899999999886 3345566789999998874 45655555454444333333333222211 00 1
Q ss_pred CCCCcEEEEcC
Q 030935 137 DLNPNIILGAD 147 (169)
Q Consensus 137 ~~~fDlIi~sd 147 (169)
..++|+++.+-
T Consensus 81 g~~iD~li~na 91 (227)
T PRK08862 81 NRAPDVLVNNW 91 (227)
T ss_pred CCCCCEEEECC
Confidence 12789988765
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=83.17 E-value=6 Score=29.98 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=25.2
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
+++++||=+||| .| .+...+++.|. +++.+|.+
T Consensus 19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 467899999998 33 44556677786 89999987
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.04 E-value=10 Score=29.00 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=45.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++++++|=.|+ +|.+|..+++ .|++|++++.++ +.++.+...++..+.++.....+..+... ...
T Consensus 8 ~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 8 LTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDP--AKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 57889999995 5666665544 588999999884 34554545554444334333344433211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.+.|+||.+--..
T Consensus 85 ~~~~d~li~~ag~~ 98 (255)
T PRK07523 85 IGPIDILVNNAGMQ 98 (255)
T ss_pred cCCCCEEEECCCCC
Confidence 12679988776544
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=82.52 E-value=3 Score=35.16 Aligned_cols=100 Identities=10% Similarity=0.003 Sum_probs=55.0
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHH--HHHHHH---HHhCCcceEEEEEcCCCCcCC----C
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLK--NMRRVC---EMNKLNCRVMGLTWGFLDASI----F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~--~~~~n~---~~n~~~~~~~~l~~~~~~~~~----~ 136 (169)
..++....|||+|.|-+-.++|..++ .-+++++...+.-+. +.+.+. +..|.........-+++..+- .
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 44666889999999977776665443 566777665432222 222221 222333333334444432211 1
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
....++|+.+.+-|+++..-.+- .+.+.+++
T Consensus 270 ~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~ 300 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFDPELKLRSK-EILQKCKD 300 (419)
T ss_pred hhcceEEEEecccCCHHHHHhhH-HHHhhCCC
Confidence 23679999999999886654444 33333333
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.76 E-value=7 Score=31.69 Aligned_cols=43 Identities=26% Similarity=0.285 Sum_probs=27.4
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
...++.+||=.||| .|+.++.+++ +|+ +|+++|.++ +-++.++
T Consensus 166 ~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~--~~~~~a~ 211 (343)
T PRK09880 166 GDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP--RSLSLAR 211 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH--HHHHHHH
Confidence 34468889888875 3344444444 477 699999884 3555554
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=11 Score=28.83 Aligned_cols=80 Identities=13% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++++++|=.|++.|+-. ..+++.|++|++++.+. +-++.....++..+........+..+... ... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHL--DALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCH--HHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46889999998766432 23345688999999874 45555555554444333333344333211 000 1
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.++|+++.+--+.
T Consensus 85 g~id~lv~~ag~~ 97 (253)
T PRK05867 85 GGIDIAVCNAGII 97 (253)
T ss_pred CCCCEEEECCCCC
Confidence 3789998765443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=81.49 E-value=8.5 Score=30.02 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=25.1
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~ 102 (169)
+++.+||=+||| .| .+...+++.|. +++.+|.+.
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~ 45 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDV 45 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 356789999998 44 44556677776 899999774
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=81.41 E-value=3.8 Score=35.38 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=33.6
Q ss_pred CCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Q 030935 71 GANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~ 114 (169)
.-+++||-||.|.+++.+-..|. .|.++|+++ .+.+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~--~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNK--HAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechH--HHHHHHHHHc
Confidence 34899999999999999988888 478899984 4666666664
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=81.19 E-value=6.9 Score=32.14 Aligned_cols=42 Identities=26% Similarity=0.321 Sum_probs=26.1
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~ 110 (169)
...++.+||=.|+| .|...+.+|+ +|+ +|+++|.++ +-++.+
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~--~r~~~a 232 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNE--DKLALA 232 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCH--HHHHHH
Confidence 34567888888875 3333344444 577 699999884 344444
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=81.09 E-value=7.6 Score=31.58 Aligned_cols=43 Identities=30% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
...++.+||=+||| .|...+.+|+ .|++|++++.++ +-++.++
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~--~~~~~~~ 207 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP--EKLEMMK 207 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCH--HHHHHHH
Confidence 44568899999984 2444444444 577999999884 3444443
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.80 E-value=8 Score=30.41 Aligned_cols=35 Identities=34% Similarity=0.490 Sum_probs=22.8
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCCe-EEEEcCCC
Q 030935 68 RFSGANVVELGAG-TSLPGLVAAK-VGSN-VTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl~~l~~a~-~ga~-V~~~D~~~ 102 (169)
..++.+||=.|+| .|+..+.+|+ +|++ |+++|.++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~ 155 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 3478889888875 3333344444 4775 99998774
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=80.69 E-value=6.8 Score=31.87 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=26.3
Q ss_pred CCCCeEEEECCC-CCHHHHHHHH--hC-CeEEEEcCCCcHHHHHHHH
Q 030935 69 FSGANVVELGAG-TSLPGLVAAK--VG-SNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~--~g-a~V~~~D~~~~~~~l~~~~ 111 (169)
.+|.+||=+||| .|+..+.+++ .| ++|+++|.++ +-++.++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~--~k~~~a~ 206 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQ--EKLDLFS 206 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcH--hHHHHHh
Confidence 468899999976 4444444454 34 4899999884 3444444
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=80.61 E-value=12 Score=28.48 Aligned_cols=33 Identities=24% Similarity=0.267 Sum_probs=25.6
Q ss_pred CCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCC
Q 030935 69 FSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 69 ~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~ 101 (169)
++.++|+=+||| .| .++..+++.|. +++.+|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 467799999998 33 45567777887 79999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.54 E-value=2.2 Score=34.76 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCC---CCcCCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGF---LDASIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~---~~~~~~~~~fDl 142 (169)
..++||=+|-|-|-+-...++.-. ++..+|++++ +++..+.-...- +....-..+.-|+ +.+.....+||+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~--Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDEN--VIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHH--HHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 446899999998877766666532 7999999853 777666554322 2221112233343 222334569999
Q ss_pred EE--EcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 143 IL--GADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii--~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
|| ++|++=... ...+.++.+.++|||+
T Consensus 199 ii~dssdpvgpa~~lf~~~~~~~v~~aLk~d 229 (337)
T KOG1562|consen 199 IITDSSDPVGPACALFQKPYFGLVLDALKGD 229 (337)
T ss_pred EEEecCCccchHHHHHHHHHHHHHHHhhCCC
Confidence 99 566664332 2467889999999985
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=80.45 E-value=12 Score=32.39 Aligned_cols=78 Identities=6% Similarity=-0.007 Sum_probs=49.5
Q ss_pred CCCeEEEECCCCCHHHHHHHH---hCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-C--CCCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAK---VGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-S--IFDLNP 140 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~---~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~--~~~~~f 140 (169)
++..|.|.-||+|..-+...+ .|. .+++.+.. +.+...++.|...++.........+++... + ....+|
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~--~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~ 294 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEIN--HTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGF 294 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCc--hHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccC
Confidence 456899999999976654433 122 58888888 458999999988776543211222333222 1 123479
Q ss_pred cEEEEcCcC
Q 030935 141 NIILGADVF 149 (169)
Q Consensus 141 DlIi~sd~i 149 (169)
|+|+++++.
T Consensus 295 D~v~~NpPf 303 (501)
T TIGR00497 295 EVVVSNPPY 303 (501)
T ss_pred CEEeecCCc
Confidence 999987654
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.08 E-value=20 Score=28.57 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=49.5
Q ss_pred CceEEEEeccccCCcceeecch-HHHHHHHHH---hccCCCCCCeEEEECCCCCHHHHHHHH-hCC--eEEEEcCCCc--
Q 030935 33 PSFSIAIIENMKEEYGLFVWPC-SVILAEYVW---QQRYRFSGANVVELGAGTSLPGLVAAK-VGS--NVTLTDDSNR-- 103 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~-~~~La~~l~---~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga--~V~~~D~~~~-- 103 (169)
.+.+|.+... .+..-+++|.. --.||.-+. .+....+|.+||=||+++|..=-..+- -|. -|.+++.++.
T Consensus 116 gEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsG 194 (317)
T KOG1596|consen 116 GEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSG 194 (317)
T ss_pred CceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccch
Confidence 4555666544 45788999986 223443333 345566899999999999964333333 344 6888988864
Q ss_pred HHHHHHHHH
Q 030935 104 IEVLKNMRR 112 (169)
Q Consensus 104 ~~~l~~~~~ 112 (169)
.+++..|++
T Consensus 195 RdL~nmAkk 203 (317)
T KOG1596|consen 195 RDLINMAKK 203 (317)
T ss_pred HHHHHHhhc
Confidence 235555543
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.05 E-value=3.5 Score=35.49 Aligned_cols=86 Identities=16% Similarity=0.108 Sum_probs=51.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHH--HHhCC--eEEEEcCCCcHHHHHHHHHHHHH--hCCcceEEEEEcCCCCcCCCCC-C
Q 030935 67 YRFSGANVVELGAGTSLPGLVA--AKVGS--NVTLTDDSNRIEVLKNMRRVCEM--NKLNCRVMGLTWGFLDASIFDL-N 139 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~--a~~ga--~V~~~D~~~~~~~l~~~~~n~~~--n~~~~~~~~l~~~~~~~~~~~~-~ 139 (169)
+.++...++++|+|.|--+-++ ...+. .++.+|-+ ..|+.+...+... +....-+..+..-+...+.... .
T Consensus 197 p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs--~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~ 274 (491)
T KOG2539|consen 197 PKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRS--RAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNG 274 (491)
T ss_pred cccChHHHHHHHhhcccchhhhhhhcccccceeEeeccc--hHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccc
Confidence 3445567888988866443333 33332 68999999 4588888777654 2222222222222222233333 5
Q ss_pred CcEEEEcCcCCCCCC
Q 030935 140 PNIILGADVFYDASG 154 (169)
Q Consensus 140 fDlIi~sd~iy~~~~ 154 (169)
||+|||+..++...+
T Consensus 275 yDlvi~ah~l~~~~s 289 (491)
T KOG2539|consen 275 YDLVICAHKLHELGS 289 (491)
T ss_pred eeeEEeeeeeeccCC
Confidence 999999999987644
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.02 E-value=14 Score=27.85 Aligned_cols=80 Identities=15% Similarity=0.085 Sum_probs=45.4
Q ss_pred CCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
..+++||=.|+ +|.+|..++ +.|++|++++.+. .-+......+...+.+..+...++.+... ...
T Consensus 4 ~~~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 4 LEGRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICG--DDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 35678997886 566666544 4578999998874 34444444454444344444444443211 000
Q ss_pred CCCCcEEEEcCcCCC
Q 030935 137 DLNPNIILGADVFYD 151 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~ 151 (169)
-.++|+|+.+--.+.
T Consensus 81 ~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 81 FGRLDILVANAGIFP 95 (251)
T ss_pred hCCCCEEEECCCCCC
Confidence 126899887765544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 169 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 1e-26 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 1e-26
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 22/176 (12%)
Query: 8 KDEDEMTDKHMTTVSQHYFVDESDKPSFSIAIIENMKEE-YGLFVWPCSVILAEYVWQQR 66
+ + + + Y S+ + + + VW + LA+ + Q
Sbjct: 16 GTPPDFYRERQRSRVERYQSPAGAPLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQP 75
Query: 67 YRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLN----- 120
+G V ELGAG L +VA G V TD + E+L ++ + N
Sbjct: 76 ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDP-EILNSLESNIREHTANSCSSE 134
Query: 121 ------CRVMGLTWGFLDASIFDLNP----NIILGADVFYDASGKICAFEILICSL 166
+V+ WG S+ ++L AD+ A + L+ S+
Sbjct: 135 TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ----AHDALLRSV 186
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 169 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.86 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.68 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.66 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.66 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.66 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.64 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.62 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.61 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.61 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.61 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.61 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.61 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.61 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.6 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.6 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.6 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.59 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.58 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.58 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.58 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.57 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.57 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.57 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.57 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.57 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.57 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.56 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.56 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.56 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.56 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.56 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.56 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.56 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.55 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.55 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.55 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.55 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.54 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.54 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.53 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.53 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.53 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.53 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.53 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.52 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.52 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.52 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.52 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.52 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.52 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.52 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.52 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.52 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.51 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.51 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.51 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.51 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.51 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.51 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.5 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.5 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.5 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.5 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.49 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.49 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.49 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.49 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.48 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.48 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.48 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.48 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.48 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.48 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.47 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.47 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.47 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.47 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.47 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.47 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.46 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.46 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.46 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.46 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.46 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.46 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.46 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.45 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.45 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.45 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.45 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.44 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.44 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.44 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.44 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.43 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.43 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.43 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.43 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.43 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.43 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.43 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.42 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.42 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.41 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.41 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.41 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.41 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.41 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.41 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.4 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.4 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.4 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.4 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.4 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.39 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.39 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.38 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.38 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.38 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.37 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.37 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.37 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.37 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.37 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.37 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.37 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.36 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.36 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.35 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.35 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.35 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.35 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.35 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.34 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.34 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.34 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.34 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.33 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.33 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.33 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.33 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.33 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.33 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.33 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.33 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.32 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.32 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.32 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.32 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.32 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.31 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.31 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.31 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.31 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.3 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.29 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.28 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.28 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.28 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.28 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.28 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.27 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.27 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.27 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.27 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.27 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.27 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.27 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.27 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.26 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.26 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.26 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.25 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.25 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.24 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.24 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.24 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.22 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.22 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.21 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.21 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.21 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.2 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.19 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.19 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.19 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.18 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.17 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.17 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.17 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.17 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.16 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.16 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.15 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.14 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.13 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.12 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.12 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.11 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.11 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.11 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.1 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.1 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.1 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.1 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.1 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.09 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.09 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.09 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.08 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.08 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.07 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.07 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.06 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.05 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.05 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.04 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.04 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.04 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.04 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.04 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.03 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.03 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.02 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.01 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.0 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.0 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.99 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.99 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.98 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.97 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.96 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.96 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.96 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.95 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.94 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.93 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.92 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.91 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.91 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.9 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.9 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.9 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.88 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.86 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 98.84 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.82 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.79 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.79 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 98.77 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.77 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.74 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.74 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.69 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.66 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.66 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.65 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 98.65 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.65 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.61 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.6 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.58 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.56 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.43 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.38 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.37 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.33 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.31 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.25 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.23 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.99 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.99 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.91 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.88 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.81 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.76 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.75 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.73 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 97.72 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.63 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 97.52 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.42 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.38 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.33 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.21 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.21 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.18 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.18 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.09 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 96.72 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 96.64 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.45 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.27 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.18 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.06 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.93 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 95.91 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.53 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.4 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.37 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 95.28 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.18 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.39 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.1 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 93.98 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 93.59 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 93.51 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 93.44 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.06 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 92.68 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 92.23 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.2 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.14 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 91.96 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 91.8 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 91.5 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 91.37 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 91.34 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.25 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 91.16 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 91.12 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 90.82 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 90.79 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 90.75 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.69 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 90.21 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 90.16 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 89.98 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 89.76 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 89.38 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 89.09 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 89.02 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 88.91 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 88.88 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 88.88 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 88.76 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 88.7 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 88.24 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 88.21 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 88.15 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 88.07 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 87.99 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 87.94 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.67 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 87.61 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 87.58 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 87.47 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 87.41 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 87.05 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 86.99 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 86.86 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 86.68 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 85.79 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 85.74 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 85.74 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 85.61 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 85.41 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 85.34 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 85.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 84.95 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 84.67 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 84.65 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 84.55 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.34 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 84.32 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 84.3 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 84.23 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 84.2 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 83.98 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 83.86 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 83.67 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 83.49 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 83.44 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 83.4 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 83.32 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 83.05 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 82.69 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 82.28 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 82.25 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 82.1 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 81.93 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 81.89 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 81.76 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 81.62 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 81.58 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 81.45 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 81.11 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 81.08 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 80.93 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 80.86 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 80.8 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 80.75 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 80.37 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 80.09 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 80.03 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 80.02 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=154.47 Aligned_cols=122 Identities=24% Similarity=0.254 Sum_probs=95.2
Q ss_pred cCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcC-CCcHHHHHHHHHHH-----HH
Q 030935 44 KEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDD-SNRIEVLKNMRRVC-----EM 116 (169)
Q Consensus 44 ~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~-~~~~~~l~~~~~n~-----~~ 116 (169)
...+|..+||++..|++++..+....++++|||||||+|.+++.+++.|+ +|+++|+ + +.+++.+++|+ +.
T Consensus 53 ~~~~g~~~~~~~~~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~--~~~~~~a~~n~~~N~~~~ 130 (281)
T 3bzb_A 53 HPLWTSHVWSGARALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPD--PEILNSLESNIREHTANS 130 (281)
T ss_dssp ---------CHHHHHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSC--HHHHHHHHHHHHTTCC--
T ss_pred CCCCCceeecHHHHHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCC--HHHHHHHHHHHHHhhhhh
Confidence 45689999999999999999887667889999999999999999999988 8999999 7 57999999999 44
Q ss_pred hCC------cceEEEEEcCCCCcCC----CCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 117 NKL------NCRVMGLTWGFLDASI----FDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 117 n~~------~~~~~~l~~~~~~~~~----~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
+++ .+.+..++|++..... ...+||+|+++|++|+....+.+++.+.+.|+
T Consensus 131 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 131 CSSETVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLA 191 (281)
T ss_dssp --------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBC
T ss_pred cccccCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhc
Confidence 443 3556667798753322 24689999999999999999999999999999
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-16 Score=131.43 Aligned_cols=104 Identities=19% Similarity=0.221 Sum_probs=85.4
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNP 140 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~f 140 (169)
|.++...++|++|||||||||++++++|+.|| +|+++|.++ +++.|+++++.|++..++. +..++......+.+|
T Consensus 75 i~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~---~~~~a~~~~~~n~~~~~i~-~i~~~~~~~~lpe~~ 150 (376)
T 4hc4_A 75 ILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA---IWQQAREVVRFNGLEDRVH-VLPGPVETVELPEQV 150 (376)
T ss_dssp HHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEE-EEESCTTTCCCSSCE
T ss_pred HHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH---HHHHHHHHHHHcCCCceEE-EEeeeeeeecCCccc
Confidence 55555667899999999999999999999998 799999984 8899999999999876554 334554443445799
Q ss_pred cEEEE---cCcCCCCCChHHHHHHHHHhccCC
Q 030935 141 NIILG---ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~---sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+|++ ...+.+...++.++....+.|+|+
T Consensus 151 DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~ 182 (376)
T 4hc4_A 151 DAIVSEWMGYGLLHESMLSSVLHARTKWLKEG 182 (376)
T ss_dssp EEEECCCCBTTBTTTCSHHHHHHHHHHHEEEE
T ss_pred cEEEeecccccccccchhhhHHHHHHhhCCCC
Confidence 99998 556677889999999999999985
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=118.47 Aligned_cols=111 Identities=19% Similarity=0.046 Sum_probs=87.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
....+.+.......++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.++++++.+++..++. +..++....
T Consensus 22 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~v~-~~~~d~~~~ 98 (256)
T 1nkv_A 22 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVH-FIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEESCCTTC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHhcCCCcceE-EEECChHhC
Confidence 344555555555567889999999999999998876 6799999999 579999999999887752222 223333222
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|++..++++..+...+++.+.+.|+|+
T Consensus 99 ~~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg 133 (256)
T 1nkv_A 99 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG 133 (256)
T ss_dssp CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred CcCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC
Confidence 23568999999999999999999999999999985
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-16 Score=120.32 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=91.5
Q ss_pred EEEeccccCCcceeecchHHHHHHHHHhccCCC-CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRF-SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~-~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~ 114 (169)
+++.|.. .+++....+.+|+.|+. .. ++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.+++|+
T Consensus 22 ~~i~q~~---~~~~~~~d~~ll~~~~~----~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~--~~~~~~a~~n~ 92 (259)
T 3lpm_A 22 LRIIQSP---SVFSFSIDAVLLAKFSY----LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQ--ERLADMAKRSV 92 (259)
T ss_dssp EEEEEBT---TTBCCCHHHHHHHHHCC----CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCS--HHHHHHHHHHH
T ss_pred EEEEeCC---CCccCcHHHHHHHHHhc----CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECC--HHHHHHHHHHH
Confidence 5555554 56677778888888862 23 578999999999999999999876 99999999 57999999999
Q ss_pred HHhCCcc--eEEEEEcCCCCcCCCCCCCcEEEEcCcCCCC--------------------CChHHHHHHHHHhccCC
Q 030935 115 EMNKLNC--RVMGLTWGFLDASIFDLNPNIILGADVFYDA--------------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 115 ~~n~~~~--~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~--------------------~~~~~l~~~l~~~L~p~ 169 (169)
..+++.. ++...++.+........+||+|+++.++|.. ..++.+++.+.+.|+|+
T Consensus 93 ~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 93 AYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp HHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred HHCCCcccEEEEECcHHHhhhhhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 9998863 3333333322222335699999998777655 23567999999999985
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=117.28 Aligned_cols=117 Identities=15% Similarity=0.084 Sum_probs=82.8
Q ss_pred ecchHHHHHHHHHhccC---CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEE
Q 030935 51 VWPCSVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMG 125 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~---~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~ 125 (169)
.+|.+..+.+.+..... ..++.+|||+|||+|.+++.+++.++ +|+++|++ +.+++.+++|++.+++. +++..
T Consensus 22 ~rp~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~v~~~~ 99 (189)
T 3p9n_A 22 TRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESD--QRSAAVIARNIEALGLSGATLRR 99 (189)
T ss_dssp C---CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECC--HHHHHHHHHHHHHHTCSCEEEEE
T ss_pred CccCcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECC--HHHHHHHHHHHHHcCCCceEEEE
Confidence 45555555555543321 25788999999999999998888776 79999999 57999999999998872 33333
Q ss_pred EEcCCCCcCCCCCCCcEEEEcCcCCCC-CChHHHHHHHHH--hccCC
Q 030935 126 LTWGFLDASIFDLNPNIILGADVFYDA-SGKICAFEILIC--SLFPI 169 (169)
Q Consensus 126 l~~~~~~~~~~~~~fDlIi~sd~iy~~-~~~~~l~~~l~~--~L~p~ 169 (169)
.++.+......+.+||+|++..++++. ...+.+++.+.+ .|+|+
T Consensus 100 ~d~~~~~~~~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pg 146 (189)
T 3p9n_A 100 GAVAAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREG 146 (189)
T ss_dssp SCHHHHHHHCCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTT
T ss_pred ccHHHHHhhccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCC
Confidence 322222111225699999997665443 678899999999 99996
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.7e-15 Score=115.44 Aligned_cols=114 Identities=16% Similarity=0.099 Sum_probs=90.7
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
++...+.+.+.+.....++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.+++++..+++..++. +..++.
T Consensus 44 ~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~-~~~~d~ 120 (273)
T 3bus_A 44 DATDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISIS--RPQVNQANARATAAGLANRVT-FSYADA 120 (273)
T ss_dssp HHHHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEECCT
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHHHhcCCCcceE-EEECcc
Confidence 445566677777666667889999999999999999875 6799999999 569999999998887653322 222333
Q ss_pred Cc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. +..+.+||+|++.+++++..+.+.+++.+.+.|+|+
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 159 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPG 159 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE
T ss_pred ccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC
Confidence 22 333468999999999999999999999999999985
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=114.24 Aligned_cols=114 Identities=16% Similarity=0.041 Sum_probs=88.5
Q ss_pred cchHHHHHHHHHhcc-CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 52 WPCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 52 W~~~~~La~~l~~~~-~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
.|.+..+...+.... ...++.+|||+|||+|..++.+++.+. +|+++|++ +.+++.+++++..+++..++. +..+
T Consensus 27 ~~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~-~~~~ 103 (257)
T 3f4k_A 27 GPGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLF--PDFIEIFNENAVKANCADRVK-GITG 103 (257)
T ss_dssp SSCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEEC
T ss_pred CCCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECC--HHHHHHHHHHHHHcCCCCceE-EEEC
Confidence 345555555555544 344677999999999999999999865 99999999 579999999999988764332 2223
Q ss_pred CCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+... +..+.+||+|++..++++. +.+.+++.+.+.|+|+
T Consensus 104 d~~~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pg 143 (257)
T 3f4k_A 104 SMDNLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKG 143 (257)
T ss_dssp CTTSCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEE
T ss_pred ChhhCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCC
Confidence 3322 2345699999999999998 7999999999999985
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=112.32 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=87.2
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
|....+++.+.......++ +|||+|||+|..+..+++. +.+|+++|++ +.+++.+++++..++...++. +..++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s--~~~~~~a~~~~~~~~~~~~~~-~~~~d~ 102 (219)
T 3dlc_A 27 PIYPIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFS--KHMNEIALKNIADANLNDRIQ-IVQGDV 102 (219)
T ss_dssp THHHHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEECBT
T ss_pred cccHHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECC--HHHHHHHHHHHHhccccCceE-EEEcCH
Confidence 3344556666555443334 9999999999999999987 5699999999 579999999999887753332 223333
Q ss_pred Cc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. +..+.+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 103 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pg 141 (219)
T 3dlc_A 103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSG 141 (219)
T ss_dssp TBCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred HHCCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCC
Confidence 22 334568999999999999999999999999999985
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-15 Score=115.70 Aligned_cols=112 Identities=17% Similarity=0.140 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcc----CCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 55 SVILAEYVWQQR----YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 55 ~~~La~~l~~~~----~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
...+.+.+.... ...++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.+++++...++..++. +..+
T Consensus 63 ~~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~-~~~~ 139 (297)
T 2o57_A 63 SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIA--PVQNKRNEEYNNQAGLADNIT-VKYG 139 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHHTCTTTEE-EEEC
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHhcCCCcceE-EEEc
Confidence 344455555544 4557889999999999999999886 8899999999 569999999998887653322 2233
Q ss_pred CCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+... +..+.+||+|++..++++..+...+++.+.+.|+|+
T Consensus 140 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 180 (297)
T 2o57_A 140 SFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR 180 (297)
T ss_dssp CTTSCSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred CcccCCCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCC
Confidence 3322 334568999999999999999999999999999985
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.3e-15 Score=112.19 Aligned_cols=112 Identities=13% Similarity=-0.022 Sum_probs=89.6
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEc
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~ 128 (169)
..||....+.+.+. ..++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++++..++.. +.+...++
T Consensus 5 ~~~~~~~~~~~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~~~d~ 78 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE----CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDAT--KEMVEVASSFAQEKGVENVRFQQGTA 78 (239)
T ss_dssp -CHHHHHHHHHHHT----CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHHTCCSEEEEECBT
T ss_pred ccCCCcchHHHHhC----cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCCeEEEeccc
Confidence 35777766666663 3467899999999999999999998999999999 56999999999888764 34333333
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. .+..+.+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 79 ~~--~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 117 (239)
T 1xxl_A 79 ES--LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD 117 (239)
T ss_dssp TB--CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred cc--CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCC
Confidence 22 1333468999999999999999999999999999985
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.8e-15 Score=114.16 Aligned_cols=112 Identities=15% Similarity=0.023 Sum_probs=87.0
Q ss_pred chHHHHHHHHHhccC-CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEc
Q 030935 53 PCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTW 128 (169)
Q Consensus 53 ~~~~~La~~l~~~~~-~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~ 128 (169)
|........+..... ..++.+|||+|||+|..++.+++.+. +|+++|++ +.+++.++++++.+++. +++...++
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~ 105 (267)
T 3kkz_A 28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFL--SGFIDIFNRNARQSGLQNRVTGIVGSM 105 (267)
T ss_dssp SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCC--HHHHHHHHHHHHHcCCCcCcEEEEcCh
Confidence 444444555554433 45678999999999999999999865 99999999 57999999999988875 34333333
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+. +..+.+||+|++..++++. +.+.+++.+.+.|+|+
T Consensus 106 ~~~--~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~Lkpg 143 (267)
T 3kkz_A 106 DDL--PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKG 143 (267)
T ss_dssp TSC--CCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEE
T ss_pred hhC--CCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCC
Confidence 221 2335689999999999999 8999999999999985
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=120.02 Aligned_cols=115 Identities=22% Similarity=0.267 Sum_probs=92.2
Q ss_pred eecchHHHHHHHHHhcc--CCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 50 FVWPCSVILAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~--~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
...+.+..+.+.+.... ...++.+|||+|||+|.+++.+++.+++|+++|++ +.+++.+++|+..+++.+++.
T Consensus 211 ~~d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis--~~al~~A~~n~~~~~~~v~~~--- 285 (381)
T 3dmg_A 211 KVDPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDD--LASVLSLQKGLEANALKAQAL--- 285 (381)
T ss_dssp SCCHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESB--HHHHHHHHHHHHHTTCCCEEE---
T ss_pred CCCHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCCeEEE---
Confidence 35577888888886643 23467899999999999999999999999999999 579999999999998876544
Q ss_pred cCCCCcCCC-CCCCcEEEEcCcCCC-----CCChHHHHHHHHHhccCC
Q 030935 128 WGFLDASIF-DLNPNIILGADVFYD-----ASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~~-~~~fDlIi~sd~iy~-----~~~~~~l~~~l~~~L~p~ 169 (169)
+++...... ..+||+|+++.++++ ......+++.+.+.|+|+
T Consensus 286 ~~D~~~~~~~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpG 333 (381)
T 3dmg_A 286 HSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPG 333 (381)
T ss_dssp ECSTTTTSCTTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEE
T ss_pred EcchhhccccCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcC
Confidence 444433333 369999999888886 455678999999999985
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-15 Score=116.69 Aligned_cols=115 Identities=11% Similarity=0.035 Sum_probs=91.7
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
..++.+..+++.+.+.....++.+|||+|||+|..+..+++. +++|+++|++ +.+++.++++.... ..+.+...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~-~~~~~~~~d~ 111 (266)
T 3ujc_A 35 YISSGGLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDIC--SNIVNMANERVSGN-NKIIFEANDI 111 (266)
T ss_dssp CCSTTHHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHTCCSC-TTEEEEECCT
T ss_pred ccccchHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHhhcC-CCeEEEECcc
Confidence 456777777888887766667889999999999999999986 8899999999 56999998877654 3333333333
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.+. +..+.+||+|++..++++. .+...+++.+.+.|+|+
T Consensus 112 ~~~--~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg 152 (266)
T 3ujc_A 112 LTK--EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT 152 (266)
T ss_dssp TTC--CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ccC--CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC
Confidence 221 3345699999999999999 89999999999999985
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.4e-15 Score=113.78 Aligned_cols=96 Identities=15% Similarity=0.000 Sum_probs=80.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc-CCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA-SIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~-~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|.++..+++.+.+|+++|++ +.+++.+++++..++.. +.+. .++... +..+.+||+|+++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~v~~~---~~d~~~l~~~~~~fD~V~~~ 110 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLT--EDILKVARAFIEGNGHQQVEYV---QGDAEQMPFTDERFHIVTCR 110 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEE---ECCC-CCCSCTTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHhcCCCceEEE---EecHHhCCCCCCCEEEEEEh
Confidence 467899999999999999999998899999999 57999999999887754 3333 333322 3344699999999
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++++..+.+.+++.+.+.|+|+
T Consensus 111 ~~l~~~~d~~~~l~~~~r~Lkpg 133 (260)
T 1vl5_A 111 IAAHHFPNPASFVSEAYRVLKKG 133 (260)
T ss_dssp SCGGGCSCHHHHHHHHHHHEEEE
T ss_pred hhhHhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999985
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-15 Score=111.59 Aligned_cols=114 Identities=16% Similarity=0.018 Sum_probs=85.5
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcc----eEEEE
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC----RVMGL 126 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~----~~~~l 126 (169)
+......+++.+.....++.+|||+|||+|..+..+++.+ .+|+++|++ +.+++.+++++..+++.. ++. +
T Consensus 12 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~~~v~-~ 88 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVS--YSVLERAKDRLKIDRLPEMQRKRIS-L 88 (219)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESC--HHHHHHHHHHHTGGGSCHHHHTTEE-E
T ss_pred cchHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHHHhhccccccCcceE-E
Confidence 4444555555554434467899999999999999999876 599999999 579999999988776531 222 3
Q ss_pred EcCCCCc-CCCCCCCcEEEEcCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 127 TWGFLDA-SIFDLNPNIILGADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
..++... .....+||+|++++++++.... ..+++.+.+.|+|+
T Consensus 89 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (219)
T 3jwg_A 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQ 134 (219)
T ss_dssp EECCSSSCCGGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred EeCcccccccccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCC
Confidence 3333322 2234589999999999999744 79999999999996
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.9e-15 Score=111.07 Aligned_cols=111 Identities=16% Similarity=-0.005 Sum_probs=83.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcc----eEEEEEcC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC----RVMGLTWG 129 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~----~~~~l~~~ 129 (169)
....+++.......++.+|||+|||+|.++..+++.+ .+|+++|++ +.+++.+++++..+++.. ++. +..+
T Consensus 15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~~~v~-~~~~ 91 (217)
T 3jwh_A 15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVS--YRSLEIAQERLDRLRLPRNQWERLQ-LIQG 91 (217)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESC--HHHHHHHHHHHTTCCCCHHHHTTEE-EEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECC--HHHHHHHHHHHHHhcCCcccCcceE-EEeC
Confidence 3344455444334467899999999999999999876 499999999 579999999998776642 222 3333
Q ss_pred CCCc-CCCCCCCcEEEEcCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 130 FLDA-SIFDLNPNIILGADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~-~~~~~~fDlIi~sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+... .....+||+|+++.++++.... ..+++.+.+.|+|+
T Consensus 92 d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 134 (217)
T 3jwh_A 92 ALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPK 134 (217)
T ss_dssp CTTSCCGGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCS
T ss_pred CcccccccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence 4322 2223589999999999988744 89999999999996
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=108.89 Aligned_cols=97 Identities=20% Similarity=0.186 Sum_probs=79.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++++..++. .+++...+.... + .+.+||+|+++
T Consensus 30 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~-~~~~~D~v~~~ 104 (199)
T 2xvm_A 30 VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKN--AMSIANVERIKSIENLDNLHTRVVDLNNL--T-FDRQYDFILST 104 (199)
T ss_dssp TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCTTEEEEECCGGGC--C-CCCCEEEEEEE
T ss_pred ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHhCCCCCcEEEEcchhhC--C-CCCCceEEEEc
Confidence 3467799999999999999999999999999999 5699999999988876 344433333321 2 25689999999
Q ss_pred CcCCCCC--ChHHHHHHHHHhccCC
Q 030935 147 DVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.++++.. ....+++.+.+.|+|+
T Consensus 105 ~~l~~~~~~~~~~~l~~~~~~L~~g 129 (199)
T 2xvm_A 105 VVLMFLEAKTIPGLIANMQRCTKPG 129 (199)
T ss_dssp SCGGGSCGGGHHHHHHHHHHTEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999876 7899999999999985
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-15 Score=113.40 Aligned_cols=113 Identities=12% Similarity=-0.078 Sum_probs=86.9
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.|-....+..++.......++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++++..++ .+.+.. ++
T Consensus 32 ~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~-~~~~~~---~d 105 (216)
T 3ofk_A 32 NPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVM--PRAIGRACQRTKRWS-HISWAA---TD 105 (216)
T ss_dssp CHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESC--HHHHHHHHHHTTTCS-SEEEEE---CC
T ss_pred CHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHhcccCC-CeEEEE---cc
Confidence 344445666666655555567899999999999999999998899999999 569999999887543 344333 33
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCCh---HHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASGK---ICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~~---~~l~~~l~~~L~p~ 169 (169)
......+.+||+|+++.++++..+. ..+++.+.+.|+|+
T Consensus 106 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 147 (216)
T 3ofk_A 106 ILQFSTAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPG 147 (216)
T ss_dssp TTTCCCSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEE
T ss_pred hhhCCCCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCC
Confidence 3332245699999999999998887 46699999999985
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-14 Score=115.08 Aligned_cols=106 Identities=12% Similarity=-0.072 Sum_probs=84.5
Q ss_pred HHHHhccC-CCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCC
Q 030935 60 EYVWQQRY-RFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIF 136 (169)
Q Consensus 60 ~~l~~~~~-~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~ 136 (169)
+++..... ..++.+|||+|||+|.+++.+++. +++|+++|++ +.+++.+++|++.+++..++. +..++... +..
T Consensus 106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~ 182 (312)
T 3vc1_A 106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLS--AAQADFGNRRARELRIDDHVR-SRVCNMLDTPFD 182 (312)
T ss_dssp HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEECCTTSCCCC
T ss_pred HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHHcCCCCceE-EEECChhcCCCC
Confidence 34544444 556789999999999999999987 8899999999 579999999999988763332 33334332 234
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++.+++++. +...+++.+.+.|+|+
T Consensus 183 ~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lkpg 214 (312)
T 3vc1_A 183 KGAVTASWNNESTMYV-DLHDLFSEHSRFLKVG 214 (312)
T ss_dssp TTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEE
T ss_pred CCCEeEEEECCchhhC-CHHHHHHHHHHHcCCC
Confidence 4699999999999998 4999999999999985
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.5e-14 Score=113.31 Aligned_cols=107 Identities=11% Similarity=-0.048 Sum_probs=85.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
..+.+.......++.+|||+|||+|.+++.+++. |++|+++|++ +.+++.+++++..+++..++. +..++....
T Consensus 60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~-- 134 (302)
T 3hem_A 60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKE-VRIQGWEEF-- 134 (302)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECC--HHHHHHHHHHHHHSCCSSCEE-EEECCGGGC--
T ss_pred HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEECCHHHc--
Confidence 4445555555567889999999999999999987 8899999999 579999999999888763332 233333222
Q ss_pred CCCCcEEEEcCcCCCCCC---------hHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASG---------KICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~---------~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++..++++..+ .+.+++.+.+.|+|+
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg 176 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD 176 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC
Confidence 679999999999998844 489999999999996
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=113.80 Aligned_cols=97 Identities=16% Similarity=0.186 Sum_probs=79.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++++..+++..++. +..++.... ..+.+||+|++..
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~fD~v~~~~ 144 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLS--AQMIDRAKQAAEAKGVSDNMQ-FIHCAAQDVASHLETPVDLILFHA 144 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHC-CCGGGEE-EEESCGGGTGGGCSSCEEEEEEES
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCcceE-EEEcCHHHhhhhcCCCceEEEECc
Confidence 46799999999999999999999999999999 579999999998887753332 223333222 2456999999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+...+++.+.+.|+|+
T Consensus 145 ~l~~~~~~~~~l~~~~~~Lkpg 166 (285)
T 4htf_A 145 VLEWVADPRSVLQTLWSVLRPG 166 (285)
T ss_dssp CGGGCSCHHHHHHHHHHTEEEE
T ss_pred hhhcccCHHHHHHHHHHHcCCC
Confidence 9999999999999999999985
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=109.46 Aligned_cols=98 Identities=27% Similarity=0.348 Sum_probs=76.0
Q ss_pred CCCCeEEEECCC-CCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAG-TSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcG-tGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+||| +|.+++.+++. +.+|+++|++ +.+++.+++|++.++.++++...++... ....+.+||+|+++
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~v~~~~~d~~~~-~~~~~~~fD~I~~n 130 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVD--EEFFEYARRNIERNNSNVRLVKSNGGII-KGVVEGTFDVIFSA 130 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECC--HHHHHHHHHHHHHTTCCCEEEECSSCSS-TTTCCSCEEEEEEC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHHhCCCcEEEeCCchhh-hhcccCceeEEEEC
Confidence 367899999999 99999999998 7899999999 5799999999999988665554443222 23334699999987
Q ss_pred CcCCCCCC-------------------hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG-------------------KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~-------------------~~~l~~~l~~~L~p~ 169 (169)
.+++.... +..+++.+.+.|+|+
T Consensus 131 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 131 PPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp CCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred CCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 66554332 478899999999985
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.3e-14 Score=110.95 Aligned_cols=111 Identities=12% Similarity=0.017 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHH-HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a-~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
+...+.+.+.......++.+|||+|||+|..+..++ +.|.+|+++|++ +.+++.+++++...++...+. +..++..
T Consensus 48 a~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s--~~~~~~a~~~~~~~~~~~~~~-~~~~d~~ 124 (287)
T 1kpg_A 48 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLS--KNQANHVQQLVANSENLRSKR-VLLAGWE 124 (287)
T ss_dssp HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTCCCCSCEE-EEESCGG
T ss_pred HHHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCCCCeE-EEECChh
Confidence 344456666666666678899999999999999888 568899999999 569999999998776643332 2233332
Q ss_pred cCCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 133 ASIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
. . +.+||+|++..++++. .+...+++.+.+.|+|+
T Consensus 125 ~-~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 161 (287)
T 1kpg_A 125 Q-F-DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD 161 (287)
T ss_dssp G-C-CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred h-C-CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC
Confidence 2 2 2689999999999988 78899999999999996
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=109.34 Aligned_cols=109 Identities=16% Similarity=0.104 Sum_probs=85.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
...+.+.+.+... ++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.+.++..+++...+..+. +
T Consensus 25 ~~~~~~~l~~~~~--~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~ 98 (227)
T 1ve3_A 25 IETLEPLLMKYMK--KRGKVLDLACGVGGFSFLLEDYGFEVVGVDIS--EDMIRKAREYAKSRESNVEFIVGDARKL--S 98 (227)
T ss_dssp HHHHHHHHHHSCC--SCCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCCEEEECCTTSC--C
T ss_pred HHHHHHHHHHhcC--CCCeEEEEeccCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCCceEEECchhcC--C
Confidence 4455556655543 37799999999999999999998899999999 5799999999988775555444433321 2
Q ss_pred CCCCCCcEEEEcCc--CCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADV--FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~--iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|+++++ +++..+...+++.+.+.|+|+
T Consensus 99 ~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~g 135 (227)
T 1ve3_A 99 FEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS 135 (227)
T ss_dssp SCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred CCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCC
Confidence 33458999999999 666677889999999999985
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.7e-15 Score=115.26 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=79.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++.+|||+|||+|..++.+++.|.+|+++|++ +.+++.+++++..++..+++... +......+.+||+|+++.++
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~fD~i~~~~~~ 194 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHN--ENSIAFLNETKEKENLNISTALY---DINAANIQENYDFIVSTVVF 194 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEEC---CGGGCCCCSCEEEEEECSSG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHHcCCceEEEEe---ccccccccCCccEEEEccch
Confidence 67899999999999999999999999999999 56999999999998875554433 33332236699999999999
Q ss_pred CCC--CChHHHHHHHHHhccCC
Q 030935 150 YDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~--~~~~~l~~~l~~~L~p~ 169 (169)
++. .....+++.+.+.|+|+
T Consensus 195 ~~~~~~~~~~~l~~~~~~Lkpg 216 (286)
T 3m70_A 195 MFLNRERVPSIIKNMKEHTNVG 216 (286)
T ss_dssp GGSCGGGHHHHHHHHHHTEEEE
T ss_pred hhCCHHHHHHHHHHHHHhcCCC
Confidence 976 45679999999999985
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=111.50 Aligned_cols=110 Identities=22% Similarity=0.177 Sum_probs=88.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~ 131 (169)
...+.+++.......++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.+++++..++.. +.+. .++.
T Consensus 22 ~~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~---~~d~ 96 (276)
T 3mgg_A 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDIS--PESLEKARENTEKNGIKNVKFL---QANI 96 (276)
T ss_dssp -CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEE---ECCG
T ss_pred HHHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEEE---Eccc
Confidence 4456667766655567889999999999999999988 5699999999 56999999999888764 3333 2333
Q ss_pred Cc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. +..+.+||+|+++.++++..+.+.+++.+.+.|+|+
T Consensus 97 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 135 (276)
T 3mgg_A 97 FSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPG 135 (276)
T ss_dssp GGCCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred ccCCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCC
Confidence 22 334569999999999999999999999999999985
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-15 Score=113.37 Aligned_cols=96 Identities=13% Similarity=0.009 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc---CCCCCC-CcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA---SIFDLN-PNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~---~~~~~~-fDlI 143 (169)
++.+|||+|||+|.+++.+++.++ +|+++|++ +.+++.+++|++.+++. .++. +..++... ...+.+ ||+|
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~fD~I 129 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELD--KTVANQLKKNLQTLKCSSEQAE-VINQSSLDFLKQPQNQPHFDVV 129 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCTTTEE-EECSCHHHHTTSCCSSCCEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECC--HHHHHHHHHHHHHhCCCccceE-EEECCHHHHHHhhccCCCCCEE
Confidence 578999999999999998887775 89999999 57999999999998872 1222 33344322 112457 9999
Q ss_pred EEcCcCCCCCChHHHHHHH--HHhccCC
Q 030935 144 LGADVFYDASGKICAFEIL--ICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l--~~~L~p~ 169 (169)
++..+ |.....+.+++.+ .+.|+|+
T Consensus 130 ~~~~~-~~~~~~~~~l~~~~~~~~Lkpg 156 (201)
T 2ift_A 130 FLDPP-FHFNLAEQAISLLCENNWLKPN 156 (201)
T ss_dssp EECCC-SSSCHHHHHHHHHHHTTCEEEE
T ss_pred EECCC-CCCccHHHHHHHHHhcCccCCC
Confidence 98766 6677888899988 4568875
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=109.38 Aligned_cols=98 Identities=18% Similarity=0.118 Sum_probs=80.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
..++.+|||+|||+|..+..+++.+ .+|+++|++ +.+++.+++++..+++. +.+...+..+. ...+.+||+|
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v 110 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQ--EEMVNYAWEKVNKLGLKNVEVLKSEENKI--PLPDNTVDFI 110 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESC--HHHHHHHHHHHHHHTCTTEEEEECBTTBC--SSCSSCEEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHHHHcCCCcEEEEecccccC--CCCCCCeeEE
Confidence 4467899999999999999999876 599999999 56999999999888765 44333333221 2344589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++.++++..+...+++.+.+.|+|+
T Consensus 111 ~~~~~l~~~~~~~~~l~~~~~~Lkpg 136 (219)
T 3dh0_A 111 FMAFTFHELSEPLKFLEELKRVAKPF 136 (219)
T ss_dssp EEESCGGGCSSHHHHHHHHHHHEEEE
T ss_pred EeehhhhhcCCHHHHHHHHHHHhCCC
Confidence 99999999999999999999999985
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=105.48 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=80.9
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc---ceEEEEEcCCCCcCCC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDASIF 136 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~---~~~~~l~~~~~~~~~~ 136 (169)
+.+.+.....++.+|||+|||+|..++.+++.+.+|+++|++ +.+++.+++++..++.. +++. .++......
T Consensus 42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~~~~---~~d~~~~~~ 116 (194)
T 1dus_A 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADIN--RRAIKLAKENIKLNNLDNYDIRVV---HSDLYENVK 116 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHTTCTTSCEEEE---ECSTTTTCT
T ss_pred HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECC--HHHHHHHHHHHHHcCCCccceEEE---ECchhcccc
Confidence 334333334477899999999999999999988899999999 57999999999988775 3433 334333334
Q ss_pred CCCCcEEEEcCcCCC-CCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYD-ASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~-~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++.++++ ......+++.+.+.|+|+
T Consensus 117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~g 150 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN 150 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE
T ss_pred cCCceEEEECCCcccchhHHHHHHHHHHHHcCCC
Confidence 568999999877665 356788999999999985
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.8e-14 Score=103.29 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=79.7
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
.+...+.......++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|+..++...++ .+. ++....
T Consensus 12 ~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~-~~~-~d~~~~ 87 (178)
T 3hm2_A 12 HVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEIS--EERRERILSNAINLGVSDRI-AVQ-QGAPRA 87 (178)
T ss_dssp HHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSC--HHHHHHHHHHHHTTTCTTSE-EEE-CCTTGG
T ss_pred HHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCC--HHHHHHHHHHHHHhCCCCCE-EEe-cchHhh
Confidence 33444444444557789999999999999999887 5699999999 56999999999988876334 233 333233
Q ss_pred CCC--CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFD--LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~--~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
... .+||+|+++.++++ ..+++.+.+.|+|+
T Consensus 88 ~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~g 120 (178)
T 3hm2_A 88 FDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVG 120 (178)
T ss_dssp GGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTT
T ss_pred hhccCCCCCEEEECCcccH----HHHHHHHHHhcCCC
Confidence 333 68999999999887 78999999999986
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-14 Score=110.41 Aligned_cols=102 Identities=17% Similarity=0.056 Sum_probs=81.1
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNP 140 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~f 140 (169)
+.......++.+|||+|||+|..+..+++.+. +|+++|++ +.+++.++++.. ...+.+...+..+. +..+.+|
T Consensus 36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~~~~f 109 (253)
T 3g5l_A 36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLS--ERMLTEAKRKTT--SPVVCYEQKAIEDI--AIEPDAY 109 (253)
T ss_dssp HHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHCC--CTTEEEEECCGGGC--CCCTTCE
T ss_pred HHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECC--HHHHHHHHHhhc--cCCeEEEEcchhhC--CCCCCCe
Confidence 44444555788999999999999999999988 99999999 569999988776 22333333333221 2335699
Q ss_pred cEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 141 NIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+|+++.++++..+...+++.+.+.|+|+
T Consensus 110 D~v~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (253)
T 3g5l_A 110 NVVLSSLALHYIASFDDICKKVYINLKSS 138 (253)
T ss_dssp EEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred EEEEEchhhhhhhhHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999985
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=114.43 Aligned_cols=102 Identities=15% Similarity=0.035 Sum_probs=79.0
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIF 136 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~ 136 (169)
+.+.......++.+|||||||+|.+++.+++.|++|+++|++ +.|++.+++|+..+. ...+|.+... ...
T Consensus 35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S--~~ml~~Ar~~~~~~~-----v~~~~~~~~~~~~~~~ 107 (261)
T 3iv6_A 35 ENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFS--QRMCDDLAEALADRC-----VTIDLLDITAEIPKEL 107 (261)
T ss_dssp HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHTSSSC-----CEEEECCTTSCCCGGG
T ss_pred HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHhcc-----ceeeeeeccccccccc
Confidence 445555555678899999999999999999999999999999 579999999887552 2244544322 112
Q ss_pred CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++.++++. .....+++.+.++| ||
T Consensus 108 ~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG 141 (261)
T 3iv6_A 108 AGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS 141 (261)
T ss_dssp TTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT
T ss_pred CCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC
Confidence 4589999999998754 45677899999998 86
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=111.53 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=77.2
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
.+|.+|||||||+|..++.+++. |++|+++|++ +.|++.|+++++..+...++. +..++... ....+||+|+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s--~~ml~~A~~~~~~~~~~~~v~-~~~~D~~~-~~~~~~d~v~ 144 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS--PAMIERCRRHIDAYKAPTPVD-VIEGDIRD-IAIENASMVV 144 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESC--HHHHHHHHHHHHTSCCSSCEE-EEESCTTT-CCCCSEEEEE
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECC--HHHHHHHHHHHHhhccCceEE-Eeeccccc-ccccccccce
Confidence 36789999999999999999875 4589999999 679999999998777654433 34455433 2334799999
Q ss_pred EcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 145 GADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
++.++++... ...+++.+.+.|+||
T Consensus 145 ~~~~l~~~~~~~~~~~l~~i~~~LkpG 171 (261)
T 4gek_A 145 LNFTLQFLEPSERQALLDKIYQGLNPG 171 (261)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred eeeeeeecCchhHhHHHHHHHHHcCCC
Confidence 9999988754 457899999999996
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.5e-14 Score=114.39 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=83.3
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI 135 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~ 135 (169)
..+.+.+.....++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.++++++.+++..++. +..++... ..
T Consensus 52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~---~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~ 127 (340)
T 2fyt_A 52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE---ILYQAMDIIRLNKLEDTIT-LIKGKIEEVHL 127 (340)
T ss_dssp HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST---HHHHHHHHHHHTTCTTTEE-EEESCTTTSCC
T ss_pred HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH---HHHHHHHHHHHcCCCCcEE-EEEeeHHHhcC
Confidence 345566665567889999999999999999999987 899999993 8999999999988743333 23344332 23
Q ss_pred CCCCCcEEEEcCc---CCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADV---FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~---iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+||+|++..+ +.+...++.+++.+.+.|+|+
T Consensus 128 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 164 (340)
T 2fyt_A 128 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 164 (340)
T ss_dssp SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCC
Confidence 3468999999874 456677888999999999985
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=109.69 Aligned_cols=109 Identities=11% Similarity=-0.084 Sum_probs=83.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
..+.+++... ..++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++++...+...++. +..++.....
T Consensus 54 ~~l~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~ 128 (235)
T 3lcc_A 54 PLIVHLVDTS--SLPLGRALVPGCGGGHDVVAMASPERFVVGLDIS--ESALAKANETYGSSPKAEYFS-FVKEDVFTWR 128 (235)
T ss_dssp HHHHHHHHTT--CSCCEEEEEETCTTCHHHHHHCBTTEEEEEECSC--HHHHHHHHHHHTTSGGGGGEE-EECCCTTTCC
T ss_pred HHHHHHHHhc--CCCCCCEEEeCCCCCHHHHHHHhCCCeEEEEECC--HHHHHHHHHHhhccCCCcceE-EEECchhcCC
Confidence 3455555433 2244599999999999999999988899999999 569999999987644322222 3344444333
Q ss_pred CCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
...+||+|+++.++++.. ....+++.+.+.|+|+
T Consensus 129 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 164 (235)
T 3lcc_A 129 PTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPD 164 (235)
T ss_dssp CSSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEE
T ss_pred CCCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCC
Confidence 445899999999999887 8899999999999985
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-14 Score=116.36 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=86.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.....+++.+.....++++|||||||+|.+++.+++.|+ +|+++|.+ . |++.++++++.+++..++. +..++...
T Consensus 48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~--~~~~a~~~~~~~~~~~~v~-~~~~d~~~ 123 (376)
T 3r0q_C 48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-K--MADHARALVKANNLDHIVE-VIEGSVED 123 (376)
T ss_dssp HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-T--THHHHHHHHHHTTCTTTEE-EEESCGGG
T ss_pred HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-H--HHHHHHHHHHHcCCCCeEE-EEECchhh
Confidence 344556676666677899999999999999999999988 99999999 5 9999999999998864332 33344333
Q ss_pred CCCCCCCcEEEEcCcCCCC---CChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
...+.+||+|++.-+.|.. ..++.+++.+.+.|+|+
T Consensus 124 ~~~~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkpg 162 (376)
T 3r0q_C 124 ISLPEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPT 162 (376)
T ss_dssp CCCSSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEE
T ss_pred cCcCCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCC
Confidence 2233799999996555543 67888999999999985
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-13 Score=102.39 Aligned_cols=102 Identities=11% Similarity=-0.015 Sum_probs=79.1
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-C
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-D 137 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~ 137 (169)
.+.......++.+|||+|||+|.+++.+++.+ .+|+++|++ +.+++.+++|++.++.. ++. +..++...... .
T Consensus 31 ~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~-~v~-~~~~d~~~~~~~~ 106 (204)
T 3e05_A 31 VTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERN--PQYLGFIRDNLKKFVAR-NVT-LVEAFAPEGLDDL 106 (204)
T ss_dssp HHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECC--HHHHHHHHHHHHHHTCT-TEE-EEECCTTTTCTTS
T ss_pred HHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHhCCC-cEE-EEeCChhhhhhcC
Confidence 34444445578899999999999999999987 699999999 57999999999988873 222 33344322222 2
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|++..+.+ ..+.+++.+.+.|+|+
T Consensus 107 ~~~D~i~~~~~~~---~~~~~l~~~~~~Lkpg 135 (204)
T 3e05_A 107 PDPDRVFIGGSGG---MLEEIIDAVDRRLKSE 135 (204)
T ss_dssp CCCSEEEESCCTT---CHHHHHHHHHHHCCTT
T ss_pred CCCCEEEECCCCc---CHHHHHHHHHHhcCCC
Confidence 5899999988775 7889999999999996
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=2e-14 Score=118.11 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=82.4
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc--eEEEEEcCCCCcC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC--RVMGLTWGFLDAS 134 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~--~~~~l~~~~~~~~ 134 (169)
++++.+......+.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|++.|++.. ++ .+.+++....
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s--~~al~~Ar~n~~~ngl~~~~~v-~~~~~D~~~~ 287 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDES--PMAVASSRLNVETNMPEALDRC-EFMINNALSG 287 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHCGGGGGGE-EEEECSTTTT
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECc--HHHHHHHHHHHHHcCCCcCceE-EEEechhhcc
Confidence 444555544556689999999999999999998 4699999999 579999999999998652 23 3556666555
Q ss_pred CCCCCCcEEEEcCcCCCC-----CChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDA-----SGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~-----~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|+++.+++.. .....+++.+.+.|+|+
T Consensus 288 ~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 288 VEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKIN 327 (375)
T ss_dssp CCTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEE
T ss_pred CCCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCC
Confidence 555699999999888743 22346899999999985
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.55 E-value=8.3e-15 Score=107.65 Aligned_cols=115 Identities=14% Similarity=0.127 Sum_probs=84.3
Q ss_pred ecchHHHHHHHHHhcc-CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 51 VWPCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~-~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
.-|....+.+.+.... ...++.+|||+|||+|..++.+++.++ +|+++|++ +.+++.+++|+..+++..++. +..
T Consensus 24 ~rp~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~-~~~ 100 (187)
T 2fhp_A 24 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKN--FAALKVIKENIAITKEPEKFE-VRK 100 (187)
T ss_dssp SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHTCGGGEE-EEE
T ss_pred cCcCHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHhCCCcceE-EEE
Confidence 3455666666665543 235788999999999999998888775 89999999 579999999999988743322 223
Q ss_pred CCCCcCC-----CCCCCcEEEEcCcCCCCCChHHHHHHH--HHhccCC
Q 030935 129 GFLDASI-----FDLNPNIILGADVFYDASGKICAFEIL--ICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~-----~~~~fDlIi~sd~iy~~~~~~~l~~~l--~~~L~p~ 169 (169)
++..... ...+||+|++..+ |.....+.+++.+ .+.|+|+
T Consensus 101 ~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~g 147 (187)
T 2fhp_A 101 MDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNE 147 (187)
T ss_dssp SCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEE
T ss_pred CcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCC
Confidence 3332211 1458999998666 6677788888888 7778874
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=8.2e-14 Score=111.03 Aligned_cols=109 Identities=11% Similarity=-0.057 Sum_probs=86.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
....+.+.......++.+|||+|||+|.++..+++. |++|+++|++ +.+++.+++++..+++...+. +..++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~ 152 (318)
T 2fk8_A 76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQ-VLLQGWEDF 152 (318)
T ss_dssp HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEE-EEESCGGGC
T ss_pred HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEECChHHC
Confidence 445556666665667889999999999999999887 8899999999 579999999998877653332 233333221
Q ss_pred CCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++..++++. .+...+++.+.+.|+|+
T Consensus 153 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 187 (318)
T 2fk8_A 153 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 187 (318)
T ss_dssp --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred --CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC
Confidence 3689999999999988 68899999999999996
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=4.3e-14 Score=111.25 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=81.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
...++.+|||+|||+|..++.+++. +++|+++|++ +.+++.+++++...+.++++.. ++......+.+||+|
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~v~~~~---~d~~~~~~~~~fD~v 93 (284)
T 3gu3_A 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG--ETLLAEARELFRLLPYDSEFLE---GDATEIELNDKYDIA 93 (284)
T ss_dssp CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESC--HHHHHHHHHHHHSSSSEEEEEE---SCTTTCCCSSCEEEE
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHhcCCceEEEE---cchhhcCcCCCeeEE
Confidence 4457789999999999999999986 5799999999 5799999999887766554443 333332234689999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++..++++..+.+.+++.+.+.|+|+
T Consensus 94 ~~~~~l~~~~~~~~~l~~~~~~Lkpg 119 (284)
T 3gu3_A 94 ICHAFLLHMTTPETMLQKMIHSVKKG 119 (284)
T ss_dssp EEESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred EECChhhcCCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999985
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=109.12 Aligned_cols=96 Identities=17% Similarity=0.112 Sum_probs=76.7
Q ss_pred CCCeEEEECCCCCHHH-HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPG-LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~-l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|..+ ..+++.+.+|+++|++ +.+++.+++++..++..+.+...+..+. +..+.+||+|++..+
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEIS--DLQLKKAENFSRENNFKLNISKGDIRKL--PFKDESMSFVYSYGT 98 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECC--HHHHHHHHHHHHHHTCCCCEEECCTTSC--CSCTTCEEEEEECSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECC--HHHHHHHHHHHHhcCCceEEEECchhhC--CCCCCceeEEEEcCh
Confidence 5789999999999874 4556678899999999 5699999999987776655554443332 233468999999999
Q ss_pred CCCC--CChHHHHHHHHHhccCC
Q 030935 149 FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. .+...+++.+.+.|+|+
T Consensus 99 l~~~~~~~~~~~l~~~~~~Lkpg 121 (209)
T 2p8j_A 99 IFHMRKNDVKEAIDEIKRVLKPG 121 (209)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHcCCC
Confidence 9988 67889999999999985
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=110.48 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=79.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc---eEEEEEcCCCCc-CCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC---RVMGLTWGFLDA-SIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~---~~~~l~~~~~~~-~~~~~~fDlIi~ 145 (169)
++.+|||+|||+|..+..+++.+++|+++|++ +.+++.+++++..++... ....+..++... +..+.+||+|++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~ 107 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDIN--SEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM 107 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECC--HHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence 67899999999999999999999999999999 569999999988776521 112233444332 233568999999
Q ss_pred cCcCCCCCChH---HHHHHHHHhccCC
Q 030935 146 ADVFYDASGKI---CAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~---~l~~~l~~~L~p~ 169 (169)
+.++++..+.+ .+++.+.+.|+|+
T Consensus 108 ~~~l~~~~~~~~~~~~l~~~~~~L~pg 134 (235)
T 3sm3_A 108 QAFLTSVPDPKERSRIIKEVFRVLKPG 134 (235)
T ss_dssp ESCGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred cchhhcCCCHHHHHHHHHHHHHHcCCC
Confidence 99999998887 8999999999985
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=102.90 Aligned_cols=101 Identities=13% Similarity=0.098 Sum_probs=76.9
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLN 139 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~ 139 (169)
.+.......++.+|||+|||+|.+++.+++.+.+|+++|++ +++++.+++|++.+++..++. +..++...... ..+
T Consensus 46 ~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s--~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~~~~~~~ 122 (204)
T 3njr_A 46 LTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPR--ADRIENIQKNIDTYGLSPRMR-AVQGTAPAALADLPL 122 (204)
T ss_dssp HHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEESCTTGGGTTSCC
T ss_pred HHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCC--HHHHHHHHHHHHHcCCCCCEE-EEeCchhhhcccCCC
Confidence 34444445578899999999999999999998899999999 579999999999988762222 33344433222 248
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++...+ ..+ +++.+.+.|+|+
T Consensus 123 ~D~v~~~~~~----~~~-~l~~~~~~Lkpg 147 (204)
T 3njr_A 123 PEAVFIGGGG----SQA-LYDRLWEWLAPG 147 (204)
T ss_dssp CSEEEECSCC----CHH-HHHHHHHHSCTT
T ss_pred CCEEEECCcc----cHH-HHHHHHHhcCCC
Confidence 9999987644 456 999999999996
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-15 Score=108.23 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=81.7
Q ss_pred ecchHHHHHHHHHhccCC-C-CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 51 VWPCSVILAEYVWQQRYR-F-SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~-~-~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
..|....+.+.+...... . ++++|||+|||+|..++.+++.+.+|+++|++ +.+++.+++|+..+++++++...++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~d~ 97 (171)
T 1ws6_A 20 ARPSPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKD--PEAVRLLKENVRRTGLGARVVALPV 97 (171)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCC--HHHHHHHHHHHHHHTCCCEEECSCH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHHHHcCCceEEEeccH
Confidence 444555555554443221 2 67899999999999999999999899999999 5799999999998887444333222
Q ss_pred CCCCcCC--CCCCCcEEEEcCcCCCCCChHHHHHHHH--HhccCC
Q 030935 129 GFLDASI--FDLNPNIILGADVFYDASGKICAFEILI--CSLFPI 169 (169)
Q Consensus 129 ~~~~~~~--~~~~fDlIi~sd~iy~~~~~~~l~~~l~--~~L~p~ 169 (169)
.+..... ...+||+|++..+++ ...+.+++.+. +.|+|+
T Consensus 98 ~~~~~~~~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~g 140 (171)
T 1ws6_A 98 EVFLPEAKAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAG 140 (171)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEE
T ss_pred HHHHHhhhccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCC
Confidence 2211011 123799999976644 77788888888 888874
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=103.66 Aligned_cols=109 Identities=9% Similarity=-0.067 Sum_probs=76.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-- 133 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-- 133 (169)
..+++.+.... ..++.+|||+|||+|..++.+++.+.+|+++|++ +.+++.+++|++.+++. ++.... ++...
T Consensus 9 ~~~~~~~l~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~-~v~~~~-~~~~~l~ 83 (185)
T 3mti_A 9 IHMSHDFLAEV-LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQ--EQALGKTSQRLSDLGIE-NTELIL-DGHENLD 83 (185)
T ss_dssp HHHHHHHHHTT-CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHHTCC-CEEEEE-SCGGGGG
T ss_pred HHHHHHHHHHh-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCC-cEEEEe-CcHHHHH
Confidence 34444444332 3367899999999999999999998899999999 67999999999988863 222122 33322
Q ss_pred CCCCCCCcEEEEcCcCCC---------CCChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYD---------ASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~---------~~~~~~l~~~l~~~L~p~ 169 (169)
...+.+||+|+++-..+. ......+++.+.+.|+|+
T Consensus 84 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 128 (185)
T 3mti_A 84 HYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG 128 (185)
T ss_dssp GTCCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE
T ss_pred hhccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC
Confidence 123568999987632221 133456788999999985
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-14 Score=110.34 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=76.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++... .+.+. .++......+.+||+|++..+
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~~---~v~~~---~~d~~~~~~~~~fD~v~~~~~ 112 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEAS--EEAISHAQGRLKD---GITYI---HSRFEDAQLPRRYDNIVLTHV 112 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESC--HHHHHHHHHHSCS---CEEEE---ESCGGGCCCSSCEEEEEEESC
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCC--HHHHHHHHHhhhC---CeEEE---EccHHHcCcCCcccEEEEhhH
Confidence 467799999999999999999999999999999 5699999887653 33333 233333334568999999999
Q ss_pred CCCCCChHHHHHHHH-HhccCC
Q 030935 149 FYDASGKICAFEILI-CSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~-~~L~p~ 169 (169)
+++..+.+.+++.+. +.|+|+
T Consensus 113 l~~~~~~~~~l~~~~~~~Lkpg 134 (250)
T 2p7i_A 113 LEHIDDPVALLKRINDDWLAEG 134 (250)
T ss_dssp GGGCSSHHHHHHHHHHTTEEEE
T ss_pred HHhhcCHHHHHHHHHHHhcCCC
Confidence 999999999999999 999985
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.53 E-value=7.2e-14 Score=107.79 Aligned_cols=109 Identities=15% Similarity=0.026 Sum_probs=82.0
Q ss_pred HHHHHHHh-ccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 57 ILAEYVWQ-QRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 57 ~La~~l~~-~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
.+.+.+.. .....++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++++.....++.+...++.+ .+.
T Consensus 25 ~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~--~~~ 100 (263)
T 2yqz_A 25 QIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDAD--AAMLEVFRQKIAGVDRKVQVVQADARA--IPL 100 (263)
T ss_dssp HHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESC--HHHHHHHHHHTTTSCTTEEEEESCTTS--CCS
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECC--HHHHHHHHHHhhccCCceEEEEccccc--CCC
Confidence 34444433 2233467899999999999999999999999999999 569999998872222234433333322 123
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||+|+++.++++..+.+.+++.+.+.|+|+
T Consensus 101 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 134 (263)
T 2yqz_A 101 PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPG 134 (263)
T ss_dssp CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEE
T ss_pred CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCC
Confidence 3468999999999999999999999999999985
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=6.1e-14 Score=113.96 Aligned_cols=108 Identities=20% Similarity=0.229 Sum_probs=83.3
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI 135 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~ 135 (169)
..+.+.++....++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.++++++.+++..++. +..++... +.
T Consensus 54 ~~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~---~l~~a~~~~~~~~~~~~v~-~~~~d~~~~~~ 129 (349)
T 3q7e_A 54 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS---ISDYAVKIVKANKLDHVVT-IIKGKVEEVEL 129 (349)
T ss_dssp HHHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST---HHHHHHHHHHHTTCTTTEE-EEESCTTTCCC
T ss_pred HHHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH---HHHHHHHHHHHcCCCCcEE-EEECcHHHccC
Confidence 334455544456789999999999999999999987 999999993 9999999999998864332 33334332 23
Q ss_pred CCCCCcEEEEcCc---CCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADV---FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~---iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+||+|++..+ +++....+.+++.+.+.|+|+
T Consensus 130 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~Lkpg 166 (349)
T 3q7e_A 130 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD 166 (349)
T ss_dssp SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCC
Confidence 3469999999765 345588999999999999985
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=111.63 Aligned_cols=124 Identities=16% Similarity=0.105 Sum_probs=89.0
Q ss_pred ceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHH
Q 030935 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (169)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n 113 (169)
.+.+.+.+.+..++ -..+.+....+++... ..++.+|||+|||+|.+++.+++.|++|+++|+++ .+++.+++|
T Consensus 88 ~~~~~l~p~~~fgt--g~~~tt~~~~~~l~~~--~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~--~~v~~a~~n 161 (254)
T 2nxc_A 88 EIPLVIEPGMAFGT--GHHETTRLALKALARH--LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEAN 161 (254)
T ss_dssp SEEEECCCC-------CCSHHHHHHHHHHHHH--CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHHH
T ss_pred ceEEEECCCccccC--CCCHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCH--HHHHHHHHH
Confidence 34455544444334 4467777777777655 24678999999999999999999999999999995 599999999
Q ss_pred HHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 114 CEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 114 ~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..|++.+++. .++........+||+|+++-+. ..+..+++.+.+.|+|+
T Consensus 162 ~~~~~~~v~~~---~~d~~~~~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~Lkpg 211 (254)
T 2nxc_A 162 AKRNGVRPRFL---EGSLEAALPFGPFDLLVANLYA---ELHAALAPRYREALVPG 211 (254)
T ss_dssp HHHTTCCCEEE---ESCHHHHGGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEE
T ss_pred HHHcCCcEEEE---ECChhhcCcCCCCCEEEECCcH---HHHHHHHHHHHHHcCCC
Confidence 99998764333 3333222334589999986432 23678899999999985
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=109.04 Aligned_cols=112 Identities=16% Similarity=0.055 Sum_probs=79.1
Q ss_pred cchHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEc
Q 030935 52 WPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTW 128 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~ 128 (169)
-|....+.+.+...... .++.+|||+|||+|.+++.+++.++ +|+++|++ +.+++.+++|++.+++ +++ +..
T Consensus 35 rp~~~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s--~~~l~~a~~~~~~~~~~~v~---~~~ 109 (202)
T 2fpo_A 35 RPTTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD--RAVSQQLIKNLATLKAGNAR---VVN 109 (202)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCSEE---EEC
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECC--HHHHHHHHHHHHHcCCCcEE---EEE
Confidence 34444444444332211 2678999999999999998888776 89999999 6799999999999887 333 333
Q ss_pred CCCCc--CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHh--ccCC
Q 030935 129 GFLDA--SIFDLNPNIILGADVFYDASGKICAFEILICS--LFPI 169 (169)
Q Consensus 129 ~~~~~--~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~--L~p~ 169 (169)
++... +....+||+|++..+ |.....+.+++.+.+. |+|+
T Consensus 110 ~D~~~~~~~~~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pg 153 (202)
T 2fpo_A 110 SNAMSFLAQKGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADE 153 (202)
T ss_dssp SCHHHHHSSCCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEE
T ss_pred CCHHHHHhhcCCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCC
Confidence 44322 223458999998655 7778888899998764 8874
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=108.33 Aligned_cols=108 Identities=12% Similarity=-0.072 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-------------CCcceE
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-------------KLNCRV 123 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-------------~~~~~~ 123 (169)
.|.+|+... ...++.+|||+|||+|..+..+++.|.+|+++|+| +.|++.++++.... ..++++
T Consensus 10 ~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ 86 (203)
T 1pjz_A 10 DLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELS--EAAVERYFTERGEQPHITSQGDFKVYAAPGIEI 86 (203)
T ss_dssp HHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEEC--HHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred HHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCC--HHHHHHHHHHccCCcccccccccccccCCccEE
Confidence 455565443 23367899999999999999999999999999999 56999998876431 223444
Q ss_pred EEEEcCCCCcCCCC-CCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 124 MGLTWGFLDASIFD-LNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 124 ~~l~~~~~~~~~~~-~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
...+..+. +..+ .+||+|++..++++.. ....+++.+++.|+|+
T Consensus 87 ~~~d~~~l--~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg 133 (203)
T 1pjz_A 87 WCGDFFAL--TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 133 (203)
T ss_dssp EEECCSSS--THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred EECccccC--CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC
Confidence 33333221 1122 5899999988887664 3456899999999996
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-14 Score=112.12 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=81.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-----ceEEEEEcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-----CRVMGLTWGFLD 132 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-----~~~~~l~~~~~~ 132 (169)
+.+++.......++.+|||+|||+|..++.+++.|++|+++|++ +.+++.+++++...+.. +.+...++....
T Consensus 45 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~ 122 (293)
T 3thr_A 45 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDAS--DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD 122 (293)
T ss_dssp HHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred HHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence 33444444333467899999999999999999999999999999 57999999987544332 222323332211
Q ss_pred cC-CCCCCCcEEEEc-CcCCCCCC-------hHHHHHHHHHhccCC
Q 030935 133 AS-IFDLNPNIILGA-DVFYDASG-------KICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~-~~~~~fDlIi~s-d~iy~~~~-------~~~l~~~l~~~L~p~ 169 (169)
.. ..+.+||+|++. .++++..+ ...+++.+.+.|+||
T Consensus 123 ~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkpg 168 (293)
T 3thr_A 123 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 168 (293)
T ss_dssp HHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEE
T ss_pred cccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCC
Confidence 00 245699999998 89999888 999999999999985
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=107.41 Aligned_cols=105 Identities=12% Similarity=0.057 Sum_probs=81.1
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
.+.+++..... ++.+|||+|||+|..+..+++.+++|+++|++ +.+++.++++.. ...+.+...+..+. +..
T Consensus 42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~--~~~~~~~~~d~~~~--~~~ 113 (242)
T 3l8d_A 42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDIS--EVMIQKGKERGE--GPDLSFIKGDLSSL--PFE 113 (242)
T ss_dssp THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHTTTC--BTTEEEEECBTTBC--SSC
T ss_pred HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECC--HHHHHHHHhhcc--cCCceEEEcchhcC--CCC
Confidence 34555554432 67899999999999999999999999999999 569999887752 22233333333322 234
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++..++++..+...+++.+.+.|+|+
T Consensus 114 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 146 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSD 146 (242)
T ss_dssp TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEE
T ss_pred CCCccEEEEcChHhhccCHHHHHHHHHHHhCCC
Confidence 569999999999999999999999999999985
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=109.25 Aligned_cols=95 Identities=14% Similarity=-0.059 Sum_probs=78.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC-c
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD-V 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd-~ 148 (169)
++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++...++..+.+... +......+.+||+|+++. +
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s--~~~~~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~fD~v~~~~~~ 111 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLS--QEMLSEAENKFRSQGLKPRLACQ---DISNLNINRKFDLITCCLDS 111 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSC--HHHHHHHHHHHHHTTCCCEEECC---CGGGCCCSCCEEEEEECTTG
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECC--HHHHHHHHHHHhhcCCCeEEEec---ccccCCccCCceEEEEcCcc
Confidence 67899999999999999999999999999999 56999999999877765544433 332222236899999997 9
Q ss_pred CCCC---CChHHHHHHHHHhccCC
Q 030935 149 FYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
+++. .+...+++.+.+.|+|+
T Consensus 112 l~~~~~~~~~~~~l~~~~~~L~pg 135 (246)
T 1y8c_A 112 TNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp GGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCC
Confidence 9888 67888999999999985
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=111.04 Aligned_cols=97 Identities=12% Similarity=-0.012 Sum_probs=76.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++.+|||+|||+|..++.+++.+.+|+++|++ +.+++.+++|++.+++..++. +..++......+.+||+|+++.++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDID--PVKIALARNNAEVYGIADKIE-FICGDFLLLASFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCGGGEE-EEESCHHHHGGGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCCcCeE-EEECChHHhcccCCCCEEEECCCc
Confidence 67899999999999999999999999999999 579999999999998732222 333343222244699999998888
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
++.......+..+.+.|+|+
T Consensus 155 ~~~~~~~~~~~~~~~~L~pg 174 (241)
T 3gdh_A 155 GGPDYATAETFDIRTMMSPD 174 (241)
T ss_dssp SSGGGGGSSSBCTTTSCSSC
T ss_pred CCcchhhhHHHHHHhhcCCc
Confidence 87776666666777778875
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-14 Score=109.18 Aligned_cols=105 Identities=9% Similarity=-0.075 Sum_probs=77.8
Q ss_pred HHHHHHHHhccC-CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 56 VILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 56 ~~La~~l~~~~~-~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
..+.+.+..... ..++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++ +++...+..+...+
T Consensus 26 ~~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~-------~~~~~~d~~~~~~~ 96 (240)
T 3dli_A 26 ELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDIN--EDMIKFCEGK-------FNVVKSDAIEYLKS 96 (240)
T ss_dssp HHHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSC--HHHHHHHHTT-------SEEECSCHHHHHHT
T ss_pred HHHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECC--HHHHHHHHhh-------cceeeccHHHHhhh
Confidence 334444433322 3356899999999999999999999999999999 5699988876 22222222111113
Q ss_pred CCCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|++..++++.. .+..+++.+.+.|+|+
T Consensus 97 ~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 133 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYS 133 (240)
T ss_dssp SCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTT
T ss_pred cCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCC
Confidence 4556999999999999998 5599999999999996
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=105.80 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++. +. .+...+.... ..+.+||+|+++.++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~---~~--~~~~~d~~~~---~~~~~fD~v~~~~~l 112 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGS--PELAAEASRRL---GR--PVRTMLFHQL---DAIDAYDAVWAHACL 112 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHH---TS--CCEECCGGGC---CCCSCEEEEEECSCG
T ss_pred CCCcEEEECCCCCHHHHHHHHcCCeEEEECCC--HHHHHHHHHhc---CC--ceEEeeeccC---CCCCcEEEEEecCch
Confidence 57899999999999999999999999999999 56999999887 22 2232333322 245699999999999
Q ss_pred CCCC--ChHHHHHHHHHhccCC
Q 030935 150 YDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~--~~~~l~~~l~~~L~p~ 169 (169)
++.. ....+++.+.+.|+|+
T Consensus 113 ~~~~~~~~~~~l~~~~~~Lkpg 134 (211)
T 3e23_A 113 LHVPRDELADVLKLIWRALKPG 134 (211)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEE
T ss_pred hhcCHHHHHHHHHHHHHhcCCC
Confidence 9987 8889999999999985
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=108.13 Aligned_cols=97 Identities=16% Similarity=0.056 Sum_probs=77.2
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
...++.+|||+|||+|..+..+++.+. +|+++|++ +.+++.++++...+ .+.+...+.... +..+.+||+|++
T Consensus 40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~--~~~~~~~d~~~~--~~~~~~fD~v~~ 113 (243)
T 3bkw_A 40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLS--EKMLARARAAGPDT--GITYERADLDKL--HLPQDSFDLAYS 113 (243)
T ss_dssp CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHTSCSS--SEEEEECCGGGC--CCCTTCEEEEEE
T ss_pred cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCC--HHHHHHHHHhcccC--CceEEEcChhhc--cCCCCCceEEEE
Confidence 344678999999999999999999988 99999999 56999998876543 233332322221 233468999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.++++..+...+++.+.+.|+|+
T Consensus 114 ~~~l~~~~~~~~~l~~~~~~L~pg 137 (243)
T 3bkw_A 114 SLALHYVEDVARLFRTVHQALSPG 137 (243)
T ss_dssp ESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred eccccccchHHHHHHHHHHhcCcC
Confidence 999999999999999999999985
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-13 Score=103.12 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++ +|||+|||+|..+..+++.+.+|+++|++ +.+++.++++...++..+.+...+..+. +..+.+||+|+++.+.
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~fD~v~~~~~~ 104 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQS--SVGLAKAKQLAQEKGVKITTVQSNLADF--DIVADAWEGIVSIFCH 104 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTCEEEEECSS--HHHHHHHHHHHHHHTCCEEEECCBTTTB--SCCTTTCSEEEEECCC
T ss_pred CC-CEEEECCCCCHhHHHHHhCCCeEEEEECC--HHHHHHHHHHHHhcCCceEEEEcChhhc--CCCcCCccEEEEEhhc
Confidence 45 99999999999999999999999999999 5799999999988876554443333222 2334689999997554
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
+.......+++.+.+.|+|+
T Consensus 105 ~~~~~~~~~l~~~~~~L~pg 124 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPG 124 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSS
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 44467888999999999996
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=111.64 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=80.3
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFD 137 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~ 137 (169)
+.+.+.....++++|||+|||+|.+++.+++.|+ +|+++|+++ +++.++++++.+++..++. +..++... ....
T Consensus 28 ~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~---~~~~a~~~~~~~~~~~~i~-~~~~d~~~~~~~~ 103 (328)
T 1g6q_1 28 NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKIT-LLRGKLEDVHLPF 103 (328)
T ss_dssp HHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST---HHHHHHHHHHHTTCTTTEE-EEESCTTTSCCSS
T ss_pred HHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHH---HHHHHHHHHHHcCCCCCEE-EEECchhhccCCC
Confidence 3444333345788999999999999999999987 899999993 8999999999998764433 33344333 2233
Q ss_pred CCCcEEEEcCcC---CCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVF---YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~i---y~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|++..+. .+...++.++..+.+.|+|+
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkpg 138 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCC
Confidence 689999997543 45677889999999999985
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=106.20 Aligned_cols=92 Identities=17% Similarity=0.005 Sum_probs=74.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.. ..+.+. .++......+.+||+|++..++
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~~~---~~~~~~---~~d~~~~~~~~~fD~v~~~~~l 116 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPS--REMRMIAKEKLP---KEFSIT---EGDFLSFEVPTSIDTIVSTYAF 116 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSC--HHHHHHHHHHSC---TTCCEE---SCCSSSCCCCSCCSEEEEESCG
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCC--HHHHHHHHHhCC---CceEEE---eCChhhcCCCCCeEEEEECcch
Confidence 57899999999999999999999999999999 569999988765 223333 2333222222799999999999
Q ss_pred CCCCChHH--HHHHHHHhccCC
Q 030935 150 YDASGKIC--AFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~--l~~~l~~~L~p~ 169 (169)
++....+. +++.+.+.|+|+
T Consensus 117 ~~~~~~~~~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 117 HHLTDDEKNVAIAKYSQLLNKG 138 (220)
T ss_dssp GGSCHHHHHHHHHHHHHHSCTT
T ss_pred hcCChHHHHHHHHHHHHhcCCC
Confidence 99988877 999999999996
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-13 Score=106.51 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~ 139 (169)
+.......++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.++++ ...+.+...+..+. + .+.+
T Consensus 25 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s--~~~~~~a~~~----~~~~~~~~~d~~~~--~-~~~~ 95 (259)
T 2p35_A 25 LLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD--DDMLEKAADR----LPNTNFGKADLATW--K-PAQK 95 (259)
T ss_dssp HHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESC--HHHHHHHHHH----STTSEEEECCTTTC--C-CSSC
T ss_pred HHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHh----CCCcEEEECChhhc--C-ccCC
Confidence 444444456789999999999999999987 7799999999 5699998887 22334443333322 2 3568
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|+++.++++..+...+++.+.+.|+|+
T Consensus 96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 125 (259)
T 2p35_A 96 ADLLYANAVFQWVPDHLAVLSQLMDQLESG 125 (259)
T ss_dssp EEEEEEESCGGGSTTHHHHHHHHGGGEEEE
T ss_pred cCEEEEeCchhhCCCHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999985
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=109.44 Aligned_cols=106 Identities=11% Similarity=-0.048 Sum_probs=81.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH---hCCeEEEEcCCCcHHHHHHHHHHHHHh---CCcceEEEEEcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK---VGSNVTLTDDSNRIEVLKNMRRVCEMN---KLNCRVMGLTWGFL 131 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~---~ga~V~~~D~~~~~~~l~~~~~n~~~n---~~~~~~~~l~~~~~ 131 (169)
+.+++..... .++.+|||+|||+|..+..+++ .+.+|+++|++ +.+++.++++++.+ ...+.+...+..+.
T Consensus 25 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~ 101 (299)
T 3g5t_A 25 FYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLS--ATMIKTAEVIKEGSPDTYKNVSFKISSSDDF 101 (299)
T ss_dssp HHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESC--HHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred HHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence 4445544322 3678999999999999999995 45699999999 57999999999876 33444444444332
Q ss_pred CcCCCC------CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DASIFD------LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~------~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+... .+||+|+++.++++. +...+++.+.+.|+||
T Consensus 102 --~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~Lkpg 142 (299)
T 3g5t_A 102 --KFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKD 142 (299)
T ss_dssp --GGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEE
T ss_pred --CccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCC
Confidence 2223 589999999999999 9999999999999985
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=105.82 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=76.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.+++++..++ .+.+. .++......+.+||+|++
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~-~~~~~---~~d~~~~~~~~~fD~v~~ 115 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMS--EKMLEIAKNRFRGNL-KVKYI---EADYSKYDFEEKYDMVVS 115 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHTCSCT-TEEEE---ESCTTTCCCCSCEEEEEE
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHhhccCC-CEEEE---eCchhccCCCCCceEEEE
Confidence 446789999999999999999998 6699999999 569999999886555 44433 334333223369999999
Q ss_pred cCcCCCCCChH--HHHHHHHHhccCC
Q 030935 146 ADVFYDASGKI--CAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~--~l~~~l~~~L~p~ 169 (169)
+.++++....+ .+++.+.+.|+|+
T Consensus 116 ~~~l~~~~~~~~~~~l~~~~~~Lkpg 141 (234)
T 3dtn_A 116 ALSIHHLEDEDKKELYKRSYSILKES 141 (234)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred eCccccCCHHHHHHHHHHHHHhcCCC
Confidence 99999987655 5999999999985
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-14 Score=105.60 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=79.0
Q ss_pred eecchHHHHHHHHHhccC-CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 50 FVWPCSVILAEYVWQQRY-RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~-~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
...|....+.+.+..... ..++++|||+|||+|..++.+++.+. +|+++|++ +.+++.+++|++.+++..++. +.
T Consensus 10 ~~rp~~~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~-~~ 86 (177)
T 2esr_A 10 ITRPTSDKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKN--RKAQAIIQDNIIMTKAENRFT-LL 86 (177)
T ss_dssp --------CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCC--HHHHHHHHHHHHTTTCGGGEE-EE
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHcCCCCceE-EE
Confidence 344555555666655433 45778999999999999999998875 99999999 579999999999888753332 33
Q ss_pred cCCCCc--CCCCCCCcEEEEcCcCCCCCChHHHHHHHH--HhccCC
Q 030935 128 WGFLDA--SIFDLNPNIILGADVFYDASGKICAFEILI--CSLFPI 169 (169)
Q Consensus 128 ~~~~~~--~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~--~~L~p~ 169 (169)
.++... ...+.+||+|++..+ |.....+.+++.+. +.|+|+
T Consensus 87 ~~d~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~g 131 (177)
T 2esr_A 87 KMEAERAIDCLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQ 131 (177)
T ss_dssp CSCHHHHHHHBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEE
T ss_pred ECcHHHhHHhhcCCCCEEEECCC-CCcchHHHHHHHHHhCCCcCCC
Confidence 444322 122357999998654 54456677888887 788874
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-14 Score=111.37 Aligned_cols=100 Identities=11% Similarity=-0.003 Sum_probs=76.1
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
|.+++.+... .+.+|||||||+|..+..+++.+.+|+++|++ +.|++.++++ .++.+...+..+ .++.+
T Consensus 29 l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s--~~ml~~a~~~-----~~v~~~~~~~e~--~~~~~ 97 (257)
T 4hg2_A 29 LFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPG--EAQIRQALRH-----PRVTYAVAPAED--TGLPP 97 (257)
T ss_dssp HHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESC--HHHHHTCCCC-----TTEEEEECCTTC--CCCCS
T ss_pred HHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCc--HHhhhhhhhc-----CCceeehhhhhh--hcccC
Confidence 5567766543 45689999999999999999999999999999 5698876532 223333222222 23455
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|+++.++|+. +.+.+++.+++.||||
T Consensus 98 ~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpg 128 (257)
T 4hg2_A 98 ASVDVAIAAQAMHWF-DLDRFWAELRRVARPG 128 (257)
T ss_dssp SCEEEEEECSCCTTC-CHHHHHHHHHHHEEEE
T ss_pred CcccEEEEeeehhHh-hHHHHHHHHHHHcCCC
Confidence 699999999999877 5889999999999996
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=110.58 Aligned_cols=102 Identities=13% Similarity=-0.008 Sum_probs=79.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
.+++++.+.....++.+|||+|||+|..+..+++.+++|+++|++ +.+++.++.+. ++.+...++.+ .+..
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~-----~~~~~~~d~~~--~~~~ 91 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPS--IVMRQQAVVHP-----QVEWFTGYAEN--LALP 91 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSC--HHHHHSSCCCT-----TEEEECCCTTS--CCSC
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCC--HHHHHHHHhcc-----CCEEEECchhh--CCCC
Confidence 456666665555578899999999999999999988999999999 56888766543 33333233222 1334
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
+.+||+|++..++++..+.+.+++.+.+.|+
T Consensus 92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk 122 (261)
T 3ege_A 92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR 122 (261)
T ss_dssp TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC
T ss_pred CCCEeEEEEcchHhhccCHHHHHHHHHHHhC
Confidence 5699999999999999999999999999998
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.4e-13 Score=106.66 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=84.2
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEc
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~ 128 (169)
-|.+..+.+++..... .++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|++.+++. +. +..
T Consensus 92 r~~te~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s--~~~l~~a~~n~~~~~~~~v~---~~~ 165 (276)
T 2b3t_A 92 RPDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRM--PDAVSLAQRNAQHLAIKNIH---ILQ 165 (276)
T ss_dssp CTTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSS--HHHHHHHHHHHHHHTCCSEE---EEC
T ss_pred CchHHHHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCceE---EEE
Confidence 4667788888776543 45679999999999999999975 5699999999 57999999999988875 33 334
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCC-------------------------CChHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDA-------------------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~-------------------------~~~~~l~~~l~~~L~p~ 169 (169)
++......+.+||+|+++.+.... ..+..+++.+.+.|+|+
T Consensus 166 ~d~~~~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkpg 231 (276)
T 2b3t_A 166 SDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSG 231 (276)
T ss_dssp CSTTGGGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEE
T ss_pred cchhhhcccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCC
Confidence 444433335689999997544322 23467888888899885
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-13 Score=102.06 Aligned_cols=91 Identities=13% Similarity=-0.030 Sum_probs=73.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.. .+.+...+..+. +..+.+||+|++..+++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~----~~~~~~~d~~~~--~~~~~~fD~v~~~~~l~ 113 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPA--TRLVELARQTHP----SVTFHHGTITDL--SDSPKRWAGLLAWYSLI 113 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCC--HHHHHHHHHHCT----TSEEECCCGGGG--GGSCCCEEEEEEESSST
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHhCC----CCeEEeCccccc--ccCCCCeEEEEehhhHh
Confidence 6799999999999999999999999999999 569999888632 333333333221 23356999999999999
Q ss_pred CCC--ChHHHHHHHHHhccCC
Q 030935 151 DAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 151 ~~~--~~~~l~~~l~~~L~p~ 169 (169)
+.. +...+++.+.+.|+|+
T Consensus 114 ~~~~~~~~~~l~~~~~~L~pg 134 (203)
T 3h2b_A 114 HMGPGELPDALVALRMAVEDG 134 (203)
T ss_dssp TCCTTTHHHHHHHHHHTEEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCC
Confidence 886 8999999999999985
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.2e-15 Score=110.38 Aligned_cols=110 Identities=6% Similarity=-0.042 Sum_probs=85.1
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
|.=..+-..+.... .+..+|||||||+|.+++.++.. +++|+++|++ ++|++.+++|+..++...++.. .+
T Consensus 34 p~ld~fY~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~--~~~leiar~~~~~~g~~~~v~~---~d 106 (200)
T 3fzg_A 34 ATLNDFYTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDID--RAEIAFLSSIIGKLKTTIKYRF---LN 106 (200)
T ss_dssp GGHHHHHHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSC--HHHHHHHHHHHHHSCCSSEEEE---EC
T ss_pred HhHHHHHHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCccEEE---ec
Confidence 44444444444443 24569999999999999999886 5699999999 5799999999999998755443 23
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
......+.+||+|++..+++...+.+..+..+.+.|+|+
T Consensus 107 ~~~~~~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pg 145 (200)
T 3fzg_A 107 KESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQ 145 (200)
T ss_dssp CHHHHTTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEE
T ss_pred ccccCCCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCC
Confidence 333345568999999999999877777777999999885
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.7e-15 Score=112.46 Aligned_cols=114 Identities=14% Similarity=0.106 Sum_probs=85.1
Q ss_pred eeecchHH--HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEE
Q 030935 49 LFVWPCSV--ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMG 125 (169)
Q Consensus 49 ~~~W~~~~--~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~ 125 (169)
+.-|+..+ .+++.+ ..+|.+|||||||+|..+..+++.+ ++|+++|++ +.+++.++++.+..+..+++..
T Consensus 42 m~~we~~~m~~~a~~~-----~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~--~~~~~~a~~~~~~~~~~~~~~~ 114 (236)
T 3orh_A 42 MERWETPYMHALAAAA-----SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECN--DGVFQRLRDWAPRQTHKVIPLK 114 (236)
T ss_dssp EEGGGHHHHHHHHHHH-----TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECC--HHHHHHHHHHGGGCSSEEEEEE
T ss_pred HHHHHHHHHHHHHHhh-----ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCC--HHHHHHHHHHHhhCCCceEEEe
Confidence 34587542 333333 2367899999999999999998865 589999999 6799999999988887777665
Q ss_pred EEcCCCCcCCCCCCCcEEEE-----cCcCCCCCChHHHHHHHHHhccCC
Q 030935 126 LTWGFLDASIFDLNPNIILG-----ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~~~~~~~~~fDlIi~-----sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+|.+......+.+||.|+. ....++..+.+.+++.+++.||||
T Consensus 115 ~~a~~~~~~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG 163 (236)
T 3orh_A 115 GLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp SCHHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred ehHHhhcccccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCC
Confidence 66655444455668999974 223345566788999999999996
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=107.87 Aligned_cols=109 Identities=12% Similarity=-0.089 Sum_probs=78.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH------------------h
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM------------------N 117 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~------------------n 117 (169)
..+.+|+.......++.+|||+|||+|..+..+++.|.+|+++|++ +.|++.++++... .
T Consensus 54 ~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S--~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (252)
T 2gb4_A 54 QLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEIS--EIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS 131 (252)
T ss_dssp HHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSC--HHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred HHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECC--HHHHHHHHHhcccccccccccccccccccccC
Confidence 3566666543322367899999999999999999999999999999 5699998765531 1
Q ss_pred CCcceEEEEEcCCCCcCCCC--CCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 118 KLNCRVMGLTWGFLDASIFD--LNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~~~~l~~~~~~~~~~~--~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+.+++ +..++....... .+||+|++..++++.. ..+.+++.+.+.|+||
T Consensus 132 ~~~i~---~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpG 184 (252)
T 2gb4_A 132 SGSIS---LYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKE 184 (252)
T ss_dssp TSSEE---EEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred CCceE---EEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCC
Confidence 12233 334454332222 6899999988887654 4567899999999995
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=103.61 Aligned_cols=123 Identities=15% Similarity=0.029 Sum_probs=89.3
Q ss_pred ceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHH
Q 030935 34 SFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 34 ~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
...+.+.+.+.... ..++....+.+++.... .++.+|||+|||+|..++.+++.+. +|+++|++ +.+++.+++
T Consensus 28 ~~~~~~~~~~~f~~--~~~~~~~~~~~~l~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~ 101 (205)
T 3grz_A 28 QEIIRLDPGLAFGT--GNHQTTQLAMLGIERAM--VKPLTVADVGTGSGILAIAAHKLGAKSVLATDIS--DESMTAAEE 101 (205)
T ss_dssp CEEEEESCC-------CCHHHHHHHHHHHHHHC--SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESC--HHHHHHHHH
T ss_pred ceeEEecCCcccCC--CCCccHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECC--HHHHHHHHH
Confidence 44455544443333 35688888888887653 2678999999999999999999876 89999999 569999999
Q ss_pred HHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 113 VCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 113 n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+..++.. +++. .++... ..+.+||+|+++.++.+ +..+++.+.+.|+|+
T Consensus 102 ~~~~~~~~~v~~~---~~d~~~-~~~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~g 152 (205)
T 3grz_A 102 NAALNGIYDIALQ---KTSLLA-DVDGKFDLIVANILAEI---LLDLIPQLDSHLNED 152 (205)
T ss_dssp HHHHTTCCCCEEE---ESSTTT-TCCSCEEEEEEESCHHH---HHHHGGGSGGGEEEE
T ss_pred HHHHcCCCceEEE---eccccc-cCCCCceEEEECCcHHH---HHHHHHHHHHhcCCC
Confidence 99988876 4433 334322 23469999999866543 577788888888874
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=101.36 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=77.1
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI- 135 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~- 135 (169)
.+...+.+.....++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++|++.++.. ++ .+..++.....
T Consensus 64 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~-~v-~~~~~d~~~~~~ 139 (210)
T 3lbf_A 64 YMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERI--KGLQWQARRRLKNLDLH-NV-STRHGDGWQGWQ 139 (210)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHHHHHHHTTCC-SE-EEEESCGGGCCG
T ss_pred HHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecC--HHHHHHHHHHHHHcCCC-ce-EEEECCcccCCc
Confidence 344444444455678899999999999999999998899999999 57999999999988765 22 23334433322
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+||+|++..++++... .+.+.|+|+
T Consensus 140 ~~~~~D~i~~~~~~~~~~~------~~~~~L~pg 167 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEIPT------ALMTQLDEG 167 (210)
T ss_dssp GGCCEEEEEESSBCSSCCT------HHHHTEEEE
T ss_pred cCCCccEEEEccchhhhhH------HHHHhcccC
Confidence 2458999999988877653 577788874
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=102.88 Aligned_cols=93 Identities=18% Similarity=0.072 Sum_probs=74.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.+++ ++ .++.+. .++......+.+||+|+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~----~~~~~~~~~---~~d~~~~~~~~~~D~v~~~ 114 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGS--AEMIAEAGR----HGLDNVEFR---QQDLFDWTPDRQWDAVFFA 114 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHGG----GCCTTEEEE---ECCTTSCCCSSCEEEEEEE
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHh----cCCCCeEEE---ecccccCCCCCceeEEEEe
Confidence 3456799999999999999999999999999999 569998887 33 233333 3443333445699999999
Q ss_pred CcCCCCCCh--HHHHHHHHHhccCC
Q 030935 147 DVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
.++++.... ..+++.+.+.|+|+
T Consensus 115 ~~l~~~~~~~~~~~l~~~~~~L~pg 139 (218)
T 3ou2_A 115 HWLAHVPDDRFEAFWESVRSAVAPG 139 (218)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCC
Confidence 999998874 89999999999985
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=105.74 Aligned_cols=107 Identities=16% Similarity=0.078 Sum_probs=79.9
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCc----HHHHHHHHHHHHHhCCcceEEEEEcCC-C--
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNR----IEVLKNMRRVCEMNKLNCRVMGLTWGF-L-- 131 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~----~~~l~~~~~n~~~n~~~~~~~~l~~~~-~-- 131 (169)
+.......++.+|||+|||+|..+..+++. | .+|+++|+++. +.+++.+++++..+++..++. +..++ .
T Consensus 35 l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~ 113 (275)
T 3bkx_A 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLT-VHFNTNLSD 113 (275)
T ss_dssp HHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEE-EECSCCTTT
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceE-EEECChhhh
Confidence 333334557889999999999999999987 4 69999999951 128999999998877643333 22332 2
Q ss_pred -CcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 -DASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 -~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+..+.+||+|++..++++..+.+.+++.+..+++|+
T Consensus 114 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~g 152 (275)
T 3bkx_A 114 DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVC 152 (275)
T ss_dssp CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTC
T ss_pred ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCC
Confidence 11223468999999999999999988888888888765
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.5e-15 Score=109.73 Aligned_cols=112 Identities=18% Similarity=0.049 Sum_probs=65.7
Q ss_pred chHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 53 PCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
|.+..+.+++...... .++.+|||+|||+|..++.+++.+ .+|+++|+++ .+++.+++|+..++.++++ ..+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~~~~~~~---~~~ 86 (215)
T 4dzr_A 12 PDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSM--DALAVARRNAERFGAVVDW---AAA 86 (215)
T ss_dssp HHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------C---CHH
T ss_pred ccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCH--HHHHHHHHHHHHhCCceEE---EEc
Confidence 4466677777665433 567899999999999999999984 4999999995 5999999999887763322 223
Q ss_pred CCCcCCCC-----CCCcEEEEcCcCCCCCCh--------------------------HHHHHHHHHhccCC
Q 030935 130 FLDASIFD-----LNPNIILGADVFYDASGK--------------------------ICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~~~-----~~fDlIi~sd~iy~~~~~--------------------------~~l~~~l~~~L~p~ 169 (169)
+....... .+||+|+++.+++..... ..+++.+.+.|+|+
T Consensus 87 d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 157 (215)
T 4dzr_A 87 DGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARG 157 (215)
T ss_dssp HHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSS
T ss_pred chHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCC
Confidence 32222222 699999997776544332 67788888899886
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=98.11 Aligned_cols=104 Identities=14% Similarity=0.022 Sum_probs=80.0
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFL 131 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~ 131 (169)
+....+..++.......++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.+++. +.+ ..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~---~~~d~ 92 (183)
T 2yxd_A 18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYL--DGAIEVTKQNLAKFNIKNCQI---IKGRA 92 (183)
T ss_dssp CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECS--HHHHHHHHHHHHHTTCCSEEE---EESCH
T ss_pred cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHHHHHcCCCcEEE---EECCc
Confidence 4445566666665555678899999999999999999977799999999 57999999999988863 333 33443
Q ss_pred CcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHh
Q 030935 132 DASIFDLNPNIILGADVFYDASGKICAFEILICS 165 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~ 165 (169)
.......+||+|+++.+ ...+.+++.+.+.
T Consensus 93 ~~~~~~~~~D~i~~~~~----~~~~~~l~~~~~~ 122 (183)
T 2yxd_A 93 EDVLDKLEFNKAFIGGT----KNIEKIIEILDKK 122 (183)
T ss_dssp HHHGGGCCCSEEEECSC----SCHHHHHHHHHHT
T ss_pred cccccCCCCcEEEECCc----ccHHHHHHHHhhC
Confidence 33333358999999988 7788888888876
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.8e-13 Score=100.33 Aligned_cols=110 Identities=15% Similarity=0.005 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
....+..++.......++.+|||+|||+|..++.+++.+.+|+++|++ +.+++.+++|+..++...++. +..++...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~ 93 (192)
T 1l3i_A 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRN--PEAISTTEMNLQRHGLGDNVT-LMEGDAPE 93 (192)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCTTEE-EEESCHHH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECC--HHHHHHHHHHHHHcCCCcceE-EEecCHHH
Confidence 444555666655556678899999999999999999988899999999 569999999999887732222 22233222
Q ss_pred CCCC-CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SIFD-LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~-~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.... .+||+|+++.++. .+..+++.+.+.|+|+
T Consensus 94 ~~~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~g 127 (192)
T 1l3i_A 94 ALCKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPG 127 (192)
T ss_dssp HHTTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEE
T ss_pred hcccCCCCCEEEECCchH---HHHHHHHHHHHhcCCC
Confidence 2222 4899999987764 5689999999999985
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=104.78 Aligned_cols=96 Identities=21% Similarity=0.121 Sum_probs=75.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC-
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD- 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd- 147 (169)
.++.+|||+|||+|..++.+++.|.+|+++|++ +.+++.+++++..++.++.+...+..+ ...+.+||+|++..
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~v~~~~~ 114 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLH--EEMLRVARRKAKERNLKIEFLQGDVLE---IAFKNEFDAVTMFFS 114 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCCEEEESCGGG---CCCCSCEEEEEECSS
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECC--HHHHHHHHHHHHhcCCceEEEECChhh---cccCCCccEEEEcCC
Confidence 456799999999999999999999999999999 579999999998887765554433332 22345899999753
Q ss_pred cCC--CCCChHHHHHHHHHhccCC
Q 030935 148 VFY--DASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy--~~~~~~~l~~~l~~~L~p~ 169 (169)
.++ +......+++.+.+.|+|+
T Consensus 115 ~~~~~~~~~~~~~l~~~~~~L~pg 138 (252)
T 1wzn_A 115 TIMYFDEEDLRKLFSKVAEALKPG 138 (252)
T ss_dssp GGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred chhcCCHHHHHHHHHHHHHHcCCC
Confidence 222 2346788999999999985
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.7e-13 Score=105.85 Aligned_cols=111 Identities=19% Similarity=0.148 Sum_probs=81.9
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH---hCCc--ceEEE
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM---NKLN--CRVMG 125 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~---n~~~--~~~~~ 125 (169)
-.+.+|+.|+. ..++.+|||+|||+|.+++.+++.. .+|+++|++ +.+++.+++|+.. +++. +.+..
T Consensus 23 ~D~~lL~~~~~----~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~--~~~~~~a~~n~~~~~~~~l~~~v~~~~ 96 (260)
T 2ozv_A 23 MDAMLLASLVA----DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERS--QEMAEFARRSLELPDNAAFSARIEVLE 96 (260)
T ss_dssp CHHHHHHHTCC----CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESS--HHHHHHHHHHTTSGGGTTTGGGEEEEE
T ss_pred cHHHHHHHHhc----ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHHHhhhhCCCcceEEEEe
Confidence 57888888763 3356799999999999999999985 489999999 5799999999998 8776 33333
Q ss_pred EEcCCCCc-----CCCCCCCcEEEEcCcCCCC------------------CChHHHHHHHHHhccCC
Q 030935 126 LTWGFLDA-----SIFDLNPNIILGADVFYDA------------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~~~-----~~~~~~fDlIi~sd~iy~~------------------~~~~~l~~~l~~~L~p~ 169 (169)
.++.+... ...+.+||+|+++.+++.. ..++.+++.+.+.|+|+
T Consensus 97 ~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 163 (260)
T 2ozv_A 97 ADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSG 163 (260)
T ss_dssp CCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEE
T ss_pred CCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence 33332210 1234689999998666543 24788999999999985
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.2e-14 Score=102.70 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=74.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++ ...+++. .++ .+..+.+||+|+++.+
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~----~~~v~~~---~~d--~~~~~~~~D~v~~~~~ 84 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDIN--VIALKEVKEK----FDSVITL---SDP--KEIPDNSVDFILFANS 84 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSC--HHHHHHHHHH----CTTSEEE---SSG--GGSCTTCEEEEEEESC
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCC--HHHHHHHHHh----CCCcEEE---eCC--CCCCCCceEEEEEccc
Confidence 367799999999999999999987799999999 5699999887 2223322 233 3344568999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++..+...+++.+.+.|+|+
T Consensus 85 l~~~~~~~~~l~~~~~~L~pg 105 (170)
T 3i9f_A 85 FHDMDDKQHVISEVKRILKDD 105 (170)
T ss_dssp STTCSCHHHHHHHHHHHEEEE
T ss_pred hhcccCHHHHHHHHHHhcCCC
Confidence 999999999999999999985
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-14 Score=109.06 Aligned_cols=93 Identities=15% Similarity=0.092 Sum_probs=75.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++.+|||+|||+|..+..+++.+.+|+++|++ +.|++.++++. ..+.+...+.... ..+.+||+|+++.
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~----~~~~~~~~d~~~~---~~~~~fD~v~~~~ 125 (279)
T 3ccf_A 55 PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNA--ATMIEKARQNY----PHLHFDVADARNF---RVDKPLDAVFSNA 125 (279)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHC----TTSCEEECCTTTC---CCSSCEEEEEEES
T ss_pred CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECC--HHHHHHHHhhC----CCCEEEECChhhC---CcCCCcCEEEEcc
Confidence 3467899999999999999999988899999999 56999988765 2234443333332 2346899999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++++..+.+.+++.+.+.|+|+
T Consensus 126 ~l~~~~d~~~~l~~~~~~Lkpg 147 (279)
T 3ccf_A 126 MLHWVKEPEAAIASIHQALKSG 147 (279)
T ss_dssp CGGGCSCHHHHHHHHHHHEEEE
T ss_pred hhhhCcCHHHHHHHHHHhcCCC
Confidence 9999999999999999999985
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.2e-13 Score=108.37 Aligned_cols=108 Identities=17% Similarity=0.251 Sum_probs=81.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
..+.+.+.....++++|||+|||+|.+++.+++.|+ +|+++|.++ +++.++++++.+++..++. +..++......
T Consensus 38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~---~~~~a~~~~~~~~l~~~v~-~~~~d~~~~~~ 113 (348)
T 2y1w_A 38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST---MAQHAEVLVKSNNLTDRIV-VIPGKVEEVSL 113 (348)
T ss_dssp HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---HHHHHHHHHHHTTCTTTEE-EEESCTTTCCC
T ss_pred HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH---HHHHHHHHHHHcCCCCcEE-EEEcchhhCCC
Confidence 344555555556889999999999999999999886 999999994 7899999999988753333 23344333223
Q ss_pred CCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++..+.|+. +.....+..+.+.|+|+
T Consensus 114 ~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkpg 148 (348)
T 2y1w_A 114 PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPS 148 (348)
T ss_dssp SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEE
T ss_pred CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCC
Confidence 4589999998887754 45567777888999885
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=108.87 Aligned_cols=97 Identities=21% Similarity=0.090 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCCC-----CCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASIF-----DLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~~-----~~~fDlI 143 (169)
++.+|||+|||+|.+++.+++.|++|+++|++ +.+++.+++|++.|++.. ++. +..++...... ..+||+|
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s--~~al~~a~~n~~~~gl~~~~v~-~i~~D~~~~l~~~~~~~~~fD~I 229 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDAS--KKAIGWAKENQVLAGLEQAPIR-WICEDAMKFIQREERRGSTYDII 229 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSC--HHHHHHHHHHHHHHTCTTSCEE-EECSCHHHHHHHHHHHTCCBSEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCCccceE-EEECcHHHHHHHHHhcCCCceEE
Confidence 56799999999999999999999999999999 579999999999998763 222 44444332211 3589999
Q ss_pred EEcCcCCCC----------CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~----------~~~~~l~~~l~~~L~p~ 169 (169)
++..+.|.. ..+..+++.+.+.|+|+
T Consensus 230 i~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~Lkpg 265 (332)
T 2igt_A 230 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK 265 (332)
T ss_dssp EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred EECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 986554432 23678899999999986
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.47 E-value=9.4e-13 Score=99.33 Aligned_cols=98 Identities=13% Similarity=-0.130 Sum_probs=73.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
++.+|||||||+|.+++.+++.. .+|+++|++ +.+++.+++|+..+++. +.+...++.+......+.+||+|++.
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s--~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~ 118 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQ--KSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN 118 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcC--HHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence 46799999999999999999874 599999999 57999999999988873 44443333332112335589999988
Q ss_pred CcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 147 DVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
.+..+.. ..+.+++.+.+.|+|+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 149 (214)
T 1yzh_A 119 FSDPWPKKRHEKRRLTYKTFLDTFKRILPEN 149 (214)
T ss_dssp SCCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred CCCCccccchhhhccCCHHHHHHHHHHcCCC
Confidence 5533222 3468999999999996
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=105.21 Aligned_cols=95 Identities=13% Similarity=-0.085 Sum_probs=74.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCc-CCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA-SIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~-~~~~~~fDlIi~s 146 (169)
++.+|||+|||+|..+..+++.+. +|+++|++ +.+++.+++++..++ ..+.+. .++... ...+.+||+|++.
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~---~~d~~~~~~~~~~fD~v~~~ 153 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDIT--EDFLVQAKTYLGEEGKRVRNYF---CCGLQDFTPEPDSYDVIWIQ 153 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESC--HHHHHHHHHHTGGGGGGEEEEE---ECCGGGCCCCSSCEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCC--HHHHHHHHHHhhhcCCceEEEE---EcChhhcCCCCCCEEEEEEc
Confidence 578999999999999999888755 89999999 569999999987663 223333 333322 2233489999999
Q ss_pred CcCCCCCC--hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
.++++..+ +..+++.+.+.|+|+
T Consensus 154 ~~l~~~~~~~~~~~l~~~~~~Lkpg 178 (241)
T 2ex4_A 154 WVIGHLTDQHLAEFLRRCKGSLRPN 178 (241)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred chhhhCCHHHHHHHHHHHHHhcCCC
Confidence 99998877 558999999999985
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=104.62 Aligned_cols=101 Identities=10% Similarity=-0.023 Sum_probs=77.2
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCC
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNP 140 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~f 140 (169)
.......++.+|||+|||+|.++..+++.+. +|+++|++ +.+++.+++++..+ ..+.+. .++... +..+.+|
T Consensus 86 l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s--~~~~~~a~~~~~~~-~~~~~~---~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 86 IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPV--KHMLEEAKRELAGM-PVGKFI---LASMETATLPPNTY 159 (254)
T ss_dssp HHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESC--HHHHHHHHHHTTTS-SEEEEE---ESCGGGCCCCSSCE
T ss_pred HHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCC--HHHHHHHHHHhccC-CceEEE---EccHHHCCCCCCCe
Confidence 3333444678999999999999999888755 79999999 56999999887654 223333 333322 2334589
Q ss_pred cEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 141 NIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
|+|+++.++++. .+...+++.+.+.|+|+
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 190 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPN 190 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999988 45889999999999985
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.9e-14 Score=113.64 Aligned_cols=105 Identities=14% Similarity=0.123 Sum_probs=80.9
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
++++.+......+.+|||+|||+|.+++.+++.+ .+|+++|++ +.+++.+++|+..+++..++ .+++.... .
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s--~~~l~~a~~~~~~~~~~~~~---~~~d~~~~-~ 258 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVS--APAVEASRATLAANGVEGEV---FASNVFSE-V 258 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESB--HHHHHHHHHHHHHTTCCCEE---EECSTTTT-C
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHhCCCCEE---EEcccccc-c
Confidence 3444443323346799999999999999999987 489999999 56999999999999887554 34444332 3
Q ss_pred CCCCcEEEEcCcCCC-----CCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYD-----ASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~-----~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++.++++ ......+++.+.+.|+|+
T Consensus 259 ~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkpg 296 (343)
T 2pjd_A 259 KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSG 296 (343)
T ss_dssp CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEE
T ss_pred cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCC
Confidence 568999999988774 345678999999999985
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.9e-13 Score=105.98 Aligned_cols=102 Identities=15% Similarity=0.024 Sum_probs=77.6
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
.+.+++.... .++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.. .+.+... +......
T Consensus 39 ~~~~~l~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~----~~~~~~~---d~~~~~~ 107 (263)
T 3pfg_A 39 DLAALVRRHS--PKAASLLDVACGTGMHLRHLADSFGTVEGLELS--ADMLAIARRRNP----DAVLHHG---DMRDFSL 107 (263)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESC--HHHHHHHHHHCT----TSEEEEC---CTTTCCC
T ss_pred HHHHHHHhhC--CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECC--HHHHHHHHhhCC----CCEEEEC---ChHHCCc
Confidence 4445554443 256799999999999999999999999999999 569999988754 3344333 3322223
Q ss_pred CCCCcEEEEcC-cCCCCC---ChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGAD-VFYDAS---GKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd-~iy~~~---~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++. ++++.. ....+++.+.+.|+|+
T Consensus 108 ~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 144 (263)
T 3pfg_A 108 GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPD 144 (263)
T ss_dssp SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEE
T ss_pred cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 56999999997 998874 6678899999999985
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=111.58 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=78.8
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHh-----C----CcceEEEEEcCCCCc--
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-----K----LNCRVMGLTWGFLDA-- 133 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n-----~----~~~~~~~l~~~~~~~-- 133 (169)
..++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+ + .++++...++.+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~ 158 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDML--DNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE 158 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECC--HHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc
Confidence 347789999999999999998875 4499999999 57999999998765 3 234433333332211
Q ss_pred --CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 --SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 --~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+.+||+|+++.++++..+...+++.+.+.|+|+
T Consensus 159 ~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg 196 (383)
T 4fsd_A 159 PEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDG 196 (383)
T ss_dssp SCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred cCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCC
Confidence 344569999999999999999999999999999985
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-13 Score=103.79 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-C-CCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-S-IFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~-~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++ ....+...+..+... . ....+||+|+++.
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGD--RTLVDAARAA-----GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESC--HHHHHHHHHT-----CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCC--HHHHHHHHHh-----cccccchhhHHhhcccccccCCCccEEEECc
Confidence 56899999999999999999999999999999 5699998877 223333333333211 1 2234699999999
Q ss_pred cCCCCCChHHHHHHHHHhccCC
Q 030935 148 VFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++ ..+...+++.+.+.|+|+
T Consensus 125 ~l~-~~~~~~~l~~~~~~L~pg 145 (227)
T 3e8s_A 125 ALL-HQDIIELLSAMRTLLVPG 145 (227)
T ss_dssp CCC-SSCCHHHHHHHHHTEEEE
T ss_pred hhh-hhhHHHHHHHHHHHhCCC
Confidence 999 889999999999999985
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-14 Score=108.80 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE-cC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG-AD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~-sd 147 (169)
++.+|||+|||+|..+..+++.+. +|+++|++ +.|++.++++.+.++.++.+...++.+...++.+.+||+|++ .-
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECN--DGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECC--HHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCC--HHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 567999999999999999988766 89999999 579999999988776555444333333222344568999998 33
Q ss_pred cCC----CCCChHHHHHHHHHhccCC
Q 030935 148 VFY----DASGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy----~~~~~~~l~~~l~~~L~p~ 169 (169)
.+. +....+.+++.+++.|||+
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~Lkpg 163 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPG 163 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCC
Confidence 321 2223446799999999985
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=104.68 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=65.1
Q ss_pred HHHHHHHHHhccCC--CCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEc
Q 030935 55 SVILAEYVWQQRYR--FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTW 128 (169)
Q Consensus 55 ~~~La~~l~~~~~~--~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~ 128 (169)
...+...+...... .++.+|||+|||+|.+++.+++. +++|+++|++ +.+++.+++|++.+++. +++...+.
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~ 125 (254)
T 2h00_A 48 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVD--DMCFNYAKKNVEQNNLSDLIKVVKVPQ 125 (254)
T ss_dssp HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHHHHcCCCccEEEEEcch
Confidence 44444444433221 25679999999999999888875 6799999999 57999999999998876 33333332
Q ss_pred CC-CCcCCC---CCCCcEEEEcCcCCCC
Q 030935 129 GF-LDASIF---DLNPNIILGADVFYDA 152 (169)
Q Consensus 129 ~~-~~~~~~---~~~fDlIi~sd~iy~~ 152 (169)
.+ ...... +.+||+|+++.+.+..
T Consensus 126 ~~~~~~~~~~~~~~~fD~i~~npp~~~~ 153 (254)
T 2h00_A 126 KTLLMDALKEESEIIYDFCMCNPPFFAN 153 (254)
T ss_dssp TCSSTTTSTTCCSCCBSEEEECCCCC--
T ss_pred hhhhhhhhhcccCCcccEEEECCCCccC
Confidence 22 122222 2489999998776643
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-14 Score=112.66 Aligned_cols=101 Identities=15% Similarity=0.067 Sum_probs=73.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-------------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN------------------------- 120 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~------------------------- 120 (169)
...++.+|||||||+|+.++.+++.++ +|+++|++ +.|++.++++++.+...
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s--~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFT--DRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE 129 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESC--HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeecccc--HHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence 345788999999999999888888887 79999999 56999999887654210
Q ss_pred ---ceEEEEEcCCCCc--C---CCCCCCcEEEEcCcCCCC----CChHHHHHHHHHhccCC
Q 030935 121 ---CRVMGLTWGFLDA--S---IFDLNPNIILGADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ---~~~~~l~~~~~~~--~---~~~~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
..+..+..++... + ....+||+|+++-++++. .++..+++.+.++||||
T Consensus 130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPG 190 (263)
T 2a14_A 130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 190 (263)
T ss_dssp HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred HHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCC
Confidence 0122123333332 1 123589999999998763 45568899999999996
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.6e-14 Score=110.89 Aligned_cols=99 Identities=17% Similarity=0.093 Sum_probs=72.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-------------------------
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN------------------------- 120 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~------------------------- 120 (169)
.+++++|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++++..++..
T Consensus 44 ~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis--~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (292)
T 3g07_A 44 WFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDID--SRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR 121 (292)
T ss_dssp GTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESC--HHHHHHHHHTC-------------------------------
T ss_pred hcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence 357889999999999999999987 5699999999 56999999987654311
Q ss_pred --------------------------------ceEEEEEcCCCCcC------CCCCCCcEEEEcCcCCCC------CChH
Q 030935 121 --------------------------------CRVMGLTWGFLDAS------IFDLNPNIILGADVFYDA------SGKI 156 (169)
Q Consensus 121 --------------------------------~~~~~l~~~~~~~~------~~~~~fDlIi~sd~iy~~------~~~~ 156 (169)
.++ .+..++.... ....+||+|+|..++.+. ....
T Consensus 122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v-~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~ 200 (292)
T 3g07_A 122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNV-VFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLK 200 (292)
T ss_dssp --------------------CCSSTTCCSSTTTTE-EEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred ccccccchhhhccCccccccccccccccccccccc-eEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHH
Confidence 111 1233333221 235699999999998544 3788
Q ss_pred HHHHHHHHhccCC
Q 030935 157 CAFEILICSLFPI 169 (169)
Q Consensus 157 ~l~~~l~~~L~p~ 169 (169)
.+++.+.+.|+||
T Consensus 201 ~~l~~~~~~LkpG 213 (292)
T 3g07_A 201 RMFRRIYRHLRPG 213 (292)
T ss_dssp HHHHHHHHHEEEE
T ss_pred HHHHHHHHHhCCC
Confidence 8999999999985
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=105.54 Aligned_cols=95 Identities=20% Similarity=0.139 Sum_probs=72.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcC-CCCCCCcEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDAS-IFDLNPNIIL 144 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~-~~~~~fDlIi 144 (169)
.++.+|||+|||+|.+++.++.. +.+|+++|++ +.+++.+++|++.+++. +++...+..+.... ....+||+|+
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~ 156 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDAT--RKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV 156 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence 36789999999999999999986 4599999999 56999999999999885 33333322221111 1236899999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+ ..++.+++.+.+.|+|+
T Consensus 157 s~a~----~~~~~ll~~~~~~Lkpg 177 (249)
T 3g89_A 157 ARAV----APLCVLSELLLPFLEVG 177 (249)
T ss_dssp EESS----CCHHHHHHHHGGGEEEE
T ss_pred ECCc----CCHHHHHHHHHHHcCCC
Confidence 9643 56899999999999985
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-13 Score=101.74 Aligned_cols=102 Identities=17% Similarity=0.067 Sum_probs=79.3
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
.++.......++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++..++. +..++......
T Consensus 83 ~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~ 159 (255)
T 3mb5_A 83 ALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIR--EDFAKLAWENIKWAGFDDRVT-IKLKDIYEGIE 159 (255)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHHHHHHHHHHHTCTTTEE-EECSCGGGCCC
T ss_pred HHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecC--HHHHHHHHHHHHHcCCCCceE-EEECchhhccC
Confidence 34444445567889999999999999999987 5699999999 579999999999988764332 44455544455
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|++ +......+++.+.+.|+|+
T Consensus 160 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~g 187 (255)
T 3mb5_A 160 EENVDHVIL-----DLPQPERVVEHAAKALKPG 187 (255)
T ss_dssp CCSEEEEEE-----CSSCGGGGHHHHHHHEEEE
T ss_pred CCCcCEEEE-----CCCCHHHHHHHHHHHcCCC
Confidence 568999998 3456678899999999985
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=101.26 Aligned_cols=91 Identities=15% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|+..+++. +.+. .++........+||+|++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~D~i~~~ 139 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSL--GKRVRFLRQVQHELKLENIEPV---QSRVEEFPSEPPFDGVISR 139 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHHHTTCSSEEEE---ECCTTTSCCCSCEEEEECS
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCeEEE---ecchhhCCccCCcCEEEEe
Confidence 5789999999999999999986 5699999999 57999999999988775 3433 3333322234589999975
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+ ..+..+++.+.+.|+|+
T Consensus 140 ~~----~~~~~~l~~~~~~L~~g 158 (207)
T 1jsx_A 140 AF----ASLNDMVSWCHHLPGEQ 158 (207)
T ss_dssp CS----SSHHHHHHHHTTSEEEE
T ss_pred cc----CCHHHHHHHHHHhcCCC
Confidence 43 56889999999999985
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3.4e-13 Score=106.27 Aligned_cols=93 Identities=16% Similarity=-0.051 Sum_probs=74.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|.+++.+++.++ +|+++|++ +.+++.+++|++.|++...+. +..++........+||+|++..+
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s--~~~~~~a~~n~~~n~~~~~v~-~~~~D~~~~~~~~~fD~Vi~~~p 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKD--PYTFKFLVENIHLNKVEDRMS-AYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCC--HHHHHHHHHHHHHTTCTTTEE-EECSCTTTCCCCSCEEEEEECCC
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECC--HHHHHHHHHHHHHcCCCceEE-EEECCHHHhcccCCccEEEECCc
Confidence 578999999999999999999988 59999999 679999999999999874332 44455544334568999998533
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.....+++.+.+.|+|+
T Consensus 202 ----~~~~~~l~~~~~~Lkpg 218 (278)
T 2frn_A 202 ----VRTHEFIPKALSIAKDG 218 (278)
T ss_dssp ----SSGGGGHHHHHHHEEEE
T ss_pred ----hhHHHHHHHHHHHCCCC
Confidence 34467888888999885
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=106.34 Aligned_cols=98 Identities=16% Similarity=0.055 Sum_probs=77.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC-CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI-FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~-~~~~fDlIi~ 145 (169)
.++.+|||+|||+|..+..+++.+. +|+++|++ +.+++.+++++..++...++. +..++... +. .+.+||+|++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~fD~v~~ 139 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIA--EVSINDARVRARNMKRRFKVF-FRAQDSYGRHMDLGKEFDVISS 139 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESC--HHHHHHHHHHHHTSCCSSEEE-EEESCTTTSCCCCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhcCCCccEE-EEECCccccccCCCCCcCEEEE
Confidence 3678999999999999998888887 99999999 569999999998776643332 33333322 22 3458999999
Q ss_pred cCcCCC----CCChHHHHHHHHHhccCC
Q 030935 146 ADVFYD----ASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~----~~~~~~l~~~l~~~L~p~ 169 (169)
..++++ ..+...+++.+.+.|+|+
T Consensus 140 ~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 167 (298)
T 1ri5_A 140 QFSFHYAFSTSESLDIAQRNIARHLRPG 167 (298)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred CchhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 999976 466788999999999985
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=103.66 Aligned_cols=113 Identities=12% Similarity=-0.086 Sum_probs=80.6
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
.|..+......+... ..++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.... ++.+...+..+
T Consensus 39 ~~~~~~~~~~~~~~~--~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s--~~~~~~a~~~~~~~--~~~~~~~d~~~ 112 (245)
T 3ggd_A 39 VERAVVVDLPRFELL--FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVS--KSALEIAAKENTAA--NISYRLLDGLV 112 (245)
T ss_dssp GGGTHHHHHHHHTTT--SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESC--HHHHHHHHHHSCCT--TEEEEECCTTC
T ss_pred hHHHHHHHHHHHhhc--cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECC--HHHHHHHHHhCccc--CceEEECcccc
Confidence 344444334444333 3467899999999999999999999999999999 56999999877322 33333332222
Q ss_pred CCcC-CC--CCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 131 LDAS-IF--DLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~-~~--~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.... .. ...||+|+++.++++.. +...+++.+.+.|+|+
T Consensus 113 ~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 156 (245)
T 3ggd_A 113 PEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQ 156 (245)
T ss_dssp HHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTT
T ss_pred cccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCC
Confidence 1100 00 12599999999999998 8899999999999996
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-14 Score=121.25 Aligned_cols=85 Identities=19% Similarity=0.144 Sum_probs=67.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|+++..+|++|++|+++|.+ +.+++.|+..+..++ +++++...+..+......+.+||+|+|..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~--~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQ--QENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 56799999999999999999999999999999 569999999888776 455544333333222234568999999999
Q ss_pred CCCCCChH
Q 030935 149 FYDASGKI 156 (169)
Q Consensus 149 iy~~~~~~ 156 (169)
++|..+..
T Consensus 144 ~ehv~~~~ 151 (569)
T 4azs_A 144 FHHIVHLH 151 (569)
T ss_dssp HHHHHHHH
T ss_pred hhcCCCHH
Confidence 99987654
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=102.03 Aligned_cols=93 Identities=12% Similarity=0.054 Sum_probs=73.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.. ++...+..+...+..+.+||+|+++++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~--~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAF--PEAAEQAKEKLD------HVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESS--HHHHHHHHTTSS------EEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCC--HHHHHHHHHhCC------cEEEcchhhcCCCCCCCccCEEEECCh
Confidence 467899999999999999999888899999999 568888876542 223233222222334468999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++..+...+++.+.+.|+|+
T Consensus 103 l~~~~~~~~~l~~~~~~L~~g 123 (230)
T 3cc8_A 103 LEHLFDPWAVIEKVKPYIKQN 123 (230)
T ss_dssp GGGSSCHHHHHHHTGGGEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999985
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.8e-13 Score=102.46 Aligned_cols=95 Identities=15% Similarity=0.081 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC---CCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF---DLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~---~~~fDlI 143 (169)
.++++|||+|||+|..++.+++ .+.+|+++|++ +.+++.+++|++.+++..++. +..++...... +.+||+|
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~fD~V 146 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERN--ETMIQYAKQNLATYHFENQVR-IIEGNALEQFENVNDKVYDMI 146 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECC--HHHHHHHHHHHHHTTCTTTEE-EEESCGGGCHHHHTTSCEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEECCHHHHHHhhccCCccEE
Confidence 3678999999999999999998 45699999999 579999999999888753332 33444433222 5689999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++.. ....+..+++.+.+.|+|+
T Consensus 147 ~~~~---~~~~~~~~l~~~~~~Lkpg 169 (232)
T 3ntv_A 147 FIDA---AKAQSKKFFEIYTPLLKHQ 169 (232)
T ss_dssp EEET---TSSSHHHHHHHHGGGEEEE
T ss_pred EEcC---cHHHHHHHHHHHHHhcCCC
Confidence 9642 4667889999999999985
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-13 Score=101.67 Aligned_cols=104 Identities=16% Similarity=0.034 Sum_probs=79.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+.+++.+... ++.+|||+|||+|..+..+++. .+|+++|++ +.+++.++++...++..+.+...+..+ ...+
T Consensus 23 ~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~d~~~---~~~~ 94 (243)
T 3d2l_A 23 WVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLS--EEMLEIAQEKAMETNRHVDFWVQDMRE---LELP 94 (243)
T ss_dssp HHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESC--HHHHHHHHHHHHHTTCCCEEEECCGGG---CCCS
T ss_pred HHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECC--HHHHHHHHHhhhhcCCceEEEEcChhh---cCCC
Confidence 4445555432 4689999999999999999988 899999999 579999999998777555544433332 2233
Q ss_pred CCCcEEEEcC-cCCCC---CChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGAD-VFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd-~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|++.. ++++. .....+++.+.+.|+|+
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 130 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDG 130 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCC
Confidence 6899999974 88776 55677899999999985
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-12 Score=103.62 Aligned_cols=114 Identities=17% Similarity=0.162 Sum_probs=81.3
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
-|.+..+.+++.......++.+|||+|||+|.+++.+++. +++|+++|++ +.+++.+++|++.+++..++. +..++
T Consensus 105 r~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis--~~al~~A~~n~~~~~l~~~v~-~~~~D 181 (284)
T 1nv8_A 105 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS--SKAVEIARKNAERHGVSDRFF-VRKGE 181 (284)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESC--HHHHHHHHHHHHHTTCTTSEE-EEESS
T ss_pred ChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCceE-EEECc
Confidence 3567777777765433235679999999999999999998 6799999999 579999999999998863332 33344
Q ss_pred CCcCCCCCCC---cEEEEcCcCCC-----------C--------CChHHHHHHHH-HhccCC
Q 030935 131 LDASIFDLNP---NIILGADVFYD-----------A--------SGKICAFEILI-CSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~f---DlIi~sd~iy~-----------~--------~~~~~l~~~l~-~~L~p~ 169 (169)
..... +.+| |+|+++.+... . .+-..+++.+. +.|+|+
T Consensus 182 ~~~~~-~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg 242 (284)
T 1nv8_A 182 FLEPF-KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 242 (284)
T ss_dssp TTGGG-GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred chhhc-ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence 43322 2478 99999733221 1 11126788888 988885
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.8e-12 Score=102.03 Aligned_cols=96 Identities=20% Similarity=0.157 Sum_probs=75.3
Q ss_pred cCCCCCCeEEEECCCCC-HHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 66 RYRFSGANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtG-l~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
....++.+|||+|||+| +.++.+++ .|++|+++|++ +++++.|+++++..++ .++. +..++... ..+.+||+|
T Consensus 118 a~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis--~~~l~~Ar~~~~~~gl-~~v~-~v~gDa~~-l~d~~FDvV 192 (298)
T 3fpf_A 118 GRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIE--PDIAELSRKVIEGLGV-DGVN-VITGDETV-IDGLEFDVL 192 (298)
T ss_dssp TTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESS--HHHHHHHHHHHHHHTC-CSEE-EEESCGGG-GGGCCCSEE
T ss_pred cCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECC--HHHHHHHHHHHHhcCC-CCeE-EEECchhh-CCCCCcCEE
Confidence 44567899999999987 55577776 58899999999 6799999999998887 3333 44455433 235699999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+-. ..+.+.+++.+.+.|+||
T Consensus 193 ~~~a~---~~d~~~~l~el~r~LkPG 215 (298)
T 3fpf_A 193 MVAAL---AEPKRRVFRNIHRYVDTE 215 (298)
T ss_dssp EECTT---CSCHHHHHHHHHHHCCTT
T ss_pred EECCC---ccCHHHHHHHHHHHcCCC
Confidence 98654 578889999999999997
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.7e-13 Score=102.26 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=80.7
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEE
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLT 127 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~ 127 (169)
-|....+..++.......++.+|||+|||+|..++.+++. +++|+++|++ +++++.+++|++.+++. .++. +.
T Consensus 38 ~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~g~~~~~i~-~~ 114 (221)
T 3dr5_A 38 DEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPE--SEHQRQAKALFREAGYSPSRVR-FL 114 (221)
T ss_dssp CHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSC--HHHHHHHHHHHHHTTCCGGGEE-EE
T ss_pred CHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCcCcEE-EE
Confidence 3444444455544433333459999999999999999885 5699999999 57999999999998876 3433 44
Q ss_pred cCCCCc---CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 128 WGFLDA---SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~---~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++..+ ...+.+||+|++.- ....+..+++.+.+.|+||
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpG 156 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQV---SPMDLKALVDAAWPLLRRG 156 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEE
T ss_pred EcCHHHHHHHhcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCC
Confidence 444322 22246899999743 3466788999999999985
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=2.4e-13 Score=103.23 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=70.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC---cCCC----CCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD---ASIF----DLN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~---~~~~----~~~ 139 (169)
++++|||+|||+|..++.+++. +++|+++|++ +.+++.+++|++.+++..++. +..++.. .... ..+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~l~~~~~~~~~~~ 134 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEIN--PDCAAITQQMLNFAGLQDKVT-ILNGASQDLIPQLKKKYDVDT 134 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEE-EEESCHHHHGGGTTTTSCCCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCC--hHHHHHHHHHHHHcCCCCceE-EEECCHHHHHHHHHHhcCCCc
Confidence 5689999999999999999984 5699999999 579999999999998864333 3334321 1111 158
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++.....+......+++.+ +.|+|+
T Consensus 135 fD~V~~d~~~~~~~~~~~~~~~~-~~Lkpg 163 (221)
T 3u81_A 135 LDMVFLDHWKDRYLPDTLLLEKC-GLLRKG 163 (221)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHT-TCCCTT
T ss_pred eEEEEEcCCcccchHHHHHHHhc-cccCCC
Confidence 99999865454433334556666 899986
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-12 Score=96.96 Aligned_cols=101 Identities=15% Similarity=0.001 Sum_probs=76.7
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-CCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-FDLN 139 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-~~~~ 139 (169)
++.......++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|.+.+++..++. +..++..... .+.+
T Consensus 82 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAV--EEFYKTAQKNLKKFNLGKNVK-FFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC--HHHHHHHHHHHHHTTCCTTEE-EECSCTTTSCCCTTC
T ss_pred HHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecC--HHHHHHHHHHHHHcCCCCcEE-EEEcChhhcccCCCc
Confidence 33333344578899999999999999999887799999999 569999999998887643332 3344444433 3458
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++. ..+...+++.+.+.|+|+
T Consensus 159 ~D~v~~~-----~~~~~~~l~~~~~~L~~g 183 (248)
T 2yvl_A 159 FHAAFVD-----VREPWHYLEKVHKSLMEG 183 (248)
T ss_dssp BSEEEEC-----SSCGGGGHHHHHHHBCTT
T ss_pred ccEEEEC-----CcCHHHHHHHHHHHcCCC
Confidence 9999983 346678899999999986
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.41 E-value=3.3e-13 Score=103.76 Aligned_cols=91 Identities=13% Similarity=0.133 Sum_probs=71.7
Q ss_pred CCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc-CC---CCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA-SI---FDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~-~~---~~~~fDl 142 (169)
++.+|||+|||+|.+++.+++ .+.+|+++|++ +.+++.+++|++.+++. +++. .++... .. ...+||+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~~~~fD~ 144 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSL--NKRITFLEKLSEALQLENTTFC---HDRAETFGQRKDVRESYDI 144 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHTCSSEEEE---ESCHHHHTTCTTTTTCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCEEEE---eccHHHhcccccccCCccE
Confidence 678999999999999999985 35699999999 57999999999988874 3333 333222 11 1458999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|++.. ...++.+++.+.+.|+|+
T Consensus 145 V~~~~----~~~~~~~l~~~~~~Lkpg 167 (240)
T 1xdz_A 145 VTARA----VARLSVLSELCLPLVKKN 167 (240)
T ss_dssp EEEEC----CSCHHHHHHHHGGGEEEE
T ss_pred EEEec----cCCHHHHHHHHHHhcCCC
Confidence 99876 367899999999999985
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=97.49 Aligned_cols=89 Identities=15% Similarity=-0.050 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|..+..+ +. +|+++|++ +.+++.++++. . .+.+...+..+ .+..+.+||+|++..+
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s--~~~~~~a~~~~--~--~~~~~~~d~~~--~~~~~~~fD~v~~~~~ 104 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPS--EAMLAVGRRRA--P--EATWVRAWGEA--LPFPGESFDVVLLFTT 104 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCC--HHHHHHHHHHC--T--TSEEECCCTTS--CCSCSSCEEEEEEESC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCC--HHHHHHHHHhC--C--CcEEEEccccc--CCCCCCcEEEEEEcCh
Confidence 7789999999999998877 77 99999999 56999988876 2 23333222222 1233458999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++..+...+++.+.+.|+|+
T Consensus 105 l~~~~~~~~~l~~~~~~L~pg 125 (211)
T 2gs9_A 105 LEFVEDVERVLLEARRVLRPG 125 (211)
T ss_dssp TTTCSCHHHHHHHHHHHEEEE
T ss_pred hhhcCCHHHHHHHHHHHcCCC
Confidence 999999999999999999985
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.6e-13 Score=104.05 Aligned_cols=107 Identities=10% Similarity=-0.015 Sum_probs=75.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHh---CCc----------
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMN---KLN---------- 120 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n---~~~---------- 120 (169)
+.+.+.......++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|+..+ ++.
T Consensus 39 l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis--~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~ 116 (250)
T 1o9g_A 39 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVD--PAPLELAAKNLALLSPAGLTARELERREQS 116 (250)
T ss_dssp HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESC--HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECC--HHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence 3444443332335679999999999999999887 4589999999 57999999998766 432
Q ss_pred -----------------ce-------------EEEEEcCCCCcCC------CCCCCcEEEEcCcCCCCCC---------h
Q 030935 121 -----------------CR-------------VMGLTWGFLDASI------FDLNPNIILGADVFYDASG---------K 155 (169)
Q Consensus 121 -----------------~~-------------~~~l~~~~~~~~~------~~~~fDlIi~sd~iy~~~~---------~ 155 (169)
++ +.. ++..... ...+||+|+++.++..... +
T Consensus 117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~ 193 (250)
T 1o9g_A 117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRT---ADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPV 193 (250)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEE---CCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHH
T ss_pred hhcccccchhhhhhhhhhhhhccccccccccceee---cccccccccccccCCCCceEEEeCCCeeccccccccccccHH
Confidence 22 333 3333322 2348999999866544333 4
Q ss_pred HHHHHHHHHhccCC
Q 030935 156 ICAFEILICSLFPI 169 (169)
Q Consensus 156 ~~l~~~l~~~L~p~ 169 (169)
..+++.+.+.|+|+
T Consensus 194 ~~~l~~~~~~Lkpg 207 (250)
T 1o9g_A 194 AGLLRSLASALPAH 207 (250)
T ss_dssp HHHHHHHHHHSCTT
T ss_pred HHHHHHHHHhcCCC
Confidence 58999999999996
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=113.59 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
...+.+.+.......++++|||+|||+|.+++.+++.++ +|+++|++ + +++.++++++.+++..++. +..++...
T Consensus 143 t~~~~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s--~-~l~~A~~~~~~~gl~~~v~-~~~~d~~~ 218 (480)
T 3b3j_A 143 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAS--T-MAQHAEVLVKSNNLTDRIV-VIPGKVEE 218 (480)
T ss_dssp HHHHHHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECH--H-HHHHHHHHHHHTTCTTTEE-EEESCTTT
T ss_pred HHHHHHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcH--H-HHHHHHHHHHHcCCCCcEE-EEECchhh
Confidence 334445555555556788999999999999999999876 89999998 5 8899999999998753332 33344333
Q ss_pred CCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
...+.+||+|++..++|+. +.....+..+.+.|+|+
T Consensus 219 ~~~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkpg 256 (480)
T 3b3j_A 219 VSLPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPS 256 (480)
T ss_dssp CCCSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEE
T ss_pred CccCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCC
Confidence 2234589999997776754 33455666778888885
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.8e-13 Score=106.79 Aligned_cols=117 Identities=9% Similarity=-0.124 Sum_probs=76.2
Q ss_pred ecchHHHHHHHHHhcc-CCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-------c
Q 030935 51 VWPCSVILAEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-------C 121 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~-~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-------~ 121 (169)
-|-.+..+..++.... ...++.+|||||||+|.....+++. +++|+++|++ +.|++.|++.....+.. +
T Consensus 28 n~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S--~~~l~~A~~~~~~~~~~~~~~~~~~ 105 (302)
T 2vdw_A 28 NYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPD--ADAIARGNERYNKLNSGIKTKYYKF 105 (302)
T ss_dssp HHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHCC----CCCEE
T ss_pred HHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECC--HHHHHHHHHHHHhcccccccccccc
Confidence 3555555555543211 0124779999999999655444444 5699999999 57999999987765542 1
Q ss_pred eEEEEEc-CCC-----CcCCCCCCCcEEEEcCcCCC---CCChHHHHHHHHHhccCC
Q 030935 122 RVMGLTW-GFL-----DASIFDLNPNIILGADVFYD---ASGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~-~~~-----~~~~~~~~fDlIi~sd~iy~---~~~~~~l~~~l~~~L~p~ 169 (169)
++...+. ++. .....+.+||+|+|..++++ ......+++.++++|+||
T Consensus 106 ~f~~~d~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpG 162 (302)
T 2vdw_A 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASG 162 (302)
T ss_dssp EEEECCTTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEE
T ss_pred chhhhhcccchhhhhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCC
Confidence 1211111 111 11223458999999998864 356789999999999996
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-14 Score=108.70 Aligned_cols=100 Identities=14% Similarity=0.104 Sum_probs=76.4
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCC--------------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-------------------------- 119 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~-------------------------- 119 (169)
...++.+|||+|||+|..++.+++.+. +|+++|++ +.+++.+++++..++.
T Consensus 53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (265)
T 2i62_A 53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYT--DQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE 130 (265)
T ss_dssp SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESC--HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCC--HHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence 345778999999999999999999888 99999999 5699999988865431
Q ss_pred ----cc-eEEEEEcCCCCcCCCC---CCCcEEEEcCcCC----CCCChHHHHHHHHHhccCC
Q 030935 120 ----NC-RVMGLTWGFLDASIFD---LNPNIILGADVFY----DASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ----~~-~~~~l~~~~~~~~~~~---~~fDlIi~sd~iy----~~~~~~~l~~~l~~~L~p~ 169 (169)
.+ .+...+..... ...+ .+||+|+++.+++ +...+..+++.+.+.|+|+
T Consensus 131 ~l~~~v~~~~~~d~~~~~-~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 191 (265)
T 2i62_A 131 KLRRAIKQVLKCDVTQSQ-PLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPG 191 (265)
T ss_dssp HHHHHEEEEEECCTTSSS-TTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred HhhhhheeEEEeeeccCC-CCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCC
Confidence 02 33323322211 1123 6899999999999 6667889999999999985
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.40 E-value=6e-13 Score=103.23 Aligned_cols=101 Identities=21% Similarity=0.136 Sum_probs=75.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+.+++..... ++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++... .+...+..+ .+..+
T Consensus 44 ~~~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~l~~a~~~~~~-----~~~~~d~~~--~~~~~ 112 (260)
T 2avn_A 44 IGSFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPS--KEMLEVAREKGVK-----NVVEAKAED--LPFPS 112 (260)
T ss_dssp HHHHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTCEEEEEESC--HHHHHHHHHHTCS-----CEEECCTTS--CCSCT
T ss_pred HHHHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCC--HHHHHHHHhhcCC-----CEEECcHHH--CCCCC
Confidence 4455544433 67899999999999999999999999999999 5699999887541 123232222 12335
Q ss_pred CCCcEEEEcCcCC-CCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFY-DASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy-~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|++..+++ ...+...+++.+.+.|+|+
T Consensus 113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~Lkpg 145 (260)
T 2avn_A 113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPD 145 (260)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEE
T ss_pred CCEEEEEEcchhhhccccHHHHHHHHHHHcCCC
Confidence 6899999988655 4477999999999999985
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=108.11 Aligned_cols=95 Identities=14% Similarity=0.029 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDlIi~sd 147 (169)
+|++|||+|||||..++.+++.|++|+++|++ +.+++.+++|++.|++..++. .++..... ....||+|++..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis--~~al~~a~~n~~~ng~~~~~~---~~D~~~~l~~~~~~fD~Ii~dp 288 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKD--LEALGVLDQAALRLGLRVDIR---HGEALPTLRGLEGPFHHVLLDP 288 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCCCEEE---ESCHHHHHHTCCCCEEEEEECC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECC--HHHHHHHHHHHHHhCCCCcEE---EccHHHHHHHhcCCCCEEEECC
Confidence 48899999999999999999999999999999 679999999999999875544 34432211 133499999854
Q ss_pred cCCCC---------CChHHHHHHHHHhccCC
Q 030935 148 VFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
+.|.. ..+..+++.+.+.|+|+
T Consensus 289 P~f~~~~~~~~~~~~~~~~ll~~a~~~LkpG 319 (393)
T 4dmg_A 289 PTLVKRPEELPAMKRHLVDLVREALRLLAEE 319 (393)
T ss_dssp CCCCSSGGGHHHHHHHHHHHHHHHHHTEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44332 23467888888888885
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-13 Score=101.01 Aligned_cols=94 Identities=20% Similarity=0.114 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC------CCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF------DLNP 140 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~------~~~f 140 (169)
++++|||+|||+|..++.+++. +++|+++|++ +.+++.+++|++.+++..++. +..++...... ..+|
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~f 134 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEAS--EKHADIARSNIERANLNDRVE-VRTGLALDSLQQIENEKYEPF 134 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEESCHHHHHHHHHHTTCCCC
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEEcCHHHHHHHHHhcCCCCc
Confidence 5789999999999999999987 6799999999 579999999999888754333 33343322111 1479
Q ss_pred cEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 141 NIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+|++... ......+++.+.+.|+|+
T Consensus 135 D~v~~d~~---~~~~~~~l~~~~~~L~pg 160 (223)
T 3duw_A 135 DFIFIDAD---KQNNPAYFEWALKLSRPG 160 (223)
T ss_dssp SEEEECSC---GGGHHHHHHHHHHTCCTT
T ss_pred CEEEEcCC---cHHHHHHHHHHHHhcCCC
Confidence 99997543 456788999999999996
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=104.91 Aligned_cols=95 Identities=18% Similarity=0.138 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC----CcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK----LNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~----~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||||||+|..+..+++.|.+|+++|++ +.+++.+++++..++ ..+.+...+.. ....+.+||+|++
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~---~~~~~~~fD~v~~ 156 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELS--TSVLAAFRKRLAEAPADVRDRCTLVQGDMS---AFALDKRFGTVVI 156 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTCCEEEEESC--HHHHHHHHHHHHTSCHHHHTTEEEEECBTT---BCCCSCCEEEEEE
T ss_pred CCCcEEEEeccCCHHHHHHHHcCCeEEEEECC--HHHHHHHHHHHhhcccccccceEEEeCchh---cCCcCCCcCEEEE
Confidence 34599999999999999999999999999999 579999999998766 23444433333 3223569999997
Q ss_pred c-CcCCCCC--ChHHHHHHHHHhccCC
Q 030935 146 A-DVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 146 s-d~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+ .++++.. ....+++.+.+.|+|+
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~L~pg 183 (299)
T 3g2m_A 157 SSGSINELDEADRRGLYASVREHLEPG 183 (299)
T ss_dssp CHHHHTTSCHHHHHHHHHHHHHHEEEE
T ss_pred CCcccccCCHHHHHHHHHHHHHHcCCC
Confidence 6 5555554 4689999999999985
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=96.16 Aligned_cols=108 Identities=16% Similarity=0.023 Sum_probs=77.4
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
.|......+ ++.+.....++.+|||+|||+|..+..+++.+ .+|+++|++ +.+++.+++++..++... + .+.
T Consensus 59 ~~~~~~~~~-~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~-v-~~~ 133 (215)
T 2yxe_A 59 TISAIHMVG-MMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERI--PELAEKAERTLRKLGYDN-V-IVI 133 (215)
T ss_dssp EECCHHHHH-HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHHHHTCTT-E-EEE
T ss_pred EeCcHHHHH-HHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCC-e-EEE
Confidence 344444433 44444445578899999999999999998875 699999999 569999999998877642 2 233
Q ss_pred cCCCCcCCC-CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 128 WGFLDASIF-DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~~-~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++...... ..+||+|+++.++++.. +.+.+.|+|+
T Consensus 134 ~~d~~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pg 170 (215)
T 2yxe_A 134 VGDGTLGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDG 170 (215)
T ss_dssp ESCGGGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEE
T ss_pred ECCcccCCCCCCCeeEEEECCchHHHH------HHHHHHcCCC
Confidence 344333332 45899999999988655 4777888874
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=98.43 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=76.8
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
|..... ..++.+.....++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++...++ .+.+. .++.
T Consensus 53 ~~~~~~-~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~~~-~v~~~---~~d~ 125 (231)
T 1vbf_A 53 TTALNL-GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEIN--EKMYNYASKLLSYYN-NIKLI---LGDG 125 (231)
T ss_dssp ECCHHH-HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTCS-SEEEE---ESCG
T ss_pred cCCHHH-HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCC--HHHHHHHHHHHhhcC-CeEEE---ECCc
Confidence 444433 4444444445578899999999999999999998999999999 579999999988766 44433 3333
Q ss_pred CcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 132 DASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.... ...+||+|++..++++.. +.+.+.|+|+
T Consensus 126 ~~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pg 158 (231)
T 1vbf_A 126 TLGYEEEKPYDRVVVWATAPTLL------CKPYEQLKEG 158 (231)
T ss_dssp GGCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEE
T ss_pred ccccccCCCccEEEECCcHHHHH------HHHHHHcCCC
Confidence 2222 245899999999988654 3577788874
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.9e-13 Score=100.63 Aligned_cols=87 Identities=17% Similarity=0.007 Sum_probs=68.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-CCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-DLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-~~~fDlIi~sd~ 148 (169)
++.+|||+|||+|..+..+++.+++|+++|++ +.+++.++++ ...+++...++.+. .+.. +.+||+|+++
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s--~~~~~~a~~~----~~~~~~~~~d~~~~-~~~~~~~~fD~v~~~-- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFS--PELLKLARAN----APHADVYEWNGKGE-LPAGLGAPFGLIVSR-- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESC--HHHHHHHHHH----CTTSEEEECCSCSS-CCTTCCCCEEEEEEE--
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHh----CCCceEEEcchhhc-cCCcCCCCEEEEEeC--
Confidence 67899999999999999999999999999999 5699999887 22344444444221 1233 5689999997
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+...+++.+.+.|+|+
T Consensus 119 ----~~~~~~l~~~~~~Lkpg 135 (226)
T 3m33_A 119 ----RGPTSVILRLPELAAPD 135 (226)
T ss_dssp ----SCCSGGGGGHHHHEEEE
T ss_pred ----CCHHHHHHHHHHHcCCC
Confidence 46778889999999985
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.39 E-value=7e-13 Score=105.27 Aligned_cols=98 Identities=13% Similarity=0.011 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCCCHHHHHHH--H-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAA--K-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a--~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
.++.+|||+|||+|..++.++ . .+.+|+++|++ +.+++.+++|+..++...++. +..++......+.+||+|++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~fD~v~~ 193 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYD--PEALDGATRLAAGHALAGQIT-LHRQDAWKLDTREGYDLLTS 193 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESC--HHHHHHHHHHHTTSTTGGGEE-EEECCGGGCCCCSCEEEEEC
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEECchhcCCccCCeEEEEE
Confidence 467899999999999999885 2 24599999999 579999999998887763332 23333333223379999999
Q ss_pred cCcCCCCCChHH---HHHHHHHhccCC
Q 030935 146 ADVFYDASGKIC---AFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~---l~~~l~~~L~p~ 169 (169)
+.++++..+.+. +++.+.+.|+||
T Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~Lkpg 220 (305)
T 3ocj_A 194 NGLNIYEPDDARVTELYRRFWQALKPG 220 (305)
T ss_dssp CSSGGGCCCHHHHHHHHHHHHHHEEEE
T ss_pred CChhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 999998877665 799999999985
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=103.78 Aligned_cols=97 Identities=11% Similarity=0.094 Sum_probs=69.6
Q ss_pred CCCeEEEECCCCCHHHHHHH----Hh--CCeE--EEEcCCCcHHHHHHHHHHHHHh-CCc-ceEEEEEcCCCCc------
Q 030935 70 SGANVVELGAGTSLPGLVAA----KV--GSNV--TLTDDSNRIEVLKNMRRVCEMN-KLN-CRVMGLTWGFLDA------ 133 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a----~~--ga~V--~~~D~~~~~~~l~~~~~n~~~n-~~~-~~~~~l~~~~~~~------ 133 (169)
++.+|||+|||+|.++..++ .. +.+| +++|.+ ++|++.+++++... ++. +++. ..-++...
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S--~~ml~~a~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ 128 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS--AEQIAKYKELVAKTSNLENVKFA-WHKETSSEYQSRML 128 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSC--HHHHHHHHHHHHTCSSCTTEEEE-EECSCHHHHHHHHH
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCC--HHHHHHHHHHHHhccCCCcceEE-EEecchhhhhhhhc
Confidence 45699999999997765332 22 3344 999999 67999999987643 332 2221 22222111
Q ss_pred -CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 -SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 -~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+.+||+|+++.++|+..+.+.+++.+.+.||||
T Consensus 129 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg 165 (292)
T 2aot_A 129 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN 165 (292)
T ss_dssp TTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred cccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCC
Confidence 123568999999999999999999999999999996
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-12 Score=100.26 Aligned_cols=99 Identities=13% Similarity=0.119 Sum_probs=74.4
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHh-CCc-ceEEEEEcCCCCcCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-KLN-CRVMGLTWGFLDASI 135 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~-~~~~~l~~~~~~~~~ 135 (169)
++.......++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+ +.. ++ +..++.....
T Consensus 101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~g~~~v~---~~~~d~~~~~ 175 (275)
T 1yb2_A 101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLKKAMDNLSEFYDIGNVR---TSRSDIADFI 175 (275)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHHHHHHHHHTTSCCTTEE---EECSCTTTCC
T ss_pred HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHhcCCCCcEE---EEECchhccC
Confidence 4444444557889999999999999999987 6799999999 56999999999887 643 33 3345544444
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||+|++ +......+++.+.+.|+|+
T Consensus 176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~Lkpg 204 (275)
T 1yb2_A 176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPG 204 (275)
T ss_dssp CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEE
T ss_pred cCCCccEEEE-----cCcCHHHHHHHHHHHcCCC
Confidence 4468999998 3456788999999999985
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=112.63 Aligned_cols=114 Identities=15% Similarity=0.039 Sum_probs=85.2
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHh------CCcce
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMN------KLNCR 122 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n------~~~~~ 122 (169)
-|-.....+++.......++.+|||||||+|.+++.+++.+ .+|+++|++ +.|++.++++++.. +.. +
T Consensus 703 PPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS--~emLe~AReRLa~~lnAkr~gl~-n 779 (950)
T 3htx_A 703 PPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDIS--PKGLARAAKMLHVKLNKEACNVK-S 779 (950)
T ss_dssp SCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESC--HHHHHHHHHHHHHHTTTTCSSCS-E
T ss_pred chHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECC--HHHHHHHHHHhhhccchhhcCCC-c
Confidence 34444555555554444478899999999999999999987 699999999 57999999877643 222 2
Q ss_pred EEEEEcCCCCc-CCCCCCCcEEEEcCcCCCCCChH--HHHHHHHHhccCC
Q 030935 123 VMGLTWGFLDA-SIFDLNPNIILGADVFYDASGKI--CAFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~~--~l~~~l~~~L~p~ 169 (169)
..+..++... .....+||+|++..++++..+.. .+++.+.+.|+||
T Consensus 780 -VefiqGDa~dLp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG 828 (950)
T 3htx_A 780 -ATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK 828 (950)
T ss_dssp -EEEEESCTTSCCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred -eEEEECchHhCCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC
Confidence 2344455433 23346899999999999988754 5899999999996
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=97.30 Aligned_cols=95 Identities=8% Similarity=-0.205 Sum_probs=70.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc---CCCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA---SIFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~---~~~~~~fDlI 143 (169)
.+.+|||||||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++. +.+ ..++... .+.+..||.|
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s--~~~l~~a~~~~~~~~~~nv~~---~~~d~~~l~~~~~~~~~d~v 112 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELF--KSVIVTAVQKVKDSEAQNVKL---LNIDADTLTDVFEPGEVKRV 112 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSC--HHHHHHHHHHHHHSCCSSEEE---ECCCGGGHHHHCCTTSCCEE
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEec--hHHHHHHHHHHHHcCCCCEEE---EeCCHHHHHhhcCcCCcCEE
Confidence 4679999999999999999987 5699999999 57999999999988764 333 3333322 1334589999
Q ss_pred EEcCcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
++.-...+.. ..+.+++.+.+.|+|+
T Consensus 113 ~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~Lkpg 146 (213)
T 2fca_A 113 YLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG 146 (213)
T ss_dssp EEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred EEECCCCCcCccccccccCcHHHHHHHHHHcCCC
Confidence 8753322221 1478999999999996
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=96.26 Aligned_cols=98 Identities=17% Similarity=0.045 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlI 143 (169)
.++.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+++..++. +..++.... ..+.+||+|
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~fD~v 97 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQ--DKAIANTTKKLTDLNLIDRVT-LIKDGHQNMDKYIDCPVKAV 97 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSC--HHHHHHHHHHHHHTTCGGGEE-EECSCGGGGGGTCCSCEEEE
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCeE-EEECCHHHHhhhccCCceEE
Confidence 36789999999999999999886 2 499999999 579999999999988743332 334443221 334689999
Q ss_pred EEcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
++..+++.. .....+++.+.+.|+|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 132 (197)
T 3eey_A 98 MFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG 132 (197)
T ss_dssp EEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE
T ss_pred EEcCCcccCcccccccCcccHHHHHHHHHHhCcCC
Confidence 987544221 13457899999999985
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.4e-13 Score=98.62 Aligned_cols=106 Identities=16% Similarity=0.045 Sum_probs=78.2
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
.+.+++.+.. .++.+|||+|||+|.++..+++.+. +|+++|++ +.+++.++++... ...+.+...+..+. +.
T Consensus 31 ~~~~~l~~~~--~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s--~~~~~~a~~~~~~-~~~i~~~~~d~~~~--~~ 103 (215)
T 2pxx_A 31 SFRALLEPEL--RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYS--SVVVAAMQACYAH-VPQLRWETMDVRKL--DF 103 (215)
T ss_dssp HHHHHHGGGC--CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESC--HHHHHHHHHHTTT-CTTCEEEECCTTSC--CS
T ss_pred HHHHHHHHhc--CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCC--HHHHHHHHHhccc-CCCcEEEEcchhcC--CC
Confidence 4566666543 3677999999999999999999887 89999999 5699999988763 12334333333222 33
Q ss_pred CCCCCcEEEEcCcCCCC---------------CChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDA---------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~---------------~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||+|+++.++.+. .....+++.+.+.|+|+
T Consensus 104 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 152 (215)
T 2pxx_A 104 PSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG 152 (215)
T ss_dssp CSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE
T ss_pred CCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC
Confidence 44689999998877533 25688999999999985
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=100.06 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=70.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.|++|++.|++..++. +..++....+.+. +||+|+.+
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~--~~al~~A~~N~~~~gl~~~i~-~~~~d~l~~l~~~~~~D~Ivia 91 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVV--EGPYQSAVKNVEAHGLKEKIQ-VRLANGLAAFEETDQVSVITIA 91 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTTCTTTEE-EEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCceEE-EEECchhhhcccCcCCCEEEEc
Confidence 567999999999999999999874 79999999 579999999999999865433 4455554444433 79988865
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..-- ..+..+++...+.|+|+
T Consensus 92 G~Gg--~~i~~Il~~~~~~L~~~ 112 (225)
T 3kr9_A 92 GMGG--RLIARILEEGLGKLANV 112 (225)
T ss_dssp EECH--HHHHHHHHHTGGGCTTC
T ss_pred CCCh--HHHHHHHHHHHHHhCCC
Confidence 4321 22566777777777663
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=102.46 Aligned_cols=93 Identities=16% Similarity=-0.032 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
+|.+|||+|||+|.+++.+|+.|+ +|+++|++ +.+++.+++|++.|++..++..+ .++.........||.|+...+
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~n--p~a~~~~~~N~~~N~v~~~v~~~-~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKD--PYTFKFLVENIHLNKVEDRMSAY-NMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCC--HHHHHHHHHHHHHTTCTTTEEEE-CSCTTTCCCCSCEEEEEECCC
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECC--HHHHHHHHHHHHHcCCCCcEEEE-eCcHHHhccccCCCEEEECCC
Confidence 688999999999999999999986 89999999 67999999999999997655433 344434344568999998766
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.. .++....+.|+||
T Consensus 202 ~~~~----~~l~~a~~~lk~g 218 (278)
T 3k6r_A 202 VRTH----EFIPKALSIAKDG 218 (278)
T ss_dssp SSGG----GGHHHHHHHEEEE
T ss_pred CcHH----HHHHHHHHHcCCC
Confidence 5543 4455555666653
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-12 Score=98.56 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=74.8
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCC
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLN 139 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~ 139 (169)
.......++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|++.+++..++. +..++......+.+
T Consensus 105 ~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~ 181 (277)
T 1o54_A 105 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR--EEFAKLAESNLTKWGLIERVT-IKVRDISEGFDEKD 181 (277)
T ss_dssp HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCC--HHHHHHHHHHHHHTTCGGGEE-EECCCGGGCCSCCS
T ss_pred HHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHHHHcCCCCCEE-EEECCHHHcccCCc
Confidence 33334556889999999999999999987 4599999999 579999999999888733322 33444433334458
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++. ......+++.+.+.|+|+
T Consensus 182 ~D~V~~~-----~~~~~~~l~~~~~~L~pg 206 (277)
T 1o54_A 182 VDALFLD-----VPDPWNYIDKCWEALKGG 206 (277)
T ss_dssp EEEEEEC-----CSCGGGTHHHHHHHEEEE
T ss_pred cCEEEEC-----CcCHHHHHHHHHHHcCCC
Confidence 9999983 355678899999999885
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=98.57 Aligned_cols=102 Identities=11% Similarity=-0.022 Sum_probs=75.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
.+.+++.... .++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.. .+++...+.. ....
T Consensus 29 ~~~~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s--~~~~~~a~~~~~----~~~~~~~d~~---~~~~ 97 (239)
T 3bxo_A 29 DIADLVRSRT--PEASSLLDVACGTGTHLEHFTKEFGDTAGLELS--EDMLTHARKRLP----DATLHQGDMR---DFRL 97 (239)
T ss_dssp HHHHHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESC--HHHHHHHHHHCT----TCEEEECCTT---TCCC
T ss_pred HHHHHHHHhc--CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCC--HHHHHHHHHhCC----CCEEEECCHH---Hccc
Confidence 4555555443 367899999999999999999988899999999 569999887642 2333333332 2222
Q ss_pred CCCCcEEEE-cCcCCCC---CChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILG-ADVFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~-sd~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+| .+++++. .....+++.+.+.|+|+
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg 134 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPG 134 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEE
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCC
Confidence 568999995 5588776 45678999999999985
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.1e-12 Score=93.99 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=68.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.+++|++.+++.+.+. .++... .+.+||+|+++
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~---~~d~~~--~~~~~D~v~~~ 119 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVD--KEAVDVLIENLGEFKGKFKVF---IGDVSE--FNSRVDIVIMN 119 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHTGGGTTSEEEE---ESCGGG--CCCCCSEEEEC
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHHHcCCCEEEE---ECchHH--cCCCCCEEEEc
Confidence 45788999999999999999999876 79999999 569999999999888744433 344322 13489999987
Q ss_pred CcCCCC--CChHHHHHHHHHhc
Q 030935 147 DVFYDA--SGKICAFEILICSL 166 (169)
Q Consensus 147 d~iy~~--~~~~~l~~~l~~~L 166 (169)
.+++.. .....+++.+.+.|
T Consensus 120 ~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 120 PPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp CCCSSSSTTTTHHHHHHHHHHC
T ss_pred CCCccccCCchHHHHHHHHHhc
Confidence 765544 23445666665544
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-12 Score=100.67 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=72.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCC-CCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIF-DLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~-~~~fDl 142 (169)
++++|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++..++. +..++... ... ..+||+
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~l~~~~~~~~fD~ 139 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEAD--AHHAQVARENLQLAGVDQRVT-LREGPALQSLESLGECPAFDL 139 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECC--HHHHHHHHHHHHHTTCTTTEE-EEESCHHHHHHTCCSCCCCSE
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEEcCHHHHHHhcCCCCCeEE
Confidence 5789999999999999999986 6699999999 579999999999888763332 33333221 111 248999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|++.- .......+++.+.+.|+||
T Consensus 140 V~~d~---~~~~~~~~l~~~~~~LkpG 163 (248)
T 3tfw_A 140 IFIDA---DKPNNPHYLRWALRYSRPG 163 (248)
T ss_dssp EEECS---CGGGHHHHHHHHHHTCCTT
T ss_pred EEECC---chHHHHHHHHHHHHhcCCC
Confidence 99743 3566788999999999996
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=99.40 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---C-----CCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---I-----FDL 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~-----~~~ 138 (169)
++++|||+|||+|..++.+++. +.+|+++|+++ .+++.+++|++.+++..++. +..++.... . ...
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~--~~~~~a~~~~~~~g~~~~i~-~~~gda~~~l~~l~~~~~~~~ 155 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKID-FREGPALPVLDEMIKDEKNHG 155 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEE-EEESCHHHHHHHHHHSGGGTT
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHcCCCCCeE-EEECCHHHHHHHHHhccCCCC
Confidence 5679999999999999999986 67999999996 59999999999888754433 333443221 1 146
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|++.. ....+..+++.+.+.|+||
T Consensus 156 ~fD~V~~d~---~~~~~~~~l~~~~~~LkpG 183 (247)
T 1sui_A 156 SYDFIFVDA---DKDNYLNYHKRLIDLVKVG 183 (247)
T ss_dssp CBSEEEECS---CSTTHHHHHHHHHHHBCTT
T ss_pred CEEEEEEcC---chHHHHHHHHHHHHhCCCC
Confidence 899999743 2467899999999999996
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=9.8e-13 Score=99.59 Aligned_cols=94 Identities=12% Similarity=0.078 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCC----CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFD----LN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~----~~ 139 (169)
++++|||+|||+|..++.+++. +.+|+++|++ +.+++.++++++.+++..++. +..++..+. ... .+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~~~~ 140 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVD--EKSTALAKEYWEKAGLSDKIG-LRLSPAKDTLAELIHAGQAWQ 140 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEESCHHHHHHHHHTTTCTTC
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCC--HHHHHHHHHHHHHCCCCCceE-EEeCCHHHHHHHhhhccCCCC
Confidence 5679999999999999999986 6799999999 579999999999888764333 333433221 111 68
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++.. ....+..+++.+.+.|+|+
T Consensus 141 fD~v~~~~---~~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 141 YDLIYIDA---DKANTDLYYEESLKLLREG 167 (225)
T ss_dssp EEEEEECS---CGGGHHHHHHHHHHHEEEE
T ss_pred ccEEEECC---CHHHHHHHHHHHHHhcCCC
Confidence 99999533 2456788999999999985
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=5.7e-12 Score=100.85 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=76.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.+...+.......++.+|||+|||+|.+++.+++.+. +|+++|++ +++++.+++|++.+++.. + .+..++...
T Consensus 62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s--~~~~~~a~~~~~~~g~~~-v-~~~~~d~~~ 137 (317)
T 1dl5_A 62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICEIAKRNVERLGIEN-V-IFVCGDGYY 137 (317)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHTTCCS-E-EEEESCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHHHHcCCCC-e-EEEECChhh
Confidence 4444555544555788999999999999999998755 49999999 579999999999887653 2 233344333
Q ss_pred CC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. ...+||+|++..++.+.. +.+.+.|+|+
T Consensus 138 ~~~~~~~fD~Iv~~~~~~~~~------~~~~~~Lkpg 168 (317)
T 1dl5_A 138 GVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEG 168 (317)
T ss_dssp CCGGGCCEEEEEECSBBSCCC------HHHHHHEEEE
T ss_pred ccccCCCeEEEEEcCCHHHHH------HHHHHhcCCC
Confidence 22 235899999999988765 5677888875
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=98.83 Aligned_cols=94 Identities=10% Similarity=-0.018 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.|++|++.|++..++. +..++......+. +||+|+.+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~--~~al~~A~~N~~~~gl~~~I~-~~~gD~l~~~~~~~~~D~Ivia 97 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVV--NGPYQSALKNVSEHGLTSKID-VRLANGLSAFEEADNIDTITIC 97 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESS--HHHHHHHHHHHHHTTCTTTEE-EEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEECchhhccccccccCEEEEe
Confidence 567999999999999999999874 79999999 579999999999999865443 4455554444443 79998754
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
-+-- ..+..+++.....|+|
T Consensus 98 GmGg--~lI~~IL~~~~~~l~~ 117 (230)
T 3lec_A 98 GMGG--RLIADILNNDIDKLQH 117 (230)
T ss_dssp EECH--HHHHHHHHHTGGGGTT
T ss_pred CCch--HHHHHHHHHHHHHhCc
Confidence 4432 2244555555555554
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-12 Score=97.14 Aligned_cols=94 Identities=11% Similarity=0.089 Sum_probs=73.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CC--CCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IF--DLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~--~~~fDlI 143 (169)
++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.++...++. +..++.... .. +.+||+|
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~fD~I 130 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERD--ERRYEEAHKHVKALGLESRIE-LLFGDALQLGEKLELYPLFDVL 130 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCC--HHHHHHHHHHHHHTTCTTTEE-EECSCGGGSHHHHTTSCCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEECCHHHHHHhcccCCCccEE
Confidence 5779999999999999999987 5799999999 579999999999888743332 334443321 11 4589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++.... .....+++.+.+.|+|+
T Consensus 131 ~~~~~~---~~~~~~l~~~~~~L~pg 153 (233)
T 2gpy_A 131 FIDAAK---GQYRRFFDMYSPMVRPG 153 (233)
T ss_dssp EEEGGG---SCHHHHHHHHGGGEEEE
T ss_pred EECCCH---HHHHHHHHHHHHHcCCC
Confidence 986553 47789999999999985
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-12 Score=93.04 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=71.0
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
.|.+..|.+++... ..++.+|||+|||+|.+++.+++.+ +|+++|++ +.+++. .+ ++++. .++.
T Consensus 7 ~~~~~~l~~~l~~~--~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s--~~~~~~------~~--~~~~~---~~d~ 70 (170)
T 3q87_B 7 GEDTYTLMDALERE--GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLN--IRALES------HR--GGNLV---RADL 70 (170)
T ss_dssp CHHHHHHHHHHHHH--TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESC--HHHHHT------CS--SSCEE---ECST
T ss_pred CccHHHHHHHHHhh--cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECC--HHHHhc------cc--CCeEE---ECCh
Confidence 45677788776442 1356799999999999999999999 99999999 568876 12 23333 3444
Q ss_pred CcCCCCCCCcEEEEcCcCCCCCCh---------HHHHHHHHHhccCC
Q 030935 132 DASIFDLNPNIILGADVFYDASGK---------ICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~~~~---------~~l~~~l~~~L~p~ 169 (169)
.....+.+||+|+++.++++.... ..+++.+.+.| |+
T Consensus 71 ~~~~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pg 116 (170)
T 3q87_B 71 LCSINQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TV 116 (170)
T ss_dssp TTTBCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CS
T ss_pred hhhcccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CC
Confidence 344444699999998777654433 55667776666 53
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8e-12 Score=96.18 Aligned_cols=99 Identities=16% Similarity=0.078 Sum_probs=74.8
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHh-CCc-ceEEEEEcCCCCcC-
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-KLN-CRVMGLTWGFLDAS- 134 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n-~~~-~~~~~l~~~~~~~~- 134 (169)
++.......++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+ +.. +. +..++....
T Consensus 87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~--~~~~~~a~~~~~~~~g~~~v~---~~~~d~~~~~ 161 (258)
T 2pwy_A 87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEAR--PHHLAQAERNVRAFWQVENVR---FHLGKLEEAE 161 (258)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHHHHCCCCCEE---EEESCGGGCC
T ss_pred HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHhcCCCCEE---EEECchhhcC
Confidence 4444444557889999999999999999987 5699999999 56999999999887 632 33 333443333
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|++. ......+++.+.+.|+|+
T Consensus 162 ~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~g 191 (258)
T 2pwy_A 162 LEEAAYDGVALD-----LMEPWKVLEKAALALKPD 191 (258)
T ss_dssp CCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEE
T ss_pred CCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCC
Confidence 344589999983 456678999999999985
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.8e-12 Score=101.10 Aligned_cols=112 Identities=19% Similarity=0.036 Sum_probs=82.5
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEc
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~ 128 (169)
|-...++..+.......++.+|||+|||+|.+++.++..+ .+|+++|++ +.+++.+++|++.+++. +++...+.
T Consensus 186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~--~~~i~~a~~n~~~~g~~~i~~~~~D~ 263 (354)
T 3tma_A 186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLD--EKRLGLAREAALASGLSWIRFLRADA 263 (354)
T ss_dssp SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESC--HHHHHHHHHHHHHTTCTTCEEEECCG
T ss_pred CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECC--HHHHHHHHHHHHHcCCCceEEEeCCh
Confidence 3455677777766555678899999999999999999875 699999999 67999999999999875 44433333
Q ss_pred CCCCcCCCCCCCcEEEEcCcCCCCCC---------hHHHHHHHHHhccCC
Q 030935 129 GFLDASIFDLNPNIILGADVFYDASG---------KICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~iy~~~~---------~~~l~~~l~~~L~p~ 169 (169)
.+. ......||+|+++.+ |.... +..+++.+++.|+|+
T Consensus 264 ~~~--~~~~~~~D~Ii~npP-yg~r~~~~~~~~~~~~~~~~~~~~~Lkpg 310 (354)
T 3tma_A 264 RHL--PRFFPEVDRILANPP-HGLRLGRKEGLFHLYWDFLRGALALLPPG 310 (354)
T ss_dssp GGG--GGTCCCCSEEEECCC-SCC----CHHHHHHHHHHHHHHHHTSCTT
T ss_pred hhC--ccccCCCCEEEECCC-CcCccCCcccHHHHHHHHHHHHHHhcCCC
Confidence 322 122346899998555 43322 367899999999985
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.3e-12 Score=100.98 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=76.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|..+..+++. +.+++++|++ . +++.+++++..+++..++. +..++......+..||+|+++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~--~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~D~v~~~ 239 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-S--VLEVAKENARIQGVASRYH-TIAGSAFEVDYGNDYDLVLLP 239 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-H--HHHHHHHHHHHHTCGGGEE-EEESCTTTSCCCSCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-H--HHHHHHHHHHhcCCCcceE-EEecccccCCCCCCCcEEEEc
Confidence 45679999999999999999887 5699999998 5 9999999998887754333 333444332233459999999
Q ss_pred CcCCCC--CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.++|+. .....+++.+.+.|+|+
T Consensus 240 ~~l~~~~~~~~~~~l~~~~~~L~pg 264 (335)
T 2r3s_A 240 NFLHHFDVATCEQLLRKIKTALAVE 264 (335)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred chhccCCHHHHHHHHHHHHHhCCCC
Confidence 999987 44578999999999985
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=99.55 Aligned_cols=94 Identities=12% Similarity=-0.035 Sum_probs=68.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC-CCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL-NPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~-~fDlIi~s 146 (169)
++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.|++|++.|++..++. +..++..+...+. +||+|+.+
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~--~~al~~A~~N~~~~gl~~~I~-v~~gD~l~~~~~~~~~D~Ivia 97 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVV--DGPFQSAQKQVRSSGLTEQID-VRKGNGLAVIEKKDAIDTIVIA 97 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESS--HHHHHHHHHHHHHTTCTTTEE-EEECSGGGGCCGGGCCCEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCCceEE-EEecchhhccCccccccEEEEe
Confidence 567999999999999999999874 79999999 579999999999999865443 4455554444433 69998864
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
-+-- ..+..+++...+.|+|
T Consensus 98 gmGg--~lI~~IL~~~~~~L~~ 117 (244)
T 3gnl_A 98 GMGG--TLIRTILEEGAAKLAG 117 (244)
T ss_dssp EECH--HHHHHHHHHTGGGGTT
T ss_pred CCch--HHHHHHHHHHHHHhCC
Confidence 3321 1234455555555544
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=104.46 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=76.3
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHH-------HHHHHHhCCc-ceEEEEEcC-
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNM-------RRVCEMNKLN-CRVMGLTWG- 129 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~-------~~n~~~n~~~-~~~~~l~~~- 129 (169)
.+.+.....++.+|||||||+|.+++.+++. ++ +|+++|++ +.+++.| ++|++.+++. .++. +..+
T Consensus 233 ~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis--~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~-~i~gD 309 (433)
T 1u2z_A 233 DVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIM--DDASDLTILQYEELKKRCKLYGMRLNNVE-FSLKK 309 (433)
T ss_dssp HHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECC--HHHHHHHHHHHHHHHHHHHHTTBCCCCEE-EEESS
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHhHHHHHHHHHHcCCCCCceE-EEEcC
Confidence 3444444557889999999999999999985 54 79999999 5687777 8888888743 2232 3333
Q ss_pred CCCcC--C--CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDAS--I--FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~--~--~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..... + ...+||+|+++.+++ ..+.+.+++.+.+.|+||
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVG 352 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTT
T ss_pred ccccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCC
Confidence 22211 1 135899999987774 467778889999999996
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.8e-12 Score=99.40 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-----------
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----------- 134 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----------- 134 (169)
.++++|||+|||+|..++.+++. +.+|+++|++ +.+++.++++++.++...++. +..++....
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~g~~~~v~-~~~~d~~~~~~~~~~~~~~~ 135 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVS--EEWTNVARKYWKENGLENKIF-LKLGSALETLQVLIDSKSAP 135 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHTTCGGGEE-EEESCHHHHHHHHHHCSSCC
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCCEE-EEECCHHHHHHHHHhhcccc
Confidence 35789999999999999999987 5699999999 579999999999888754333 223332111
Q ss_pred -----CC-C-CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 -----IF-D-LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 -----~~-~-~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+. + .+||+|++. +....++.+++.+.+.|+|+
T Consensus 136 ~~~~~f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L~pg 174 (239)
T 2hnk_A 136 SWASDFAFGPSSIDLFFLD---ADKENYPNYYPLILKLLKPG 174 (239)
T ss_dssp GGGTTTCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEE
T ss_pred cccccccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHcCCC
Confidence 11 1 689999986 34566778999999999985
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-12 Score=96.28 Aligned_cols=96 Identities=13% Similarity=-0.019 Sum_probs=72.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~~~fDlI 143 (169)
.+.+|||||||+|..++.+|+.. .+|+++|++ +.+++.+++|++.+++.. + .+..++.... +.+.+||.|
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s--~~~l~~a~~~~~~~~l~n-v-~~~~~Da~~~l~~~~~~~~~d~v 109 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVH--SPGVGACLASAHEEGLSN-L-RVMCHDAVEVLHKMIPDNSLRMV 109 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSC--HHHHHHHHHHHHHTTCSS-E-EEECSCHHHHHHHHSCTTCEEEE
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEec--HHHHHHHHHHHHHhCCCc-E-EEEECCHHHHHHHHcCCCChheE
Confidence 56799999999999999999875 479999999 579999999999888753 2 2344443221 345699999
Q ss_pred EEc--CcCCCCCCh------HHHHHHHHHhccCC
Q 030935 144 LGA--DVFYDASGK------ICAFEILICSLFPI 169 (169)
Q Consensus 144 i~s--d~iy~~~~~------~~l~~~l~~~L~p~ 169 (169)
++. |+.+..... +.+++.+.+.|+||
T Consensus 110 ~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpG 143 (218)
T 3dxy_A 110 QLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLG 143 (218)
T ss_dssp EEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEE
T ss_pred EEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCC
Confidence 987 554433222 36999999999986
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.3e-12 Score=95.56 Aligned_cols=96 Identities=13% Similarity=0.050 Sum_probs=68.6
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc----CCCCCC
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA----SIFDLN 139 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~----~~~~~~ 139 (169)
....++.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+ .++.+. .++... .....+
T Consensus 70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s--~~~~~~a~~~~~~~-~~v~~~---~~d~~~~~~~~~~~~~ 143 (230)
T 1fbn_A 70 MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAER-ENIIPI---LGDANKPQEYANIVEK 143 (230)
T ss_dssp CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESC--HHHHHHHHHHTTTC-TTEEEE---ECCTTCGGGGTTTSCC
T ss_pred cCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECC--HHHHHHHHHHhhcC-CCeEEE---ECCCCCcccccccCcc
Confidence 33446789999999999999999987 4 599999999 57999999988755 333332 333322 112258
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|+. ++ ......+.+++.+.+.|+|+
T Consensus 144 ~D~v~~-~~-~~~~~~~~~l~~~~~~Lkpg 171 (230)
T 1fbn_A 144 VDVIYE-DV-AQPNQAEILIKNAKWFLKKG 171 (230)
T ss_dssp EEEEEE-CC-CSTTHHHHHHHHHHHHEEEE
T ss_pred EEEEEE-ec-CChhHHHHHHHHHHHhCCCC
Confidence 999993 22 22233378899999999985
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-11 Score=93.52 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=72.6
Q ss_pred ceeecchH-HHHHHHHHhc--cCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcce
Q 030935 48 GLFVWPCS-VILAEYVWQQ--RYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (169)
Q Consensus 48 g~~~W~~~-~~La~~l~~~--~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~ 122 (169)
..+.|... ..++..+... ....++.+|||+|||+|..+..+++.. .+|+++|++ +.|++.+.++++.. .++.
T Consensus 32 ~y~~~~~~~~~l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s--~~~l~~~~~~a~~~-~~v~ 108 (210)
T 1nt2_A 32 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYS--AKPFEKLLELVRER-NNII 108 (210)
T ss_dssp TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCC--HHHHHHHHHHHHHC-SSEE
T ss_pred hhhhcChhHHHHHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECC--HHHHHHHHHHHhcC-CCeE
Confidence 44556432 2344444332 223467899999999999999888864 589999999 56877666655432 1222
Q ss_pred EEEEEcCCCCcC----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 123 VMGLTWGFLDAS----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~~~----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+ ..++.... ....+||+|++. + ........+++.+.+.||||
T Consensus 109 ~---~~~d~~~~~~~~~~~~~fD~V~~~-~-~~~~~~~~~l~~~~r~Lkpg 154 (210)
T 1nt2_A 109 P---LLFDASKPWKYSGIVEKVDLIYQD-I-AQKNQIEILKANAEFFLKEK 154 (210)
T ss_dssp E---ECSCTTCGGGTTTTCCCEEEEEEC-C-CSTTHHHHHHHHHHHHEEEE
T ss_pred E---EEcCCCCchhhcccccceeEEEEe-c-cChhHHHHHHHHHHHHhCCC
Confidence 2 22333221 123689999986 3 33344455689999999985
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=4.3e-13 Score=110.80 Aligned_cols=108 Identities=16% Similarity=0.066 Sum_probs=79.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-C
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-S 134 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~ 134 (169)
..+++.+.......++.+|||+|||+|..+..+++.|.+|+++|++ +.+++.++++ +.......+..+.... +
T Consensus 93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s--~~~~~~a~~~----~~~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPS--SGVAAKAREK----GIRVRTDFFEKATADDVR 166 (416)
T ss_dssp HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCC--HHHHHHHHTT----TCCEECSCCSHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCC--HHHHHHHHHc----CCCcceeeechhhHhhcc
Confidence 3455555555555578899999999999999999999999999999 5699888765 3322110000000000 1
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|++..++++..+...+++.+++.|+|+
T Consensus 167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~Lkpg 201 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPD 201 (416)
T ss_dssp HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEE
T ss_pred cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCC
Confidence 12468999999999999999999999999999985
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-12 Score=93.42 Aligned_cols=92 Identities=20% Similarity=0.153 Sum_probs=71.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc-Cc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA-DV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s-d~ 148 (169)
++.+|||+|||+|..+..+++.+.+|+++|++ +.+++.++++.. .+.+...+.... +..+.+||+|+++ ++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~--~~~~~~a~~~~~----~~~~~~~d~~~~--~~~~~~~D~i~~~~~~ 117 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLD--PILIDYAKQDFP----EARWVVGDLSVD--QISETDFDLIVSAGNV 117 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHHCT----TSEEEECCTTTS--CCCCCCEEEEEECCCC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCC--HHHHHHHHHhCC----CCcEEEcccccC--CCCCCceeEEEECCcH
Confidence 67899999999999999999999999999999 569999988763 233333333221 2334689999998 77
Q ss_pred CCCC--CChHHHHHHHHHhccCC
Q 030935 149 FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. .....+++.+.+.|+|+
T Consensus 118 ~~~~~~~~~~~~l~~~~~~l~~~ 140 (195)
T 3cgg_A 118 MGFLAEDGREPALANIHRALGAD 140 (195)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEEE
T ss_pred HhhcChHHHHHHHHHHHHHhCCC
Confidence 7765 45688999999999984
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.7e-12 Score=102.18 Aligned_cols=98 Identities=15% Similarity=-0.031 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhC--------CcceEEEEEcCCCC--cCCC--
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNK--------LNCRVMGLTWGFLD--ASIF-- 136 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~--------~~~~~~~l~~~~~~--~~~~-- 136 (169)
++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.++++...++ ..+.+...+..... ..+.
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 111 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIA--DVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDP 111 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSST
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCC--HHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccC
Confidence 5679999999999999988875 4599999999 569999999887542 12333333332221 0121
Q ss_pred CCCCcEEEEcCcCCCC----CChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
+.+||+|+++.++++. .....+++.+.+.|+|+
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkpg 148 (313)
T 3bgv_A 112 QMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPG 148 (313)
T ss_dssp TCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEE
T ss_pred CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCC
Confidence 2489999999999876 34578999999999985
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=105.06 Aligned_cols=97 Identities=19% Similarity=0.022 Sum_probs=73.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCCC-----CCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASIF-----DLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~~-----~~~fDl 142 (169)
++++|||+|||+|.+++.+++.|+ +|+++|++ +.+++.+++|++.|++ ..++. +..++...... ..+||+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s--~~al~~a~~n~~~ngl~~~~v~-~~~~D~~~~~~~~~~~~~~fD~ 296 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTS--QEALDIARQNVELNKLDLSKAE-FVRDDVFKLLRTYRDRGEKFDV 296 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCGGGEE-EEESCHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHHcCCCccceE-EEECCHHHHHHHHHhcCCCCCE
Confidence 678999999999999999999876 89999999 5799999999999998 42222 33333322111 358999
Q ss_pred EEEcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
|++..+.+.. ..+..++..+.+.|+|+
T Consensus 297 Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 332 (396)
T 3c0k_A 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEG 332 (396)
T ss_dssp EEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEE
T ss_pred EEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9985544332 55678888899999884
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-11 Score=99.74 Aligned_cols=98 Identities=17% Similarity=0.084 Sum_probs=76.9
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
+..++.+|||+|||+|..+..+++.. .+++++|+ + .+++.+++++...++..++. +..++...+... .||+|+
T Consensus 199 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~l~~~v~-~~~~d~~~~~p~-~~D~v~ 273 (369)
T 3gwz_A 199 DFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-P--PVAEEARELLTGRGLADRCE-ILPGDFFETIPD-GADVYL 273 (369)
T ss_dssp CCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTCTTTEE-EEECCTTTCCCS-SCSEEE
T ss_pred CCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-H--HHHHHHHHhhhhcCcCCceE-EeccCCCCCCCC-CceEEE
Confidence 33456799999999999999998874 48999999 4 59999999998887643333 333444333333 899999
Q ss_pred EcCcCCCCCChH--HHHHHHHHhccCC
Q 030935 145 GADVFYDASGKI--CAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~--~l~~~l~~~L~p~ 169 (169)
++.++++..+.. .+++.++++|+|+
T Consensus 274 ~~~vlh~~~d~~~~~~L~~~~~~L~pg 300 (369)
T 3gwz_A 274 IKHVLHDWDDDDVVRILRRIATAMKPD 300 (369)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred hhhhhccCCHHHHHHHHHHHHHHcCCC
Confidence 999999887665 7999999999996
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-12 Score=95.58 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=74.9
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
.++..+.+.....++.+|||+|||+|..+..+++.+ .+|+++|++ +.+++.+++|++.++... + .+..++.....
T Consensus 78 ~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~-v-~~~~~d~~~~~ 153 (235)
T 1jg1_A 78 HMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERI--PELVEFAKRNLERAGVKN-V-HVILGDGSKGF 153 (235)
T ss_dssp HHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESC--HHHHHHHHHHHHHTTCCS-E-EEEESCGGGCC
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCC--HHHHHHHHHHHHHcCCCC-c-EEEECCcccCC
Confidence 344455544445577899999999999999999876 799999999 569999999998887643 2 23344432333
Q ss_pred CC-CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FD-LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~-~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.. .+||+|++..++.+.. +.+.+.|+|+
T Consensus 154 ~~~~~fD~Ii~~~~~~~~~------~~~~~~L~pg 182 (235)
T 1jg1_A 154 PPKAPYDVIIVTAGAPKIP------EPLIEQLKIG 182 (235)
T ss_dssp GGGCCEEEEEECSBBSSCC------HHHHHTEEEE
T ss_pred CCCCCccEEEECCcHHHHH------HHHHHhcCCC
Confidence 32 3699999998876543 3677788874
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.4e-12 Score=98.69 Aligned_cols=94 Identities=15% Similarity=0.001 Sum_probs=72.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.+++|++.|++.. +. +..++........+||+|++
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s--~~av~~a~~n~~~n~l~~-~~-~~~~d~~~~~~~~~~D~Vi~ 192 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKN--PTAYHYLCENIKLNKLNN-VI-PILADNRDVELKDVADRVIM 192 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECC--HHHHHHHHHHHHHTTCSS-EE-EEESCGGGCCCTTCEEEEEE
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCC-EE-EEECChHHcCccCCceEEEE
Confidence 34678999999999999999999854 99999999 679999999999998753 22 33444433211458999998
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+. ....+++.+.+.|+|+
T Consensus 193 d~p~----~~~~~l~~~~~~Lkpg 212 (272)
T 3a27_A 193 GYVH----KTHKFLDKTFEFLKDR 212 (272)
T ss_dssp CCCS----SGGGGHHHHHHHEEEE
T ss_pred CCcc----cHHHHHHHHHHHcCCC
Confidence 6543 6778888888999884
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.32 E-value=8.1e-12 Score=93.82 Aligned_cols=93 Identities=22% Similarity=0.093 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCCCCCcEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIIL 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~~~fDlIi 144 (169)
++++|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++..++. +..++... +..+. ||+|+
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~-fD~v~ 131 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPD--RDNVEHARRMLHDNGLIDRVE-LQVGDPLGIAAGQRD-IDILF 131 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESC--HHHHHHHHHHHHHHSGGGGEE-EEESCHHHHHTTCCS-EEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHCCCCceEE-EEEecHHHHhccCCC-CCEEE
Confidence 5679999999999999999886 5699999999 579999999999887753333 22333221 22234 99999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+. ........+++.+.+.|+|+
T Consensus 132 ~~---~~~~~~~~~l~~~~~~Lkpg 153 (210)
T 3c3p_A 132 MD---CDVFNGADVLERMNRCLAKN 153 (210)
T ss_dssp EE---TTTSCHHHHHHHHGGGEEEE
T ss_pred Ec---CChhhhHHHHHHHHHhcCCC
Confidence 75 33567899999999999985
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=105.21 Aligned_cols=98 Identities=18% Similarity=-0.001 Sum_probs=70.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcCC-----CCCCCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDASI-----FDLNPN 141 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~~-----~~~~fD 141 (169)
.++++|||+|||+|.+++.+|+.|+ +|+++|+++. +++.+++|++.|++.. ++. +..++..... ...+||
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~--al~~A~~N~~~n~~~~~~v~-~~~~D~~~~l~~~~~~~~~fD 287 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKR--SRALSLAHFEANHLDMANHQ-LVVMDVFDYFKYARRHHLTYD 287 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTT--HHHHHHHHHHHTTCCCTTEE-EEESCHHHHHHHHHHTTCCEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHH--HHHHHHHHHHHcCCCccceE-EEECCHHHHHHHHHHhCCCcc
Confidence 3678999999999999999999887 8999999964 9999999999998852 222 3334432211 134899
Q ss_pred EEEEcCcCCC-----CC----ChHHHHHHHHHhccCC
Q 030935 142 IILGADVFYD-----AS----GKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~-----~~----~~~~l~~~l~~~L~p~ 169 (169)
+|++..+.+. .. .+..+++.+.+.|+|+
T Consensus 288 ~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pg 324 (385)
T 2b78_A 288 IIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN 324 (385)
T ss_dssp EEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred EEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCC
Confidence 9998554432 11 2344666778888874
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=95.61 Aligned_cols=119 Identities=11% Similarity=0.016 Sum_probs=85.2
Q ss_pred CcceeecchHH-HHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHHh-CC--eEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 46 EYGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV-GS--NVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 46 ~~g~~~W~~~~-~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~~-ga--~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
+...+.|.--. .||.-+... ....+|.+|||||||+|..+..+|+. |. +|+++|++ ++|++.++++++..+
T Consensus 49 ~~e~r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s--~~~~~~l~~~a~~~~ 126 (233)
T 4df3_A 49 GEEYREWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA--PRVMRDLLTVVRDRR 126 (233)
T ss_dssp TEEEEECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECC--HHHHHHHHHHSTTCT
T ss_pred CceeeeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCC--HHHHHHHHHhhHhhc
Confidence 35789998754 566666543 44568999999999999999999985 43 89999999 679999988876543
Q ss_pred CcceEEEEEcCCCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 119 LNCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 119 ~~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
++.....+...... ......+|+|++ | ++++.+.+.+++.+++.|||+
T Consensus 127 -ni~~V~~d~~~p~~~~~~~~~vDvVf~-d-~~~~~~~~~~l~~~~r~LKpG 175 (233)
T 4df3_A 127 -NIFPILGDARFPEKYRHLVEGVDGLYA-D-VAQPEQAAIVVRNARFFLRDG 175 (233)
T ss_dssp -TEEEEESCTTCGGGGTTTCCCEEEEEE-C-CCCTTHHHHHHHHHHHHEEEE
T ss_pred -CeeEEEEeccCccccccccceEEEEEE-e-ccCChhHHHHHHHHHHhccCC
Confidence 22222233333221 223458999986 4 455677788999999999985
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=102.96 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=69.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHh-----------------CCc----------
Q 030935 69 FSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMN-----------------KLN---------- 120 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n-----------------~~~---------- 120 (169)
.++.+|||||||+|..++.+++ .+.+|+++|++ +.|++.++++++.. +..
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 147 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFL--EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL 147 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSC--HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCC--HHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHH
Confidence 3678999999999996665555 36699999999 56999988865421 100
Q ss_pred -ceEEEEEcCCCCc--C-----CCCCCCcEEEEcCcCCC----CCChHHHHHHHHHhccCC
Q 030935 121 -CRVMGLTWGFLDA--S-----IFDLNPNIILGADVFYD----ASGKICAFEILICSLFPI 169 (169)
Q Consensus 121 -~~~~~l~~~~~~~--~-----~~~~~fDlIi~sd~iy~----~~~~~~l~~~l~~~L~p~ 169 (169)
..+..+...+... + ..+.+||+|+++.++++ ..++..+++.+.+.||||
T Consensus 148 ~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpG 208 (289)
T 2g72_A 148 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 208 (289)
T ss_dssp HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred HhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCC
Confidence 0011122223222 1 22346999999999988 557899999999999996
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.6e-11 Score=98.27 Aligned_cols=98 Identities=8% Similarity=-0.014 Sum_probs=76.4
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...++.+|||+|||+|..+..+++.. .+++++|+ +. +++.++++++.+++..++. +..++......+ .+|+|+
T Consensus 187 ~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~-~~D~v~ 261 (359)
T 1x19_A 187 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PG--AIDLVNENAAEKGVADRMR-GIAVDIYKESYP-EADAVL 261 (359)
T ss_dssp CCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GG--GHHHHHHHHHHTTCTTTEE-EEECCTTTSCCC-CCSEEE
T ss_pred CCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HH--HHHHHHHHHHhcCCCCCEE-EEeCccccCCCC-CCCEEE
Confidence 34467799999999999999999874 49999999 64 9999999998887653332 333444332222 449999
Q ss_pred EcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 145 GADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
++.++++..+ ...+++.+.+.|+|+
T Consensus 262 ~~~vlh~~~d~~~~~~l~~~~~~L~pg 288 (359)
T 1x19_A 262 FCRILYSANEQLSTIMCKKAFDAMRSG 288 (359)
T ss_dssp EESCGGGSCHHHHHHHHHHHHTTCCTT
T ss_pred EechhccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998776 788999999999996
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.4e-11 Score=100.12 Aligned_cols=96 Identities=18% Similarity=0.084 Sum_probs=75.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|..+..+++.. .+++++|+ + .+++.+++++..+++..++. +..++..... +..||+|+++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~D~v~~~ 255 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-A--GPAERARRRFADAGLADRVT-VAEGDFFKPL-PVTADVVLLS 255 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTCTTTEE-EEECCTTSCC-SCCEEEEEEE
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-H--HHHHHHHHHHHhcCCCCceE-EEeCCCCCcC-CCCCCEEEEe
Confidence 456799999999999999999874 58999999 5 49999999998887653332 3334443332 3359999999
Q ss_pred CcCCCCCChH--HHHHHHHHhccCC
Q 030935 147 DVFYDASGKI--CAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~--~l~~~l~~~L~p~ 169 (169)
.++++..+.. .+++.+.+.|+|+
T Consensus 256 ~vl~~~~~~~~~~~l~~~~~~L~pg 280 (374)
T 1qzz_A 256 FVLLNWSDEDALTILRGCVRALEPG 280 (374)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCC
Confidence 9998876654 8999999999985
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.1e-12 Score=96.76 Aligned_cols=94 Identities=13% Similarity=-0.021 Sum_probs=72.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CC-----CCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SI-----FDL 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~-----~~~ 138 (169)
++++|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++..++. +..++... .. ...
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~g~~~~i~-~~~gda~~~l~~l~~~~~~~~ 146 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFD--REAYEIGLPFIRKAGVEHKIN-FIESDAMLALDNLLQGQESEG 146 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHTTCGGGEE-EEESCHHHHHHHHHHSTTCTT
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEEcCHHHHHHHHHhccCCCC
Confidence 5679999999999999999986 5699999999 579999999999888754333 33343322 11 145
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|++. .....+..+++.+.+.|+||
T Consensus 147 ~fD~I~~d---~~~~~~~~~l~~~~~~L~pG 174 (237)
T 3c3y_A 147 SYDFGFVD---ADKPNYIKYHERLMKLVKVG 174 (237)
T ss_dssp CEEEEEEC---SCGGGHHHHHHHHHHHEEEE
T ss_pred CcCEEEEC---CchHHHHHHHHHHHHhcCCC
Confidence 89999974 23456789999999999985
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=93.60 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=76.2
Q ss_pred eeecc-hHHHHHHHHHh---ccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 49 LFVWP-CSVILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 49 ~~~W~-~~~~La~~l~~---~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.+.|. ....++..+.. .....++.+|||+|||+|..++.+++. | .+|+++|++ +.+++.+++|++.+ .++
T Consensus 48 ~~~~~p~~~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~~~~~~~~~~-~~v 124 (227)
T 1g8a_A 48 YRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFS--PRVLRELVPIVEER-RNI 124 (227)
T ss_dssp EEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHSSC-TTE
T ss_pred EEEeCCCchhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECC--HHHHHHHHHHHhcc-CCC
Confidence 34543 33444455532 233446789999999999999999976 4 589999999 56999999988765 333
Q ss_pred eEEEEEcCCCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 122 RVMGLTWGFLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+...+..+... ...+.+||+|++..+ .......+++.+.+.|+|+
T Consensus 125 ~~~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~Lkpg 171 (227)
T 1g8a_A 125 VPILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRG 171 (227)
T ss_dssp EEEECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEE
T ss_pred EEEEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCC
Confidence 333333222110 112348999997443 3333345599999999985
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-12 Score=95.72 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=71.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CC----CC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IF----DL 138 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~----~~ 138 (169)
.++++|||+|||+|..++.+++. +.+|+++|+++ .+++.+++|++.++...++. +..++.... .. ..
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~--~~~~~a~~~~~~~g~~~~i~-~~~~d~~~~~~~~~~~~~~~ 144 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKID-LRLKPALETLDELLAAGEAG 144 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEE-EEESCHHHHHHHHHHTTCTT
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCH--HHHHHHHHHHHHCCCCCeEE-EEEcCHHHHHHHHHhcCCCC
Confidence 46789999999999999999985 56999999995 59999999999888743332 223332211 11 15
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|++... ...+..+++.+.+.|+|+
T Consensus 145 ~~D~v~~d~~---~~~~~~~l~~~~~~L~pg 172 (229)
T 2avd_A 145 TFDVAVVDAD---KENCSAYYERCLQLLRPG 172 (229)
T ss_dssp CEEEEEECSC---STTHHHHHHHHHHHEEEE
T ss_pred CccEEEECCC---HHHHHHHHHHHHHHcCCC
Confidence 8999998433 556788999999999985
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-11 Score=100.60 Aligned_cols=106 Identities=10% Similarity=-0.031 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLD 132 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~ 132 (169)
.+..+.+++.+.....++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.|++. +.+...++.+..
T Consensus 270 ~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s--~~al~~A~~n~~~~~~~~v~f~~~d~~~~l 347 (433)
T 1uwv_A 270 VNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV--PALVEKGQQNARLNGLQNVTFYHENLEEDV 347 (433)
T ss_dssp HHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCTTSCC
T ss_pred HHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCC--HHHHHHHHHHHHHcCCCceEEEECCHHHHh
Confidence 466677777665555567899999999999999999998899999999 57999999999999875 444433333321
Q ss_pred cC--CCCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 133 AS--IFDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 133 ~~--~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
.. ....+||+|++ |+-|... ..+++.+..
T Consensus 348 ~~~~~~~~~fD~Vv~-dPPr~g~--~~~~~~l~~ 378 (433)
T 1uwv_A 348 TKQPWAKNGFDKVLL-DPARAGA--AGVMQQIIK 378 (433)
T ss_dssp SSSGGGTTCCSEEEE-CCCTTCC--HHHHHHHHH
T ss_pred hhhhhhcCCCCEEEE-CCCCccH--HHHHHHHHh
Confidence 11 22358999997 5656433 356666554
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=7.9e-11 Score=98.11 Aligned_cols=105 Identities=17% Similarity=0.066 Sum_probs=76.1
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
..+..|.+++.. ..++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.|++.++ +..++..
T Consensus 276 ~~~e~l~~~~~~---~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s--~~ai~~A~~n~~~ngl~v~---~~~~d~~ 347 (425)
T 2jjq_A 276 YQAVNLVRKVSE---LVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSN--EFAIEMARRNVEINNVDAE---FEVASDR 347 (425)
T ss_dssp HHHHHHHHHHHH---HCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCCEE---EEECCTT
T ss_pred HHHHHHHHHhhc---cCCCCEEEEeeccchHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHcCCcEE---EEECChH
Confidence 345566666655 3367799999999999999999998899999999 5799999999999988733 4444443
Q ss_pred cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 133 ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.... .+||+|++. +.+. ...+.+++.+.. |+|+
T Consensus 348 ~~~~-~~fD~Vv~d-PPr~-g~~~~~~~~l~~-l~p~ 380 (425)
T 2jjq_A 348 EVSV-KGFDTVIVD-PPRA-GLHPRLVKRLNR-EKPG 380 (425)
T ss_dssp TCCC-TTCSEEEEC-CCTT-CSCHHHHHHHHH-HCCS
T ss_pred HcCc-cCCCEEEEc-CCcc-chHHHHHHHHHh-cCCC
Confidence 3222 289999984 4442 333456666653 6664
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.3e-11 Score=97.51 Aligned_cols=95 Identities=13% Similarity=-0.027 Sum_probs=74.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
+..+|||+|||+|..+..+++.. .+++++|+ + .+++.+++++...++..++. +..++...+.. ..||+|+++.
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~p-~~~D~v~~~~ 243 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-Q--GPASAAHRRFLDTGLSGRAQ-VVVGSFFDPLP-AGAGGYVLSA 243 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHHHHHHHHHHTTCTTTEE-EEECCTTSCCC-CSCSEEEEES
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-H--HHHHHHHHhhhhcCcCcCeE-EecCCCCCCCC-CCCcEEEEeh
Confidence 45799999999999999988854 48999999 4 59999999998877653332 33344433332 3899999999
Q ss_pred cCCCCCC--hHHHHHHHHHhccCC
Q 030935 148 VFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
++|+..+ ...+++.++++|+|+
T Consensus 244 vlh~~~~~~~~~~l~~~~~~L~pg 267 (332)
T 3i53_A 244 VLHDWDDLSAVAILRRCAEAAGSG 267 (332)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHTTT
T ss_pred hhccCCHHHHHHHHHHHHHhcCCC
Confidence 9998776 488999999999996
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=98.25 Aligned_cols=98 Identities=12% Similarity=-0.003 Sum_probs=76.8
Q ss_pred CCC-CCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcE
Q 030935 68 RFS-GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNI 142 (169)
Q Consensus 68 ~~~-~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDl 142 (169)
..+ +.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++++...+...++. +..++..... .+..||+
T Consensus 176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~D~ 251 (352)
T 3mcz_A 176 VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-P--TTRDAARKTIHAHDLGGRVE-FFEKNLLDARNFEGGAADV 251 (352)
T ss_dssp GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-G--GGHHHHHHHHHHTTCGGGEE-EEECCTTCGGGGTTCCEEE
T ss_pred CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-H--HHHHHHHHHHHhcCCCCceE-EEeCCcccCcccCCCCccE
Confidence 334 789999999999999999887 348999999 4 39999999998887754433 3344443332 4557999
Q ss_pred EEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
|+++.++++..+ ...+++.++++|+|+
T Consensus 252 v~~~~vlh~~~~~~~~~~l~~~~~~L~pg 280 (352)
T 3mcz_A 252 VMLNDCLHYFDAREAREVIGHAAGLVKPG 280 (352)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred EEEecccccCCHHHHHHHHHHHHHHcCCC
Confidence 999999997765 488999999999985
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-11 Score=98.16 Aligned_cols=96 Identities=15% Similarity=0.095 Sum_probs=74.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|..+..+++.+ .+++++|+ +. +++.+++|+..+++..++. +..++..... +..||+|+++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~D~v~~~ 256 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AG--TVDTARSYLKDEGLSDRVD-VVEGDFFEPL-PRKADAIILS 256 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TT--HHHHHHHHHHHTTCTTTEE-EEECCTTSCC-SSCEEEEEEE
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HH--HHHHHHHHHHhcCCCCceE-EEeCCCCCCC-CCCccEEEEc
Confidence 456799999999999999999875 47899998 54 9999999998887743322 3334443332 3359999999
Q ss_pred CcCCCCCCh--HHHHHHHHHhccCC
Q 030935 147 DVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
.++++..+. ..+++.+.+.|+|+
T Consensus 257 ~vl~~~~~~~~~~~l~~~~~~L~pg 281 (360)
T 1tw3_A 257 FVLLNWPDHDAVRILTRCAEALEPG 281 (360)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCC
Confidence 999877655 58999999999985
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.4e-11 Score=93.94 Aligned_cols=102 Identities=17% Similarity=0.068 Sum_probs=74.2
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHh-C-CcceEEEEEcCCCCcC
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMN-K-LNCRVMGLTWGFLDAS 134 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n-~-~~~~~~~l~~~~~~~~ 134 (169)
.++.......++.+|||+|||+|.+++.+++. +.+|+++|++ +.+++.+++|++.+ + +..++. +..++....
T Consensus 89 ~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~g~~~~~v~-~~~~d~~~~ 165 (280)
T 1i9g_A 89 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR--ADHAEHARRNVSGCYGQPPDNWR-LVVSDLADS 165 (280)
T ss_dssp HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHHHHHHHHHHHHTSCCTTEE-EECSCGGGC
T ss_pred HHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHhcCCCCCcEE-EEECchHhc
Confidence 34444444557889999999999999999985 5699999999 57999999999887 4 221222 333443332
Q ss_pred -CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 -IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 -~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|++. ..+...+++.+.+.|+|+
T Consensus 166 ~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~pg 196 (280)
T 1i9g_A 166 ELPDGSVDRAVLD-----MLAPWEVLDAVSRLLVAG 196 (280)
T ss_dssp CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEE
T ss_pred CCCCCceeEEEEC-----CcCHHHHHHHHHHhCCCC
Confidence 234589999982 346668899999999885
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.1e-11 Score=98.01 Aligned_cols=96 Identities=9% Similarity=-0.002 Sum_probs=74.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC---CCCCcE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF---DLNPNI 142 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~---~~~fDl 142 (169)
..++++|||+| |+|.+++.+++.+. +|+++|++ +.+++.+++|++.+++. ++. +..++....+. +.+||+
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~--~~~l~~a~~~~~~~g~~-~v~-~~~~D~~~~l~~~~~~~fD~ 244 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDID--ERLTKFIEKAANEIGYE-DIE-IFTFDLRKPLPDYALHKFDT 244 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSC--HHHHHHHHHHHHHHTCC-CEE-EECCCTTSCCCTTTSSCBSE
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHHHcCCC-CEE-EEEChhhhhchhhccCCccE
Confidence 34688999999 99999999999875 89999999 57999999999999874 322 44455443222 348999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+++.+ |.......+++.+.+.|+|+
T Consensus 245 Vi~~~p-~~~~~~~~~l~~~~~~Lkpg 270 (373)
T 2qm3_A 245 FITDPP-ETLEAIRAFVGRGIATLKGP 270 (373)
T ss_dssp EEECCC-SSHHHHHHHHHHHHHTBCST
T ss_pred EEECCC-CchHHHHHHHHHHHHHcccC
Confidence 998654 43334688999999999995
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=99.19 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=68.8
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHh-------CCc---ceEEEEE
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMN-------KLN---CRVMGLT 127 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n-------~~~---~~~~~l~ 127 (169)
++.......++.+|||+|||+|.+++.+++. | .+|+++|++ +.+++.+++|+... ++. .++ .+.
T Consensus 96 ~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v-~~~ 172 (336)
T 2b25_A 96 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR--KDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFI 172 (336)
T ss_dssp HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESS--HHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEE
T ss_pred HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCC--HHHHHHHHHHHHHhhcccccccccccCCce-EEE
Confidence 3333334567889999999999999999986 5 589999999 57999999999853 221 122 233
Q ss_pred cCCCCcC---CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 128 WGFLDAS---IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~---~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++.... ..+.+||+|++... ....+++.+.+.|+|+
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lkpg 212 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDML-----NPHVTLPVFYPHLKHG 212 (336)
T ss_dssp ESCTTCCC-------EEEEEECSS-----STTTTHHHHGGGEEEE
T ss_pred ECChHHcccccCCCCeeEEEECCC-----CHHHHHHHHHHhcCCC
Confidence 4444332 23347999998432 3344788899999885
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.4e-11 Score=92.68 Aligned_cols=95 Identities=13% Similarity=-0.025 Sum_probs=68.0
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCCCC
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFDLN 139 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~~~ 139 (169)
...++.+|||+|||+|.++..+++. | .+|+++|++ +.+++.+.++++.+ ..+. +..++.... ....+
T Consensus 74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s--~~~i~~~~~~a~~~-~~v~---~~~~d~~~~~~~~~~~~~ 147 (233)
T 2ipx_A 74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFS--HRSGRDLINLAKKR-TNII---PVIEDARHPHKYRMLIAM 147 (233)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCC--HHHHHHHHHHHHHC-TTEE---EECSCTTCGGGGGGGCCC
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHhhcc-CCeE---EEEcccCChhhhcccCCc
Confidence 3446789999999999999999886 3 589999999 56888888877765 2233 333443321 13458
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++..+ .......+++.+.+.|+|+
T Consensus 148 ~D~V~~~~~--~~~~~~~~~~~~~~~Lkpg 175 (233)
T 2ipx_A 148 VDVIFADVA--QPDQTRIVALNAHTFLRNG 175 (233)
T ss_dssp EEEEEECCC--CTTHHHHHHHHHHHHEEEE
T ss_pred EEEEEEcCC--CccHHHHHHHHHHHHcCCC
Confidence 999998433 3344456788899999985
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-12 Score=101.55 Aligned_cols=95 Identities=16% Similarity=0.148 Sum_probs=72.8
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--C-----CC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--F-----DL 138 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~-----~~ 138 (169)
.++++|||+|||+|..++.+++. +++|+++|+++. +++.+++|++.+++..++. +..++..+.. . ..
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~--~~~~a~~~~~~~g~~~~i~-~~~gda~~~l~~~~~~~~~~ 135 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEG--WTKHAHPYWREAKQEHKIK-LRLGPALDTLHSLLNEGGEH 135 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCS--SCCCSHHHHHHTTCTTTEE-EEESCHHHHHHHHHHHHCSS
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHH--HHHHHHHHHHHcCCCCcEE-EEEcCHHHHHHHHhhccCCC
Confidence 35679999999999999999984 569999999965 9999999999988754333 3334432211 1 36
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|++... ...+..+++.+.+.|+||
T Consensus 136 ~fD~V~~d~~---~~~~~~~l~~~~~~LkpG 163 (242)
T 3r3h_A 136 QFDFIFIDAD---KTNYLNYYELALKLVTPK 163 (242)
T ss_dssp CEEEEEEESC---GGGHHHHHHHHHHHEEEE
T ss_pred CEeEEEEcCC---hHHhHHHHHHHHHhcCCC
Confidence 8999997532 566788999999999985
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3e-11 Score=100.08 Aligned_cols=112 Identities=12% Similarity=0.003 Sum_probs=77.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHH-------HhCCcceEEE
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCE-------MNKLNCRVMG 125 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~-------~n~~~~~~~~ 125 (169)
...+...+.......++.+|||||||+|.+.+.+|+. ++ +|+++|++ +.+++.|++|++ .+++...-..
T Consensus 158 ~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS--~~~lelAr~n~e~frkr~~~~Gl~~~rVe 235 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKA--DIPAKYAETMDREFRKWMKWYGKKHAEYT 235 (438)
T ss_dssp HHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECC--HHHHHHHHHHHHHHHHHHHHHTBCCCEEE
T ss_pred CHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHHHHHHHHhCCCCCCeE
Confidence 3333444444445567889999999999999988864 66 59999999 569988887653 3454211233
Q ss_pred EEcCCCCcCCCC---CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 126 LTWGFLDASIFD---LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~~~~~~~---~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+++...... ..||+|+++.++| ..+....++.+.+.|+||
T Consensus 236 fi~GD~~~lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPG 281 (438)
T 3uwp_A 236 LERGDFLSEEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEG 281 (438)
T ss_dssp EEECCTTSHHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTT
T ss_pred EEECcccCCccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCC
Confidence 556665432221 3799999987654 567777778889999997
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-11 Score=97.10 Aligned_cols=93 Identities=15% Similarity=0.033 Sum_probs=72.6
Q ss_pred CeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
.+|||+|||+|..+..+++. +.+++++|+ +. +++.+++++..+++..++. +..++...+ .+.+||+|++..++
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~--~~~~a~~~~~~~~~~~~v~-~~~~d~~~~-~~~~~D~v~~~~vl 243 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EG--SLGVARDNLSSLLAGERVS-LVGGDMLQE-VPSNGDIYLLSRII 243 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TT--CTHHHHHHTHHHHHTTSEE-EEESCTTTC-CCSSCSEEEEESCG
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HH--HHHHHHHHHhhcCCCCcEE-EecCCCCCC-CCCCCCEEEEchhc
Confidence 89999999999999999887 458999999 64 9999999887665432222 333444333 33579999999999
Q ss_pred CCCCChH--HHHHHHHHhccCC
Q 030935 150 YDASGKI--CAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~--~l~~~l~~~L~p~ 169 (169)
++..+.. .+++.+.+.|+|+
T Consensus 244 ~~~~~~~~~~~l~~~~~~L~pg 265 (334)
T 2ip2_A 244 GDLDEAASLRLLGNCREAMAGD 265 (334)
T ss_dssp GGCCHHHHHHHHHHHHHHSCTT
T ss_pred cCCCHHHHHHHHHHHHHhcCCC
Confidence 8665544 9999999999996
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=89.19 Aligned_cols=88 Identities=14% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.+++|+. .+++...+..+ .+.+||+|+++
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~--~~~~~~a~~~~~----~~~~~~~d~~~-----~~~~~D~v~~~ 117 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDID--PDAIETAKRNCG----GVNFMVADVSE-----ISGKYDTWIMN 117 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESC--HHHHHHHHHHCT----TSEEEECCGGG-----CCCCEEEEEEC
T ss_pred CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECC--HHHHHHHHHhcC----CCEEEECcHHH-----CCCCeeEEEEC
Confidence 44678999999999999999999876 79999999 569999999876 33433333322 13689999998
Q ss_pred CcCCCCCC--hHHHHHHHHHhc
Q 030935 147 DVFYDASG--KICAFEILICSL 166 (169)
Q Consensus 147 d~iy~~~~--~~~l~~~l~~~L 166 (169)
.++++... ...+++.+.+.|
T Consensus 118 ~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 118 PPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCC-------CHHHHHHHHHHE
T ss_pred CCchhccCchhHHHHHHHHHhc
Confidence 88776543 345666665544
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.6e-11 Score=100.82 Aligned_cols=96 Identities=13% Similarity=-0.064 Sum_probs=72.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-----CCCCcEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF-----DLNPNIIL 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~-----~~~fDlIi 144 (169)
++.+|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.|++.. ..+..++...... ..+||+|+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s--~~~~~~a~~n~~~n~~~~--~~~~~~d~~~~~~~~~~~~~~fD~Ii 284 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSS--AEALRRAEENARLNGLGN--VRVLEANAFDLLRRLEKEGERFDLVV 284 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESC--HHHHHHHHHHHHHTTCTT--EEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHHHcCCCC--ceEEECCHHHHHHHHHhcCCCeeEEE
Confidence 67899999999999999999986689999999 579999999999999863 2233444322111 45899999
Q ss_pred EcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 145 GADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
+..+.|.. ..+..+++.+.+.|+|+
T Consensus 285 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 318 (382)
T 1wxx_A 285 LDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG 318 (382)
T ss_dssp ECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 84443332 23567888888888885
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.7e-12 Score=96.13 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=71.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CC--CC--CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SI--FD--LN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~--~~--~~ 139 (169)
++++|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++..++. +..++..+ .. .+ .+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~--~~~~~~a~~~~~~~g~~~~i~-~~~~d~~~~l~~l~~~~~~~~ 148 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQD--PNATAIAKKYWQKAGVAEKIS-LRLGPALATLEQLTQGKPLPE 148 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEE-EEESCHHHHHHHHHTSSSCCC
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEEcCHHHHHHHHHhcCCCCC
Confidence 5679999999999999999985 4599999999 579999999999888754333 33343211 11 11 58
Q ss_pred CcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++... ...+..+++.+.+.|+|+
T Consensus 149 fD~V~~d~~---~~~~~~~l~~~~~~Lkpg 175 (232)
T 3cbg_A 149 FDLIFIDAD---KRNYPRYYEIGLNLLRRG 175 (232)
T ss_dssp EEEEEECSC---GGGHHHHHHHHHHTEEEE
T ss_pred cCEEEECCC---HHHHHHHHHHHHHHcCCC
Confidence 999997533 456788999999999985
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=97.10 Aligned_cols=96 Identities=15% Similarity=0.023 Sum_probs=74.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlIi~ 145 (169)
..++|||+|||+|..+..+++. +.+++++|+ + .+++.+++++...++..++. +..++.... ..+..||+|++
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~~~~p~~~D~v~~ 254 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-P--QQLEMMRKQTAGLSGSERIH-GHGANLLDRDVPFPTGFDAVWM 254 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-H--HHHHHHHHHHTTCTTGGGEE-EEECCCCSSSCCCCCCCSEEEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-H--HHHHHHHHHHHhcCcccceE-EEEccccccCCCCCCCcCEEEE
Confidence 4579999999999999999885 458999998 3 59999999998777643333 334444332 12368999999
Q ss_pred cCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 146 ADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+.++|+..+. ..+++.++++|+|+
T Consensus 255 ~~vlh~~~~~~~~~~l~~~~~~L~pg 280 (363)
T 3dp7_A 255 SQFLDCFSEEEVISILTRVAQSIGKD 280 (363)
T ss_dssp ESCSTTSCHHHHHHHHHHHHHHCCTT
T ss_pred echhhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999876544 57899999999996
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-11 Score=107.66 Aligned_cols=110 Identities=17% Similarity=-0.001 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFL 131 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~ 131 (169)
.......++... .+|++|||+|||||.+++.+++.|+ +|+++|++ +.+++.+++|++.|++. .++. +..++.
T Consensus 526 d~r~~r~~l~~~---~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s--~~al~~a~~N~~~ngl~~~~v~-~i~~D~ 599 (703)
T 3v97_A 526 DHRIARRMLGQM---SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMS--RTYLEWAERNLRLNGLTGRAHR-LIQADC 599 (703)
T ss_dssp GGHHHHHHHHHH---CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSTTEE-EEESCH
T ss_pred cHHHHHHHHHHh---cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccceE-EEecCH
Confidence 333344444432 3688999999999999999999888 69999999 57999999999999986 2222 333443
Q ss_pred CcC--CCCCCCcEEEEcCcCCCC-----------CChHHHHHHHHHhccCC
Q 030935 132 DAS--IFDLNPNIILGADVFYDA-----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~--~~~~~fDlIi~sd~iy~~-----------~~~~~l~~~l~~~L~p~ 169 (169)
... ....+||+|++..+.|.. ..+..+++.+.+.|+|+
T Consensus 600 ~~~l~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkpg 650 (703)
T 3v97_A 600 LAWLREANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAG 650 (703)
T ss_dssp HHHHHHCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHHhcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCC
Confidence 221 124589999986554421 24567888888999885
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=4.8e-11 Score=94.78 Aligned_cols=109 Identities=17% Similarity=0.003 Sum_probs=76.4
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
.+-.++..|.+.+.......++++|||+|||||.++..+++.|+ +|+++|+++. |++.+.++ .. ++..+..
T Consensus 65 yvsrg~~Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~--mL~~a~r~----~~--rv~~~~~ 136 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTN--QLVWKLRQ----DD--RVRSMEQ 136 (291)
T ss_dssp SSSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSS--CSCHHHHT----CT--TEEEECS
T ss_pred cccchHHHHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHH--HHHHHHHh----Cc--ccceecc
Confidence 45567778888887765556788999999999999999999987 8999999965 88764332 11 1111221
Q ss_pred CCCCc----CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 129 GFLDA----SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~----~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+... .+....||+|++ |+.+. ++..+++.+++.|+|+
T Consensus 137 ~ni~~l~~~~l~~~~fD~v~~-d~sf~--sl~~vL~e~~rvLkpG 178 (291)
T 3hp7_A 137 YNFRYAEPVDFTEGLPSFASI-DVSFI--SLNLILPALAKILVDG 178 (291)
T ss_dssp CCGGGCCGGGCTTCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTT
T ss_pred cCceecchhhCCCCCCCEEEE-EeeHh--hHHHHHHHHHHHcCcC
Confidence 12111 112224999997 55544 5699999999999996
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.3e-11 Score=97.95 Aligned_cols=107 Identities=11% Similarity=-0.024 Sum_probs=74.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc--ceEEEEEcCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN--CRVMGLTWGF 130 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~--~~~~~l~~~~ 130 (169)
...++..+.... ..++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.+++|++.+++. +++...+..+
T Consensus 203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis--~~~l~~A~~n~~~~gl~~~i~~~~~D~~~ 279 (373)
T 3tm4_A 203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKY--RKHLIGAEMNALAAGVLDKIKFIQGDATQ 279 (373)
T ss_dssp CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESC--HHHHHHHHHHHHHTTCGGGCEEEECCGGG
T ss_pred cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHHHHHcCCCCceEEEECChhh
Confidence 445565555544 45678999999999999999999887 89999999 57999999999999883 4443333322
Q ss_pred CCcCCCCCCCcEEEEcCcCCCC----CCh----HHHHHHHHHhc
Q 030935 131 LDASIFDLNPNIILGADVFYDA----SGK----ICAFEILICSL 166 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~----~~~----~~l~~~l~~~L 166 (169)
. +....+||+|+++.+.... ... ..+++.+++.|
T Consensus 280 ~--~~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l 321 (373)
T 3tm4_A 280 L--SQYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL 321 (373)
T ss_dssp G--GGTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE
T ss_pred C--CcccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc
Confidence 2 2234689999995553321 223 45566666654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.22 E-value=6.2e-11 Score=89.77 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=68.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-------eEEEEcCCCcHHHHHHHHHHHHHhCC------cceEEEEEcCCCCcC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-------NVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVMGLTWGFLDAS 134 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-------~V~~~D~~~~~~~l~~~~~n~~~n~~------~~~~~~l~~~~~~~~ 134 (169)
..++.+|||+|||+|..+..+++... +|+++|++ +.+++.+++|++.++. .+.+. .++....
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~v~~~---~~d~~~~ 152 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERV--KDLVNFSLENIKRDKPELLKIDNFKII---HKNIYQV 152 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESC--HHHHHHHHHHHHHHCGGGGSSTTEEEE---ECCGGGC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCC--HHHHHHHHHHHHHcCccccccCCEEEE---ECChHhc
Confidence 44678999999999999999998753 99999999 5799999999988762 23333 3443332
Q ss_pred -----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 -----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 -----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
....+||+|++...+.+ +++.+.+.|+|+
T Consensus 153 ~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~Lkpg 186 (227)
T 2pbf_A 153 NEEEKKELGLFDAIHVGASASE------LPEILVDLLAEN 186 (227)
T ss_dssp CHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEE
T ss_pred ccccCccCCCcCEEEECCchHH------HHHHHHHhcCCC
Confidence 22358999999888764 347777888874
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.5e-11 Score=101.24 Aligned_cols=97 Identities=13% Similarity=0.025 Sum_probs=72.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-----CCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-----FDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-----~~~~fDlI 143 (169)
++++|||+|||+|.+++.+++.|+ +|+++|++ +.+++.+++|++.|++..++. +..++..... ...+||+|
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s--~~~l~~a~~n~~~n~~~~~v~-~~~~d~~~~~~~~~~~~~~fD~V 293 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKS--PRAIETAKENAKLNGVEDRMK-FIVGSAFEEMEKLQKKGEKFDIV 293 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCGGGEE-EEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCccce-EEECCHHHHHHHHHhhCCCCCEE
Confidence 678999999999999999999876 89999999 579999999999999853222 2333322211 14589999
Q ss_pred EEcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
++..+.|.. ..+..++..+.+.|+|+
T Consensus 294 i~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 328 (396)
T 2as0_A 294 VLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG 328 (396)
T ss_dssp EECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 985444432 34567888888888874
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-11 Score=91.21 Aligned_cols=85 Identities=15% Similarity=-0.044 Sum_probs=67.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCC
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFY 150 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy 150 (169)
+.+|||+|||+|..+..+++. +++|++ +.+++.++++ + +.+...+... .+..+.+||+|++..+++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s--~~~~~~a~~~----~--~~~~~~d~~~--~~~~~~~fD~v~~~~~l~ 113 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK----IGVEPS--ERMAEIARKR----G--VFVLKGTAEN--LPLKDESFDFALMVTTIC 113 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC----EEEESC--HHHHHHHHHT----T--CEEEECBTTB--CCSCTTCEEEEEEESCGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH----hccCCC--HHHHHHHHhc----C--CEEEEccccc--CCCCCCCeeEEEEcchHh
Confidence 789999999999999888765 999999 5699988876 2 3333333222 123345899999999999
Q ss_pred CCCChHHHHHHHHHhccCC
Q 030935 151 DASGKICAFEILICSLFPI 169 (169)
Q Consensus 151 ~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+...+++.+.+.|+|+
T Consensus 114 ~~~~~~~~l~~~~~~L~pg 132 (219)
T 1vlm_A 114 FVDDPERALKEAYRILKKG 132 (219)
T ss_dssp GSSCHHHHHHHHHHHEEEE
T ss_pred hccCHHHHHHHHHHHcCCC
Confidence 9999999999999999985
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=4.9e-11 Score=90.29 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=67.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCC------cceEEEEEcCCCCcC-CCC
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL------NCRVMGLTWGFLDAS-IFD 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~------~~~~~~l~~~~~~~~-~~~ 137 (169)
..++.+|||+|||+|..+..+++. + .+|+++|++ +.+++.+++|+..++. .+.+. .++.... ...
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s--~~~~~~a~~~~~~~~~~~~~~~~v~~~---~~d~~~~~~~~ 149 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI--KELVDDSVNNVRKDDPTLLSSGRVQLV---VGDGRMGYAEE 149 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHCTHHHHTSSEEEE---ESCGGGCCGGG
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCC--HHHHHHHHHHHHhhcccccCCCcEEEE---ECCcccCcccC
Confidence 346789999999999999999886 4 589999999 5699999999988654 23333 3333222 224
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+||+|++..++.+ +++.+.+.|+|+
T Consensus 150 ~~fD~i~~~~~~~~------~~~~~~~~Lkpg 175 (226)
T 1i1n_A 150 APYDAIHVGAAAPV------VPQALIDQLKPG 175 (226)
T ss_dssp CCEEEEEECSBBSS------CCHHHHHTEEEE
T ss_pred CCcCEEEECCchHH------HHHHHHHhcCCC
Confidence 58999998877643 346778888875
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-11 Score=92.53 Aligned_cols=89 Identities=8% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +.+++.+++++..++...++. +..++......
T Consensus 16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~v~-~~~~D~~~~~~- 91 (285)
T 1zq9_A 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD--PRLVAELHKRVQGTPVASKLQ-VLVGDVLKTDL- 91 (285)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTSTTGGGEE-EEESCTTTSCC-
T ss_pred HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECC--HHHHHHHHHHHHhcCCCCceE-EEEcceecccc-
Confidence 44445554445577899999999999999999999999999999 579999999987665532222 33444432212
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
..||+|+++-+.+
T Consensus 92 ~~fD~vv~nlpy~ 104 (285)
T 1zq9_A 92 PFFDTCVANLPYQ 104 (285)
T ss_dssp CCCSEEEEECCGG
T ss_pred hhhcEEEEecCcc
Confidence 2799999854443
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=91.51 Aligned_cols=96 Identities=20% Similarity=0.065 Sum_probs=70.7
Q ss_pred CCeEEEECCCC---CHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC---------cCCC
Q 030935 71 GANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD---------ASIF 136 (169)
Q Consensus 71 ~~~vLElGcGt---Gl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~---------~~~~ 136 (169)
..+|||||||+ |.+...+++. +++|+++|++ +.|++.+++++..+ ..+.+...+..+.. ..+.
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~s--p~~l~~Ar~~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~~d 154 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDID--PMVLTHGRALLAKD-PNTAVFTADVRDPEYILNHPDVRRMID 154 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESS--HHHHHHHHHHHTTC-TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECC--hHHHHHHHHhcCCC-CCeEEEEeeCCCchhhhccchhhccCC
Confidence 36999999999 9887766664 5699999999 67999999988532 22333333222110 0111
Q ss_pred CCCCcEEEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
..+||+|+++.++|+..+ ...+++.+.+.|+||
T Consensus 155 ~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pG 189 (274)
T 2qe6_A 155 FSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPG 189 (274)
T ss_dssp TTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTT
T ss_pred CCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCC
Confidence 138999999999998766 899999999999996
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.19 E-value=1e-10 Score=90.02 Aligned_cols=98 Identities=5% Similarity=-0.153 Sum_probs=67.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHh--------CCc-ceEEEEEcCCCCc-CCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMN--------KLN-CRVMGLTWGFLDA-SIFD 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n--------~~~-~~~~~l~~~~~~~-~~~~ 137 (169)
++.+|||+|||+|.+++.+++.+. +|+++|++ +.+++.+++|++.+ ++. +.+...+..+... ....
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s--~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIR--VQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESC--HHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcC--HHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 567899999999999999999864 79999999 56999999998876 543 3333333222111 1234
Q ss_pred CCCcEEEEcC--cCCCC------CChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGAD--VFYDA------SGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd--~iy~~------~~~~~l~~~l~~~L~p~ 169 (169)
..+|.|+... ..+.. ...+.+++.+.+.|+||
T Consensus 127 ~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkpg 166 (246)
T 2vdv_E 127 GQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEG 166 (246)
T ss_dssp TCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEE
T ss_pred cccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCC
Confidence 5788888542 11100 01268999999999985
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=5e-11 Score=96.31 Aligned_cols=90 Identities=11% Similarity=0.043 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
++.+|||+|||+|.+++. ++.+.+|+++|++ +.+++.+++|++.|++..++. +..++..... .+||+|++ |+.
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s--~~ai~~a~~n~~~n~l~~~v~-~~~~D~~~~~--~~fD~Vi~-dpP 267 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDIN--PHAIELLKKNIKLNKLEHKII-PILSDVREVD--VKGNRVIM-NLP 267 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEESCGGGCC--CCEEEEEE-CCT
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcEE-EEECChHHhc--CCCcEEEE-CCc
Confidence 678999999999999999 8855599999999 679999999999999743322 3334433322 68999998 443
Q ss_pred CCCCChHHHHHHHHHhccCC
Q 030935 150 YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~~~l~~~l~~~L~p~ 169 (169)
+. ...+++.+.+.|+|+
T Consensus 268 ~~---~~~~l~~~~~~L~~g 284 (336)
T 2yx1_A 268 KF---AHKFIDKALDIVEEG 284 (336)
T ss_dssp TT---GGGGHHHHHHHEEEE
T ss_pred Hh---HHHHHHHHHHHcCCC
Confidence 33 347788888888774
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=92.43 Aligned_cols=108 Identities=17% Similarity=-0.008 Sum_probs=73.1
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
+..++..|.+.+.......++++|||||||||.++..+++.|+ +|+++|+++. |++.++++.... ......
T Consensus 18 vsrg~~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~--ml~~a~~~~~~~------~~~~~~ 89 (232)
T 3opn_A 18 VSRGGLKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTN--QLAWKIRSDERV------VVMEQF 89 (232)
T ss_dssp SSTTHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCC--CCCHHHHTCTTE------EEECSC
T ss_pred cCCcHHHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHH--HHHHHHHhCccc------cccccc
Confidence 4456677777777665556788999999999999999999986 9999999975 888776643211 111111
Q ss_pred CC---C-cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FL---D-ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~---~-~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+. . .......||.+.+ |+++.. +..+++.+.+.|+|+
T Consensus 90 ~~~~~~~~~~~~~~~d~~~~-D~v~~~--l~~~l~~i~rvLkpg 130 (232)
T 3opn_A 90 NFRNAVLADFEQGRPSFTSI-DVSFIS--LDLILPPLYEILEKN 130 (232)
T ss_dssp CGGGCCGGGCCSCCCSEEEE-CCSSSC--GGGTHHHHHHHSCTT
T ss_pred eEEEeCHhHcCcCCCCEEEE-EEEhhh--HHHHHHHHHHhccCC
Confidence 11 0 1111113566553 555533 488999999999996
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.4e-11 Score=85.55 Aligned_cols=101 Identities=16% Similarity=0.065 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+...+.+++.......++.+|||+|||+|..+..+++. + .+|+++|+++ +++. ..+++. .++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~---~~~~---------~~~~~~---~~d 70 (180)
T 1ej0_A 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP---MDPI---------VGVDFL---QGD 70 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC---CCCC---------TTEEEE---ESC
T ss_pred HHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc---cccc---------CcEEEE---Ecc
Confidence 44455566555444456789999999999999999887 3 5999999994 3321 122332 233
Q ss_pred CCcC---------CCCCCCcEEEEcCcCCCCCCh-----------HHHHHHHHHhccCC
Q 030935 131 LDAS---------IFDLNPNIILGADVFYDASGK-----------ICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~---------~~~~~fDlIi~sd~iy~~~~~-----------~~l~~~l~~~L~p~ 169 (169)
.... ..+.+||+|++..++++.... ..+++.+.+.|+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g 129 (180)
T 1ej0_A 71 FRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG 129 (180)
T ss_dssp TTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred cccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC
Confidence 3221 334689999998888877665 78899999999985
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-11 Score=93.63 Aligned_cols=98 Identities=17% Similarity=0.009 Sum_probs=67.4
Q ss_pred CCCeEEEECCCCCH----HHHHHHHh-C-----CeEEEEcCCCcHHHHHHHHHHHHH----h------------------
Q 030935 70 SGANVVELGAGTSL----PGLVAAKV-G-----SNVTLTDDSNRIEVLKNMRRVCEM----N------------------ 117 (169)
Q Consensus 70 ~~~~vLElGcGtGl----~~l~~a~~-g-----a~V~~~D~~~~~~~l~~~~~n~~~----n------------------ 117 (169)
++.+|||+|||||- +++.+++. + .+|++||+| ++|++.|++++.. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis--~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~ 182 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDID--TEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPH 182 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESC--HHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECC--HHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCC
Confidence 34689999999998 66666664 3 489999999 5699999987521 0
Q ss_pred CCcce-------EEEEEcCCCCcC-CC-CCCCcEEEEcCcCCCCCC--hHHHHHHHHHhccCC
Q 030935 118 KLNCR-------VMGLTWGFLDAS-IF-DLNPNIILGADVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~-------~~~l~~~~~~~~-~~-~~~fDlIi~sd~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
+.... ...+...+.... .. ..+||+|+|..++.+... ...+++.+++.|+||
T Consensus 183 ~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pg 245 (274)
T 1af7_A 183 EGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 245 (274)
T ss_dssp CSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred CCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCC
Confidence 00000 012333444332 22 358999999998755543 488999999999986
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=88.44 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=67.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh-C-------CeEEEEcCCCcHHHHHHHHHHHHHhC-----C-cceEEEEEcCCCCc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV-G-------SNVTLTDDSNRIEVLKNMRRVCEMNK-----L-NCRVMGLTWGFLDA 133 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~-g-------a~V~~~D~~~~~~~l~~~~~n~~~n~-----~-~~~~~~l~~~~~~~ 133 (169)
..++.+|||+|||+|..+..+++. + .+|+++|++ +.+++.+++|+..++ . .+.+ ..++...
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~--~~~~~~a~~~~~~~~~~~~~~~~v~~---~~~d~~~ 156 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQ--AELVRRSKANLNTDDRSMLDSGQLLI---VEGDGRK 156 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESC--HHHHHHHHHHHHHHHHHHHHHTSEEE---EESCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcC--HHHHHHHHHHHHhcCccccCCCceEE---EECCccc
Confidence 346789999999999999988873 4 489999999 579999999987654 1 2332 3344333
Q ss_pred CCCC-CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 SIFD-LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~-~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.... .+||+|++...+++. .+.+.+.|+|+
T Consensus 157 ~~~~~~~fD~I~~~~~~~~~------~~~~~~~Lkpg 187 (227)
T 1r18_A 157 GYPPNAPYNAIHVGAAAPDT------PTELINQLASG 187 (227)
T ss_dssp CCGGGCSEEEEEECSCBSSC------CHHHHHTEEEE
T ss_pred CCCcCCCccEEEECCchHHH------HHHHHHHhcCC
Confidence 3333 589999998887653 36778888874
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.1e-10 Score=96.03 Aligned_cols=111 Identities=14% Similarity=0.015 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC----------------------------------------Ce
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG----------------------------------------SN 94 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g----------------------------------------a~ 94 (169)
...|+..|.......++..|||.|||+|.+.+.++..+ .+
T Consensus 180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 45678777776666678899999999999999988764 36
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCC----CCChHHHHHHHHHhccC
Q 030935 95 VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD----ASGKICAFEILICSLFP 168 (169)
Q Consensus 95 V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~----~~~~~~l~~~l~~~L~p 168 (169)
|+++|++ +.+++.++.|++.+++...+. +..++......+.+||+|+++.+... ...+..+++.+.+.|++
T Consensus 260 V~GvDid--~~ai~~Ar~Na~~~gl~~~i~-~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 260 IYGYDID--EESIDIARENAEIAGVDEYIE-FNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp EEEEESC--HHHHHHHHHHHHHHTCGGGEE-EEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECC--HHHHHHHHHHHHHcCCCCceE-EEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 9999999 679999999999999863322 34444433333458999998666432 13455667766666654
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=92.59 Aligned_cols=108 Identities=14% Similarity=-0.020 Sum_probs=73.8
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++..++..+ ...++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++.. +. +..++
T Consensus 106 ~s~l~~~~l----~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s--~~~l~~a~~~~~~~g~~~-v~-~~~~D 177 (315)
T 1ixk_A 106 SSMYPPVAL----DPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVD--ENRLRETRLNLSRLGVLN-VI-LFHSS 177 (315)
T ss_dssp HHHHHHHHH----CCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSC--HHHHHHHHHHHHHHTCCS-EE-EESSC
T ss_pred HHHHHHHHh----CCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHHHHhCCCe-EE-EEECC
Confidence 444444444 2346789999999999999999875 2589999999 569999999999988742 22 33333
Q ss_pred CCcC-CCCCCCcEEEEcCcC------CCCCC----------------hHHHHHHHHHhccCC
Q 030935 131 LDAS-IFDLNPNIILGADVF------YDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~-~~~~~fDlIi~sd~i------y~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
.... ..+.+||+|++.-+. ....+ ...+++.+.+.|+||
T Consensus 178 ~~~~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG 239 (315)
T 1ixk_A 178 SLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG 239 (315)
T ss_dssp GGGGGGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhcccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3221 134589999984332 11111 157889999999985
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-10 Score=89.24 Aligned_cols=93 Identities=11% Similarity=-0.051 Sum_probs=71.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~i 149 (169)
...+|||||||+|.+++... .+.+++++|++ +.+++.++.++..++.+.++ .+.+......+.+||+|++..++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId--~~~i~~ar~~~~~~g~~~~~---~v~D~~~~~~~~~~DvvLllk~l 178 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER-GIASVWGCDIH--QGLGDVITPFAREKDWDFTF---ALQDVLCAPPAEAGDLALIFKLL 178 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT-TCSEEEEEESB--HHHHHHHHHHHHHTTCEEEE---EECCTTTSCCCCBCSEEEEESCH
T ss_pred CCCeEEEecCCccHHHHHhc-cCCeEEEEeCC--HHHHHHHHHHHHhcCCCceE---EEeecccCCCCCCcchHHHHHHH
Confidence 46699999999999999888 55599999999 67999999999998876543 34555445566699999999999
Q ss_pred CCCCCh--HHHHHHHHHhccCC
Q 030935 150 YDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 150 y~~~~~--~~l~~~l~~~L~p~ 169 (169)
++.+.. ...+ .+.+.|+|.
T Consensus 179 h~LE~q~~~~~~-~ll~aL~~~ 199 (253)
T 3frh_A 179 PLLEREQAGSAM-ALLQSLNTP 199 (253)
T ss_dssp HHHHHHSTTHHH-HHHHHCBCS
T ss_pred HHhhhhchhhHH-HHHHHhcCC
Confidence 866333 2344 666677663
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.5e-11 Score=96.71 Aligned_cols=98 Identities=9% Similarity=-0.042 Sum_probs=67.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHh--CC---cceEEEEEcCCCCcCCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN--KL---NCRVMGLTWGFLDASIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n--~~---~~~~~~l~~~~~~~~~~~~~fDl 142 (169)
++++|||||||+|.+++.+++. +.+|+++|++ +.+++.+++|+... ++ .+++...++........+.+||+
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis--~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEID--KMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 4679999999999999999986 3599999999 57999999998652 22 23333222221111222458999
Q ss_pred EEEcCc--CCCCCC--hHHHHHHHHHhccCC
Q 030935 143 ILGADV--FYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~--iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
|++.-. ...... ...+++.+.+.|+|+
T Consensus 198 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg 228 (334)
T 1xj5_A 198 VIVDSSDPIGPAKELFEKPFFQSVARALRPG 228 (334)
T ss_dssp EEECCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred EEECCCCccCcchhhhHHHHHHHHHHhcCCC
Confidence 997322 221121 478999999999985
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7e-11 Score=90.90 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=62.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh------CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCC-C
Q 030935 70 SGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFD-L 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~------ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~-~ 138 (169)
++.+|||||||+|..++.+++. +++|+++|+++. +++.++. ...++++. .++.... ... .
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~--~l~~a~~----~~~~v~~~---~gD~~~~~~l~~~~~~ 151 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLS--RCQIPAS----DMENITLH---QGDCSDLTTFEHLREM 151 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCT--TCCCCGG----GCTTEEEE---ECCSSCSGGGGGGSSS
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChH--HHHHHhc----cCCceEEE---ECcchhHHHHHhhccC
Confidence 4679999999999999999987 569999999964 8877661 12233333 3333221 122 3
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHH-hccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILIC-SLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~-~L~p~ 169 (169)
+||+|++... + ..++.+++.+.+ .|+||
T Consensus 152 ~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpG 180 (236)
T 2bm8_A 152 AHPLIFIDNA-H--ANTFNIMKWAVDHLLEEG 180 (236)
T ss_dssp CSSEEEEESS-C--SSHHHHHHHHHHHTCCTT
T ss_pred CCCEEEECCc-h--HhHHHHHHHHHHhhCCCC
Confidence 7999997544 3 478889999996 99996
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-10 Score=93.79 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=80.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC----------------------------------------
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS---------------------------------------- 93 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga---------------------------------------- 93 (169)
-...||.-|.......++..+||.+||+|.+.+.++..+.
T Consensus 178 l~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~ 257 (384)
T 3ldg_A 178 IKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQL 257 (384)
T ss_dssp CCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred CcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCc
Confidence 3466777777665555778999999999999999887643
Q ss_pred eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCC----CChHHHHHHHHHhccC
Q 030935 94 NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SGKICAFEILICSLFP 168 (169)
Q Consensus 94 ~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p 168 (169)
+|+++|++ +.+++.+++|++.+++...+. +..++......+.+||+|+++.+.... ..+..+++.+.+.|++
T Consensus 258 ~v~GvDid--~~al~~Ar~Na~~~gl~~~I~-~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~ 333 (384)
T 3ldg_A 258 DISGFDFD--GRMVEIARKNAREVGLEDVVK-LKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP 333 (384)
T ss_dssp CEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECC--HHHHHHHHHHHHHcCCCCceE-EEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh
Confidence 49999999 679999999999999864332 344444333334589999985554321 3456677777777664
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.8e-10 Score=85.89 Aligned_cols=113 Identities=13% Similarity=-0.022 Sum_probs=69.5
Q ss_pred eeecch-HHHHHHHHHhccC---CCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcc
Q 030935 49 LFVWPC-SVILAEYVWQQRY---RFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNC 121 (169)
Q Consensus 49 ~~~W~~-~~~La~~l~~~~~---~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~ 121 (169)
.+.|.. -..++..+..... ..+|.+|||+|||+|..+..+++. + .+|+++|++ +.+++.+.+.++.. .++
T Consensus 51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s--~~~l~~l~~~a~~r-~nv 127 (232)
T 3id6_C 51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFS--PRVVRELLLVAQRR-PNI 127 (232)
T ss_dssp EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECC--HHHHHHHHHHHHHC-TTE
T ss_pred hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECc--HHHHHHHHHHhhhc-CCe
Confidence 445543 2245556655433 557889999999999999988875 3 399999999 55776554444332 223
Q ss_pred eEEEEEcCCCCcC----CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 122 RVMGLTWGFLDAS----IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 122 ~~~~l~~~~~~~~----~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+. .++...+ ....+||+|++.-.. +...+.+.+.+.+.|+|+
T Consensus 128 ~~i---~~Da~~~~~~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpG 174 (232)
T 3id6_C 128 FPL---LADARFPQSYKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVN 174 (232)
T ss_dssp EEE---ECCTTCGGGTTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEEEE
T ss_pred EEE---EcccccchhhhccccceEEEEecCCC--hhHHHHHHHHHHHhCCCC
Confidence 332 2332221 123589999975332 333344556666699985
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.8e-10 Score=93.91 Aligned_cols=111 Identities=7% Similarity=-0.034 Sum_probs=78.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC----------------------------------------e
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS----------------------------------------N 94 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga----------------------------------------~ 94 (169)
...||.-|.......++..|||.+||+|.+.+.+|..+. +
T Consensus 186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 265 (393)
T 3k0b_A 186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN 265 (393)
T ss_dssp CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence 456777666655555678999999999999999887643 4
Q ss_pred EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCC----CChHHHHHHHHHhccC
Q 030935 95 VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDA----SGKICAFEILICSLFP 168 (169)
Q Consensus 95 V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~----~~~~~l~~~l~~~L~p 168 (169)
|+++|++ +.+++.++.|++.+++...+. +..++......+.+||+|+++.+.... ..+..+++.+.+.|++
T Consensus 266 V~GvDid--~~al~~Ar~Na~~~gl~~~I~-~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~ 340 (393)
T 3k0b_A 266 IIGGDID--ARLIEIAKQNAVEAGLGDLIT-FRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR 340 (393)
T ss_dssp EEEEESC--HHHHHHHHHHHHHTTCTTCSE-EEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECC--HHHHHHHHHHHHHcCCCCceE-EEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc
Confidence 9999999 679999999999998863222 333443333334589999986554321 3355567666666654
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.3e-10 Score=91.12 Aligned_cols=107 Identities=10% Similarity=-0.065 Sum_probs=75.1
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--C-CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWG 129 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~ 129 (169)
++..++..+ ...++.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+++. +.+. .+
T Consensus 71 ~s~l~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~--~~~l~~~~~~~~~~g~~~v~~~---~~ 141 (274)
T 3ajd_A 71 SSMIPPIVL----NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEIS--KTRTKALKSNINRMGVLNTIII---NA 141 (274)
T ss_dssp GGGHHHHHH----CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEE---ES
T ss_pred HHHHHHHHh----CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCC--HHHHHHHHHHHHHhCCCcEEEE---eC
Confidence 344444444 2346789999999999999988873 4 589999999 56999999999998874 3332 23
Q ss_pred CCCcCC-----CCCCCcEEEEcCcCCCC------------------CChHHHHHHHHHhccCC
Q 030935 130 FLDASI-----FDLNPNIILGADVFYDA------------------SGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~-----~~~~fDlIi~sd~iy~~------------------~~~~~l~~~l~~~L~p~ 169 (169)
+..... ...+||+|++.-+.... .....+++.+.+.|+||
T Consensus 142 D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 204 (274)
T 3ajd_A 142 DMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKD 204 (274)
T ss_dssp CHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEE
T ss_pred ChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 322211 14589999975333211 45578999999999985
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-11 Score=96.83 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcH-------HHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCC--
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRI-------EVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFD-- 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~-------~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~-- 137 (169)
++.+|||+|||+|..++.+++.|.+|+++|++ + ++++.+++|++.|++..++. +..++.... ..+
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s--~~~~~ll~~~l~~a~~n~~~~~~~~ri~-~~~~d~~~~l~~~~~~~ 159 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQH--PAVACLLSDGIRRALLNPETQDTAARIN-LHFGNAAEQMPALVKTQ 159 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECC--HHHHHHHHHHHHHHHHSHHHHHHHTTEE-EEESCHHHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECC--hhhhHHHHHHHHHHHhHHHhhCCccCeE-EEECCHHHHHHhhhccC
Confidence 56799999999999999999999999999999 6 69999999998887643222 333443221 122
Q ss_pred CCCcEEEEcCcCCCC
Q 030935 138 LNPNIILGADVFYDA 152 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~ 152 (169)
.+||+|++ |+.|..
T Consensus 160 ~~fD~V~~-dP~~~~ 173 (258)
T 2r6z_A 160 GKPDIVYL-DPMYPE 173 (258)
T ss_dssp CCCSEEEE-CCCC--
T ss_pred CCccEEEE-CCCCCC
Confidence 58999997 455543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=91.83 Aligned_cols=96 Identities=16% Similarity=0.001 Sum_probs=68.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHh--CCc-ceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMN--KLN-CRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n--~~~-~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
.+++|||||||+|.++..+++. + .+|+++|++ +.+++.+++|+... +.. .++. +..++.... ..+.+||+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid--~~~v~~ar~~~~~~~~~~~~~rv~-v~~~D~~~~l~~~~~~fD~ 151 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDID--GKVIEYSKKFLPSIAGKLDDPRVD-VQVDDGFMHIAKSENQYDV 151 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC--HHHHHHHHHHCHHHHTTTTSTTEE-EEESCSHHHHHTCCSCEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECC--HHHHHHHHHHhHhhccccCCCceE-EEECcHHHHHhhCCCCeeE
Confidence 4679999999999999999987 4 489999999 67999999987542 231 2222 334443221 12458999
Q ss_pred EEEcCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
|++ |+.+.... ...+++.+++.|+|+
T Consensus 152 Ii~-d~~~~~~~~~~l~~~~~~~~~~~~L~pg 182 (275)
T 1iy9_A 152 IMV-DSTEPVGPAVNLFTKGFYAGIAKALKED 182 (275)
T ss_dssp EEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred EEE-CCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 998 66553221 368999999999985
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-11 Score=93.49 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=75.3
Q ss_pred CCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
..+|||||||+|.+++.++.. .++++++|++ +.+++.++.|+..+++..+ +.+.+......+.+||+|++..+
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId--~~~le~a~~~l~~~g~~~~---~~v~D~~~~~p~~~~DvaL~lkt 207 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDID--ARLVGFVDEALTRLNVPHR---TNVADLLEDRLDEPADVTLLLKT 207 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESB--HHHHHHHHHHHHHTTCCEE---EEECCTTTSCCCSCCSEEEETTC
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCC--HHHHHHHHHHHHhcCCCce---EEEeeecccCCCCCcchHHHHHH
Confidence 559999999999999988875 3499999999 5799999999999998754 45566656667779999999999
Q ss_pred CCCCCCh--HHHHHHHHHhccCC
Q 030935 149 FYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+++.+.. ..++ .+.+.|+|+
T Consensus 208 i~~Le~q~kg~g~-~ll~aL~~~ 229 (281)
T 3lcv_B 208 LPCLETQQRGSGW-EVIDIVNSP 229 (281)
T ss_dssp HHHHHHHSTTHHH-HHHHHSSCS
T ss_pred HHHhhhhhhHHHH-HHHHHhCCC
Confidence 9876444 3455 788888774
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=95.92 Aligned_cols=92 Identities=16% Similarity=0.056 Sum_probs=68.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHh---------------CCcceEEEEEcCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN---------------KLNCRVMGLTWGFLD 132 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n---------------~~~~~~~~l~~~~~~ 132 (169)
++.+|||+|||+|..|+.+++. ++ +|+++|++ +++++.+++|++.| ++.. ..+..++..
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~--~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~--i~v~~~Da~ 122 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDIS--EDAYELMKRNVMLNFDGELRESKGRAILKGEKT--IVINHDDAN 122 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESC--HHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE--EEEEESCHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECC--HHHHHHHHHHHHHhcccccccccccccccCCCc--eEEEcCcHH
Confidence 5789999999999999999987 54 89999999 57999999999999 6652 223344432
Q ss_pred cCC--CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 133 ASI--FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~--~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
... ...+||+|+ .|+.+. ...++....+.|+|+
T Consensus 123 ~~~~~~~~~fD~I~-lDP~~~---~~~~l~~a~~~lk~g 157 (378)
T 2dul_A 123 RLMAERHRYFHFID-LDPFGS---PMEFLDTALRSAKRR 157 (378)
T ss_dssp HHHHHSTTCEEEEE-ECCSSC---CHHHHHHHHHHEEEE
T ss_pred HHHHhccCCCCEEE-eCCCCC---HHHHHHHHHHhcCCC
Confidence 211 134799999 477443 467777777777763
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-10 Score=91.53 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=53.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
+..+..++...... .+.+|||+|||+|.+++.+|+.+.+|+++|++ +.+++.+++|++.|++.
T Consensus 199 ~~~l~~~~~~~~~~-~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~--~~ai~~a~~n~~~ng~~ 261 (369)
T 3bt7_A 199 NIQMLEWALDVTKG-SKGDLLELYCGNGNFSLALARNFDRVLATEIA--KPSVAAAQYNIAANHID 261 (369)
T ss_dssp HHHHHHHHHHHTTT-CCSEEEEESCTTSHHHHHHGGGSSEEEEECCC--HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhc-CCCEEEEccCCCCHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHHcCCC
Confidence 46677777665433 36789999999999999999977799999999 67999999999999874
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.8e-11 Score=93.36 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=65.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHH---h--CCcceEEEEEcCCCCcCC---CCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM---N--KLNCRVMGLTWGFLDASI---FDLN 139 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~---n--~~~~~~~~l~~~~~~~~~---~~~~ 139 (169)
++++|||||||+|.++..+++. ..+|+++|++ +.+++.+++++.. . ...+++. .++..... .+.+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~a~~~~~~~~~~~~~~~v~~~---~~D~~~~~~~~~~~~ 169 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDID--GEVMEQSKQHFPQISRSLADPRATVR---VGDGLAFVRQTPDNT 169 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEEEE---ESCHHHHHHSSCTTC
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHhHHhhcccCCCcEEEE---ECcHHHHHHhccCCc
Confidence 5679999999999999999986 3489999999 5799999998742 1 1223333 33332211 3468
Q ss_pred CcEEEEcCcCCCCCC--h--HHHHHHHHHhccCC
Q 030935 140 PNIILGADVFYDASG--K--ICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~iy~~~~--~--~~l~~~l~~~L~p~ 169 (169)
||+|++.-..+.... + ..+++.+++.|+|+
T Consensus 170 fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg 203 (304)
T 3bwc_A 170 YDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD 203 (304)
T ss_dssp EEEEEEECC---------CCHHHHHHHHHHEEEE
T ss_pred eeEEEECCCCccccchhhhHHHHHHHHHHhcCCC
Confidence 999998443332111 1 68899999999985
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-10 Score=88.18 Aligned_cols=95 Identities=5% Similarity=-0.129 Sum_probs=65.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH------hCC-cceEEEEEcCCCCcC----CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM------NKL-NCRVMGLTWGFLDAS----IF 136 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~------n~~-~~~~~~l~~~~~~~~----~~ 136 (169)
++.+|||||||+|..++.+|+.. .+|+++|++ +.|++.++++++. ++. ++++. .++.... +.
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis--~~~l~~A~~~~~~l~~~~~~~~~nv~~~---~~d~~~~l~~~~~ 120 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIR--VKVSDYVQDRIRALRAAPAGGFQNIACL---RSNAMKHLPNFFY 120 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESC--HHHHHHHHHHHHHHHHSTTCCCTTEEEE---ECCTTTCHHHHCC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECC--HHHHHHHHHHHHHHHHHHhcCCCeEEEE---ECcHHHhhhhhCC
Confidence 45689999999999999999873 589999999 5699999988764 233 23333 3333221 23
Q ss_pred CCCCcEEEEcCcCCCCC--------ChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDAS--------GKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~--------~~~~l~~~l~~~L~p~ 169 (169)
+..||.|+..-.-.+.. ..+.+++.+.+.|+||
T Consensus 121 ~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpG 161 (235)
T 3ckk_A 121 KGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVG 161 (235)
T ss_dssp TTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEE
T ss_pred CcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCC
Confidence 56899998642211111 1257999999999985
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=91.11 Aligned_cols=95 Identities=7% Similarity=-0.099 Sum_probs=71.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-------CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG-------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g-------a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDl 142 (169)
++.+|||+|||+|.+++.+++.. .+++++|++ +.+++.++.|+..+++... +..++........+||+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~--~~~~~~a~~n~~~~g~~~~---i~~~D~l~~~~~~~fD~ 204 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVD--DLLISLALVGADLQRQKMT---LLHQDGLANLLVDPVDV 204 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESC--HHHHHHHHHHHHHHTCCCE---EEESCTTSCCCCCCEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECC--HHHHHHHHHHHHhCCCCce---EEECCCCCccccCCccE
Confidence 56799999999999999888753 589999999 5799999999998887544 34455444444568999
Q ss_pred EEEcCcCCCCCC-----------------h-HHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASG-----------------K-ICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~-----------------~-~~l~~~l~~~L~p~ 169 (169)
|+++.++.+... . ..+++.+.+.|+|+
T Consensus 205 Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~g 249 (344)
T 2f8l_A 205 VISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPG 249 (344)
T ss_dssp EEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEE
T ss_pred EEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCC
Confidence 999888522211 1 25788888888874
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=89.32 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=62.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIF 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~ 136 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++ ++++.+++++.. ..+++ +..++... ...
T Consensus 38 i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~--~li~~a~~~~~~-~~~v~---vi~gD~l~~~~~ 111 (295)
T 3gru_A 38 FVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDK--SLEPYANKLKEL-YNNIE---IIWGDALKVDLN 111 (295)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCG--GGHHHHHHHHHH-CSSEE---EEESCTTTSCGG
T ss_pred HHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCH--HHHHHHHHHhcc-CCCeE---EEECchhhCCcc
Confidence 344455444555788999999999999999999988999999995 599999999872 22333 33444433 233
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
..+||.|+++-+.|
T Consensus 112 ~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 112 KLDFNKVVANLPYQ 125 (295)
T ss_dssp GSCCSEEEEECCGG
T ss_pred cCCccEEEEeCccc
Confidence 34799999874433
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.09 E-value=2.4e-10 Score=88.60 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=68.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
...+.+++..... .++.+|||+|||+|..+..+++. +.+|+++|++ +.+++.++++. ..+.+...++.+.
T Consensus 71 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s--~~~~~~a~~~~----~~~~~~~~d~~~~- 142 (269)
T 1p91_A 71 RDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVS--KVAIKAAAKRY----PQVTFCVASSHRL- 142 (269)
T ss_dssp HHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESC--HHHHHHHHHHC----TTSEEEECCTTSC-
T ss_pred HHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCC--HHHHHHHHHhC----CCcEEEEcchhhC-
Confidence 3445555544321 35779999999999999999886 6799999999 56999888764 2233333333221
Q ss_pred cCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 133 ASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..+.+||+|++..+ ..+++.+.+.|+|+
T Consensus 143 -~~~~~~fD~v~~~~~-------~~~l~~~~~~L~pg 171 (269)
T 1p91_A 143 -PFSDTSMDAIIRIYA-------PCKAEELARVVKPG 171 (269)
T ss_dssp -SBCTTCEEEEEEESC-------CCCHHHHHHHEEEE
T ss_pred -CCCCCceeEEEEeCC-------hhhHHHHHHhcCCC
Confidence 233458999998765 23578888888885
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-10 Score=89.78 Aligned_cols=87 Identities=15% Similarity=0.123 Sum_probs=61.5
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFD 137 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~ 137 (169)
++.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +.+++.+++|+..++.. +++. .++.... ..
T Consensus 31 ~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~--~~~~~~a~~~~~~~~~~~v~~~---~~D~~~~-~~ 104 (299)
T 2h1r_A 31 LDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDID--SRMISEVKKRCLYEGYNNLEVY---EGDAIKT-VF 104 (299)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSC--HHHHHHHHHHHHHTTCCCEEC-------CCSS-CC
T ss_pred HHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECC--HHHHHHHHHHHHHcCCCceEEE---ECchhhC-Cc
Confidence 3444444444577899999999999999999998899999999 57999999999877652 3333 3333221 22
Q ss_pred CCCcEEEEcCcCCCC
Q 030935 138 LNPNIILGADVFYDA 152 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~ 152 (169)
.+||+|+++ +.|+.
T Consensus 105 ~~~D~Vv~n-~py~~ 118 (299)
T 2h1r_A 105 PKFDVCTAN-IPYKI 118 (299)
T ss_dssp CCCSEEEEE-CCGGG
T ss_pred ccCCEEEEc-CCccc
Confidence 389999985 45543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=94.19 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=67.3
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..++.+|||+|||+|..+..+++... +++++|++ .++. +.+++..+...++. +..++...+. + +||+|++
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~--~~~~~~~~~~~~v~-~~~~d~~~~~-p-~~D~v~~ 253 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA---EVVA--RHRLDAPDVAGRWK-VVEGDFLREV-P-HADVHVL 253 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH---HHHT--TCCCCCGGGTTSEE-EEECCTTTCC-C-CCSEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH---HHhh--cccccccCCCCCeE-EEecCCCCCC-C-CCcEEEE
Confidence 33567999999999999999988654 78888884 3544 33333233322222 3344443333 3 8999999
Q ss_pred cCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 146 ADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+.++|+..+. ..+++.++++|+|+
T Consensus 254 ~~vlh~~~d~~~~~~L~~~~~~Lkpg 279 (348)
T 3lst_A 254 KRILHNWGDEDSVRILTNCRRVMPAH 279 (348)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHTCCTT
T ss_pred ehhccCCCHHHHHHHHHHHHHhcCCC
Confidence 9999988777 69999999999996
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.3e-11 Score=92.17 Aligned_cols=95 Identities=8% Similarity=-0.113 Sum_probs=62.0
Q ss_pred CCCeEEEECCCCCHHHHHHHH--hCCeEEEEcCCCcHHHHHHH---HHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAK--VGSNVTLTDDSNRIEVLKNM---RRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~--~ga~V~~~D~~~~~~~l~~~---~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
++.+|||||||+|..++.+++ .+++|+++|+++ +.|++.+ +++++.+++. +.+ ..++.... ....+|.|
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~-~~ml~~A~~A~~~~~~~~~~~v~~---~~~d~~~l-~~~~~d~v 98 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVK-ENLFDISKKIIKKPSKGGLSNVVF---VIAAAESL-PFELKNIA 98 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCC-GGGHHHHHHHTSCGGGTCCSSEEE---ECCBTTBC-CGGGTTCE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCH-HHHHHHHHHHHHHHHHcCCCCeEE---EEcCHHHh-hhhccCeE
Confidence 567999999999999999985 456899999995 2477666 7777766664 333 33333221 11123544
Q ss_pred EEcCcCCCC--------CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA--------SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~--------~~~~~l~~~l~~~L~p~ 169 (169)
.+-.+.|.. ...+.+++.+.+.||||
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpG 132 (225)
T 3p2e_A 99 DSISILFPWGTLLEYVIKPNRDILSNVADLAKKE 132 (225)
T ss_dssp EEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEE
T ss_pred EEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCC
Confidence 443333321 23456899999999996
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=92.61 Aligned_cols=92 Identities=20% Similarity=0.203 Sum_probs=66.2
Q ss_pred CeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCc---CCCCCCCcEEEE
Q 030935 72 ANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA---SIFDLNPNIILG 145 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~---~~~~~~fDlIi~ 145 (169)
.+|||||||+|.++..+++. +.+|+++|++ +.+++.+++++..+. ..++ +..++... ...+.+||+|++
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEid--p~vi~~Ar~~~~~~~~~rv~---v~~~Da~~~l~~~~~~~fDvIi~ 165 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELD--AELARLSREWFDIPRAPRVK---IRVDDARMVAESFTPASRDVIIR 165 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESC--HHHHHHHHHHSCCCCTTTEE---EEESCHHHHHHTCCTTCEEEEEE
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECC--HHHHHHHHHhccccCCCceE---EEECcHHHHHhhccCCCCCEEEE
Confidence 49999999999999999983 5699999999 679999999886542 2233 33444322 223468999997
Q ss_pred cCcCCC---CCC--hHHHHHHHHHhccCC
Q 030935 146 ADVFYD---ASG--KICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~---~~~--~~~l~~~l~~~L~p~ 169 (169)
|+... ... ...+++.+++.|+|+
T Consensus 166 -D~~~~~~~~~~L~t~efl~~~~r~Lkpg 193 (317)
T 3gjy_A 166 -DVFAGAITPQNFTTVEFFEHCHRGLAPG 193 (317)
T ss_dssp -CCSTTSCCCGGGSBHHHHHHHHHHEEEE
T ss_pred -CCCCccccchhhhHHHHHHHHHHhcCCC
Confidence 43322 112 278999999999985
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-10 Score=93.54 Aligned_cols=111 Identities=10% Similarity=-0.041 Sum_probs=77.0
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+++..++..+. ..++.+|||+|||+|..+..+++.+ .+|+++|+++. +++.+++|++.+++.+.+...+...
T Consensus 233 ~~s~~~~~~l~----~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~--~l~~~~~~~~~~g~~~~~~~~D~~~ 306 (429)
T 1sqg_A 233 ASAQGCMTWLA----PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDNLKRLGMKATVKQGDGRY 306 (429)
T ss_dssp HHHHTHHHHHC----CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHHHHHTTCCCEEEECCTTC
T ss_pred HHHHHHHHHcC----CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHHHHHcCCCeEEEeCchhh
Confidence 34555555442 3467899999999999999999875 59999999965 9999999999998876544333332
Q ss_pred CCcCCCCCCCcEEEEcCc------CCCCCCh----------------HHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADV------FYDASGK----------------ICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~------iy~~~~~----------------~~l~~~l~~~L~p~ 169 (169)
......+.+||+|++.-+ +....+. ..+++.+.+.|+||
T Consensus 307 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpG 367 (429)
T 1sqg_A 307 PSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG 367 (429)
T ss_dssp THHHHTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE
T ss_pred chhhcccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 211122358999996322 2222222 47788888889885
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-10 Score=96.45 Aligned_cols=88 Identities=14% Similarity=0.138 Sum_probs=64.3
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~ 130 (169)
.++..++.|...... +|.+|||+|||+|..++.+++.+++|+++|++ +.+++.+++|++.+ ++. + ..+..++
T Consensus 78 at~e~vA~~~a~~l~--~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s--~~~l~~Ar~N~~~~~~gl~-~-i~~i~~D 151 (410)
T 3ll7_A 78 SSGAVTSSYKSRFIR--EGTKVVDLTGGLGIDFIALMSKASQGIYIERN--DETAVAARHNIPLLLNEGK-D-VNILTGD 151 (410)
T ss_dssp SCCHHHHHHGGGGSC--TTCEEEESSCSSSHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHSCTTC-E-EEEEESC
T ss_pred cCHHHHHHHHHHhcC--CCCEEEEeCCCchHHHHHHHhcCCEEEEEECC--HHHHHHHHHhHHHhccCCC-c-EEEEECc
Confidence 345566666443221 38899999999999999999999999999999 67999999999988 762 2 2244454
Q ss_pred CCcCCC---CCCCcEEEEc
Q 030935 131 LDASIF---DLNPNIILGA 146 (169)
Q Consensus 131 ~~~~~~---~~~fDlIi~s 146 (169)
...... ..+||+|++.
T Consensus 152 a~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 152 FKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp GGGSHHHHHHHCCSEEEEC
T ss_pred HHHhhhhccCCCceEEEEC
Confidence 433211 2489999974
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-09 Score=91.76 Aligned_cols=108 Identities=12% Similarity=0.003 Sum_probs=74.5
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--C-CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEc
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTW 128 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~ 128 (169)
+++..++..+ ...++.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+++. +.+ ..
T Consensus 246 ~~s~l~~~~l----~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s--~~~l~~~~~~~~~~g~~~v~~---~~ 316 (450)
T 2yxl_A 246 EASAVASIVL----DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVD--KMRMKRLKDFVKRMGIKIVKP---LV 316 (450)
T ss_dssp HHHHHHHHHH----CCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSC--HHHHHHHHHHHHHTTCCSEEE---EC
T ss_pred chhHHHHHhc----CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCC--HHHHHHHHHHHHHcCCCcEEE---EE
Confidence 3445555544 2346789999999999999998885 3 589999999 56999999999998874 333 33
Q ss_pred CCCCcC---CCCCCCcEEEEc------CcCCCCCCh----------------HHHHHHHHHhccCC
Q 030935 129 GFLDAS---IFDLNPNIILGA------DVFYDASGK----------------ICAFEILICSLFPI 169 (169)
Q Consensus 129 ~~~~~~---~~~~~fDlIi~s------d~iy~~~~~----------------~~l~~~l~~~L~p~ 169 (169)
++.... ..+.+||+|++. .++....+. ..+++.+.+.|+||
T Consensus 317 ~D~~~~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 382 (450)
T 2yxl_A 317 KDARKAPEIIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPG 382 (450)
T ss_dssp SCTTCCSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred cChhhcchhhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 333222 222579999962 223322222 57888899999885
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2e-10 Score=94.79 Aligned_cols=93 Identities=9% Similarity=-0.029 Sum_probs=70.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcce-EEEEEcCCCCcC---CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-VMGLTWGFLDAS---IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~-~~~l~~~~~~~~---~~~~~fDl 142 (169)
+|.+|||++||+|..|+.+++. |+ +|+++|++ +.+++.+++|++.|++..+ +. ...++.... ....+||+
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~--~~av~~~~~N~~~Ngl~~~~v~-v~~~Da~~~l~~~~~~~fD~ 128 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDIS--SKAIEIMKENFKLNNIPEDRYE-IHGMEANFFLRKEWGFGFDY 128 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSC--HHHHHHHHHHHHHTTCCGGGEE-EECSCHHHHHHSCCSSCEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHhCCCCceEE-EEeCCHHHHHHHhhCCCCcE
Confidence 4679999999999999999985 54 89999999 6799999999999998643 33 334443221 12348999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|+. |+ | .....+++...+.|+|+
T Consensus 129 V~l-DP-~--g~~~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 129 VDL-DP-F--GTPVPFIESVALSMKRG 151 (392)
T ss_dssp EEE-CC-S--SCCHHHHHHHHHHEEEE
T ss_pred EEE-CC-C--cCHHHHHHHHHHHhCCC
Confidence 997 65 4 33467888888888764
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-10 Score=84.15 Aligned_cols=79 Identities=14% Similarity=-0.013 Sum_probs=59.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||+|||+|..+..+ +.+|+++|+++. .+.+...+..+ .+..+.+||+|+++.+
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------------~~~~~~~d~~~--~~~~~~~fD~v~~~~~ 124 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------------DPRVTVCDMAQ--VPLEDESVDVAVFCLS 124 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------------STTEEESCTTS--CSCCTTCEEEEEEESC
T ss_pred CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------------CceEEEecccc--CCCCCCCEeEEEEehh
Confidence 35679999999999998876 368999999963 22333232222 1233458999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++ .+...+++.+.+.|+|+
T Consensus 125 l~~-~~~~~~l~~~~~~L~~g 144 (215)
T 2zfu_A 125 LMG-TNIRDFLEEANRVLKPG 144 (215)
T ss_dssp CCS-SCHHHHHHHHHHHEEEE
T ss_pred ccc-cCHHHHHHHHHHhCCCC
Confidence 974 88899999999999985
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=92.08 Aligned_cols=96 Identities=13% Similarity=0.008 Sum_probs=66.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH--hCC-cceEEEEEcCCCCc--CCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM--NKL-NCRVMGLTWGFLDA--SIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~--n~~-~~~~~~l~~~~~~~--~~~~~~fDl 142 (169)
++++|||||||+|.++..+++.. .+|+++|++ +.+++.+++|+.. +++ ..++. +..++... ...+.+||+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~ar~~~~~~~~~~~~~rv~-v~~~Da~~~l~~~~~~fD~ 171 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEID--EDVIQVSKKFLPGMAIGYSSSKLT-LHVGDGFEFMKQNQDAFDV 171 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEE-EEESCHHHHHHTCSSCEEE
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHhHHhhcccCCCcEE-EEECcHHHHHhhCCCCceE
Confidence 56799999999999999999874 589999999 6799999999765 232 11222 33344322 112458999
Q ss_pred EEEcCcCCCCC-----ChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDAS-----GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~-----~~~~l~~~l~~~L~p~ 169 (169)
|++ |...... ....+++.+++.|+|+
T Consensus 172 Ii~-d~~~~~~~~~~l~~~~~l~~~~~~Lkpg 202 (304)
T 2o07_A 172 IIT-DSSDPMGPAESLFKESYYQLMKTALKED 202 (304)
T ss_dssp EEE-ECC-----------CHHHHHHHHHEEEE
T ss_pred EEE-CCCCCCCcchhhhHHHHHHHHHhccCCC
Confidence 997 4433211 2357899999999985
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.2e-10 Score=85.31 Aligned_cols=95 Identities=9% Similarity=0.031 Sum_probs=62.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHH----HHhCCc-ceEEEEEcCCCCc-CCCCCCC
Q 030935 69 FSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC----EMNKLN-CRVMGLTWGFLDA-SIFDLNP 140 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~----~~n~~~-~~~~~l~~~~~~~-~~~~~~f 140 (169)
.++.+|||+|||+|..+..+++. +.+|+++|+++ .|++.+.+++ ..++.. +.+. .++... +.....
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~--~~l~~~~~~a~~~~~~~~~~~v~~~---~~d~~~l~~~~~~- 99 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADK--SRMEKISAKAAAKPAKGGLPNLLYL---WATAERLPPLSGV- 99 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCG--GGGHHHHHHHTSCGGGTCCTTEEEE---ECCSTTCCSCCCE-
T ss_pred cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCH--HHHHHHHHHHHHhhhhcCCCceEEE---ecchhhCCCCCCC-
Confidence 35779999999999999999998 56999999995 4887544333 233432 3333 333322 222223
Q ss_pred cEEEEcC---cCC--CCCChHHHHHHHHHhccCC
Q 030935 141 NIILGAD---VFY--DASGKICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~sd---~iy--~~~~~~~l~~~l~~~L~p~ 169 (169)
|.|...- ..+ +..+.+.+++.+.+.|+|+
T Consensus 100 d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 133 (218)
T 3mq2_A 100 GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPG 133 (218)
T ss_dssp EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEE
T ss_pred CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCC
Confidence 6666211 111 3455588999999999985
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-10 Score=91.73 Aligned_cols=95 Identities=15% Similarity=0.021 Sum_probs=66.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC-----CcceEEEEEcCCCCcC--CCCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK-----LNCRVMGLTWGFLDAS--IFDLNP 140 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~-----~~~~~~~l~~~~~~~~--~~~~~f 140 (169)
++++|||||||+|.++..+++.. .+|+++|++ +.+++.+++++...+ ..+++ ..++.... ..+.+|
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~a~~~~~~~~~~~~~~~v~~---~~~D~~~~l~~~~~~f 152 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEID--ETVIEVSKIYFKNISCGYEDKRVNV---FIEDASKFLENVTNTY 152 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCTTTSGGGGSTTEEE---EESCHHHHHHHCCSCE
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHhHHhccccCCCcEEE---EECChHHHHHhCCCCc
Confidence 56799999999999999998863 589999999 679999999876432 22333 33332221 124689
Q ss_pred cEEEEc--CcCCCCCCh--HHHHHHHHHhccCC
Q 030935 141 NIILGA--DVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 141 DlIi~s--d~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
|+|++. +.+.....+ ..+++.+++.|+|+
T Consensus 153 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg 185 (283)
T 2i7c_A 153 DVIIVDSSDPIGPAETLFNQNFYEKIYNALKPN 185 (283)
T ss_dssp EEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEE
T ss_pred eEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 999982 222111222 68999999999985
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=91.07 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=65.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHH--hCCc-ceEEEEEcCCCCc--CCCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEM--NKLN-CRVMGLTWGFLDA--SIFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~--n~~~-~~~~~l~~~~~~~--~~~~~~fDl 142 (169)
++++|||||||+|.++..+++. + .+|+++|++ +.+++.+++|+.. ++.. .++. +..++... ...+.+||+
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~~~~a~~~~~~~~~~~~~~~v~-~~~~D~~~~l~~~~~~fD~ 166 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVD--GLVIEAARKYLKQTSCGFDDPRAE-IVIANGAEYVRKFKNEFDV 166 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEE-EEESCHHHHGGGCSSCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHhHhhccccCCCceE-EEECcHHHHHhhCCCCceE
Confidence 4579999999999999999987 3 489999999 5799999999754 2221 1222 33343221 112458999
Q ss_pred EEEcCcCCC-CC-----ChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYD-AS-----GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~-~~-----~~~~l~~~l~~~L~p~ 169 (169)
|++ |+... .. ....+++.+++.|+|+
T Consensus 167 Ii~-d~~~~~~~~~~~l~~~~~l~~~~~~Lkpg 198 (296)
T 1inl_A 167 III-DSTDPTAGQGGHLFTEEFYQACYDALKED 198 (296)
T ss_dssp EEE-EC----------CCSHHHHHHHHHHEEEE
T ss_pred EEE-cCCCcccCchhhhhHHHHHHHHHHhcCCC
Confidence 997 43322 11 2378999999999985
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=93.04 Aligned_cols=97 Identities=14% Similarity=0.024 Sum_probs=66.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHH--hCC-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM--NKL-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~--n~~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
++++|||+|||+|.++..+++. +.+|+++|++ +.+++.+++|+.. ++. ..++ .+..++.... ..+.+||+
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis--~~~l~~ar~~~~~~~~~~~~~~v-~~~~~D~~~~l~~~~~~fDv 192 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEID--ETVIEVSKIYFKNISCGYEDKRV-NVFIEDASKFLENVTNTYDV 192 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCTTTSGGGGSTTE-EEEESCHHHHHHHCCSCEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHhhccccCCCcE-EEEEccHHHHHhhcCCCceE
Confidence 4579999999999999999986 3599999999 6799999999865 222 1122 2333443221 12458999
Q ss_pred EEEcCc--CCCCCC-h-HHHHHHHHHhccCC
Q 030935 143 ILGADV--FYDASG-K-ICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~--iy~~~~-~-~~l~~~l~~~L~p~ 169 (169)
|++.-. +..... + ..+++.+.+.|+|+
T Consensus 193 Ii~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg 223 (321)
T 2pt6_A 193 IIVDSSDPIGPAETLFNQNFYEKIYNALKPN 223 (321)
T ss_dssp EEEECCCSSSGGGGGSSHHHHHHHHHHEEEE
T ss_pred EEECCcCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 997421 111111 1 78999999999985
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2.4e-10 Score=90.14 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=66.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHh-CC--------cceEEEEEcCCCCcCCC-CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMN-KL--------NCRVMGLTWGFLDASIF-DL 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n-~~--------~~~~~~l~~~~~~~~~~-~~ 138 (169)
++++|||||||+|.++..+++.+. +|+++|++ +.+++.+++++..+ ++ ..++. +..++...... +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid--~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~-~~~~D~~~~l~~~~ 151 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID--EDVIMVSKDLIKIDNGLLEAMLNGKHEKAK-LTIGDGFEFIKNNR 151 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC--HHHHHHHHHHTCTTTTHHHHHHTTCCSSEE-EEESCHHHHHHHCC
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECC--HHHHHHHHHHHhhccccccccccCCCCcEE-EEECchHHHhcccC
Confidence 567999999999999999988854 89999999 67999999988211 11 11222 33344221111 46
Q ss_pred CCcEEEEcCcCCCC---CC--hHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDA---SG--KICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~---~~--~~~l~~~l~~~L~p~ 169 (169)
+||+|++ |..+.. .. ...+++.+++.|+|+
T Consensus 152 ~fD~Ii~-d~~~~~~~~~~l~~~~~l~~~~~~L~pg 186 (281)
T 1mjf_A 152 GFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNP 186 (281)
T ss_dssp CEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred CeeEEEE-CCCCCCCcchhhhHHHHHHHHHHhcCCC
Confidence 8999997 544321 11 377899999999985
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.1e-09 Score=81.08 Aligned_cols=104 Identities=11% Similarity=-0.030 Sum_probs=66.0
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
++..|.+.+.+.....++.+|||||||+|.+++.+++. +.+|+++|+++. . ... .+.+...++.
T Consensus 6 ~~~kl~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~--~--------~~~--~v~~~~~d~~ 73 (201)
T 2plw_A 6 AAYKLIELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM--D--------PIP--NVYFIQGEIG 73 (201)
T ss_dssp THHHHHHHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC--C--------CCT--TCEEEECCTT
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc--C--------CCC--CceEEEcccc
Confidence 45666666555443446779999999999999999886 358999999962 1 011 2233333332
Q ss_pred CCCc-----------------------CCCCCCCcEEEEcCcCCCCCC----h-------HHHHHHHHHhccCC
Q 030935 130 FLDA-----------------------SIFDLNPNIILGADVFYDASG----K-------ICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~-----------------------~~~~~~fDlIi~sd~iy~~~~----~-------~~l~~~l~~~L~p~ 169 (169)
+... ...+.+||+|++...+++... . ..+++.+.+.|+|+
T Consensus 74 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkpg 147 (201)
T 2plw_A 74 KDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIG 147 (201)
T ss_dssp TTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred chhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 2110 023358999998766655321 1 23678888999885
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=91.51 Aligned_cols=108 Identities=12% Similarity=-0.026 Sum_probs=78.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---------------CCeEEEEcCCCcHHHHHHHHHHHHHhCC--
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKL-- 119 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---------------ga~V~~~D~~~~~~~l~~~~~n~~~n~~-- 119 (169)
.++++|.+.....++.+|||.|||+|.+.+.+++. +.+++++|++ +.+++.|+.|+..+++
T Consensus 158 ~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~--~~~~~lA~~nl~l~g~~~ 235 (445)
T 2okc_A 158 PLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT--PLVVTLASMNLYLHGIGT 235 (445)
T ss_dssp HHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC--HHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCC--HHHHHHHHHHHHHhCCCc
Confidence 35666665544556789999999999999888763 3579999999 5799999999998887
Q ss_pred -cceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh-----------------HHHHHHHHHhccCC
Q 030935 120 -NCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGK-----------------ICAFEILICSLFPI 169 (169)
Q Consensus 120 -~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~-----------------~~l~~~l~~~L~p~ 169 (169)
...+ ..++........+||+|+++.++...... ..+++.+.+.|+|+
T Consensus 236 ~~~~i---~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~g 300 (445)
T 2okc_A 236 DRSPI---VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 300 (445)
T ss_dssp SCCSE---EECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred CCCCE---eeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccC
Confidence 3343 34444333233489999998776543221 36888888999874
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=90.92 Aligned_cols=96 Identities=13% Similarity=0.085 Sum_probs=67.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHH-hC--C-cceEEEEEcCCCCcC--CCCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEM-NK--L-NCRVMGLTWGFLDAS--IFDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~-n~--~-~~~~~~l~~~~~~~~--~~~~~fD 141 (169)
++++|||||||+|.++..+++. +.+|+++|++ +.+++.+++++.. ++ . ..++. +..++.... ..+.+||
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~ar~~~~~~~~~~~~~~~v~-~~~~D~~~~l~~~~~~fD 153 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDID--GELVEVAKRHMPEWHQGAFDDPRAV-LVIDDARAYLERTEERYD 153 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESC--HHHHHHHHHHCHHHHTTGGGCTTEE-EEESCHHHHHHHCCCCEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHHhHhhccccccCCceE-EEEchHHHHHHhcCCCcc
Confidence 4579999999999999999986 3589999999 5799999998764 22 1 11222 333443221 1245899
Q ss_pred EEEEcCcCCCC---CC-----hHHHHHHHHHhccCC
Q 030935 142 IILGADVFYDA---SG-----KICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~~---~~-----~~~l~~~l~~~L~p~ 169 (169)
+|++. ..... .. ...+++.+++.|+|+
T Consensus 154 ~Ii~d-~~~~~~~~~~~~~l~~~~~l~~~~~~Lkpg 188 (314)
T 1uir_A 154 VVIID-LTDPVGEDNPARLLYTVEFYRLVKAHLNPG 188 (314)
T ss_dssp EEEEE-CCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred EEEEC-CCCcccccCcchhccHHHHHHHHHHhcCCC
Confidence 99985 33322 11 478999999999985
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=6.5e-10 Score=86.69 Aligned_cols=57 Identities=11% Similarity=0.098 Sum_probs=47.3
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
+++.+.......++.+|||+|||+|.++..+++.+++|+++|++ ++|++.+++++..
T Consensus 17 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid--~~~~~~~~~~~~~ 73 (255)
T 3tqs_A 17 VLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEID--RDLVAFLQKKYNQ 73 (255)
T ss_dssp HHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECC--HHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECC--HHHHHHHHHHHhh
Confidence 33444444445578899999999999999999999999999999 5799999998864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-09 Score=79.99 Aligned_cols=101 Identities=13% Similarity=0.017 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
++..|.+.+.+.....++.+|||||||+|.+++.+++.+++|+++|+++. . .. ..+.+. .++...
T Consensus 9 a~~KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~--~--------~~--~~v~~~---~~D~~~ 73 (191)
T 3dou_A 9 AAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM--E--------EI--AGVRFI---RCDIFK 73 (191)
T ss_dssp HHHHHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC--C--------CC--TTCEEE---ECCTTS
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc--c--------cC--CCeEEE---EccccC
Confidence 56677777666544457889999999999999999999889999999963 1 01 123333 333322
Q ss_pred CC--------CC----CCCcEEEEcCcCCCCCC-----------hHHHHHHHHHhccCC
Q 030935 134 SI--------FD----LNPNIILGADVFYDASG-----------KICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~--------~~----~~fDlIi~sd~iy~~~~-----------~~~l~~~l~~~L~p~ 169 (169)
.. .. .+||+|++......... .+.+++...+.|+||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpG 132 (191)
T 3dou_A 74 ETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNG 132 (191)
T ss_dssp SSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCC
Confidence 11 11 38999998554322211 245677778888885
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-10 Score=91.25 Aligned_cols=96 Identities=15% Similarity=0.005 Sum_probs=64.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHh--CC-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMN--KL-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n--~~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
++++|||||||+|.++..+++. ..+|+++|++ +.+++.+++++... ++ ..++ .+..++.... ..+.+||+
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid--~~~i~~Ar~~~~~~~~~~~~~rv-~~~~~D~~~~l~~~~~~fD~ 184 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEID--EMVIDVAKKFLPGMSCGFSHPKL-DLFCGDGFEFLKNHKNEFDV 184 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSC--HHHHHHHHHHCTTTSGGGGCTTE-EEECSCHHHHHHHCTTCEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECC--HHHHHHHHHHHHHhccccCCCCE-EEEEChHHHHHHhcCCCceE
Confidence 4579999999999999999886 3599999999 67999999998643 22 1122 2344443221 13458999
Q ss_pred EEEcCcCCCC---CC-h-HHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA---SG-K-ICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~---~~-~-~~l~~~l~~~L~p~ 169 (169)
|++ |..... .. + ..+++.+++.|+|+
T Consensus 185 Ii~-d~~~~~~~~~~l~t~~~l~~~~~~Lkpg 215 (314)
T 2b2c_A 185 IIT-DSSDPVGPAESLFGQSYYELLRDALKED 215 (314)
T ss_dssp EEE-CCC-------------HHHHHHHHEEEE
T ss_pred EEE-cCCCCCCcchhhhHHHHHHHHHhhcCCC
Confidence 997 443211 11 2 78899999999985
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.8e-09 Score=82.35 Aligned_cols=59 Identities=14% Similarity=0.008 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
..+++.+.......++.+|||+|||+|.++..+++.+.+|+++|++ +++++.+++|+..
T Consensus 16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~--~~~~~~a~~~~~~ 74 (244)
T 1qam_A 16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID--HKLCKTTENKLVD 74 (244)
T ss_dssp HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC--HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECC--HHHHHHHHHhhcc
Confidence 3455566665555678899999999999999999999999999999 5699999998763
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-09 Score=79.89 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C----------CeEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G----------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g----------a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
+..|.+.........++.+|||+|||+|.+++.+++. + .+|+++|+++. . ... .+++
T Consensus 7 ~~kl~~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~--~--------~~~--~~~~ 74 (196)
T 2nyu_A 7 AFKLLEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI--F--------PLE--GATF 74 (196)
T ss_dssp HHHHHHHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC--C--------CCT--TCEE
T ss_pred HHHHHHHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc--c--------cCC--CCeE
Confidence 4455555554444456889999999999999999986 4 68999999962 1 001 1222
Q ss_pred EEEEcCCCCcC---------CCCCCCcEEEEcCcCCCCCCh-----------HHHHHHHHHhccCC
Q 030935 124 MGLTWGFLDAS---------IFDLNPNIILGADVFYDASGK-----------ICAFEILICSLFPI 169 (169)
Q Consensus 124 ~~l~~~~~~~~---------~~~~~fDlIi~sd~iy~~~~~-----------~~l~~~l~~~L~p~ 169 (169)
. ..++.... ..+.+||+|++...++..... ..+++.+.+.|+|+
T Consensus 75 ~--~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 138 (196)
T 2nyu_A 75 L--CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG 138 (196)
T ss_dssp E--CSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred E--EeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC
Confidence 2 02332211 123489999986554432221 47888899999985
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.8e-10 Score=90.26 Aligned_cols=113 Identities=16% Similarity=-0.056 Sum_probs=70.5
Q ss_pred eeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH---HhCCcceEEE
Q 030935 49 LFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE---MNKLNCRVMG 125 (169)
Q Consensus 49 ~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~---~n~~~~~~~~ 125 (169)
...-.++..|.+.+.. ....++.+|||||||+|.++..+++. .+|+++|+++ |+..++++.. ..+.++.+.
T Consensus 54 ~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~---m~~~a~~~~~~~~~~~~~v~~~- 127 (265)
T 2oxt_A 54 LSVSRGTAKLAWMEER-GYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT---LGVGGHEVPRITESYGWNIVKF- 127 (265)
T ss_dssp BCSSTHHHHHHHHHHH-TSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC---CCCSSCCCCCCCCBTTGGGEEE-
T ss_pred CccchHHHHHHHHHHc-CCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch---hhhhhhhhhhhhhccCCCeEEE-
Confidence 3444567777776665 33446789999999999999999988 7999999995 4322211100 011122222
Q ss_pred EEcCCCCcCCCCCCCcEEEEcCcCCCCCCh----H---HHHHHHHHhccCC
Q 030935 126 LTWGFLDASIFDLNPNIILGADVFYDASGK----I---CAFEILICSLFPI 169 (169)
Q Consensus 126 l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~----~---~l~~~l~~~L~p~ 169 (169)
...++... +.+.+||+|+|... +..... . .+++.+.+.|+|+
T Consensus 128 ~~~~D~~~-l~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG 176 (265)
T 2oxt_A 128 KSRVDIHT-LPVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKN 176 (265)
T ss_dssp ECSCCTTT-SCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecccCHhH-CCCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccC
Confidence 11444432 33568999998655 433332 1 2678888889886
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-10 Score=89.34 Aligned_cols=90 Identities=12% Similarity=0.001 Sum_probs=65.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH--hCC-cceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM--NKL-NCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~--n~~-~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.+++|||||||+|.++..+++.+.+|+++|++ +++++.+++++.. ++. ..++ .+..++..... .+||+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid--~~~i~~ar~~~~~~~~~~~~~rv-~~~~~D~~~~~--~~fD~Ii~d 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQAD--EKILDSFISFFPHFHEVKNNKNF-THAKQLLDLDI--KKYDLIFCL 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSC--HHHHGGGTTTSTTHHHHHTCTTE-EEESSGGGSCC--CCEEEEEES
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECC--HHHHHHHHHHHHhhccccCCCeE-EEEechHHHHH--hhCCEEEEC
Confidence 45799999999999999888776789999999 5799999887642 111 1122 24455543332 689999974
Q ss_pred CcCCCCCChHHHHHHHHHhccCC
Q 030935 147 DVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. .+...+++.+++.|+|+
T Consensus 147 -~----~dp~~~~~~~~~~L~pg 164 (262)
T 2cmg_A 147 -Q----EPDIHRIDGLKRMLKED 164 (262)
T ss_dssp -S----CCCHHHHHHHHTTEEEE
T ss_pred -C----CChHHHHHHHHHhcCCC
Confidence 2 33456899999999985
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.4e-09 Score=91.46 Aligned_cols=107 Identities=13% Similarity=-0.021 Sum_probs=74.3
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--C-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++..++..+. ..++.+|||+|||+|..++.+|+. + .+|+++|++ +.+++.+++|++.+++.+. +..++
T Consensus 89 ss~l~a~~L~----~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis--~~~l~~a~~n~~r~G~~v~---~~~~D 159 (464)
T 3m6w_A 89 SAQAVGVLLD----PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVD--GKRVRGLLENVERWGAPLA---VTQAP 159 (464)
T ss_dssp TTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSC--HHHHHHHHHHHHHHCCCCE---EECSC
T ss_pred HHHHHHHhcC----cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCeEE---EEECC
Confidence 4555555542 336789999999999999999875 2 489999999 5699999999999998733 33333
Q ss_pred CCcC--CCCCCCcEEEEcCc------CCCCCC----------------hHHHHHHHHHhccCC
Q 030935 131 LDAS--IFDLNPNIILGADV------FYDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~--~~~~~fDlIi~sd~------iy~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
.... ..+.+||+|++.-+ +....+ ...+++.+.+.|+||
T Consensus 160 a~~l~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 222 (464)
T 3m6w_A 160 PRALAEAFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPG 222 (464)
T ss_dssp HHHHHHHHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred HHHhhhhccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2221 13468999996222 111111 266888888888885
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-10 Score=90.07 Aligned_cols=114 Identities=14% Similarity=-0.060 Sum_probs=69.0
Q ss_pred ceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH---hCCcceEE
Q 030935 48 GLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM---NKLNCRVM 124 (169)
Q Consensus 48 g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~---n~~~~~~~ 124 (169)
|..+-.++..|.+.+.. ....++.+|||||||+|.++..+++. .+|+++|+++ |+..++++... .+.++.+.
T Consensus 61 ~~~~sR~a~KL~~i~~~-~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~---m~~~a~~~~~~~~~~~~~v~~~ 135 (276)
T 2wa2_A 61 GHAVSRGTAKLAWIDER-GGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT---LGTSGHEKPRLVETFGWNLITF 135 (276)
T ss_dssp ----CHHHHHHHHHHHT-TSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC---CCCTTSCCCCCCCCTTGGGEEE
T ss_pred CCcCchHHHHHHHHHHc-CCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch---hhhhhhhchhhhhhcCCCeEEE
Confidence 33445566777766654 33446889999999999999999988 7999999995 43222211100 01123322
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh----H---HHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASGK----I---CAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~----~---~l~~~l~~~L~p~ 169 (169)
...++... +.+.+||+|+|.-. +..... . .+++.+.+.|+|+
T Consensus 136 -~~~~D~~~-l~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpG 184 (276)
T 2wa2_A 136 -KSKVDVTK-MEPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYN 184 (276)
T ss_dssp -ECSCCGGG-CCCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred -eccCcHhh-CCCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccC
Confidence 11344432 23568999998655 433321 1 2678888889886
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=85.59 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=55.0
Q ss_pred CC--CeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH-------hC-CcceEEEEEcCCCCc--CCCC
Q 030935 70 SG--ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-------NK-LNCRVMGLTWGFLDA--SIFD 137 (169)
Q Consensus 70 ~~--~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~-------n~-~~~~~~~l~~~~~~~--~~~~ 137 (169)
++ .+|||+|||+|..++.+++.|++|+++|.+ +.+.+.+++|++. |+ +..++. +..++... ....
T Consensus 86 ~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~--~~~~~l~~~~l~~a~~~~~~~~~l~~~i~-~~~~D~~~~L~~~~ 162 (258)
T 2oyr_A 86 GDYLPDVVDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQ-LIHASSLTALTDIT 162 (258)
T ss_dssp TTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECC--HHHHHHHHHHHHHHHHCTTTHHHHHHHEE-EEESCHHHHSTTCS
T ss_pred CCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHHHHhhHhhhhhhhcCEE-EEECCHHHHHHhCc
Confidence 55 799999999999999999999999999999 5577777666542 22 211222 33444322 1122
Q ss_pred CCCcEEEEcCcCCCCC
Q 030935 138 LNPNIILGADVFYDAS 153 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~ 153 (169)
.+||+|+. |+.|...
T Consensus 163 ~~fDvV~l-DP~y~~~ 177 (258)
T 2oyr_A 163 PRPQVVYL-DPMFPHK 177 (258)
T ss_dssp SCCSEEEE-CCCCCCC
T ss_pred ccCCEEEE-cCCCCCc
Confidence 37999997 6777554
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-09 Score=84.07 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=58.9
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC--
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-- 137 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-- 137 (169)
+.+.+.....++ +|||+|||+|.++..+++.+++|+++|+++ +|++.+++++.. .+++ +..++......+
T Consensus 37 ~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~--~~~~~l~~~~~~--~~v~---vi~~D~l~~~~~~~ 108 (271)
T 3fut_A 37 RRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDL--RLRPVLEETLSG--LPVR---LVFQDALLYPWEEV 108 (271)
T ss_dssp HHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCG--GGHHHHHHHTTT--SSEE---EEESCGGGSCGGGS
T ss_pred HHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCH--HHHHHHHHhcCC--CCEE---EEECChhhCChhhc
Confidence 334444445567 999999999999999999999999999995 599999998762 2233 334444332122
Q ss_pred CCCcEEEEcCcCCCC
Q 030935 138 LNPNIILGADVFYDA 152 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~ 152 (169)
..+|.|+++ +.|+.
T Consensus 109 ~~~~~iv~N-lPy~i 122 (271)
T 3fut_A 109 PQGSLLVAN-LPYHI 122 (271)
T ss_dssp CTTEEEEEE-ECSSC
T ss_pred cCccEEEec-Ccccc
Confidence 268888875 45555
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.5e-09 Score=87.65 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=66.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
++.+|||+|||+|..+..+++. +.+++++|+ + .+++.+++. . .++ +..++...+.. .||+|+++.
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~--~~~~~a~~~---~--~v~---~~~~d~~~~~p--~~D~v~~~~ 254 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-P--QVVENLSGS---N--NLT---YVGGDMFTSIP--NADAVLLKY 254 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCB---T--TEE---EEECCTTTCCC--CCSEEEEES
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-H--HHHhhcccC---C--CcE---EEeccccCCCC--CccEEEeeh
Confidence 4579999999999999999886 458999999 4 488776641 1 133 33344433322 499999999
Q ss_pred cCCCCCChH--HHHHHHHHhccC
Q 030935 148 VFYDASGKI--CAFEILICSLFP 168 (169)
Q Consensus 148 ~iy~~~~~~--~l~~~l~~~L~p 168 (169)
++|+..+.+ .+++.++++|+|
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p 277 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTN 277 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSG
T ss_pred hhccCCHHHHHHHHHHHHHhCCC
Confidence 999888777 999999999999
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.9e-09 Score=86.94 Aligned_cols=110 Identities=11% Similarity=-0.032 Sum_probs=73.5
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
++..++..+... ..++.+|||+|||+|..++.+++. +.+|+++|++ +.+++.+++|++.+++.. +. +..++
T Consensus 103 ~s~l~~~~L~~~--~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis--~~~l~~~~~n~~r~g~~n-v~-~~~~D 176 (479)
T 2frx_A 103 SSMLPVAALFAD--GNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFS--ASRVKVLHANISRCGISN-VA-LTHFD 176 (479)
T ss_dssp HHHHHHHHHTTT--TCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSS--HHHHHHHHHHHHHHTCCS-EE-EECCC
T ss_pred HHHHHHHHhCcc--cCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHHHHHHHcCCCc-EE-EEeCC
Confidence 344445544221 126789999999999999998885 2589999999 569999999999988752 22 33333
Q ss_pred CCcC--CCCCCCcEEEEcCcC------CCCCC----------------hHHHHHHHHHhccCC
Q 030935 131 LDAS--IFDLNPNIILGADVF------YDASG----------------KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~--~~~~~fDlIi~sd~i------y~~~~----------------~~~l~~~l~~~L~p~ 169 (169)
.... ..+.+||.|++.-+. ....+ ...+++.+.+.|+||
T Consensus 177 ~~~~~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpG 239 (479)
T 2frx_A 177 GRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPG 239 (479)
T ss_dssp STTHHHHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred HHHhhhhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3221 134589999973222 11111 246788888889885
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-08 Score=82.16 Aligned_cols=96 Identities=14% Similarity=0.044 Sum_probs=71.1
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
....++|||+|||+|..++.+++... ++++.|. |.+++.+++++...+. .++ .+.-+++.... ...+|+|+.
T Consensus 177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl---p~v~~~a~~~~~~~~~-~rv-~~~~gD~~~~~-~~~~D~~~~ 250 (353)
T 4a6d_A 177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI---PEVVWTAKQHFSFQEE-EQI-DFQEGDFFKDP-LPEADLYIL 250 (353)
T ss_dssp GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC---HHHHHHHHHHSCC--C-CSE-EEEESCTTTSC-CCCCSEEEE
T ss_pred cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC---HHHHHHHHHhhhhccc-Cce-eeecCccccCC-CCCceEEEe
Confidence 33557999999999999999998754 6777777 5699999988764432 222 24445554432 236899999
Q ss_pred cCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 146 ADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+.++|+..+- ..+++.++++|+|+
T Consensus 251 ~~vlh~~~d~~~~~iL~~~~~al~pg 276 (353)
T 4a6d_A 251 ARVLHDWADGKCSHLLERIYHTCKPG 276 (353)
T ss_dssp ESSGGGSCHHHHHHHHHHHHHHCCTT
T ss_pred eeecccCCHHHHHHHHHHHHhhCCCC
Confidence 9999977654 57899999999996
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.3e-09 Score=88.84 Aligned_cols=88 Identities=15% Similarity=0.011 Sum_probs=66.7
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
.++.+|||+|||+|..+..+++.+. +++++|+ + .+++.+++. ..++ +..++...+. + .||+|+++
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~--~~~~~a~~~-----~~v~---~~~~d~~~~~-~-~~D~v~~~ 274 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-P--QVIENAPPL-----SGIE---HVGGDMFASV-P-QGDAMILK 274 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-H--HHHTTCCCC-----TTEE---EEECCTTTCC-C-CEEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-H--HHHHhhhhc-----CCCE---EEeCCcccCC-C-CCCEEEEe
Confidence 3567999999999999999998764 7888898 3 488766541 1233 3344544332 2 39999999
Q ss_pred CcCCCCCChH--HHHHHHHHhccCC
Q 030935 147 DVFYDASGKI--CAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~~--~l~~~l~~~L~p~ 169 (169)
.++|+..+.+ .+++.++++|+|+
T Consensus 275 ~~lh~~~d~~~~~~l~~~~~~L~pg 299 (372)
T 1fp1_D 275 AVCHNWSDEKCIEFLSNCHKALSPN 299 (372)
T ss_dssp SSGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999888777 9999999999985
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.6e-09 Score=88.15 Aligned_cols=109 Identities=13% Similarity=-0.039 Sum_probs=74.3
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
+++..++..+. ..+|.+|||+|||+|..++.+|+. ..+|+++|++ +.+++.+++|++.+++.. +. +..+
T Consensus 92 ~ss~l~~~~L~----~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis--~~rl~~~~~n~~r~g~~n-v~-v~~~ 163 (456)
T 3m4x_A 92 PSAMIVGTAAA----AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIF--PKRAKILSENIERWGVSN-AI-VTNH 163 (456)
T ss_dssp TTTHHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSS--HHHHHHHHHHHHHHTCSS-EE-EECC
T ss_pred HHHHHHHHHcC----CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCc-eE-EEeC
Confidence 34555555552 346789999999999999988875 2489999999 569999999999998863 22 3333
Q ss_pred CCCcC--CCCCCCcEEEEcCcCCCC---------------CC-------hHHHHHHHHHhccCC
Q 030935 130 FLDAS--IFDLNPNIILGADVFYDA---------------SG-------KICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~--~~~~~fDlIi~sd~iy~~---------------~~-------~~~l~~~l~~~L~p~ 169 (169)
+.... ..+.+||+|++.-+.... .. ...+++...+.|+||
T Consensus 164 Da~~l~~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG 227 (456)
T 3m4x_A 164 APAELVPHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNK 227 (456)
T ss_dssp CHHHHHHHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEE
T ss_pred CHHHhhhhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 32211 134689999974432111 11 126788888888885
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.9e-09 Score=87.62 Aligned_cols=84 Identities=8% Similarity=-0.113 Sum_probs=58.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
..++++|.+.....++.+|||+|||+|.+++.+++. +.+|+++|+++. +++.+ ..+. +..++..
T Consensus 25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~--~~~~a--------~~~~---~~~~D~~ 91 (421)
T 2ih2_A 25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDLP--------PWAE---GILADFL 91 (421)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT--TCCCC--------TTEE---EEESCGG
T ss_pred HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHH--HHHhC--------CCCc---EEeCChh
Confidence 457777776654445679999999999999999874 359999999964 76655 1222 3334443
Q ss_pred cCCCCCCCcEEEEcCcCCCC
Q 030935 133 ASIFDLNPNIILGADVFYDA 152 (169)
Q Consensus 133 ~~~~~~~fDlIi~sd~iy~~ 152 (169)
......+||+|+++.+....
T Consensus 92 ~~~~~~~fD~Ii~NPPy~~~ 111 (421)
T 2ih2_A 92 LWEPGEAFDLILGNPPYGIV 111 (421)
T ss_dssp GCCCSSCEEEEEECCCCCCB
T ss_pred hcCccCCCCEEEECcCccCc
Confidence 33334589999998776543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-09 Score=86.56 Aligned_cols=77 Identities=12% Similarity=-0.020 Sum_probs=56.2
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC---CCCCc
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF---DLNPN 141 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~---~~~fD 141 (169)
...++.+|||+|||+|..++.+++. +.+|+++|.+ +.+++.+++|++.++..+.+...++.+...... ..+||
T Consensus 23 ~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d--~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D 100 (301)
T 1m6y_A 23 KPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVD--SEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVD 100 (301)
T ss_dssp CCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEE
T ss_pred CCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCC
Confidence 3446789999999999999999987 4699999999 679999999998876444444333332211011 14799
Q ss_pred EEEE
Q 030935 142 IILG 145 (169)
Q Consensus 142 lIi~ 145 (169)
.|++
T Consensus 101 ~Vl~ 104 (301)
T 1m6y_A 101 GILM 104 (301)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-09 Score=84.95 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=64.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
..+.+|||+|||+|..+..+++.. .+++++|+ +.+++.++++ ..++ +..++...+.. .. |+|+++
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~-----~~v~---~~~~d~~~~~p-~~-D~v~~~ 268 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL---PHVIQDAPAF-----SGVE---HLGGDMFDGVP-KG-DAIFIK 268 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCC-----TTEE---EEECCTTTCCC-CC-SEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh---HHHHHhhhhc-----CCCE---EEecCCCCCCC-CC-CEEEEe
Confidence 345799999999999999998864 48999999 3577766532 2233 33445444333 23 999999
Q ss_pred CcCCCCCC--hHHHHHHHHHhccCC
Q 030935 147 DVFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
.++|+..+ ...+++.++++|+|+
T Consensus 269 ~vlh~~~~~~~~~~l~~~~~~L~pg 293 (368)
T 3reo_A 269 WICHDWSDEHCLKLLKNCYAALPDH 293 (368)
T ss_dssp SCGGGBCHHHHHHHHHHHHHHSCTT
T ss_pred chhhcCCHHHHHHHHHHHHHHcCCC
Confidence 99996654 457899999999996
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.8e-08 Score=88.66 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=78.1
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC----------------------------------------
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---------------------------------------- 92 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---------------------------------------- 92 (169)
|-...||.-|.......++..+||.+||+|.+.+.++..+
T Consensus 173 pl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 173 PIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp SSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 3445677777766555567899999999999999888753
Q ss_pred ----CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---CCCCCCcEEEEcCcCCC----CCChHHHHHH
Q 030935 93 ----SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---IFDLNPNIILGADVFYD----ASGKICAFEI 161 (169)
Q Consensus 93 ----a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~~~~~fDlIi~sd~iy~----~~~~~~l~~~ 161 (169)
.+|+++|++ +.+++.++.|+..+++...+. +..++.... ....+||+|+++.+.-. ...+..+++.
T Consensus 253 ~~~~~~i~G~Did--~~av~~A~~N~~~agv~~~i~-~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~ 329 (703)
T 3v97_A 253 AEYSSHFYGSDSD--ARVIQRARTNARLAGIGELIT-FEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSL 329 (703)
T ss_dssp HHCCCCEEEEESC--HHHHHHHHHHHHHTTCGGGEE-EEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred ccCCccEEEEECC--HHHHHHHHHHHHHcCCCCceE-EEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence 479999999 679999999999999874322 333443322 11228999998666432 1245666666
Q ss_pred HHHhcc
Q 030935 162 LICSLF 167 (169)
Q Consensus 162 l~~~L~ 167 (169)
+.+.|+
T Consensus 330 l~~~lk 335 (703)
T 3v97_A 330 LGRIMK 335 (703)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655554
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.79 E-value=3.2e-10 Score=87.42 Aligned_cols=87 Identities=17% Similarity=0.113 Sum_probs=57.9
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD- 137 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~- 137 (169)
++.+.+.....++.+|||+|||+|.++..+++.+.+|+++|+++. +++.+++|+. ....+ .+..++......+
T Consensus 18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~--~~~~a~~~~~-~~~~v---~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH--LFNLSSEKLK-LNTRV---TLIHQDILQFQFPN 91 (245)
T ss_dssp HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS--SSSSSSCTTT-TCSEE---EECCSCCTTTTCCC
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHH--HHHHHHHHhc-cCCce---EEEECChhhcCccc
Confidence 344444444456779999999999999999999999999999965 8888887765 11122 2444554332122
Q ss_pred -CCCcEEEEcCcCCCCC
Q 030935 138 -LNPNIILGADVFYDAS 153 (169)
Q Consensus 138 -~~fDlIi~sd~iy~~~ 153 (169)
.+| .|++ ++.|+..
T Consensus 92 ~~~f-~vv~-n~Py~~~ 106 (245)
T 1yub_A 92 KQRY-KIVG-NIPYHLS 106 (245)
T ss_dssp SSEE-EEEE-ECCSSSC
T ss_pred CCCc-EEEE-eCCcccc
Confidence 367 6665 4555543
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=78.60 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=58.2
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~ 136 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+ .+|+++|++ +.+++.++++ . ..+++ +..++......
T Consensus 19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid--~~~~~~~~~~-~--~~~v~---~i~~D~~~~~~ 90 (249)
T 3ftd_A 19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELD--REMVENLKSI-G--DERLE---VINEDASKFPF 90 (249)
T ss_dssp HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCC--HHHHHHHTTS-C--CTTEE---EECSCTTTCCG
T ss_pred HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECC--HHHHHHHHhc-c--CCCeE---EEEcchhhCCh
Confidence 34445555555578899999999999999999996 699999999 5699999887 2 22233 34455433211
Q ss_pred CC-CCcEEEEcCcCCCC
Q 030935 137 DL-NPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~-~fDlIi~sd~iy~~ 152 (169)
+. ..++++.+++.|+.
T Consensus 91 ~~~~~~~~vv~NlPy~i 107 (249)
T 3ftd_A 91 CSLGKELKVVGNLPYNV 107 (249)
T ss_dssp GGSCSSEEEEEECCTTT
T ss_pred hHccCCcEEEEECchhc
Confidence 11 11445556777765
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.6e-08 Score=82.36 Aligned_cols=88 Identities=14% Similarity=-0.047 Sum_probs=64.9
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
....+|||+|||+|..+..+++.. .+++++|+ +.+++.++.+ ..++ +..++...+.. .. |+|+++
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~---~~~~~~a~~~-----~~v~---~~~~D~~~~~p-~~-D~v~~~ 266 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL---PHVISEAPQF-----PGVT---HVGGDMFKEVP-SG-DTILMK 266 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC---HHHHTTCCCC-----TTEE---EEECCTTTCCC-CC-SEEEEE
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC---HHHHHhhhhc-----CCeE---EEeCCcCCCCC-CC-CEEEeh
Confidence 356799999999999999998864 48999999 3577766532 2233 33445444333 23 999999
Q ss_pred CcCCCCC--ChHHHHHHHHHhccCC
Q 030935 147 DVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.++|+.. ....+++.++++|+|+
T Consensus 267 ~vlh~~~d~~~~~~L~~~~~~L~pg 291 (364)
T 3p9c_A 267 WILHDWSDQHCATLLKNCYDALPAH 291 (364)
T ss_dssp SCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred HHhccCCHHHHHHHHHHHHHHcCCC
Confidence 9999664 4568999999999996
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-08 Score=80.79 Aligned_cols=109 Identities=17% Similarity=-0.005 Sum_probs=65.7
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcC----CCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDD----SNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~----~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
.-.++..|.+.+.+ ....++.+|||||||+|.++..+++. ++|+++|+ ++. ++..++ .+..+.+ .+ .+
T Consensus 64 ~sR~a~KL~~i~~~-~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~--~~~~~~--~~~~~~~-~v-~~ 135 (305)
T 2p41_A 64 VSRGSAKLRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPG--HEEPIP--MSTYGWN-LV-RL 135 (305)
T ss_dssp SSTHHHHHHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTT--SCCCCC--CCSTTGG-GE-EE
T ss_pred cccHHHHHHHHHHc-CCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchh--HHHHHH--hhhcCCC-Ce-EE
Confidence 33456777776655 33445789999999999999999998 68999999 431 221110 0101111 12 23
Q ss_pred EcC-CCCcCCCCCCCcEEEEcCcCCCCCC----hH---HHHHHHHHhccCC
Q 030935 127 TWG-FLDASIFDLNPNIILGADVFYDASG----KI---CAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~-~~~~~~~~~~fDlIi~sd~iy~~~~----~~---~l~~~l~~~L~p~ 169 (169)
..+ +... ....+||+|+|.-.. +... .. .+++.+.+.|+||
T Consensus 136 ~~~~D~~~-l~~~~fD~V~sd~~~-~~g~~~~d~~~~l~~L~~~~~~LkpG 184 (305)
T 2p41_A 136 QSGVDVFF-IPPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNN 184 (305)
T ss_dssp ECSCCTTT-SCCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred Eecccccc-CCcCCCCEEEECCcc-ccCcchhhHHHHHHHHHHHHHHhCCC
Confidence 344 4332 234589999984433 2211 11 3677788999996
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-08 Score=82.65 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=65.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
.+.+|||+|||+|..+..+++.. .+++++|++ .+++.+++. ..++ +..++...+. + .||+|+++.
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~---~~~~~a~~~-----~~v~---~~~~d~~~~~-~-~~D~v~~~~ 259 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQP---QVVGNLTGN-----ENLN---FVGGDMFKSI-P-SADAVLLKW 259 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECH---HHHSSCCCC-----SSEE---EEECCTTTCC-C-CCSEEEEES
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccH---HHHhhcccC-----CCcE---EEeCccCCCC-C-CceEEEEcc
Confidence 45799999999999999999874 389999983 477665531 1233 3344444332 2 599999999
Q ss_pred cCCCCCChH--HHHHHHHHhccC
Q 030935 148 VFYDASGKI--CAFEILICSLFP 168 (169)
Q Consensus 148 ~iy~~~~~~--~l~~~l~~~L~p 168 (169)
++|+..+.+ .+++.++++|+|
T Consensus 260 vlh~~~d~~~~~~l~~~~~~L~p 282 (358)
T 1zg3_A 260 VLHDWNDEQSLKILKNSKEAISH 282 (358)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTGG
T ss_pred cccCCCHHHHHHHHHHHHHhCCC
Confidence 999888866 999999999998
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-08 Score=80.11 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCe----EEEEcCCCcHHHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN----VTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~----V~~~D~~~~~~~l~~~~~n~ 114 (169)
++.+.......++.+|||+|||+|.++..+++.+.+ |+++|++ ++|++.++++.
T Consensus 31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid--~~~l~~a~~~~ 88 (279)
T 3uzu_A 31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELD--RDLIGRLEQRF 88 (279)
T ss_dssp HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECC--HHHHHHHHHHH
T ss_pred HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECC--HHHHHHHHHhc
Confidence 344444444557889999999999999999998877 9999999 57999999983
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.7e-09 Score=74.69 Aligned_cols=83 Identities=13% Similarity=-0.034 Sum_probs=63.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi~s 146 (169)
..+|.+|||+|||+ +.+|++ +.|++.++++...+ +++...+..+... ...+.+||+|+++
T Consensus 10 ~~~g~~vL~~~~g~--------------v~vD~s--~~ml~~a~~~~~~~---~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------SPVEAL--KGLVDKLQALTGNE---GRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CCTTSEEEEEECTT--------------SCHHHH--HHHHHHHHHHTTTT---SEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCCEEEEecCCc--------------eeeeCC--HHHHHHHHHhcccC---cEEEEechhcCccccCCCCCEeEEEEC
Confidence 34688999999996 238888 57999999876432 4555555544321 1145689999999
Q ss_pred CcCCCC-CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA-SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~-~~~~~l~~~l~~~L~p~ 169 (169)
.++++. .+.+.+++.+++.|||+
T Consensus 71 ~~l~~~~~~~~~~l~~~~r~Lkpg 94 (176)
T 2ld4_A 71 LVPGSTTLHSAEILAEIARILRPG 94 (176)
T ss_dssp CSTTCCCCCCHHHHHHHHHHEEEE
T ss_pred ChhhhcccCHHHHHHHHHHHCCCC
Confidence 999998 89999999999999996
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=82.65 Aligned_cols=99 Identities=8% Similarity=0.000 Sum_probs=69.2
Q ss_pred ccCCCCCCeEEEECCCCCHHHHHHHH---hCC---eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 65 QRYRFSGANVVELGAGTSLPGLVAAK---VGS---NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~~l~~a~---~ga---~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
+....+++.|||+|||+|.++.++++ .++ +|+++|.++ +...+++..+.|+...++. +..++.++-..++
T Consensus 352 ~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp---~A~~a~~~v~~N~~~dkVt-VI~gd~eev~LPE 427 (637)
T 4gqb_A 352 EEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP---NAVVTLENWQFEEWGSQVT-VVSSDMREWVAPE 427 (637)
T ss_dssp GGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH---HHHHHHHHHHHHTTGGGEE-EEESCTTTCCCSS
T ss_pred ccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH---HHHHHHHHHHhccCCCeEE-EEeCcceeccCCc
Confidence 33445567899999999999555544 333 689999984 7778899999999876654 5557766555667
Q ss_pred CCcEEEEcCcC----CCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVF----YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~i----y~~~~~~~l~~~l~~~L~p~ 169 (169)
++|+||+ +.+ .+...+ ..+..-.+.|||+
T Consensus 428 KVDIIVS-EwMG~fLl~E~ml-evL~Ardr~LKPg 460 (637)
T 4gqb_A 428 KADIIVS-ELLGSFADNELSP-ECLDGAQHFLKDD 460 (637)
T ss_dssp CEEEEEC-CCCBTTBGGGCHH-HHHHHHGGGEEEE
T ss_pred ccCEEEE-EcCcccccccCCH-HHHHHHHHhcCCC
Confidence 9999995 433 233333 5556667777774
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-08 Score=76.01 Aligned_cols=93 Identities=12% Similarity=-0.008 Sum_probs=64.5
Q ss_pred CeEEEECCCC---CHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCC-cceEEEEEcCCCCcCC---C----CC
Q 030935 72 ANVVELGAGT---SLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKL-NCRVMGLTWGFLDASI---F----DL 138 (169)
Q Consensus 72 ~~vLElGcGt---Gl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~-~~~~~~l~~~~~~~~~---~----~~ 138 (169)
.+|||||||+ |.+...+.+. +++|+++|.| +.|++.++.++..+.. .+. +...+..... . ..
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~s--p~mLa~Ar~~l~~~~~~~~~---~v~aD~~~~~~~l~~~~~~~ 154 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDND--PIVLTLSQGLLASTPEGRTA---YVEADMLDPASILDAPELRD 154 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECC--HHHHHTTHHHHCCCSSSEEE---EEECCTTCHHHHHTCHHHHT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCC--hHHHHHHHHHhccCCCCcEE---EEEecccChhhhhccccccc
Confidence 5899999996 4555544443 5699999999 6799999988764321 233 3333332210 0 12
Q ss_pred CCc-----EEEEcCcCCCCCC---hHHHHHHHHHhccCC
Q 030935 139 NPN-----IILGADVFYDASG---KICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fD-----lIi~sd~iy~~~~---~~~l~~~l~~~L~p~ 169 (169)
.|| .|+++-++|+..+ ...+++.+.+.|+||
T Consensus 155 ~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PG 193 (277)
T 3giw_A 155 TLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSG 193 (277)
T ss_dssp TCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTT
T ss_pred ccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCC
Confidence 343 6888999999987 467999999999997
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.65 E-value=1.5e-07 Score=75.25 Aligned_cols=86 Identities=15% Similarity=0.061 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWG 129 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~ 129 (169)
++.+++.++. ..+|.+|||+|||+|..++.+++. + .+|+++|++ +.+++.+++|++.+++. +.+...++.
T Consensus 90 ~s~l~~~~l~----~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~--~~~l~~~~~n~~r~g~~~v~~~~~D~~ 163 (309)
T 2b9e_A 90 ASCLPAMLLD----PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLD--AKRLASMATLLARAGVSCCELAEEDFL 163 (309)
T ss_dssp GGGHHHHHHC----CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred HHHHHHHHhC----CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCC--HHHHHHHHHHHHHcCCCeEEEEeCChH
Confidence 3445555442 346789999999999999998874 2 489999999 56999999999999874 333333332
Q ss_pred CCCcCCC-CCCCcEEEE
Q 030935 130 FLDASIF-DLNPNIILG 145 (169)
Q Consensus 130 ~~~~~~~-~~~fDlIi~ 145 (169)
....... ..+||.|++
T Consensus 164 ~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 164 AVSPSDPRYHEVHYILL 180 (309)
T ss_dssp GSCTTCGGGTTEEEEEE
T ss_pred hcCccccccCCCCEEEE
Confidence 2211111 147999996
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-08 Score=83.55 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=59.7
Q ss_pred CCCeEEEECCC------CCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCC---
Q 030935 70 SGANVVELGAG------TSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIF--- 136 (169)
Q Consensus 70 ~~~~vLElGcG------tGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~--- 136 (169)
++.+||||||| +|..++.+++. +++|+++|+++. |. ....++++. .++... ++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~--m~--------~~~~rI~fv---~GDa~dlpf~~~l 282 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDK--SH--------VDELRIRTI---QGDQNDAEFLDRI 282 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCC--GG--------GCBTTEEEE---ECCTTCHHHHHHH
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHH--Hh--------hcCCCcEEE---Eecccccchhhhh
Confidence 56799999999 77777766653 569999999975 52 122233333 344322 122
Q ss_pred ---CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 ---DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ---~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+||+|++. ..++..+....++.+.+.||||
T Consensus 283 ~~~d~sFDlVisd-gsH~~~d~~~aL~el~rvLKPG 317 (419)
T 3sso_A 283 ARRYGPFDIVIDD-GSHINAHVRTSFAALFPHVRPG 317 (419)
T ss_dssp HHHHCCEEEEEEC-SCCCHHHHHHHHHHHGGGEEEE
T ss_pred hcccCCccEEEEC-CcccchhHHHHHHHHHHhcCCC
Confidence 3689999985 4566677888999999999986
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-08 Score=78.65 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=42.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCe--EEEEcCCCcHHHHHHHHHHHHH
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSN--VTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~--V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
+++.+.+.....++.+|||+|||+|.++. +++ +.+ |+++|++ ++|++.+++++..
T Consensus 9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid--~~~~~~a~~~~~~ 65 (252)
T 1qyr_A 9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELD--RDLAARLQTHPFL 65 (252)
T ss_dssp HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCC--HHHHHHHHTCTTT
T ss_pred HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECC--HHHHHHHHHHhcc
Confidence 44455554445577899999999999999 654 567 9999999 5799999987754
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-07 Score=77.80 Aligned_cols=94 Identities=10% Similarity=-0.077 Sum_probs=66.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWG 129 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~ 129 (169)
+..|++.+.......++.+|+|.+||||.+.+.+++. ..+++++|++ +.++..++.|+..+++...-..+.++
T Consensus 206 v~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid--~~~~~lA~~Nl~l~gi~~~~~~I~~g 283 (542)
T 3lkd_A 206 AKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELN--TSTYNLARMNMILHGVPIENQFLHNA 283 (542)
T ss_dssp HHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESC--HHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred HHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECc--HHHHHHHHHHHHHcCCCcCccceEec
Confidence 3444554443222346779999999999988887775 3489999999 56999999999999885321235556
Q ss_pred CCCcC----CCCCCCcEEEEcCcCC
Q 030935 130 FLDAS----IFDLNPNIILGADVFY 150 (169)
Q Consensus 130 ~~~~~----~~~~~fDlIi~sd~iy 150 (169)
+.... ....+||+|+++.++-
T Consensus 284 DtL~~d~p~~~~~~fD~IvaNPPf~ 308 (542)
T 3lkd_A 284 DTLDEDWPTQEPTNFDGVLMNPPYS 308 (542)
T ss_dssp CTTTSCSCCSSCCCBSEEEECCCTT
T ss_pred ceecccccccccccccEEEecCCcC
Confidence 54332 2345899999987763
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=80.94 Aligned_cols=110 Identities=15% Similarity=0.067 Sum_probs=75.1
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--------------------CCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--------------------ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
++++|.+.....++.+|||.+||||.+.+.+++. ..+++++|++ +.+++.|+.|+..+
T Consensus 157 iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid--~~~~~lA~~nl~l~ 234 (541)
T 2ar0_A 157 LIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV--PGTRRLALMNCLLH 234 (541)
T ss_dssp HHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC--HHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCC--HHHHHHHHHHHHHh
Confidence 4455554444456789999999999998887753 1379999999 57999999999988
Q ss_pred CCcce---EEEEEcCCCCcC--CCCCCCcEEEEcCcCCCCCC--------------hHHHHHHHHHhccCC
Q 030935 118 KLNCR---VMGLTWGFLDAS--IFDLNPNIILGADVFYDASG--------------KICAFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~---~~~l~~~~~~~~--~~~~~fDlIi~sd~iy~~~~--------------~~~l~~~l~~~L~p~ 169 (169)
++... -..+.+++.... ....+||+|+++.++-.... ...+++.+.+.|+|+
T Consensus 235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~g 305 (541)
T 2ar0_A 235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 305 (541)
T ss_dssp TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCC
Confidence 87520 011334543321 12358999999877643322 136888888888874
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.3e-07 Score=67.57 Aligned_cols=52 Identities=31% Similarity=0.370 Sum_probs=42.0
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCC-HHHHHHHH-hCCeEEEEcCCCc
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTS-LPGLVAAK-VGSNVTLTDDSNR 103 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtG-l~~l~~a~-~ga~V~~~D~~~~ 103 (169)
.+.+.|. .|++|+.++.. .+.+|||+|||.| -++..+++ .|..|++||+++.
T Consensus 17 ~~~~m~e---~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~ 70 (153)
T 2k4m_A 17 RGSHMWN---DLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPS 70 (153)
T ss_dssp CCCHHHH---HHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCS
T ss_pred chhhHHH---HHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcc
Confidence 4555644 58999987642 3569999999999 59999997 8899999999974
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.7e-06 Score=63.22 Aligned_cols=90 Identities=18% Similarity=0.210 Sum_probs=62.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCC--cceEEEEEcCCCCcC------------
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDAS------------ 134 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~--~~~~~~l~~~~~~~~------------ 134 (169)
+.++|||+|| |..++++|+. +.+|+.+|.+ ++..+.+++|++.++. ..++. +.+++..+.
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d--~~~~~~ar~~l~~~g~~~~~~I~-~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESD--RAWARMMKAWLAANPPAEGTEVN-IVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESC--HHHHHHHHHHHHHSCCCTTCEEE-EEECCCSSBCGGGCBSSSTTG
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCC--HHHHHHHHHHHHHcCCCCCCceE-EEEeCchhhhcccccccchhh
Confidence 4579999998 5788998886 6799999999 5799999999999887 43332 444542211
Q ss_pred ------------C-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 ------------I-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ------------~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. ...+||+|+- |-=+ ....+......|+||
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfI-Dg~k----~~~~~~~~l~~l~~G 147 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLV-DGRF----RVGCALATAFSITRP 147 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEE-CSSS----HHHHHHHHHHHCSSC
T ss_pred hhHHHHhhhhhccccCCCCCEEEE-eCCC----chhHHHHHHHhcCCC
Confidence 1 1258999996 3321 124444455788875
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.9e-07 Score=75.51 Aligned_cols=90 Identities=11% Similarity=0.036 Sum_probs=62.5
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-----------------CCeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-----------------GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-----------------ga~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
.++++|.+.....++ +|||.+||||.+.+.+++. ..+++++|++ +.+++.|+.|+..+++
T Consensus 232 ~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid--~~~~~lA~~Nl~l~gi 308 (544)
T 3khk_A 232 SIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESN--PTTWKLAAMNMVIRGI 308 (544)
T ss_dssp HHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCC--HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCC--HHHHHHHHHHHHHhCC
Confidence 344555544333334 9999999999887776542 3479999999 6799999999999988
Q ss_pred cceEEEEEcCCCCcC--CCCCCCcEEEEcCcCC
Q 030935 120 NCRVMGLTWGFLDAS--IFDLNPNIILGADVFY 150 (169)
Q Consensus 120 ~~~~~~l~~~~~~~~--~~~~~fDlIi~sd~iy 150 (169)
...+ .+.+++.... ....+||+||++.++-
T Consensus 309 ~~~i-~i~~gDtL~~~~~~~~~fD~Iv~NPPf~ 340 (544)
T 3khk_A 309 DFNF-GKKNADSFLDDQHPDLRADFVMTNPPFN 340 (544)
T ss_dssp CCBC-CSSSCCTTTSCSCTTCCEEEEEECCCSS
T ss_pred Cccc-ceeccchhcCcccccccccEEEECCCcC
Confidence 6542 1245554322 2235899999987764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.9e-07 Score=71.16 Aligned_cols=95 Identities=12% Similarity=-0.023 Sum_probs=57.9
Q ss_pred HHHHHHH-hccCCCCCCeEEEECCCC------CHHHHHHHH-hC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 57 ILAEYVW-QQRYRFSGANVVELGAGT------SLPGLVAAK-VG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 57 ~La~~l~-~~~~~~~~~~vLElGcGt------Gl~~l~~a~-~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
.+++|+. ......++.+|||||||+ |. ..+++ .+ ++|+++|+++. + . .+.+.
T Consensus 49 ~l~~~l~~~~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~---v---------~--~v~~~-- 110 (290)
T 2xyq_A 49 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF---V---------S--DADST-- 110 (290)
T ss_dssp HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC---B---------C--SSSEE--
T ss_pred HHHHHHHHhhcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC---C---------C--CCEEE--
Confidence 3666663 233445688999999955 65 33344 33 58999999973 1 1 23330
Q ss_pred EcCCCCcCCCCCCCcEEEEcCcCCC-----------CCChHHHHHHHHHhccCC
Q 030935 127 TWGFLDASIFDLNPNIILGADVFYD-----------ASGKICAFEILICSLFPI 169 (169)
Q Consensus 127 ~~~~~~~~~~~~~fDlIi~sd~iy~-----------~~~~~~l~~~l~~~L~p~ 169 (169)
..++........+||+|++...... ...++.+++.+.+.|+|+
T Consensus 111 i~gD~~~~~~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG 164 (290)
T 2xyq_A 111 LIGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 164 (290)
T ss_dssp EESCGGGCCCSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred EECccccCCccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence 2344433223468999998532111 122457899999999985
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=67.75 Aligned_cols=59 Identities=20% Similarity=0.085 Sum_probs=48.3
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.|.+.+..... .+|..|||++||+|.+++.+++.|.+++++|++ +.+++.+++|++...
T Consensus 223 ~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~--~~~~~~a~~r~~~~~ 281 (297)
T 2zig_A 223 ELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELV--PRYAQLAKERFAREV 281 (297)
T ss_dssp HHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHhc
Confidence 45555544332 467899999999999999999999999999999 579999999987653
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.31 E-value=8.5e-07 Score=77.57 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=60.0
Q ss_pred CCeEEEECCCCCHHHHHH---HH-hC---------C--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 71 GANVVELGAGTSLPGLVA---AK-VG---------S--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~---a~-~g---------a--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
++.|||+|||+|.++.++ ++ .+ . +|+++|.++ .++..++... .|+...++. +.-++.++-.
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp--~A~~~l~~~~-~Ng~~d~Vt-VI~gd~eev~ 485 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNP--NAIVTLKYMN-VRTWKRRVT-IIESDMRSLP 485 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCH--HHHHHHHHHH-HHTTTTCSE-EEESCGGGHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCCh--HHHHHHHHHH-hcCCCCeEE-EEeCchhhcc
Confidence 468999999999997543 32 23 2 899999994 3554444433 377654433 3445544322
Q ss_pred C------CCCCcEEEEcCcCCC--CCChHHHHHHHHHhccCC
Q 030935 136 F------DLNPNIILGADVFYD--ASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~------~~~fDlIi~sd~iy~--~~~~~~l~~~l~~~L~p~ 169 (169)
. +++.|+||+-=+=|. .+..+..+....+.|+|+
T Consensus 486 lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~ 527 (745)
T 3ua3_A 486 GIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPT 527 (745)
T ss_dssp HHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTT
T ss_pred cccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCC
Confidence 2 569999997433232 234556777778888885
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.25 E-value=4.7e-06 Score=74.02 Aligned_cols=78 Identities=10% Similarity=-0.067 Sum_probs=53.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-----CeEEEEcCCCcHHHHHHH--HHHHHHhCCc--ceEEEEEcCCCCc--CCCCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG-----SNVTLTDDSNRIEVLKNM--RRVCEMNKLN--CRVMGLTWGFLDA--SIFDL 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g-----a~V~~~D~~~~~~~l~~~--~~n~~~n~~~--~~~~~l~~~~~~~--~~~~~ 138 (169)
++.+|||.|||+|.+.+.+++.. .+++++|+++ .+++.| +.|+..|.+. .....+..++... .....
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp--~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~ 398 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIET--LFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA 398 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCG--GGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCH--HHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence 57799999999999999888753 3799999995 488888 7777654331 1111233344332 11235
Q ss_pred CCcEEEEcCcC
Q 030935 139 NPNIILGADVF 149 (169)
Q Consensus 139 ~fDlIi~sd~i 149 (169)
+||+||++.+.
T Consensus 399 kFDVVIgNPPY 409 (878)
T 3s1s_A 399 NVSVVVMNPPY 409 (878)
T ss_dssp TEEEEEECCBC
T ss_pred CCCEEEECCCc
Confidence 89999998877
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.6e-06 Score=65.32 Aligned_cols=117 Identities=15% Similarity=-0.033 Sum_probs=71.3
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
.+|...=.++..|.+...+ ....++.+|||||||+|..+..+++. ++ .|.+.|+..+ +....+.. ...+.+.
T Consensus 51 ~~~~YrSRaA~KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvD--l~~~pi~~-~~~g~~i-- 124 (277)
T 3evf_A 51 DTGVAVSRGTAKLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRD--GHEKPMNV-QSLGWNI-- 124 (277)
T ss_dssp SSCBCSSTHHHHHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TCCCCCCC-CBTTGGG--
T ss_pred cCCCccccHHHHHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEecc--Cccccccc-CcCCCCe--
Confidence 4588888899999999988 34456679999999999999988875 55 6888888742 21000000 0001111
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCC--hH-----HHHHHHHHhccCC
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASG--KI-----CAFEILICSLFPI 169 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~--~~-----~l~~~l~~~L~p~ 169 (169)
..+.-+.....+.+.+||+|+| |+--+... .+ .+++...+.|+|+
T Consensus 125 i~~~~~~dv~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG 176 (277)
T 3evf_A 125 ITFKDKTDIHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACG 176 (277)
T ss_dssp EEEECSCCTTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEeccceehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCC
Confidence 1122111112334568999998 55444322 11 2456777888885
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.9e-05 Score=63.35 Aligned_cols=76 Identities=16% Similarity=-0.058 Sum_probs=49.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-CCCCCCcEEEEc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDLNPNIILGA 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-~~~~~fDlIi~s 146 (169)
..+|.+||||||.+|..+..++++|++|+++|..+ |-..+. .+ . .+..+ .++.... ....+||+|+|
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~---l~~~l~----~~-~--~V~~~-~~d~~~~~~~~~~~D~vvs- 276 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP---MAQSLM----DT-G--QVTWL-REDGFKFRPTRSNISWMVC- 276 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC---CCHHHH----TT-T--CEEEE-CSCTTTCCCCSSCEEEEEE-
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh---cChhhc----cC-C--CeEEE-eCccccccCCCCCcCEEEE-
Confidence 34789999999999999999999999999999875 322211 11 1 22222 3333222 22358999998
Q ss_pred CcCCCCCCh
Q 030935 147 DVFYDASGK 155 (169)
Q Consensus 147 d~iy~~~~~ 155 (169)
|+.-++...
T Consensus 277 Dm~~~p~~~ 285 (375)
T 4auk_A 277 DMVEKPAKV 285 (375)
T ss_dssp CCSSCHHHH
T ss_pred cCCCChHHh
Confidence 554444333
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=61.52 Aligned_cols=61 Identities=20% Similarity=0.151 Sum_probs=48.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
..|.+.+.+... .+|..|||.+||+|..++++++.|.+++++|++ +..++.+++|++.+++
T Consensus 199 ~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~--~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMN--AEYVNQANFVLNQLEI 259 (260)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHHhccC
Confidence 445555554332 467899999999999999999999999999999 5699999999987654
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.91 E-value=2.5e-05 Score=60.69 Aligned_cols=99 Identities=17% Similarity=0.018 Sum_probs=60.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-------C-------CeEEEEcCCCc-HHHH-----------HHHHHHHHHhC-----
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-------G-------SNVTLTDDSNR-IEVL-----------KNMRRVCEMNK----- 118 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-------g-------a~V~~~D~~~~-~~~l-----------~~~~~n~~~n~----- 118 (169)
+..+|||+|+|+|+..+.+++. + .+++.+|..+. .+.+ +.++.+++...
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3458999999999998876543 2 27999998851 1233 34555554310
Q ss_pred -----Cc--ceEEEEEcCCCCcCCC--C----CCCcEEEEcCcCCC---CC-ChHHHHHHHHHhccCC
Q 030935 119 -----LN--CRVMGLTWGFLDASIF--D----LNPNIILGADVFYD---AS-GKICAFEILICSLFPI 169 (169)
Q Consensus 119 -----~~--~~~~~l~~~~~~~~~~--~----~~fDlIi~sd~iy~---~~-~~~~l~~~l~~~L~p~ 169 (169)
.. .....+.+++..+.+. + .+||+|+. |.+-- +. ..+.+++.+.+.|+|+
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~ifl-D~fsp~~~p~lw~~~~l~~l~~~L~pG 206 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFL-DGFAPAKNPDMWTQNLFNAMARLARPG 206 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEE-CSSCTTTCGGGCCHHHHHHHHHHEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEE-CCCCcccChhhcCHHHHHHHHHHcCCC
Confidence 10 1123355666433211 1 27999997 65321 11 2467999999999985
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.8e-05 Score=58.47 Aligned_cols=55 Identities=24% Similarity=0.064 Sum_probs=46.0
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCC
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSN 102 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~ 102 (169)
.|...=.++..|.+...+. ...++.+|||||||.|..+..+++ .++ .|+++|+..
T Consensus 68 ~g~YrSRAAfKL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~ 124 (282)
T 3gcz_A 68 NGIAVSRGSAKLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGV 124 (282)
T ss_dssp SSBCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCC
T ss_pred CCCEecHHHHHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEecc
Confidence 3777888999999999876 455677999999999999999885 455 799999975
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.81 E-value=9e-05 Score=58.67 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH-hCC---cceEEEEEcCCCCcCC--CCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-NKL---NCRVMGLTWGFLDASI--FDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~-n~~---~~~~~~l~~~~~~~~~--~~~~fD 141 (169)
..++||=||-|.|.+...+++.. .+|+++|++ +++++.+++-+.. +.. +.++. +..++....+ ...+||
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID--~~Vv~~a~~~lp~~~~~~~~dpRv~-v~~~Dg~~~l~~~~~~yD 159 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEID--AGVVSFCRQYLPNHNAGSYDDPRFK-LVIDDGVNFVNQTSQTFD 159 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESC--HHHHHHHHHHCHHHHTTGGGCTTEE-EEESCTTTTTSCSSCCEE
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCC--HHHHHHHHhcCccccccccCCCcEE-EEechHHHHHhhccccCC
Confidence 45799999999999999888853 489999999 6799999887532 221 12222 4444433322 235899
Q ss_pred EEEE--cCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 142 IILG--ADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~--sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
+||. .|...... .-.++++.+++.|+|+
T Consensus 160 vIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~ 191 (294)
T 3o4f_A 160 VIISDCTDPIGPGESLFTSAFYEGCKRCLNPG 191 (294)
T ss_dssp EEEESCCCCCCTTCCSSCCHHHHHHHHTEEEE
T ss_pred EEEEeCCCcCCCchhhcCHHHHHHHHHHhCCC
Confidence 9994 33332222 1367899999999984
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.76 E-value=2.5e-05 Score=61.44 Aligned_cols=83 Identities=14% Similarity=0.024 Sum_probs=55.1
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-- 135 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-- 135 (169)
|.+.+.......++..+||.+||.|.-+..+++.+.+|+++|.+ +.+++.+++ ++. ..+.+..-++.++....
T Consensus 10 Ll~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~D--p~Ai~~A~~-L~~--~rv~lv~~~f~~l~~~L~~ 84 (285)
T 1wg8_A 10 LYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQD--PEAVARAKG-LHL--PGLTVVQGNFRHLKRHLAA 84 (285)
T ss_dssp THHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHH-TCC--TTEEEEESCGGGHHHHHHH
T ss_pred HHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCC--HHHHHHHHh-hcc--CCEEEEECCcchHHHHHHH
Confidence 33444444344567899999999999999999887799999999 679999988 643 23333322232221111
Q ss_pred -CCCCCcEEEE
Q 030935 136 -FDLNPNIILG 145 (169)
Q Consensus 136 -~~~~fDlIi~ 145 (169)
...++|.|++
T Consensus 85 ~g~~~vDgIL~ 95 (285)
T 1wg8_A 85 LGVERVDGILA 95 (285)
T ss_dssp TTCSCEEEEEE
T ss_pred cCCCCcCEEEe
Confidence 1137898885
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00049 Score=54.33 Aligned_cols=117 Identities=13% Similarity=-0.047 Sum_probs=72.4
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
.+|...=.++..|.+...+ ....++++||||||++|..+..+++. ++ .|+++|+... +....+. ....+.+ +
T Consensus 58 ~~g~yrSRaa~KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~--~~~~P~~-~~~~~~~--i 131 (300)
T 3eld_A 58 DVGISVSRGAAKIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIE--GHEKPIH-MQTLGWN--I 131 (300)
T ss_dssp SSCCCSSTTHHHHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCT--TSCCCCC-CCBTTGG--G
T ss_pred cCCCccchHHHHHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccc--ccccccc-ccccCCc--e
Confidence 3477777889999999988 44557889999999999999999974 55 7999999742 1000000 0000111 1
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh-------HHHHHHHHHhccCC
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASGK-------ICAFEILICSLFPI 169 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~-------~~l~~~l~~~L~p~ 169 (169)
..+.-+.....+.+.++|+|+| |+--+.... -.|+....+.|+|+
T Consensus 132 v~~~~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG 183 (300)
T 3eld_A 132 VKFKDKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVN 183 (300)
T ss_dssp EEEECSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred EEeecCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222221111234568999998 655544332 24566677888875
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.73 E-value=7.3e-07 Score=70.21 Aligned_cols=93 Identities=8% Similarity=-0.090 Sum_probs=66.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC--CCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS--IFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~--~~~~~fDlIi~s 146 (169)
+.+..+||+-+|||.+|+.+.+.+.+++++|.+ +..++.+++|++.. -++++...+.-..... ....+||+|+.
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~--~~a~~~L~~Nl~~~-~~~~V~~~D~~~~L~~l~~~~~~fdLVfi- 165 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRSQDRLYLCELH--PTEYNFLLKLPHFN-KKVYVNHTDGVSKLNALLPPPEKRGLIFI- 165 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCS--HHHHHHHTTSCCTT-SCEEEECSCHHHHHHHHCSCTTSCEEEEE-
T ss_pred hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCC--HHHHHHHHHHhCcC-CcEEEEeCcHHHHHHHhcCCCCCccEEEE-
Confidence 356789999999999999999966799999999 56999999998752 2233322221110111 12247999997
Q ss_pred CcCCC-CCChHHHHHHHHHh
Q 030935 147 DVFYD-ASGKICAFEILICS 165 (169)
Q Consensus 147 d~iy~-~~~~~~l~~~l~~~ 165 (169)
|+-|. ...++.+++.|.+.
T Consensus 166 DPPYe~k~~~~~vl~~L~~~ 185 (283)
T 2oo3_A 166 DPSYERKEEYKEIPYAIKNA 185 (283)
T ss_dssp CCCCCSTTHHHHHHHHHHHH
T ss_pred CCCCCCCcHHHHHHHHHHHh
Confidence 99998 46888888888764
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.72 E-value=9.8e-05 Score=60.37 Aligned_cols=84 Identities=10% Similarity=-0.054 Sum_probs=51.8
Q ss_pred CCeEEEECCCCCHHHHHHHH--------h----C-----CeEEEEcCCCcHHHHHHHHHHHHHh-------------CCc
Q 030935 71 GANVVELGAGTSLPGLVAAK--------V----G-----SNVTLTDDSNRIEVLKNMRRVCEMN-------------KLN 120 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~--------~----g-----a~V~~~D~~~~~~~l~~~~~n~~~n-------------~~~ 120 (169)
.-+|+|||||+|-.++.++. . + .+|...|+..+ ....+=+++... +..
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~N--DFn~lF~~L~~~~~~~~~~~~~~~~~~~ 130 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSN--DFNTLFQLLPPLVSNTCMEECLAADGNR 130 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTS--CHHHHHHHSCCBCCCC--CCC---CCCB
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCcc--chHHHHhhhhhhhhhcchhhhccccCCC
Confidence 45899999999988887622 1 1 27999999865 333222222211 011
Q ss_pred ceEEEEEcCCCCcC-CCCCCCcEEEEcCcCCCCCChH
Q 030935 121 CRVMGLTWGFLDAS-IFDLNPNIILGADVFYDASGKI 156 (169)
Q Consensus 121 ~~~~~l~~~~~~~~-~~~~~fDlIi~sd~iy~~~~~~ 156 (169)
..+....-+.+... +++.+||+|+++-++||....+
T Consensus 131 ~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p 167 (374)
T 3b5i_A 131 SYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP 167 (374)
T ss_dssp CSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCC
T ss_pred ceEEEecChhhhcccCCCcceEEEEecceeeeeccCc
Confidence 12333444554443 3456999999999999987433
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00038 Score=59.30 Aligned_cols=90 Identities=11% Similarity=-0.052 Sum_probs=64.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---------------CCeEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---------------GSNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---------------ga~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
..++++|.+......+.+|+|-.||||.+-+.+.+. ...+.+.|++ +.+...++.|+..++..
T Consensus 203 ~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~--~~~~~la~mNl~lhg~~ 280 (530)
T 3ufb_A 203 RPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAK--SLPYLLVQMNLLLHGLE 280 (530)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCS--HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhcc--HHHHHHHHHHHHhcCCc
Confidence 345666666555567789999999999887766542 2369999999 56999999999999876
Q ss_pred ceEEEEEcCCCCcC-C----CCCCCcEEEEcCcC
Q 030935 121 CRVMGLTWGFLDAS-I----FDLNPNIILGADVF 149 (169)
Q Consensus 121 ~~~~~l~~~~~~~~-~----~~~~fDlIi~sd~i 149 (169)
.. .+.+++.... . ...+||+|+++.++
T Consensus 281 ~~--~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf 312 (530)
T 3ufb_A 281 YP--RIDPENSLRFPLREMGDKDRVDVILTNPPF 312 (530)
T ss_dssp CC--EEECSCTTCSCGGGCCGGGCBSEEEECCCS
T ss_pred cc--cccccccccCchhhhcccccceEEEecCCC
Confidence 32 2455554321 1 12389999998776
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00044 Score=56.71 Aligned_cols=86 Identities=15% Similarity=0.065 Sum_probs=53.0
Q ss_pred CCeEEEECCCCCHHHHHHHHh--------------C-----CeEEEEcCCCc--HHH---HHHHHHHHHH-hCC--cceE
Q 030935 71 GANVVELGAGTSLPGLVAAKV--------------G-----SNVTLTDDSNR--IEV---LKNMRRVCEM-NKL--NCRV 123 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~--------------g-----a~V~~~D~~~~--~~~---l~~~~~n~~~-n~~--~~~~ 123 (169)
.-+|+||||++|-.++.+... + .+|+..|+..+ -.+ +....+.+.. ++. ...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 358999999999988877654 1 26899998753 011 2222222222 221 2233
Q ss_pred EEEEcCCCCcCC-CCCCCcEEEEcCcCCCCCChH
Q 030935 124 MGLTWGFLDASI-FDLNPNIILGADVFYDASGKI 156 (169)
Q Consensus 124 ~~l~~~~~~~~~-~~~~fDlIi~sd~iy~~~~~~ 156 (169)
....-|.+.... ++.++|+|+++-++||....+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p 166 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVP 166 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSC
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCc
Confidence 434445554444 446999999999999976654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00046 Score=54.30 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-------CCeEEEEcCCCc---------H---------------HHHHHHHHHHHHhC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-------GSNVTLTDDSNR---------I---------------EVLKNMRRVCEMNK 118 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-------ga~V~~~D~~~~---------~---------------~~l~~~~~n~~~n~ 118 (169)
..++|||+|+..|..++.++.. +.+|+++|..+. + ..++.+++|++..+
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 3459999999999999887652 458999996421 0 14677899999888
Q ss_pred Cc-ceEEEEEcCCCCc---CCCCCCCcEEEEcCcCCCC-CChHHHHHHHHHhccCC
Q 030935 119 LN-CRVMGLTWGFLDA---SIFDLNPNIILGADVFYDA-SGKICAFEILICSLFPI 169 (169)
Q Consensus 119 ~~-~~~~~l~~~~~~~---~~~~~~fDlIi~sd~iy~~-~~~~~l~~~l~~~L~p~ 169 (169)
+. .++ .+..|+..+ .....+||+|.- |. +. ......++.+...|+||
T Consensus 186 l~~~~I-~li~Gda~etL~~~~~~~~d~vfI-Da--D~y~~~~~~Le~~~p~L~pG 237 (282)
T 2wk1_A 186 LLDEQV-RFLPGWFKDTLPTAPIDTLAVLRM-DG--DLYESTWDTLTNLYPKVSVG 237 (282)
T ss_dssp CCSTTE-EEEESCHHHHSTTCCCCCEEEEEE-CC--CSHHHHHHHHHHHGGGEEEE
T ss_pred CCcCce-EEEEeCHHHHHhhCCCCCEEEEEE-cC--CccccHHHHHHHHHhhcCCC
Confidence 73 333 244554432 222358999885 44 11 22446788888888775
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00016 Score=56.04 Aligned_cols=110 Identities=15% Similarity=-0.012 Sum_probs=66.4
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--C----CeEEEEc--CCCcHHHHHHHHHHHHHh
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--G----SNVTLTD--DSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--g----a~V~~~D--~~~~~~~l~~~~~n~~~n 117 (169)
++|...=.++..|.+.-.+. -..++.+||||||+.|..+..+++. . ..|+++| +.+. ...
T Consensus 50 ~~g~yRSRAayKL~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~-----------~~~ 117 (269)
T 2px2_A 50 VGGHPVSRGTAKLRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM-----------LMQ 117 (269)
T ss_dssp CCSCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC-----------CCC
T ss_pred cCCCcccHHHHHHHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC-----------ccc
Confidence 45777778899999888775 4556889999999999999999986 2 2455555 2220 000
Q ss_pred CCcceEEEEEcC-CCCcCCCCCCCcEEEEcCcCCCCCCh--HH-----HHHHHHHhccCC
Q 030935 118 KLNCRVMGLTWG-FLDASIFDLNPNIILGADVFYDASGK--IC-----AFEILICSLFPI 169 (169)
Q Consensus 118 ~~~~~~~~l~~~-~~~~~~~~~~fDlIi~sd~iy~~~~~--~~-----l~~~l~~~L~p~ 169 (169)
...+.+..+..+ ++.. ..+.++|+|+| |.=-+.... +. .+....+.|+|+
T Consensus 118 ~~Gv~~i~~~~G~Df~~-~~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~g 175 (269)
T 2px2_A 118 SYGWNIVTMKSGVDVFY-KPSEISDTLLC-DIGESSPSAEIEEQRTLRILEMVSDWLSRG 175 (269)
T ss_dssp STTGGGEEEECSCCGGG-SCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCceEEEeeccCCccC-CCCCCCCEEEe-CCCCCCCccHHHHHHHHHHHHHHHHHhhcC
Confidence 011223334444 5433 33458999997 543343221 11 344455667764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0014 Score=51.81 Aligned_cols=57 Identities=18% Similarity=0.014 Sum_probs=46.8
Q ss_pred CCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCC
Q 030935 45 EEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSN 102 (169)
Q Consensus 45 ~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~ 102 (169)
..+|..+-.++..|.+...+. ...++.+||||||++|..+..++. .|+ +|+++|+..
T Consensus 70 ~~~g~y~SR~~~KL~ei~~~~-~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~ 128 (321)
T 3lkz_A 70 VTGGHPVSRGTAKLRWLVERR-FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGG 128 (321)
T ss_dssp CSSCCCSSTHHHHHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCS
T ss_pred CcCCCccchHHHHHHHHHHhc-CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCC
Confidence 356888888999999888774 455777999999999999997766 566 699999985
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=51.85 Aligned_cols=71 Identities=13% Similarity=-0.032 Sum_probs=51.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC--CCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF--DLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~--~~~fDlIi~ 145 (169)
..+.+++||.||+|.+++.+.+.|. .|.++|++ +.+++..+.|..... .++...... -..+|+|++
T Consensus 9 ~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d--~~a~~t~~~N~~~~~---------~~Di~~~~~~~~~~~D~l~~ 77 (327)
T 2c7p_A 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWD--KYAQEVYEMNFGEKP---------EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCC--HHHHHHHHHHHSCCC---------BSCGGGSCGGGSCCCSEEEE
T ss_pred cCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCC--HHHHHHHHHHcCCCC---------cCCHHHcCHhhCCCCCEEEE
Confidence 4567999999999999999999998 48889999 568888888864211 233222111 126899998
Q ss_pred cCcCC
Q 030935 146 ADVFY 150 (169)
Q Consensus 146 sd~iy 150 (169)
..++.
T Consensus 78 gpPCQ 82 (327)
T 2c7p_A 78 GFPCQ 82 (327)
T ss_dssp ECCCT
T ss_pred CCCCC
Confidence 87765
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00095 Score=54.24 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=59.3
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCc-----ceEEE
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLN-----CRVMG 125 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~-----~~~~~ 125 (169)
.+|.+.+..+ ...+|.+|||++||.|.=+..++..+. .|++.|+++ .=++.+++|++..+.. ..+..
T Consensus 135 ~aS~l~~~~L----~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~--~R~~~l~~~l~r~~~~~~~~~~~v~v 208 (359)
T 4fzv_A 135 AASLLPVLAL----GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSP--SRIARLQKILHSYVPEEIRDGNQVRV 208 (359)
T ss_dssp GGGHHHHHHH----CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCH--HHHHHHHHHHHHHSCTTTTTSSSEEE
T ss_pred HHHHHHHHHh----CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCH--HHHHHHHHHHHHhhhhhhccCCceEE
Confidence 5666666555 234688999999999999998888765 799999994 5788889999877642 12222
Q ss_pred EEcCCCC-cCCCCCCCcEEEE
Q 030935 126 LTWGFLD-ASIFDLNPNIILG 145 (169)
Q Consensus 126 l~~~~~~-~~~~~~~fDlIi~ 145 (169)
..+.... ......+||.|+.
T Consensus 209 ~~~D~~~~~~~~~~~fD~VLl 229 (359)
T 4fzv_A 209 TSWDGRKWGELEGDTYDRVLV 229 (359)
T ss_dssp ECCCGGGHHHHSTTCEEEEEE
T ss_pred EeCchhhcchhccccCCEEEE
Confidence 2222111 1123458999995
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0032 Score=48.37 Aligned_cols=100 Identities=14% Similarity=-0.010 Sum_probs=63.0
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.|...-.++..|.+...+. ...++.+||||||++|-.+..++. .|+ +|+++|+-.. .-.+ - ...+..+ ....
T Consensus 56 ~g~yrSRa~~KL~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~-ghe~-P-~~~~s~g--wn~v 129 (267)
T 3p8z_A 56 THHAVSRGSAKLQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGP-GHEE-P-VPMSTYG--WNIV 129 (267)
T ss_dssp SSCCSSTHHHHHHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCST-TSCC-C-CCCCCTT--TTSE
T ss_pred CCCccchHHHHHHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCC-CccC-c-chhhhcC--cCce
Confidence 4777777899999888877 456777999999999999997776 465 7999999852 0000 0 0000011 1123
Q ss_pred EEEcC-CCCcCCCCCCCcEEEEcCcCCCCCC
Q 030935 125 GLTWG-FLDASIFDLNPNIILGADVFYDASG 154 (169)
Q Consensus 125 ~l~~~-~~~~~~~~~~fDlIi~sd~iy~~~~ 154 (169)
.+..+ ++. ...+.++|.|+| |+=-....
T Consensus 130 ~fk~gvDv~-~~~~~~~Dtllc-DIgeSs~~ 158 (267)
T 3p8z_A 130 KLMSGKDVF-YLPPEKCDTLLC-DIGESSPS 158 (267)
T ss_dssp EEECSCCGG-GCCCCCCSEEEE-CCCCCCSC
T ss_pred EEEecccee-ecCCccccEEEE-ecCCCCCC
Confidence 34444 322 223468999998 55545544
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00025 Score=57.66 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=54.4
Q ss_pred CeEEEECCCCCHHHHHHHHh------------C------CeEEEEcCCCcHHHHHHHHHHHHHhC--CcceEEEEEcCCC
Q 030935 72 ANVVELGAGTSLPGLVAAKV------------G------SNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFL 131 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~------------g------a~V~~~D~~~~~~~l~~~~~n~~~n~--~~~~~~~l~~~~~ 131 (169)
-+|+||||++|-.++.+... + .+|+..|+..+ ....+-+++.... ....+....-|.+
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~N--DFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGN--DFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTS--CHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCch--HHHHHHHhcchhcccCCCEEEEecchhh
Confidence 47999999999777655443 2 27999999876 6665555543210 0122333445665
Q ss_pred CcCC-CCCCCcEEEEcCcCCCCCChH
Q 030935 132 DASI-FDLNPNIILGADVFYDASGKI 156 (169)
Q Consensus 132 ~~~~-~~~~fDlIi~sd~iy~~~~~~ 156 (169)
...+ ++.++|+|+++-.+||....+
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p 156 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVP 156 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCC
T ss_pred hhccCCCCceEEEEehhhhhhcccCc
Confidence 4444 456999999999999876543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00059 Score=55.81 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=63.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHH-hC--Cc---ceEEEEEcCCCCcCC-----CC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEM-NK--LN---CRVMGLTWGFLDASI-----FD 137 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~-n~--~~---~~~~~l~~~~~~~~~-----~~ 137 (169)
+.++||=||-|.|.....+.+... +|+++|++ +++++.+++-+.. ++ .+ .....+..++..... ..
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEID--p~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~ 282 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEID--QMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG 282 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESC--HHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccC--HHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence 467999999999999998888654 89999999 6799999876421 11 11 111224444432211 23
Q ss_pred CCCcEEEEcCcCCCC--C---------ChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDA--S---------GKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~--~---------~~~~l~~~l~~~L~p~ 169 (169)
.+||+||. |+.-.. . ....+++.+++.|+|+
T Consensus 283 ~~yDvIIv-Dl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~ 324 (381)
T 3c6k_A 283 REFDYVIN-DLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD 324 (381)
T ss_dssp CCEEEEEE-ECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE
T ss_pred CceeEEEE-CCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC
Confidence 48999995 543211 0 1256789999999884
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.004 Score=50.80 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=49.9
Q ss_pred CeEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC-----CCCCCcEEE
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI-----FDLNPNIIL 144 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~-----~~~~fDlIi 144 (169)
-+++||.||+|.+++.+.+.|.+ |.++|++ +.+++..+.|.. ...+...+..+... .+ ....+|+|+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d--~~a~~t~~~N~~----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ 76 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEID--QHAINTHAINFP----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGII 76 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSC--HHHHHHHHHHCT----TSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCC--HHHHHHHHHhCC----CCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence 47999999999999999999995 7799999 457777776643 22222122221111 01 235899999
Q ss_pred EcCcCCC
Q 030935 145 GADVFYD 151 (169)
Q Consensus 145 ~sd~iy~ 151 (169)
+..++..
T Consensus 77 ggpPCQ~ 83 (376)
T 3g7u_A 77 GGPPCQG 83 (376)
T ss_dssp ECCCCCT
T ss_pred ecCCCCC
Confidence 9888653
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0046 Score=50.06 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=36.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHH
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~ 114 (169)
++..|||+|.|.|.++..++.. +.+|++++++ ++++..+++..
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D--~~l~~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR--SSLYKFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCC--HHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecC--HHHHHHHHHhc
Confidence 3578999999999999999986 4599999999 56888887765
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.013 Score=48.17 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=39.8
Q ss_pred CCCCeEEEECCCCCHHHHHHH-HhC---CeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 69 FSGANVVELGAGTSLPGLVAA-KVG---SNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a-~~g---a~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
.++..++|+||+.|..++.++ +.+ ++|++.|-+ |..++.+++|++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~--p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPD--RINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCC--HHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCC--HHHHHHHHHHHHh
Confidence 366789999999999999887 443 489999999 6799999999998
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0093 Score=47.25 Aligned_cols=98 Identities=14% Similarity=0.039 Sum_probs=54.1
Q ss_pred HHHHHHHHh-ccCCCCCCeEEEECCCCC---HHH-HHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE
Q 030935 56 VILAEYVWQ-QRYRFSGANVVELGAGTS---LPG-LVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT 127 (169)
Q Consensus 56 ~~La~~l~~-~~~~~~~~~vLElGcGtG---l~~-l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~ 127 (169)
.-|++|+.. ..-...|.+|||||||+- .+| ..+.+. |+.|+++|+.+- .. ... + ..
T Consensus 94 tqlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~---~s---------da~--~--~I 157 (344)
T 3r24_A 94 TQLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF---VS---------DAD--S--TL 157 (344)
T ss_dssp HHHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC---BC---------SSS--E--EE
T ss_pred HHHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccc---cc---------CCC--e--EE
Confidence 356777743 223346889999998421 122 333333 458999999973 10 111 1 13
Q ss_pred cCCCCcCCCCCCCcEEEEcCcCCCC-----------CChHHHHHHHHHhccCC
Q 030935 128 WGFLDASIFDLNPNIILGADVFYDA-----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~~~~~fDlIi~sd~iy~~-----------~~~~~l~~~l~~~L~p~ 169 (169)
.|+........+||+||+-..--.. ...+.++....+.|+||
T Consensus 158 qGD~~~~~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpG 210 (344)
T 3r24_A 158 IGDCATVHTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 210 (344)
T ss_dssp ESCGGGEEESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred EccccccccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCC
Confidence 3443322234689999963322211 12456666677788874
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0012 Score=65.29 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=42.2
Q ss_pred CCeEEEECCCCCHHHHHHHH-hC------CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcE
Q 030935 71 GANVVELGAGTSLPGLVAAK-VG------SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNI 142 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~-~g------a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDl 142 (169)
..+|||+|+|+|.....+.+ .+ .+.+.||++.. ..+.+++.++.. .+..-.|..... ......||+
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~--~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQ--ALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSS--STTTTTTTHHHH----TEEEECCCSSCCCC-----CCE
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChH--HHHHHHHHhhhc----ccccccccccccccCCCCceeE
Confidence 45899999999965433222 22 26899999964 776776665432 122222322111 113347999
Q ss_pred EEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
||++.+++...+....++.+...|+|+
T Consensus 1315 via~~vl~~t~~~~~~l~~~~~lL~p~ 1341 (2512)
T 2vz8_A 1315 LVCNCALATLGDPAVAVGNMAATLKEG 1341 (2512)
T ss_dssp EEEECC--------------------C
T ss_pred EEEcccccccccHHHHHHHHHHhcCCC
Confidence 999999998889999999999999986
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0085 Score=47.67 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=47.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
..|.+.+.+.. ..+|..|||-.||+|..++++.+.|.+.+++|++ +..++.++++++..+.
T Consensus 239 ~~l~~~~i~~~-~~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~--~~~~~~~~~r~~~~~~ 299 (323)
T 1boo_A 239 AKLPEFFIRML-TEPDDLVVDIFGGSNTTGLVAERESRKWISFEMK--PEYVAASAFRFLDNNI 299 (323)
T ss_dssp THHHHHHHHHH-CCTTCEEEETTCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHGGGSCSCS
T ss_pred HHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCC--HHHHHHHHHHHHhccc
Confidence 34555554432 2367899999999999999999999999999999 5688888888765543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.016 Score=46.16 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=47.1
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCc-HHHHHHHHHHHHHhC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNR-IEVLKNMRRVCEMNK 118 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~-~~~l~~~~~n~~~n~ 118 (169)
-...|.+.+.+.. ..+|..|||--||+|..++++.+.|.+.+++|+++. ...++.++++++..+
T Consensus 227 kp~~l~~~~i~~~-~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 227 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHh-CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 3455666665543 236789999999999999999999999999999950 048888888876543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.014 Score=46.90 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=48.3
Q ss_pred CeEEEECCCCCHHHHHHHHhC--C-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC----CCCCCcEEE
Q 030935 72 ANVVELGAGTSLPGLVAAKVG--S-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI----FDLNPNIIL 144 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~g--a-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~----~~~~fDlIi 144 (169)
.+|+||.||+|.+++.+.+.| + .|.++|++ +.+++..+.|.... . +..++..... ....+|+|+
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d--~~a~~~~~~N~~~~----~---~~~~Di~~~~~~~~~~~~~D~l~ 73 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVN--TVANEVYKYNFPHT----Q---LLAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCC--HHHHHHHHHHCTTS----C---EECSCGGGCCHHHHHHHCCSEEE
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCC--HHHHHHHHHhcccc----c---cccCCHHHccHhHcCcCCcCEEE
Confidence 479999999999999999998 4 59999999 45888888876421 1 1223332211 112689999
Q ss_pred EcCcCC
Q 030935 145 GADVFY 150 (169)
Q Consensus 145 ~sd~iy 150 (169)
+..+..
T Consensus 74 ~gpPCq 79 (343)
T 1g55_A 74 MSPPCQ 79 (343)
T ss_dssp ECCC--
T ss_pred EcCCCc
Confidence 987753
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.007 Score=48.44 Aligned_cols=71 Identities=18% Similarity=-0.002 Sum_probs=48.6
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--e-E-EEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCCCCCcEE
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS--N-V-TLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFDLNPNII 143 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga--~-V-~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~~~fDlI 143 (169)
-+++||.||.|.+++.+.+.|. + | .++|++ +.+.+..+.|.... ...++.... +....+|++
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d--~~a~~ty~~N~~~~--------~~~~DI~~~~~~~i~~~~~Dil 80 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSININATFIPFDIN--EIANKIYSKNFKEE--------VQVKNLDSISIKQIESLNCNTW 80 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCC--HHHHHHHHHHHCCC--------CBCCCTTTCCHHHHHHTCCCEE
T ss_pred CEEEEECCChhHHHHHHHHcCCCceEEEEEEECC--HHHHHHHHHHCCCC--------cccCChhhcCHHHhccCCCCEE
Confidence 4899999999999999999883 4 5 699999 45777777776322 112232211 111268999
Q ss_pred EEcCcCCCC
Q 030935 144 LGADVFYDA 152 (169)
Q Consensus 144 i~sd~iy~~ 152 (169)
+++-+...-
T Consensus 81 ~ggpPCQ~f 89 (327)
T 3qv2_A 81 FMSPPCQPY 89 (327)
T ss_dssp EECCCCTTC
T ss_pred EecCCccCc
Confidence 988876533
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.039 Score=43.47 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=47.3
Q ss_pred eEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC--CCCCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF--DLNPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~--~~~fDlIi~sd~i 149 (169)
+||||-||.|.+++.+.+.|.+ |.++|+++. +.+.-+.|.. .. +..++...-.. -.++|++++.-++
T Consensus 2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~--a~~ty~~N~~-----~~---~~~~DI~~i~~~~~~~~D~l~ggpPC 71 (331)
T 3ubt_Y 2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKS--IWKTYESNHS-----AK---LIKGDISKISSDEFPKCDGIIGGPPS 71 (331)
T ss_dssp EEEEESCTTCHHHHHHHHTTCEEEEEEECCTT--THHHHHHHCC-----SE---EEESCGGGCCGGGSCCCSEEECCCCG
T ss_pred eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHH--HHHHHHHHCC-----CC---cccCChhhCCHhhCCcccEEEecCCC
Confidence 6999999999999999999985 779999964 6666665532 12 22344322111 1378999988877
Q ss_pred C
Q 030935 150 Y 150 (169)
Q Consensus 150 y 150 (169)
.
T Consensus 72 Q 72 (331)
T 3ubt_Y 72 Q 72 (331)
T ss_dssp G
T ss_pred C
Confidence 5
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.03 Score=44.13 Aligned_cols=72 Identities=13% Similarity=0.038 Sum_probs=47.6
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCe---EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CC-CCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSN---VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IF-DLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~---V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~-~~~fD 141 (169)
...+++||-||.|.+++.+.+.|.+ |.++|+++ .+.+..+.|.. ...+. .++.... +. ...+|
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~--~a~~ty~~N~~----~~~~~---~~DI~~i~~~~i~~~~~~D 85 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCE--DSITVGMVRHQ----GKIMY---VGDVRSVTQKHIQEWGPFD 85 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCH--HHHHHHHHHTT----TCEEE---ECCGGGCCHHHHHHTCCCS
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCH--HHHHHHHHhCC----CCcee---CCChHHccHHHhcccCCcC
Confidence 3458999999999999999999974 58999994 46666565532 21122 2333221 11 13689
Q ss_pred EEEEcCcCC
Q 030935 142 IILGADVFY 150 (169)
Q Consensus 142 lIi~sd~iy 150 (169)
+|+++-+..
T Consensus 86 ll~ggpPCQ 94 (295)
T 2qrv_A 86 LVIGGSPCN 94 (295)
T ss_dssp EEEECCCCG
T ss_pred EEEecCCCc
Confidence 999887664
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.088 Score=43.05 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHHh--------CC-eEEEEcCCCcHHHHHHHHHHH
Q 030935 55 SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV--------GS-NVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 55 ~~~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~~--------ga-~V~~~D~~~~~~~l~~~~~n~ 114 (169)
+..++.|+.+. ......-.|+|+|+|.|.+..-+.+. .. ++..+|.|+ .+.+.-++++
T Consensus 62 Ge~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp--~Lr~~Q~~~L 131 (387)
T 1zkd_A 62 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP--VLRQKQQTLL 131 (387)
T ss_dssp HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH--HHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCH--HHHHHHHHHh
Confidence 56677776542 22222347999999999887644331 22 799999994 4555444433
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.025 Score=45.33 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=46.8
Q ss_pred eEEEECCCCCHHHHHHHHhCC--e-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEEEcCc
Q 030935 73 NVVELGAGTSLPGLVAAKVGS--N-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILGADV 148 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga--~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~ 148 (169)
+++||.||.|.+++.+.+.|. + |.++|+++ .+.+..+.|.. ...+..-+..+... .+....+|+++++-+
T Consensus 5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~--~a~~ty~~N~~----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP 78 (333)
T 4h0n_A 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINT--VANSVYKHNFP----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP 78 (333)
T ss_dssp EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCH--HHHHHHHHHCT----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred EEEEECcCccHHHHHHHHcCCCceEEEEEeCCH--HHHHHHHHhCC----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence 799999999999999999885 4 78999994 46666666543 22222112222111 111126899998877
Q ss_pred CC
Q 030935 149 FY 150 (169)
Q Consensus 149 iy 150 (169)
..
T Consensus 79 CQ 80 (333)
T 4h0n_A 79 CQ 80 (333)
T ss_dssp CC
T ss_pred Cc
Confidence 65
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.17 Score=39.88 Aligned_cols=57 Identities=21% Similarity=0.163 Sum_probs=39.4
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+.+...+.+.+......+|.+||=.|||. |+..+.+++ .|++|+++|.++ +-++.++
T Consensus 149 ~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~ 207 (340)
T 3s2e_A 149 LCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDD--AKLNLAR 207 (340)
T ss_dssp GTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred cchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCH--HHHHHHH
Confidence 34444455555555566888999999974 777776666 588999999984 4555544
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.12 Score=41.81 Aligned_cols=48 Identities=25% Similarity=0.232 Sum_probs=33.6
Q ss_pred HHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 62 VWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
........+|.+||-+|||. |+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 177 al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~ 227 (398)
T 2dph_A 177 GCVSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNP--ERLKLLS 227 (398)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHH
Confidence 33334456789999999874 666666666 688 899999984 4555543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.24 Score=39.60 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=42.7
Q ss_pred EEEeccccCCcceeecchHHHHHHHHH-hccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVW-QQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~-~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+++.++.....+. ..+.+...+.+.. +.....+|.+||-+|||. |+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 157 ~~iP~~~~~~~aa-~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~--~~~~~a~ 232 (371)
T 1f8f_A 157 VKVTKDVPIELLG-PLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE--SRLELAK 232 (371)
T ss_dssp EEECTTSCGGGTG-GGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHH
T ss_pred EECCCCCCHHHHH-HhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH--HHHHHHH
Confidence 4444444333222 2333444444433 444556789999999874 666666665 688 699999884 4555554
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.17 Score=41.95 Aligned_cols=59 Identities=24% Similarity=0.178 Sum_probs=38.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH----hC---CeEEEEcCCCcHHHHHHHHHHHH
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK----VG---SNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~----~g---a~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+..++.|+.+.-......+|+|+|+|+|.+..-+.+ .+ .++..+|.|+. +-+.-++++.
T Consensus 122 Ge~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~--Lr~~Q~~~L~ 187 (432)
T 4f3n_A 122 AQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGE--LRARQRETLG 187 (432)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHH--HHHHHHHHHh
Confidence 456777765432211235899999999988764433 22 27999999964 5555555554
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.51 E-value=0.099 Score=42.06 Aligned_cols=52 Identities=8% Similarity=-0.022 Sum_probs=39.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHH
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~ 111 (169)
|.+-+.......+|..++|..||.|.-+..+++. + .+|++.|.+ +.+++.++
T Consensus 45 Ll~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~D--p~Al~~A~ 99 (347)
T 3tka_A 45 LLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRD--PQAIAVAK 99 (347)
T ss_dssp TTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHT
T ss_pred cHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECC--HHHHHHHH
Confidence 3333444444557889999999999999988875 3 389999999 56898874
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.62 Score=37.60 Aligned_cols=109 Identities=17% Similarity=0.050 Sum_probs=67.5
Q ss_pred CcceeecchHHHHHHHHHhccCC-CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcce-E
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYR-FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCR-V 123 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~-~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~-~ 123 (169)
.-..+-|+++- +|++++... ..+.+||-++.+.|.+++.++..+. ...+| | .-....++.|++.|++... +
T Consensus 16 ~~~l~a~da~d---~~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~d-s--~~~~~~~~~n~~~~~~~~~~~ 88 (375)
T 4dcm_A 16 VNPLQAWEAAD---EYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-YSIGD-S--YISELATRENLRLNGIDESSV 88 (375)
T ss_dssp SCSCCSCCHHH---HHHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGCC-EEEES-C--HHHHHHHHHHHHHTTCCGGGS
T ss_pred CCCCCccchHH---HHHHHhhhhccCCCCEEEECCCCCHHHHhhccCCc-eEEEh-H--HHHHHHHHHHHHHcCCCccce
Confidence 45678899864 455554322 2456899999999999998876543 23345 3 2344578899999998642 3
Q ss_pred EEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHH---HHHHHHHhccCC
Q 030935 124 MGLTWGFLDASIFDLNPNIILGADVFYDASGKIC---AFEILICSLFPI 169 (169)
Q Consensus 124 ~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~---l~~~l~~~L~p~ 169 (169)
..+...+ .....||+|+- |.+..... .+..+...|+|+
T Consensus 89 ~~~~~~~----~~~~~~~~v~~----~lpk~~~~l~~~L~~l~~~l~~~ 129 (375)
T 4dcm_A 89 KFLDSTA----DYPQQPGVVLI----KVPKTLALLEQQLRALRKVVTSD 129 (375)
T ss_dssp EEEETTS----CCCSSCSEEEE----ECCSCHHHHHHHHHHHHTTCCTT
T ss_pred Eeccccc----ccccCCCEEEE----EcCCCHHHHHHHHHHHHhhCCCC
Confidence 3333322 12347899885 55555444 455555555553
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.23 Score=39.28 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=36.5
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+.+...+.+........+|.+||=+|+|. |+..+.+|+ .|++|++++.++. -++.++
T Consensus 159 ~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~--~~~~~~ 217 (348)
T 3two_A 159 LCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEH--KKQDAL 217 (348)
T ss_dssp GTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSST--THHHHH
T ss_pred hhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHH--HHHHHH
Confidence 33444444444444566889999999863 555555555 5889999998863 444443
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.48 Score=37.92 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=42.2
Q ss_pred EEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
+++.++.....+. .......+.+........+|.+||=.|+|. |+.++.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 151 ~~~P~~~~~~~aa--l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~ 225 (370)
T 4ej6_A 151 FEIPLTLDPVHGA--FCEPLACCLHGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQA--TKRRLAEE 225 (370)
T ss_dssp EEECTTSCTTGGG--GHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH--HHHHHHHH
T ss_pred EECCCCCCHHHHh--hhhHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHH
Confidence 4444444444443 333333444444444556788999999862 555555555 588 899999984 45555443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.23 E-value=0.42 Score=38.51 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=32.7
Q ss_pred HHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 62 VWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
........+|.+||=+|||. |+.++.+|+ +|+ +|+++|.++ +-++.++
T Consensus 177 al~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~--~~~~~a~ 227 (398)
T 1kol_A 177 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP--ARLAHAK 227 (398)
T ss_dssp HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHH
T ss_pred HHHHcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCH--HHHHHHH
Confidence 33334455788999999863 666666666 588 799999984 4555554
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.47 Score=37.85 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=41.6
Q ss_pred EEEeccccCCcceeecchHHHHHHHHH-hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 37 IAIIENMKEEYGLFVWPCSVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 37 i~i~~~~~~~~g~~~W~~~~~La~~l~-~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+++.++.... + ...+.+...+.... +.....+|.+||=+|+| .|+..+.+|+ .|+ +|+++|.++. -++.++
T Consensus 159 ~~iP~~l~~~-a-a~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~ 233 (373)
T 1p0f_A 159 AKIDPKAPLE-S-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAI 233 (373)
T ss_dssp EEECTTCCGG-G-GGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHH
T ss_pred EECCCCCChh-h-hhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHH--HHHHHH
Confidence 4555554444 3 33344444444333 34455678899999976 3555555555 588 8999998853 444443
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.58 Score=35.81 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=52.7
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++||.+|==|++.|+ ++..+++.|++|+++|.+ ++-++.+.+.++..+.++.....+..+... ... -
T Consensus 5 L~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~--~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 82 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELL--EDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETY 82 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 589999999988875 334556679999999998 457777777777777665544444443211 000 1
Q ss_pred CCCcEEEEcCcC
Q 030935 138 LNPNIILGADVF 149 (169)
Q Consensus 138 ~~fDlIi~sd~i 149 (169)
.+.|+++.+-=+
T Consensus 83 G~iDiLVNNAGi 94 (254)
T 4fn4_A 83 SRIDVLCNNAGI 94 (254)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 378999976543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.96 E-value=0.34 Score=38.81 Aligned_cols=52 Identities=17% Similarity=0.144 Sum_probs=33.8
Q ss_pred HHHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
.+.+........+|.+||-+|+|. |+..+.+|+ .|++|++++.++. -++.++
T Consensus 182 tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~--~~~~a~ 235 (369)
T 1uuf_A 182 TTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA--KREAAK 235 (369)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG--GHHHHH
T ss_pred HHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHH--HHHHHH
Confidence 333444334455788999999863 555555555 5889999998853 455544
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.65 Score=35.18 Aligned_cols=101 Identities=17% Similarity=0.109 Sum_probs=51.3
Q ss_pred eecchHHHHHHHHHhccCCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE
Q 030935 50 FVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL 126 (169)
Q Consensus 50 ~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l 126 (169)
++|-+.-.-.-|+..+.-.+++++||=.|++.|+- ...+++.|++|++++.+. ++..+.+++.++..+..+.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~ 86 (271)
T 4iin_A 8 SSGVDLGTENLYFQSNAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSN-AEVADALKNELEEKGYKAAVIKF 86 (271)
T ss_dssp ----------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccccccCcceehhhhhhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCceEEEEC
Confidence 34444322233444444456888999888776642 234455689999999854 45666666666666655554444
Q ss_pred EcCCCCc--CCC------CCCCcEEEEcCcCCC
Q 030935 127 TWGFLDA--SIF------DLNPNIILGADVFYD 151 (169)
Q Consensus 127 ~~~~~~~--~~~------~~~fDlIi~sd~iy~ 151 (169)
+..+... ... ..++|++|.+--+..
T Consensus 87 D~~~~~~v~~~~~~~~~~~g~id~li~nAg~~~ 119 (271)
T 4iin_A 87 DAASESDFIEAIQTIVQSDGGLSYLVNNAGVVR 119 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHHSSCCEEEECCCCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 4333211 000 137899997665543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.46 Score=37.79 Aligned_cols=55 Identities=16% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+...+.+.+......+|.+||-+|+| .|+..+.+++ .|++|++++.++. -++.++
T Consensus 164 ~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~--~~~~~~ 220 (360)
T 1piw_A 164 GGLTVYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KREDAM 220 (360)
T ss_dssp HHHHHHHHHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--THHHHH
T ss_pred hHHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH--HHHHHH
Confidence 33333444444455678999999985 3455555554 6889999998753 444444
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=91.37 E-value=0.53 Score=37.23 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=35.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
...+.+..+.....+|.+||=+|+|. |+..+.+|+ .|+ +|+++|.++ +-++.+++
T Consensus 152 ~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~--~~~~~~~~ 209 (352)
T 3fpc_A 152 MTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRK--HCCDIALE 209 (352)
T ss_dssp HHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCH--HHHHHHHH
T ss_pred hHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCH--HHHHHHHH
Confidence 33344444445566788999999762 555555555 587 799999984 34555443
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=91.34 E-value=0.51 Score=37.43 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=31.5
Q ss_pred hccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.....+|.+||-+|+|. |+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~ 213 (356)
T 1pl8_A 165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA--TRLSKAK 213 (356)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHH
Confidence 333456788999999863 555565565 588 899999884 3445443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.5 Score=36.71 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=37.0
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
.+.+...|.+.+......+|.+||=+|+| .|+..+.+|+ .|++|++++ ++. -++.++
T Consensus 124 l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~--~~~~~~ 182 (315)
T 3goh_A 124 LPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASL--SQALAA 182 (315)
T ss_dssp SHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSC--CHHHHH
T ss_pred CccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-Chh--hHHHHH
Confidence 33444555555555556688999999995 3555555555 688999999 643 344443
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=91.16 E-value=1.3 Score=33.84 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=52.3
Q ss_pred ccCCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCC
Q 030935 65 QRYRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDL 138 (169)
Q Consensus 65 ~~~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~ 138 (169)
++..++||.+|==|++.|+- +..+++.|++|+++|.+.. +.+.+.++..+.+......+..+... .....
T Consensus 3 n~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~----~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g 78 (247)
T 4hp8_A 3 NPFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP----DETLDIIAKDGGNASALLIDFADPLAAKDSFTDA 78 (247)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC----HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTT
T ss_pred CCcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH----HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhC
Confidence 34457899999999888753 4456678999999999853 22333345556655554454443221 11224
Q ss_pred CCcEEEEcCcCCCC
Q 030935 139 NPNIILGADVFYDA 152 (169)
Q Consensus 139 ~fDlIi~sd~iy~~ 152 (169)
+.|+++.+-=+...
T Consensus 79 ~iDiLVNNAGi~~~ 92 (247)
T 4hp8_A 79 GFDILVNNAGIIRR 92 (247)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CCCEEEECCCCCCC
Confidence 78999976655443
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.75 Score=36.59 Aligned_cols=57 Identities=33% Similarity=0.455 Sum_probs=36.6
Q ss_pred chHHHHHHHHH-hccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 53 PCSVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 53 ~~~~~La~~l~-~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+.+...+.+.. +.....+|.+||=+|+| .|+..+.+++ .|++|++++.++ +-++.++
T Consensus 171 ~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~ 230 (363)
T 3uog_A 171 PCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR--EKLDRAF 230 (363)
T ss_dssp TTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred ccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCc--hhHHHHH
Confidence 33444444444 34456678999999976 2555555555 588999999883 3455443
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=90.82 E-value=0.39 Score=40.32 Aligned_cols=41 Identities=12% Similarity=0.069 Sum_probs=34.1
Q ss_pred CeEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~ 114 (169)
-+++||.||.|.+++.+.+.|.+ |.++|++ +.+.+.-+.|.
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d--~~A~~ty~~N~ 130 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWN--KHAVRTYKANH 130 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEEEEECCC--HHHHHHHHHHS
T ss_pred ceEEEecCCccHHHHHHHHCCCEEEEEEeCC--HHHHHHHHHhc
Confidence 47999999999999999998885 8999999 44666666664
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=90.79 E-value=0.7 Score=36.41 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=29.9
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-h--CCeEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-V--GSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~--ga~V~~~D~~~~~~~l~~~~ 111 (169)
.. +|.+||=+|+| .|+..+.+|+ . |++|++++.++ +-++.++
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~--~~~~~~~ 213 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSK--KHRDFAL 213 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCH--HHHHHHH
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCH--HHHHHHH
Confidence 45 88999999986 2555555555 6 89999999884 3455544
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.74 Score=35.23 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=53.0
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC--C
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--~ 136 (169)
.++||++|=-|++.|+- +..+++.|++|+++|.+ ++.++.+.+.+...+.++.....+..+... .. .
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~--~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIR--ATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSC--HHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 46899999999887743 34556679999999998 456666666666666554433333332111 00 1
Q ss_pred CCCCcEEEEcCcCCCCC
Q 030935 137 DLNPNIILGADVFYDAS 153 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~ 153 (169)
-.+.|+++.+-=+....
T Consensus 84 ~G~iDiLVNNAG~~~~~ 100 (255)
T 4g81_D 84 GIHVDILINNAGIQYRK 100 (255)
T ss_dssp TCCCCEEEECCCCCCCC
T ss_pred CCCCcEEEECCCCCCCC
Confidence 13789999776555443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.93 Score=35.63 Aligned_cols=51 Identities=24% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+.+........+|.+||-+|+| .|+..+.+++ .|++|++++.++ +-++.++
T Consensus 153 a~~~l~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~ 205 (339)
T 1rjw_A 153 TYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD--EKLELAK 205 (339)
T ss_dssp HHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH--HHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHH
Confidence 3344433345678899999996 3555555554 588999999984 4555544
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=90.21 E-value=0.98 Score=35.72 Aligned_cols=96 Identities=11% Similarity=0.102 Sum_probs=51.9
Q ss_pred CeEEEECCCCCHHHHHHHH----hC--C--eEEEEcCCCc------HHHHHHHHHHHHHh-----CCcceEEEEEcCCCC
Q 030935 72 ANVVELGAGTSLPGLVAAK----VG--S--NVTLTDDSNR------IEVLKNMRRVCEMN-----KLNCRVMGLTWGFLD 132 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~----~g--a--~V~~~D~~~~------~~~l~~~~~n~~~n-----~~~~~~~~l~~~~~~ 132 (169)
-+|||+|-|||+-.+.+.+ .+ . +.+.+|..+. ++.+..+...+..+ +..+. ..+.+|+..
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~-L~l~~GDa~ 176 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLS-LKVLLGDAR 176 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEE-EEEEESCHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEE-EEEEechHH
Confidence 4799999999997665432 23 2 4556664320 01112211112111 12222 346677754
Q ss_pred cCC---CCCCCcEEEEcCcCCCCCCh----HHHHHHHHHhccCC
Q 030935 133 ASI---FDLNPNIILGADVFYDASGK----ICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~---~~~~fDlIi~sd~iy~~~~~----~~l~~~l~~~L~p~ 169 (169)
+.+ ...++|+|+- |.+=-..++ +.+++.++++++|+
T Consensus 177 ~~l~~l~~~~~Da~fl-DgFsP~kNPeLWs~e~f~~l~~~~~pg 219 (308)
T 3vyw_A 177 KRIKEVENFKADAVFH-DAFSPYKNPELWTLDFLSLIKERIDEK 219 (308)
T ss_dssp HHGGGCCSCCEEEEEE-CCSCTTTSGGGGSHHHHHHHHTTEEEE
T ss_pred HHHhhhcccceeEEEe-CCCCcccCcccCCHHHHHHHHHHhCCC
Confidence 422 2237888885 654322332 57999999999885
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.16 E-value=0.76 Score=36.30 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=31.0
Q ss_pred hccCCCCCCeEEEECCCC-CHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+.....+|.+||=+|+|. |+..+.+++ .|++|++++.++ +-++.++
T Consensus 162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~ 209 (352)
T 1e3j_A 162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP--RRLEVAK 209 (352)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHH
Confidence 333455788999999862 555555555 588999999884 4555544
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.98 E-value=0.86 Score=35.91 Aligned_cols=55 Identities=20% Similarity=0.084 Sum_probs=34.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+...+.+........+|++||-.|++ .|...+.+++ .|++|++++.++. -++.++
T Consensus 154 ~~~ta~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~--~~~~~~ 211 (347)
T 2hcy_A 154 AGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEG--KEELFR 211 (347)
T ss_dssp HHHHHHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTT--HHHHHH
T ss_pred hHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHH--HHHHHH
Confidence 33334444444455678999999983 4555444444 6889999998753 444443
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=89.76 E-value=0.92 Score=36.12 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=57.2
Q ss_pred CCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC----------------------CcceEEEEEc
Q 030935 71 GANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK----------------------LNCRVMGLTW 128 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~----------------------~~~~~~~l~~ 128 (169)
.+.|+.||||..-...-+...+..+...|++- |++++.-++.+..++ -.......+.
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 46899999999988887776544444444443 567776666555431 1122222222
Q ss_pred CCC------CcCC-CCCCCcEEEEcCcCCCC--CChHHHHHHHHHhc
Q 030935 129 GFL------DASI-FDLNPNIILGADVFYDA--SGKICAFEILICSL 166 (169)
Q Consensus 129 ~~~------~~~~-~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L 166 (169)
.+. .... .+..+.++++--++++. +....+++.+.+..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~ 223 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF 223 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC
Confidence 221 0111 22467899988888765 55677888887755
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.56 Score=37.46 Aligned_cols=46 Identities=15% Similarity=0.320 Sum_probs=30.7
Q ss_pred hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.....+|.+||=+|+| .|+..+.+|+ .|+ +|+++|.++. -++.++
T Consensus 189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~--~~~~a~ 237 (376)
T 1e3i_A 189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE--KFPKAK 237 (376)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHH
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence 33455678899999976 3555555555 588 8999998853 444443
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.09 E-value=1.3 Score=35.05 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=29.7
Q ss_pred cCCCCCCeEEEECCC-CCHHHHHHHH-h-CCeEEEEcCCCcHHHHHHHH
Q 030935 66 RYRFSGANVVELGAG-TSLPGLVAAK-V-GSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 66 ~~~~~~~~vLElGcG-tGl~~l~~a~-~-ga~V~~~D~~~~~~~l~~~~ 111 (169)
....+|.+||=+|+| .|+..+.+|+ . |++|+++|.++ +-++.++
T Consensus 182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~--~~~~~~~ 228 (359)
T 1h2b_A 182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE--EKLKLAE 228 (359)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH--HHHHHHH
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH--HHHHHHH
Confidence 455678999999985 3334444444 5 88999999883 3444443
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.02 E-value=0.61 Score=37.20 Aligned_cols=46 Identities=13% Similarity=0.271 Sum_probs=30.9
Q ss_pred hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.....+|.+||=+|+| .|+..+.+|+ .|+ +|++++.++. -++.++
T Consensus 186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~--~~~~~~ 234 (374)
T 1cdo_A 186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD--KFEKAK 234 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHH
Confidence 33445678899999975 2555555555 588 8999998853 444443
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=88.91 E-value=1.1 Score=35.88 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=36.0
Q ss_pred chHHHHHHHHH-hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 53 PCSVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 53 ~~~~~La~~l~-~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.+...+.+.. +.....+|.+||=+|+| .|+..+.+|+ .|+ +|+++|.++. -++.++
T Consensus 175 ~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~--~~~~a~ 235 (378)
T 3uko_A 175 GCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSK--KYETAK 235 (378)
T ss_dssp GTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTT--HHHHHH
T ss_pred hhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence 33444444433 44455678899999986 3555555555 588 8999998863 444443
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=88.88 E-value=0.47 Score=34.12 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=28.1
Q ss_pred cCCCCCCeEEEECCC--CCHHHHHHH-HhCCeEEEEcCCCcHHHHHHH
Q 030935 66 RYRFSGANVVELGAG--TSLPGLVAA-KVGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 66 ~~~~~~~~vLElGcG--tGl~~l~~a-~~ga~V~~~D~~~~~~~l~~~ 110 (169)
....+|++||-.|++ .|...+.++ ..|++|++++.++ +.++.+
T Consensus 34 ~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~--~~~~~~ 79 (198)
T 1pqw_A 34 GRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD--AKREML 79 (198)
T ss_dssp SCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH--HHHHHH
T ss_pred hCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH--HHHHHH
Confidence 345678899999953 343333333 3689999999883 455444
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=88.88 E-value=1.4 Score=34.66 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=33.1
Q ss_pred HHHHHhccCCCCCCeEEEECCCCC--HHHHHHHH-h-CCeEEEEcCCCcHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTS--LPGLVAAK-V-GSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtG--l~~l~~a~-~-ga~V~~~D~~~~~~~l~~~~ 111 (169)
+..........++++||-.|+|+| ...+.+++ . |++|+++|.++ +-++.++
T Consensus 159 a~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~--~~~~~~~ 213 (347)
T 1jvb_A 159 TYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE--EAVEAAK 213 (347)
T ss_dssp HHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH--HHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH--HHHHHHH
Confidence 334444445567899999999743 44444443 6 89999999884 4555554
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=88.76 E-value=0.68 Score=36.86 Aligned_cols=46 Identities=15% Similarity=0.224 Sum_probs=30.7
Q ss_pred hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.....+|.+||=+|+| .|+..+.+|+ .|+ +|++++.++. -++.++
T Consensus 184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~--~~~~~~ 232 (373)
T 2fzw_A 184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD--KFARAK 232 (373)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHH
T ss_pred hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence 33445678899999975 2455555554 688 8999998853 445444
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=88.70 E-value=1 Score=35.38 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=32.8
Q ss_pred hccCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
+.....+|++||=.|+| .|...+.+++ .|++|++++.++. -++.+++
T Consensus 138 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~~ 187 (340)
T 3gms_A 138 ETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNK--HTEELLR 187 (340)
T ss_dssp TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHH
T ss_pred HhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHh
Confidence 44456678999999997 4555555555 6899999998853 4455443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.24 E-value=1.7 Score=34.04 Aligned_cols=52 Identities=25% Similarity=0.275 Sum_probs=35.1
Q ss_pred HHHHHHhc-cCCCCCCeEEEECC--CCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 58 LAEYVWQQ-RYRFSGANVVELGA--GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 58 La~~l~~~-~~~~~~~~vLElGc--GtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
.+.+.... ....++++||-.|+ |.|...+.+++ .|++|++++.++ +-++.++
T Consensus 153 ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~--~~~~~~~ 208 (343)
T 2eih_A 153 TAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE--DKLRRAK 208 (343)
T ss_dssp HHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH--HHHHHHH
T ss_pred HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 33344433 34557889999998 46666666555 688999999983 4555554
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=88.21 E-value=1.1 Score=35.53 Aligned_cols=48 Identities=29% Similarity=0.309 Sum_probs=32.6
Q ss_pred HhccCCCCCCeEEEECCCC-CHHHHHHHH-hCCe-EEEEcCCCcHHHHHHHHH
Q 030935 63 WQQRYRFSGANVVELGAGT-SLPGLVAAK-VGSN-VTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~-V~~~D~~~~~~~l~~~~~ 112 (169)
.......+|.+||=+|+|. |+..+.+|+ .|++ |+++|.++ +-++.+++
T Consensus 172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~a~~ 222 (363)
T 3m6i_A 172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDE--GRLKFAKE 222 (363)
T ss_dssp HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCH--HHHHHHHH
T ss_pred HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHHH
Confidence 3344456788999999852 555555555 5786 99999984 46666655
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=88.15 E-value=1.2 Score=34.94 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=34.1
Q ss_pred HHHHHHhcc--CCCCCCeEEEECCCC-CHHHHHHHH-h-CCeEEEEcCCCcHHHHHHHH
Q 030935 58 LAEYVWQQR--YRFSGANVVELGAGT-SLPGLVAAK-V-GSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 58 La~~l~~~~--~~~~~~~vLElGcGt-Gl~~l~~a~-~-ga~V~~~D~~~~~~~l~~~~ 111 (169)
.+.+..... ...+|.+||=+|+|. |+.++.+++ . +++|+++|.++ +-++.++
T Consensus 157 ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~--~~~~~~~ 213 (345)
T 3jv7_A 157 TPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDD--DRLALAR 213 (345)
T ss_dssp HHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCH--HHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHH
Confidence 344444442 456788999999863 666666665 4 56999999984 3555443
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=88.07 E-value=1.5 Score=33.92 Aligned_cols=40 Identities=18% Similarity=0.195 Sum_probs=26.9
Q ss_pred HHhccCCCCCCeEEEECCCCCH---HHHHHHHhCC-eEEEEcCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSL---PGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl---~~l~~a~~ga-~V~~~D~~~ 102 (169)
+.+.....+++++|=+|+| |. +...+++.|+ +|+.++.+.
T Consensus 118 l~~~~~~l~~k~vlVlGaG-G~g~aia~~L~~~G~~~v~i~~R~~ 161 (283)
T 3jyo_A 118 MEEGLPNAKLDSVVQVGAG-GVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_dssp HHHHCTTCCCSEEEEECCS-HHHHHHHHHHHHTTCSEEEEECSSH
T ss_pred HHHhCcCcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEECCH
Confidence 3333345688999999997 32 2234455687 799999884
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=87.99 E-value=0.78 Score=36.56 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.5
Q ss_pred hccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.....+|.+||=+|+|. |+..+.+|+ .|+ +|++++.++. -++.++
T Consensus 185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~--~~~~~~ 233 (374)
T 2jhf_A 185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD--KFAKAK 233 (374)
T ss_dssp TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHH
T ss_pred hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHH--HHHHHH
Confidence 334456788999999752 555555555 588 8999998853 444443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=87.94 E-value=1.5 Score=34.19 Aligned_cols=52 Identities=19% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHHH-hccCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHH
Q 030935 57 ILAEYVW-QQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 57 ~La~~l~-~~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~ 110 (169)
..+.+.. +.....+|++||-.||+ .|...+.+++ .|++|++++.++ +-++.+
T Consensus 131 ~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~--~~~~~~ 186 (333)
T 1v3u_A 131 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD--EKIAYL 186 (333)
T ss_dssp HHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH--HHHHHH
T ss_pred HHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH
Confidence 3444444 33455678999999983 4444444443 688999999873 455544
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.67 E-value=3 Score=31.72 Aligned_cols=81 Identities=9% Similarity=0.019 Sum_probs=48.3
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~----- 137 (169)
.++++++|=-|++.|+- ...+++.|++|++++... ++.++.+...+...+..+.+...+..+... ....
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGD-AEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE 104 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCC-HHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 45788899999776642 234455789999999744 355665555565555555544444443221 0001
Q ss_pred -CCCcEEEEcCcC
Q 030935 138 -LNPNIILGADVF 149 (169)
Q Consensus 138 -~~fDlIi~sd~i 149 (169)
.+.|++|.+--+
T Consensus 105 ~g~iD~lvnnAg~ 117 (280)
T 4da9_A 105 FGRIDCLVNNAGI 117 (280)
T ss_dssp HSCCCEEEEECC-
T ss_pred cCCCCEEEECCCc
Confidence 278999966544
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=87.61 E-value=1.6 Score=34.55 Aligned_cols=45 Identities=27% Similarity=0.210 Sum_probs=29.2
Q ss_pred HHHHHhccCCC-CCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCc
Q 030935 59 AEYVWQQRYRF-SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR 103 (169)
Q Consensus 59 a~~l~~~~~~~-~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~ 103 (169)
+.......... +|.+||=+|+| .|+..+.+++ .|++|++++.++.
T Consensus 168 a~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~ 215 (357)
T 2cf5_A 168 VYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNK 215 (357)
T ss_dssp HHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTT
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChH
Confidence 33333334455 78899999975 3444444444 5889999999853
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=87.58 E-value=1.1 Score=34.99 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=37.1
Q ss_pred cchHHHHHHHHH-hccCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHH
Q 030935 52 WPCSVILAEYVW-QQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 52 W~~~~~La~~l~-~~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~ 110 (169)
.+.+...|.+.+ +.....+|++||=.|++ .|...+.+++ .|++|++++.++ +-++.+
T Consensus 130 l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~ 190 (336)
T 4b7c_A 130 LGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA--EKCRFL 190 (336)
T ss_dssp TSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHH
Confidence 344445555555 44556688999999983 4555555554 688999999883 344443
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=87.47 E-value=0.71 Score=36.06 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=30.2
Q ss_pred cCCCCCCeEEEECC-C-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 66 RYRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 66 ~~~~~~~~vLElGc-G-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
....+|++||=.|+ | .|...+.+++ .|++|++++.++ +-++.++
T Consensus 136 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~ 182 (325)
T 3jyn_A 136 YQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP--EKAAHAK 182 (325)
T ss_dssp SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHH
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 34557889999983 3 5555555554 689999999883 4555554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.41 E-value=1.8 Score=34.65 Aligned_cols=51 Identities=35% Similarity=0.441 Sum_probs=32.9
Q ss_pred HHHHHhccC-CCCCCeEEEECCC-CCHHHHHHHH-hC-CeEEEEcCCCcHHHHHHHH
Q 030935 59 AEYVWQQRY-RFSGANVVELGAG-TSLPGLVAAK-VG-SNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 59 a~~l~~~~~-~~~~~~vLElGcG-tGl~~l~~a~-~g-a~V~~~D~~~~~~~l~~~~ 111 (169)
+.+.+.... ..+|.+||=+|+| .|+..+.+|+ .| ++|++++.++ +-++.++
T Consensus 183 a~~al~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~~~ 237 (380)
T 1vj0_A 183 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP--NRLKLAE 237 (380)
T ss_dssp HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH--HHHHHHH
T ss_pred HHHHHHhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCH--HHHHHHH
Confidence 333344445 5678899999965 3555555555 58 4999999883 3555544
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=87.05 E-value=1.1 Score=35.20 Aligned_cols=58 Identities=22% Similarity=0.148 Sum_probs=35.2
Q ss_pred chHHHHHHHHHh-ccCCC------CCCeEEEEC-CC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 53 PCSVILAEYVWQ-QRYRF------SGANVVELG-AG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 53 ~~~~~La~~l~~-~~~~~------~~~~vLElG-cG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
|.+...+.+.+. ..... +|.+||=.| +| .|+..+.+++ .|++|++++.++ +-++.+++
T Consensus 126 ~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~--~~~~~~~~ 193 (346)
T 3fbg_A 126 PLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN--ETIEWTKK 193 (346)
T ss_dssp HHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH--HHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHh
Confidence 555555555443 33333 688999885 43 4555555554 588999999973 45555543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=1.9 Score=33.94 Aligned_cols=50 Identities=28% Similarity=0.264 Sum_probs=32.5
Q ss_pred HHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+.+....... +|.+||-+|+| .|...+.+++ .|+ +|++++.++ +-++.++
T Consensus 157 a~~~l~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~--~~~~~~~ 209 (348)
T 2d8a_A 157 AVDTVLAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSD--FRRELAK 209 (348)
T ss_dssp HHHHHTTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH--HHHHHHH
T ss_pred HHHHHHhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHH
Confidence 3334444455 89999999995 2444444444 588 899999983 4555544
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.86 E-value=4.2 Score=30.49 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=50.7
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++++++|=-|++.|+- ...+++.|++|++++.+ ++-++.+.+.+...+..+.+...+..+... ...
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 85 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAART--VERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKA 85 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45789999999887753 33456679999999998 456666666666555555444444443211 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.+.|++|.+--+
T Consensus 86 ~g~id~lv~nAg~ 98 (264)
T 3ucx_A 86 YGRVDVVINNAFR 98 (264)
T ss_dssp TSCCSEEEECCCS
T ss_pred cCCCcEEEECCCC
Confidence 1378999976533
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=86.68 E-value=0.83 Score=36.38 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=37.0
Q ss_pred chHHHHHHHHH-hccCCC-----CCCeEEEEC-CC-CCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHH
Q 030935 53 PCSVILAEYVW-QQRYRF-----SGANVVELG-AG-TSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 53 ~~~~~La~~l~-~~~~~~-----~~~~vLElG-cG-tGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~ 111 (169)
|.+...+.+.+ ...... +|.+||=.| +| .|+..+.+|+. |++|++++.++ +-++.++
T Consensus 148 ~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~--~~~~~~~ 214 (363)
T 4dvj_A 148 PLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP--ETQEWVK 214 (363)
T ss_dssp HHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH--HHHHHHH
T ss_pred hhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH--HHHHHHH
Confidence 44555555554 333333 577899998 55 57777777874 67999999983 3455543
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=85.79 E-value=1.4 Score=34.64 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHH-hccCCCCCCeEEEECC--CCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 56 VILAEYVW-QQRYRFSGANVVELGA--GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 56 ~~La~~l~-~~~~~~~~~~vLElGc--GtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
...+.+.+ +.....+|++||=.|+ |.|...+.+++ .|++|++++.++. -++.++
T Consensus 144 ~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~--~~~~~~ 201 (342)
T 4eye_A 144 YHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTA--ATEFVK 201 (342)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGG--GHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHH
Confidence 33444444 3445567899999997 35566665555 6889999999753 444444
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=85.74 E-value=1.8 Score=33.81 Aligned_cols=55 Identities=18% Similarity=0.036 Sum_probs=34.8
Q ss_pred HHHHHHHHH-hccCCCCCCeEEEECC--CCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 55 SVILAEYVW-QQRYRFSGANVVELGA--GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 55 ~~~La~~l~-~~~~~~~~~~vLElGc--GtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+...+.+.+ +.....+|++||-.|+ |.|...+.+++ .|++|++++.++ +-++.++
T Consensus 139 ~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~--~~~~~~~ 197 (345)
T 2j3h_A 139 PGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK--EKVDLLK 197 (345)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHH
T ss_pred cHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 334444444 3345567899999997 35555554444 688999999883 3454443
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=85.74 E-value=3.5 Score=31.07 Aligned_cols=83 Identities=11% Similarity=0.167 Sum_probs=49.2
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~----- 137 (169)
.++++++|=-|++.|+- ...+++.|++|++++... .+.++.+.+.++..+..+.+...+..+... ....
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 93 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS-TKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAH 93 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46788999999776642 234455789999988765 345565555566555555444444333211 0000
Q ss_pred -CCCcEEEEcCcCCC
Q 030935 138 -LNPNIILGADVFYD 151 (169)
Q Consensus 138 -~~fDlIi~sd~iy~ 151 (169)
.+.|++|.+--+..
T Consensus 94 ~g~id~lvnnAg~~~ 108 (270)
T 3is3_A 94 FGHLDIAVSNSGVVS 108 (270)
T ss_dssp HSCCCEEECCCCCCC
T ss_pred cCCCCEEEECCCCCC
Confidence 27899996655443
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=85.61 E-value=1.1 Score=36.69 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=34.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC---e----EEEEcCCCcHHHHHHHHHHHH
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS---N----VTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga---~----V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+.-+|+||.||.|..++.+.+.|. - |.++|++ +.+++.-+.|..
T Consensus 9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid--~~A~~ty~~n~~ 59 (403)
T 4dkj_A 9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWF--VDAIVSYVAIHS 59 (403)
T ss_dssp EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCB--HHHHHHHHHHHC
T ss_pred ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecC--HHHHHHHHHHcC
Confidence 334899999999999999988772 3 7889999 457777777664
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.41 E-value=4.1 Score=31.30 Aligned_cols=81 Identities=14% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.+++++||=.|++.|+- ...+++.|++|++++.+ ++-++.+.+.+...+..+.+...+..+... ...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 105 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVD--QPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRL 105 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 45788999999876642 23345568999999998 446666666666555555544444333211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.++|++|.+--+.
T Consensus 106 ~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 106 LGGVDVVFSNAGIV 119 (301)
T ss_dssp HSSCSEEEECCCCC
T ss_pred CCCCCEEEECCCcC
Confidence 02789999765544
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=85.34 E-value=2.4 Score=33.67 Aligned_cols=50 Identities=24% Similarity=0.170 Sum_probs=30.3
Q ss_pred chHHHHHHHHHhccCCC-CCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRF-SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~-~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
+.+...+.......... +|.+||=+|+| .|+..+.+++ .|++|++++.++
T Consensus 169 ~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~ 221 (366)
T 1yqd_A 169 LCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSP 221 (366)
T ss_dssp GTHHHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred hhhHHHHHHHHHhcCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 33333344444434445 78899999974 2333344444 588999999885
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=85.00 E-value=1.1 Score=39.46 Aligned_cols=39 Identities=8% Similarity=-0.105 Sum_probs=32.0
Q ss_pred eEEEECCCCCHHHHHHHHhC------C-eEEEEcCCCcHHHHHHHHHH
Q 030935 73 NVVELGAGTSLPGLVAAKVG------S-NVTLTDDSNRIEVLKNMRRV 113 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~g------a-~V~~~D~~~~~~~l~~~~~n 113 (169)
+||||-||.|.+++-+.+.| . -+.++|++ +.+++.-+.|
T Consensus 214 tvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d--~~A~~Ty~~N 259 (784)
T 4ft4_B 214 TLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFN--SFACQSLKYN 259 (784)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESC--HHHHHHHHHH
T ss_pred eEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCC--HHHHHHHHHH
Confidence 69999999999999888766 3 47899999 4577776666
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=84.95 E-value=3.6 Score=30.78 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCCCeEEEECCCCCHHHHHH----HHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC-----
Q 030935 68 RFSGANVVELGAGTSLPGLVA----AKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~----a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~----- 136 (169)
.+++++||=.|++.| +|..+ ++.|++|++++.+ ++-++.+...+...+..+.+...+..+... ...
T Consensus 26 ~l~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 102 (262)
T 3rkr_A 26 SLSGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARD--VEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLA 102 (262)
T ss_dssp TTTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHH
Confidence 457889998887654 45444 4468999999998 446666666666555554444443332211 000
Q ss_pred -CCCCcEEEEcCcC
Q 030935 137 -DLNPNIILGADVF 149 (169)
Q Consensus 137 -~~~fDlIi~sd~i 149 (169)
-.+.|++|.+--+
T Consensus 103 ~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 103 AHGRCDVLVNNAGV 116 (262)
T ss_dssp HHSCCSEEEECCCC
T ss_pred hcCCCCEEEECCCc
Confidence 1268999976554
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=84.67 E-value=1.9 Score=39.46 Aligned_cols=40 Identities=8% Similarity=-0.018 Sum_probs=32.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCC-e-EEEEcCCCcHHHHHHHHHH
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS-N-VTLTDDSNRIEVLKNMRRV 113 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga-~-V~~~D~~~~~~~l~~~~~n 113 (169)
.+++||.||.|.+++.+.+.|. + |.++|+++ .+.+.-+.|
T Consensus 541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~--~A~~ty~~N 582 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWD--PAAQAFRLN 582 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSH--HHHHHHHHH
T ss_pred CeEEEeccCccHHHHHHHHCCCCceEEEEECCH--HHHHHHHHh
Confidence 3799999999999999999997 4 78999994 466655555
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=84.65 E-value=2.5 Score=31.62 Aligned_cols=81 Identities=16% Similarity=0.002 Sum_probs=48.8
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----C
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD-----L 138 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~-----~ 138 (169)
++++++|=-|++.|+- ...+++.|++|++++.+. +-++.+...++..+..+.+...+..+... .... .
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g 82 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNG--EKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHA 82 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSG--GGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence 4678899999876642 234455689999999985 35666666666555554444444333211 0000 3
Q ss_pred CCcEEEEcCcCCC
Q 030935 139 NPNIILGADVFYD 151 (169)
Q Consensus 139 ~fDlIi~sd~iy~ 151 (169)
++|++|.+--+..
T Consensus 83 ~id~lv~nAg~~~ 95 (252)
T 3h7a_A 83 PLEVTIFNVGANV 95 (252)
T ss_dssp CEEEEEECCCCCC
T ss_pred CceEEEECCCcCC
Confidence 7899987665543
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.55 E-value=0.85 Score=35.53 Aligned_cols=48 Identities=25% Similarity=0.185 Sum_probs=32.2
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEEC-CC-CCHHHHHHHH-hCCeEEEEcC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELG-AG-TSLPGLVAAK-VGSNVTLTDD 100 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElG-cG-tGl~~l~~a~-~ga~V~~~D~ 100 (169)
|.+...+.+..+.....+|.+||=.| +| .|+..+.+++ .|++|++++.
T Consensus 135 ~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~ 185 (321)
T 3tqh_A 135 PTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS 185 (321)
T ss_dssp HHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred hhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec
Confidence 44444455555555566889999887 44 5666666665 5889999974
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=2 Score=37.25 Aligned_cols=97 Identities=15% Similarity=0.078 Sum_probs=53.4
Q ss_pred CeEEEECCCCCHHHHHHHHh------------C--CeEEEEcCCCc-HHHHHHHH-----------HHHHHhCC---cc-
Q 030935 72 ANVVELGAGTSLPGLVAAKV------------G--SNVTLTDDSNR-IEVLKNMR-----------RVCEMNKL---NC- 121 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~------------g--a~V~~~D~~~~-~~~l~~~~-----------~n~~~n~~---~~- 121 (169)
.+|+|+|.|+|+..+.+.+. . -+++.++..+. .+-+..+- .-++.... .+
T Consensus 60 ~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 139 (689)
T 3pvc_A 60 CIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCH 139 (689)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEE
T ss_pred eEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCce
Confidence 48999999999988877553 1 26888888542 22222211 11111100 01
Q ss_pred --------eEEEEEcCCCCcCCC------CCCCcEEEEcCcC---CCCCC-hHHHHHHHHHhccCC
Q 030935 122 --------RVMGLTWGFLDASIF------DLNPNIILGADVF---YDASG-KICAFEILICSLFPI 169 (169)
Q Consensus 122 --------~~~~l~~~~~~~~~~------~~~fDlIi~sd~i---y~~~~-~~~l~~~l~~~L~p~ 169 (169)
....+.+|+..+.+. ..++|.++. |-+ ++++. -+.+++.+.+.++|+
T Consensus 140 r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~fl-D~f~p~~np~~w~~~~~~~l~~~~~~g 204 (689)
T 3pvc_A 140 RILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFL-DGFAPAKNPDMWNEQLFNAMARMTRPG 204 (689)
T ss_dssp EEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEE-CSSCC--CCTTCSHHHHHHHHHHEEEE
T ss_pred EEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEE-CCCCCCCChhhhhHHHHHHHHHHhCCC
Confidence 123355666533221 247898886 443 12222 377889998888764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.32 E-value=2.8 Score=33.02 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHHHH-hccCCCCCCeEEEECC-C-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 57 ILAEYVW-QQRYRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 57 ~La~~l~-~~~~~~~~~~vLElGc-G-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
..+.+.. +.....+|++||=.|+ | .|...+.+++ .|++|++++.++ +-++.+++
T Consensus 153 ~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~~ 210 (353)
T 4dup_A 153 FTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST--GKCEACER 210 (353)
T ss_dssp HHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHh
Confidence 3344444 3345567889998853 2 4555555554 588999999884 45555543
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.30 E-value=1.9 Score=34.49 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHH
Q 030935 69 FSGANVVELGAGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~ 111 (169)
.+|.+||=+|+|+|.+|+++.+ .|++|++++.++ +-++.++
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~--~~~~~~~ 213 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQ--EQADLLK 213 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSH--HHHHHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHH
Confidence 4688999998888877765543 588999999873 4555544
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.23 E-value=3.7 Score=31.05 Aligned_cols=81 Identities=6% Similarity=-0.052 Sum_probs=48.2
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
+.++++|=-|++.|+- ...+++.|++|++++.+ ++-++.+.+.+...+..+.+...+..+... ... -
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 79 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARR--QARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTW 79 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS--HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3577888888776642 23445568999999998 446666666666555554444444333211 000 1
Q ss_pred CCCcEEEEcCcCCC
Q 030935 138 LNPNIILGADVFYD 151 (169)
Q Consensus 138 ~~fDlIi~sd~iy~ 151 (169)
.+.|++|.+--+..
T Consensus 80 g~iD~lVnnAG~~~ 93 (264)
T 3tfo_A 80 GRIDVLVNNAGVMP 93 (264)
T ss_dssp SCCCEEEECCCCCC
T ss_pred CCCCEEEECCCCCC
Confidence 27899997665543
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=84.20 E-value=2.8 Score=32.63 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=29.4
Q ss_pred CCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
...+|++||=.|++ .|...+.+++ .|++|++++.++ +-++.++
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~~ 190 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD--EKLKIAK 190 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHH
Confidence 45678899999952 4555555554 588999999973 3444443
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=83.98 E-value=3.8 Score=32.95 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=29.5
Q ss_pred CCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 67 YRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
...+|.+||=+|+| .|+..+.+|+ .|+ +|+++|.++ +-++.++
T Consensus 210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~--~~~~~~~ 255 (404)
T 3ip1_A 210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSE--VRRNLAK 255 (404)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCH--HHHHHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH--HHHHHHH
Confidence 45678899999985 2444455554 588 899999884 4555554
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=83.86 E-value=4.1 Score=29.97 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=48.2
Q ss_pred CCCCeEEEECCCCCHHHH----HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--C----C--C
Q 030935 69 FSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S----I--F 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l----~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~----~--~ 136 (169)
++++++|=.|++.| +|. .+++.|++|++++.++ +-++.+...++..+..+.+...+..+... . . .
T Consensus 3 l~~k~vlITGas~g-IG~~~a~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (247)
T 3lyl_A 3 LNEKVALVTGASRG-IGFEVAHALASKGATVVGTATSQ--ASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAE 79 (247)
T ss_dssp TTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 36788888886655 444 3445689999999984 46666666666555555444444333211 0 0 1
Q ss_pred CCCCcEEEEcCcCCC
Q 030935 137 DLNPNIILGADVFYD 151 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~ 151 (169)
..++|++|.+--+..
T Consensus 80 ~~~id~li~~Ag~~~ 94 (247)
T 3lyl_A 80 NLAIDILVNNAGITR 94 (247)
T ss_dssp TCCCSEEEECCCCCC
T ss_pred cCCCCEEEECCCCCC
Confidence 136899997765543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.67 E-value=4.9 Score=29.65 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~----- 137 (169)
++++++|=.|++.| +|.. +++.|++|++++.+ ++-++.+.+.+...+..+.+...+..+... ....
T Consensus 7 ~~~k~vlITGas~g-iG~~~a~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 7 FENKVGIVTGSGGG-IGQAYAEALAREGAAVVVADIN--AEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 46889999997655 4443 34568999999998 446666666666555544444343333211 0000
Q ss_pred -CCCcEEEEcCcC
Q 030935 138 -LNPNIILGADVF 149 (169)
Q Consensus 138 -~~fDlIi~sd~i 149 (169)
.++|++|.+--+
T Consensus 84 ~g~id~li~~Ag~ 96 (253)
T 3qiv_A 84 FGGIDYLVNNAAI 96 (253)
T ss_dssp HSCCCEEEECCCC
T ss_pred cCCCCEEEECCCc
Confidence 278999976654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=83.49 E-value=5.3 Score=29.77 Aligned_cols=81 Identities=12% Similarity=0.030 Sum_probs=49.0
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~----- 137 (169)
.++++++|=-|++.|+- ...+++.|++|++++.+. +-++.+.+.+...+..+.+...+..+... ....
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 86 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKS--EGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ 86 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45788999888776643 234455799999999984 46666666566555554444343333211 0000
Q ss_pred -CCCcEEEEcCcCC
Q 030935 138 -LNPNIILGADVFY 150 (169)
Q Consensus 138 -~~fDlIi~sd~iy 150 (169)
.+.|+++.+--+.
T Consensus 87 ~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 87 FGKITVLVNNAGGG 100 (256)
T ss_dssp HSCCCEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 2789999765544
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=83.44 E-value=4.3 Score=32.10 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 71 GANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 71 ~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
|++||=+|+| .|...+.+++ .|++|++++.++
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 8999999983 2333333333 688999999985
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=83.40 E-value=3.5 Score=32.34 Aligned_cols=56 Identities=23% Similarity=0.155 Sum_probs=34.7
Q ss_pred chHHHHHHHHH-hccCCCCCCeEEEECC-C-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 53 PCSVILAEYVW-QQRYRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 53 ~~~~~La~~l~-~~~~~~~~~~vLElGc-G-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
|.+...+.+.+ +.....+|.+||=+|+ | .|+..+.+++ .|++|+++ .+ ++-++.++
T Consensus 132 ~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~--~~~~~~~~ 191 (343)
T 3gaz_A 132 PLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-AR--GSDLEYVR 191 (343)
T ss_dssp HHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-EC--HHHHHHHH
T ss_pred hhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eC--HHHHHHHH
Confidence 44444444444 4445567899999994 3 5666665555 58899999 66 33444443
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=83.32 E-value=4 Score=30.88 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=48.3
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC------
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD------ 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~------ 137 (169)
++++++|=-|++.|+- ...+++.|++|++++.++ +-++.+...+...+........+..+... ....
T Consensus 26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 103 (270)
T 3ftp_A 26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTE--AGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEF 103 (270)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 5678888888665532 234455689999999984 46666666666666555544444333211 0000
Q ss_pred CCCcEEEEcCcCC
Q 030935 138 LNPNIILGADVFY 150 (169)
Q Consensus 138 ~~fDlIi~sd~iy 150 (169)
.+.|++|.+--+.
T Consensus 104 g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 104 GALNVLVNNAGIT 116 (270)
T ss_dssp SCCCEEEECCCCC
T ss_pred CCCCEEEECCCCC
Confidence 2789999765544
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=83.05 E-value=11 Score=28.48 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=27.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSN 102 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~ 102 (169)
+..-+.+....+++++++=+|+| | .|.. +++.|++|++++.+.
T Consensus 106 ~~~~L~~~~~~l~~k~vlViGaG-g-~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 106 LLSDLERLSFIRPGLRILLIGAG-G-ASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCS-H-HHHHHHHHHHHTTCEEEEECSSH
T ss_pred HHHHHHhcCcCcCCCEEEEECCc-H-HHHHHHHHHHHcCCEEEEEECCH
Confidence 33334333234578999999996 3 4443 344688999999883
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=82.69 E-value=3.5 Score=32.49 Aligned_cols=51 Identities=22% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHHHHh-ccCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHH
Q 030935 58 LAEYVWQ-QRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 58 La~~l~~-~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~ 110 (169)
.+.+... .....++++||-.|++ .|...+.+++ .|++|++++.++ +-++.+
T Consensus 157 ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~ 211 (351)
T 1yb5_A 157 TAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE--EGQKIV 211 (351)
T ss_dssp HHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHH
T ss_pred HHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh--hHHHHH
Confidence 3333443 3445578899999973 4444444444 688999999884 344443
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=82.28 E-value=3.8 Score=31.98 Aligned_cols=39 Identities=28% Similarity=0.199 Sum_probs=26.7
Q ss_pred hccCCCCCCeEEEECCCCC-HHHHHHHH-h-CCeEEEEcCCC
Q 030935 64 QQRYRFSGANVVELGAGTS-LPGLVAAK-V-GSNVTLTDDSN 102 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcGtG-l~~l~~a~-~-ga~V~~~D~~~ 102 (169)
+.....+|.+||=+|+|.+ ...+.+++ . |++|+++|.++
T Consensus 157 ~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~ 198 (348)
T 4eez_A 157 KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQ 198 (348)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCH
T ss_pred cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcH
Confidence 3334567889999999843 44444444 4 56999999984
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=82.25 E-value=7.4 Score=30.14 Aligned_cols=81 Identities=11% Similarity=0.026 Sum_probs=48.7
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC--cceEEEEEcCCCCc--CCC----
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA--SIF---- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~--~~~~~~l~~~~~~~--~~~---- 136 (169)
.+.+++||=-|++.|+-. ..+++.|++|++++.+ ++-++.+...+...+. .+.+...+..+... ...
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIR--QDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 357889999998877532 3445568999999998 4466666666655554 33333333332111 000
Q ss_pred --CCCCcEEEEcCcCC
Q 030935 137 --DLNPNIILGADVFY 150 (169)
Q Consensus 137 --~~~fDlIi~sd~iy 150 (169)
-.++|++|.+--+.
T Consensus 83 ~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHTCCEEEEEECCCCC
T ss_pred HhCCCCCEEEECCCcC
Confidence 13679999766554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=82.10 E-value=6.7 Score=29.19 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=48.5
Q ss_pred CCCCCeEEEECC-CCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC-CcceEEEEEcCCCCc--CCC----
Q 030935 68 RFSGANVVELGA-GTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK-LNCRVMGLTWGFLDA--SIF---- 136 (169)
Q Consensus 68 ~~~~~~vLElGc-GtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~-~~~~~~~l~~~~~~~--~~~---- 136 (169)
.++++++|=.|+ |.|+- ...+++.|++|++++.+. +-++.+.+.++..+ ..+.+...+..+... ...
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHE--RRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 357889999998 67753 345566799999999984 45555555554332 334444333333211 000
Q ss_pred --CCCCcEEEEcCcCCC
Q 030935 137 --DLNPNIILGADVFYD 151 (169)
Q Consensus 137 --~~~fDlIi~sd~iy~ 151 (169)
-.++|++|.+--+..
T Consensus 97 ~~~g~id~li~~Ag~~~ 113 (266)
T 3o38_A 97 EKAGRLDVLVNNAGLGG 113 (266)
T ss_dssp HHHSCCCEEEECCCCCC
T ss_pred HHhCCCcEEEECCCcCC
Confidence 027899997765543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.93 E-value=7.4 Score=29.16 Aligned_cols=82 Identities=18% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCCCCCeEEEECCCCCHHHHHHH----HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC----
Q 030935 67 YRFSGANVVELGAGTSLPGLVAA----KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF---- 136 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a----~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~---- 136 (169)
..+++++||=.|++ |.+|..++ +.|++|++++.++ +-++.+.+.++..+..+.+...+..+... ...
T Consensus 27 ~~l~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 103 (272)
T 1yb1_A 27 KSVTGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINK--HGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVK 103 (272)
T ss_dssp CCCTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCH--HHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHH
Confidence 34678899988865 45555444 4688999999983 45555555555444444444344333211 000
Q ss_pred --CCCCcEEEEcCcCCC
Q 030935 137 --DLNPNIILGADVFYD 151 (169)
Q Consensus 137 --~~~fDlIi~sd~iy~ 151 (169)
-.++|+||.+--+..
T Consensus 104 ~~~g~iD~li~~Ag~~~ 120 (272)
T 1yb1_A 104 AEIGDVSILVNNAGVVY 120 (272)
T ss_dssp HHTCCCSEEEECCCCCC
T ss_pred HHCCCCcEEEECCCcCC
Confidence 126899997665443
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=81.89 E-value=3.5 Score=31.97 Aligned_cols=45 Identities=13% Similarity=0.008 Sum_probs=29.7
Q ss_pred cCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 66 RYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 66 ~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
....++++||-.|++ .|...+.+++ .|++|++++.++ +-++.+++
T Consensus 136 ~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~--~~~~~~~~ 183 (327)
T 1qor_A 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA--QKAQSALK 183 (327)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHHH
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHH
Confidence 345578899999943 4444444443 689999999983 45555543
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=81.76 E-value=4.8 Score=30.47 Aligned_cols=81 Identities=7% Similarity=-0.109 Sum_probs=46.1
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
.+++++|=-|++.|+- ...+++.|++|++++.+ ++-++.+.+.+...+..+.+...+..+... ... -
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARD--AKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4678899999766542 23445568999999998 345665555565555554444444333211 000 1
Q ss_pred CCCcEEEEcCcCCC
Q 030935 138 LNPNIILGADVFYD 151 (169)
Q Consensus 138 ~~fDlIi~sd~iy~ 151 (169)
.+.|++|.+--+..
T Consensus 100 g~id~lv~nAg~~~ 113 (279)
T 3sju_A 100 GPIGILVNSAGRNG 113 (279)
T ss_dssp CSCCEEEECCCCCC
T ss_pred CCCcEEEECCCCCC
Confidence 27899997665543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=81.62 E-value=5.9 Score=30.22 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=46.9
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++++++|=-|++.|+- ...+++.|++|++++.+. ....+.+++.++..+..+.+...+..+... ...
T Consensus 44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDE-EGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-hHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45788999999776642 234455689999999986 234555555455455544444333333211 000
Q ss_pred CCCCcEEEEcCcC
Q 030935 137 DLNPNIILGADVF 149 (169)
Q Consensus 137 ~~~fDlIi~sd~i 149 (169)
-.++|++|.+--+
T Consensus 123 ~g~iD~lvnnAg~ 135 (291)
T 3ijr_A 123 LGSLNILVNNVAQ 135 (291)
T ss_dssp HSSCCEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 0278999966433
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=81.58 E-value=1.8 Score=33.29 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.5
Q ss_pred CCCCCeEEEECC--CCCHHHHHHHH-hCCeEEEEcCCC
Q 030935 68 RFSGANVVELGA--GTSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGc--GtGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
..+|++||-.|+ |.|...+.+++ .|++|++++.++
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~ 160 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 160 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 557889999997 35555555555 688999999974
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=81.45 E-value=7.6 Score=30.54 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=27.2
Q ss_pred HHHhccCCCCCCeEEEECCCCCH---HHHHHHHhCC-eEEEEcCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSL---PGLVAAKVGS-NVTLTDDS 101 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl---~~l~~a~~ga-~V~~~D~~ 101 (169)
-+.+....++++++|=+|+| |. +...+++.|+ +|+.++.+
T Consensus 144 ~L~~~~~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 144 ALKEAGHDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRK 187 (315)
T ss_dssp HHHHTTCCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECS
T ss_pred HHHHcCCCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECC
Confidence 34443345689999999997 43 2334556788 89988887
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=81.11 E-value=3.8 Score=30.60 Aligned_cols=80 Identities=16% Similarity=0.090 Sum_probs=46.5
Q ss_pred CCCCCeEEEECCCCCHHHH----HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC-----
Q 030935 68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF----- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l----~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~----- 136 (169)
.++++++|=-|++.| +|. .+++.|++|++++.+ ++-++.+...+...+..+.+...+..+... ...
T Consensus 3 ~l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (257)
T 3imf_A 3 AMKEKVVIITGGSSG-MGKGMATRFAKEGARVVITGRT--KEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDE 79 (257)
T ss_dssp TTTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 357888888887655 444 345568999999998 446666555554444444433333333211 000
Q ss_pred -CCCCcEEEEcCcCC
Q 030935 137 -DLNPNIILGADVFY 150 (169)
Q Consensus 137 -~~~fDlIi~sd~iy 150 (169)
-.+.|++|.+--+.
T Consensus 80 ~~g~id~lv~nAg~~ 94 (257)
T 3imf_A 80 KFGRIDILINNAAGN 94 (257)
T ss_dssp HHSCCCEEEECCCCC
T ss_pred HcCCCCEEEECCCCC
Confidence 02789999765443
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.08 E-value=7.2 Score=29.41 Aligned_cols=83 Identities=13% Similarity=0.059 Sum_probs=48.4
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++++++|=-|++.|+- ...+++.|++|++++... .+..+.+...++..+..+.+...+..+... ...
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 106 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA-AERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEA 106 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999876642 234455789999997765 345555555555555544444333332211 000
Q ss_pred CCCCcEEEEcCcCCC
Q 030935 137 DLNPNIILGADVFYD 151 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~ 151 (169)
-.+.|++|.+--+..
T Consensus 107 ~g~iD~lvnnAg~~~ 121 (271)
T 3v2g_A 107 LGGLDILVNSAGIWH 121 (271)
T ss_dssp HSCCCEEEECCCCCC
T ss_pred cCCCcEEEECCCCCC
Confidence 027899997665543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=80.93 E-value=8.4 Score=28.45 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=45.5
Q ss_pred CCCCeEEEECCCCCHHHHH----HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC-----
Q 030935 69 FSGANVVELGAGTSLPGLV----AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD----- 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~----~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~----- 137 (169)
++++++|=.|++.| +|.. +++.|++|++++.+ ++-++.+.+.+...+..+.+...+..+... ....
T Consensus 5 l~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (247)
T 2jah_A 5 LQGKVALITGASSG-IGEATARALAAEGAAVAIAARR--VEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEA 81 (247)
T ss_dssp TTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 56788999997655 4443 34568999999988 345555555555444444433333332211 0000
Q ss_pred -CCCcEEEEcCcCC
Q 030935 138 -LNPNIILGADVFY 150 (169)
Q Consensus 138 -~~fDlIi~sd~iy 150 (169)
.++|++|.+--+.
T Consensus 82 ~g~id~lv~nAg~~ 95 (247)
T 2jah_A 82 LGGLDILVNNAGIM 95 (247)
T ss_dssp HSCCSEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 2789998765443
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.86 E-value=4.2 Score=31.67 Aligned_cols=47 Identities=30% Similarity=0.376 Sum_probs=29.9
Q ss_pred HhccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 63 WQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
.......+|.+||=.|+| .|..++.+++ .|+ .++++|.++ +-++.++
T Consensus 153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~--~k~~~a~ 202 (346)
T 4a2c_A 153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISS--EKLALAK 202 (346)
T ss_dssp HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHH
T ss_pred HHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechH--HHHHHHH
Confidence 334445678899999986 3444555555 576 578999884 3444444
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=80.80 E-value=13 Score=28.46 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCC-eEEEEcCCC
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga-~V~~~D~~~ 102 (169)
..+++++|=+|+| |. +...+++.|+ +|+..+.+.
T Consensus 117 ~l~~k~~lvlGaG-g~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 117 PLRNRRVLLLGAG-GAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp CCTTSEEEEECCS-HHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CccCCEEEEECcc-HHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 4578999999997 32 1224455785 899998873
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=80.75 E-value=4 Score=31.86 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=26.6
Q ss_pred CCCCCeEEEECCC-CCH-HHHHHHHhCC-eEEEEcCCC
Q 030935 68 RFSGANVVELGAG-TSL-PGLVAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl-~~l~~a~~ga-~V~~~D~~~ 102 (169)
.+++.+||=+||| .|. +...+++.|. +++.+|.+.
T Consensus 33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~ 70 (292)
T 3h8v_A 33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK 70 (292)
T ss_dssp GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 3467899999998 453 4557777886 899999874
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=80.37 E-value=4.9 Score=30.93 Aligned_cols=78 Identities=13% Similarity=0.039 Sum_probs=46.1
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++||.+|==|++.|+ ++..+++.|++|+++|.++ +.++.+.+. .+.++.....+..+... ...
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~--~~l~~~~~~---~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 100 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRK--DVLDAAIAE---IGGGAVGIQADSANLAELDRLYEKVKAE 100 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHH---HCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHH---cCCCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 4689999999988874 3445566799999999984 455544332 24443333333332211 000
Q ss_pred CCCCcEEEEcCcCC
Q 030935 137 DLNPNIILGADVFY 150 (169)
Q Consensus 137 ~~~fDlIi~sd~iy 150 (169)
-.+.|+++.+-=+.
T Consensus 101 ~G~iDiLVNNAG~~ 114 (273)
T 4fgs_A 101 AGRIDVLFVNAGGG 114 (273)
T ss_dssp HSCEEEEEECCCCC
T ss_pred cCCCCEEEECCCCC
Confidence 13789888665444
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=2.2 Score=33.49 Aligned_cols=37 Identities=24% Similarity=0.353 Sum_probs=26.8
Q ss_pred ccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCC
Q 030935 65 QRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSN 102 (169)
Q Consensus 65 ~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~ 102 (169)
.... +|.+||-+|+| .|+..+.+|+ .|+ +|++++.++
T Consensus 160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 160 GSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred hCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4455 88999999985 2444555554 588 899999883
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=80.03 E-value=2.6 Score=31.90 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=29.7
Q ss_pred cCCCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCC
Q 030935 66 RYRFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~ 102 (169)
.+.|+||++|=-|++.|+ ++..+++.|++|+++|.++
T Consensus 6 ~dlf~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~ 45 (242)
T 4b79_A 6 HDIYAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDA 45 (242)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 356799999999999885 3445667799999999985
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=80.02 E-value=4.3 Score=31.94 Aligned_cols=52 Identities=13% Similarity=0.046 Sum_probs=32.0
Q ss_pred HHHHHHH-hccCCCCCCeEEEECCC--CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHH
Q 030935 57 ILAEYVW-QQRYRFSGANVVELGAG--TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNM 110 (169)
Q Consensus 57 ~La~~l~-~~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~ 110 (169)
..|.+.. ......+|++||-.|++ .|...+.+++ .|++|++++.++ +-++.+
T Consensus 148 ~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~--~~~~~~ 203 (354)
T 2j8z_A 148 LTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ--KKLQMA 203 (354)
T ss_dssp HHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHH
Confidence 3333333 33445578899999853 4444444443 688999999884 455554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 169 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.77 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.77 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.76 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.75 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.73 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.73 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.68 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.64 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.63 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.62 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.61 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.6 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.6 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.59 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.58 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.57 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.56 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.55 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.54 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.54 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.54 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.52 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.51 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.51 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.5 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.5 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.5 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.48 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.47 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.46 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.44 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.41 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.41 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.4 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.4 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.4 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.4 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.39 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.38 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.37 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.36 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.35 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.33 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.32 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.32 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.3 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.3 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.3 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.29 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.27 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.26 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.26 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.24 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.22 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.22 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.21 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.17 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.16 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.15 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.15 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.11 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.06 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.05 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.89 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.85 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.78 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.68 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.68 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.57 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.56 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.43 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.38 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.32 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.31 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.3 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.24 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.16 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.13 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.11 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.09 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.08 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.07 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.01 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.01 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.72 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.71 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.69 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.58 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.54 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.52 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.47 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.36 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.29 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 96.99 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.65 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 96.64 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 96.52 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.49 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.34 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.33 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.31 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.15 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.63 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.62 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.54 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.47 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.02 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.97 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.96 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 94.64 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.62 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.48 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.3 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.07 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.97 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 93.9 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.87 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.8 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 93.78 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 93.47 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.46 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.19 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 93.05 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.85 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.74 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 92.67 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 92.62 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 92.5 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 92.13 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 92.08 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.81 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 91.77 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.62 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 91.55 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.53 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 91.25 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 91.16 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.08 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.97 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 90.91 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 90.9 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 90.84 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 90.61 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.52 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 90.4 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 90.28 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.06 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 89.77 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.33 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 89.2 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.18 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 88.66 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 88.59 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 88.43 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.34 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 88.08 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 87.37 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 87.01 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 86.71 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 86.58 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 86.47 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 85.94 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 84.9 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 84.8 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.53 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 84.22 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 84.19 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 83.79 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.73 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 83.49 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 83.35 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 82.94 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 82.62 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 82.56 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.08 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.83 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 81.59 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 81.53 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 81.53 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 81.31 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 81.13 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 81.0 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 80.56 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 80.28 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 80.18 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 80.17 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=2e-18 Score=130.74 Aligned_cols=107 Identities=14% Similarity=0.038 Sum_probs=89.5
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc-CC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA-SI 135 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~-~~ 135 (169)
..++|.+..+..+|.+|||||||+|.++..+++.+++|+++|+| +.|++.|++++..++.+ +.+ ..++... ++
T Consensus 4 ~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S--~~~l~~A~~~~~~~~~~~~~~---~~~d~~~~~~ 78 (234)
T d1xxla_ 4 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDAT--KEMVEVASSFAQEKGVENVRF---QQGTAESLPF 78 (234)
T ss_dssp HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHHTCCSEEE---EECBTTBCCS
T ss_pred HHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCC--hhhhhhhhhhhcccccccccc---cccccccccc
Confidence 34566666677789999999999999999999999999999999 56999999999988775 333 3333322 34
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||+|+|+.++++..+++.+++.+.+.|+|+
T Consensus 79 ~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg 112 (234)
T d1xxla_ 79 PDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD 112 (234)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred cccccceeeeeceeecccCHHHHHHHHHHeeCCC
Confidence 4569999999999999999999999999999995
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=5e-19 Score=136.60 Aligned_cols=125 Identities=18% Similarity=0.159 Sum_probs=96.3
Q ss_pred CceEEEEeccccCCcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH
Q 030935 33 PSFSIAIIENMKEEYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 33 ~~~~i~i~~~~~~~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
....|.|.+.+..+||. .|.+..+.+++.+.. .+|++|||+|||+|.+++.+++.|++|+++|+++ .+++.+++
T Consensus 87 ~~~~i~i~pg~aFGTG~--H~TT~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~--~av~~A~~ 160 (254)
T d2nxca1 87 AEIPLVIEPGMAFGTGH--HETTRLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDP--MVLPQAEA 160 (254)
T ss_dssp SSEEEECCCC-----CC--SHHHHHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCG--GGHHHHHH
T ss_pred cceEEEEccccccCccc--cchhhHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECCh--HHHHHHHH
Confidence 46778887777777777 468888888887654 4789999999999999999999999999999995 59999999
Q ss_pred HHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 113 VCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 113 n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|++.|+++.++.. ++........+||+|+++-+ ...+..+++.+.+.||||
T Consensus 161 na~~n~~~~~~~~---~d~~~~~~~~~fD~V~ani~---~~~l~~l~~~~~~~LkpG 211 (254)
T d2nxca1 161 NAKRNGVRPRFLE---GSLEAALPFGPFDLLVANLY---AELHAALAPRYREALVPG 211 (254)
T ss_dssp HHHHTTCCCEEEE---SCHHHHGGGCCEEEEEEECC---HHHHHHHHHHHHHHEEEE
T ss_pred HHHHcCCceeEEe---ccccccccccccchhhhccc---cccHHHHHHHHHHhcCCC
Confidence 9999999876543 33323334569999998622 234678899999999985
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.76 E-value=1.9e-18 Score=127.95 Aligned_cols=113 Identities=19% Similarity=0.102 Sum_probs=90.8
Q ss_pred ecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 51 VWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 51 ~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+.+++..|.+.+ ...++++|||+|||+|.+++.+++.+.+|+++|++ +.+++.+++|++.|++......+.+++
T Consensus 37 ~d~~t~lLi~~l----~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s--~~~i~~a~~n~~~~~l~~~~i~~~~~d 110 (194)
T d1dusa_ 37 VDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADEVKSTTMADIN--RRAIKLAKENIKLNNLDNYDIRVVHSD 110 (194)
T ss_dssp CCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHTTCTTSCEEEEECS
T ss_pred cCHHHHHHHHhC----CcCCCCeEEEEeecCChhHHHHHhhccccceeeec--cccchhHHHHHHHhCCccceEEEEEcc
Confidence 455666665544 45578899999999999999999998999999999 569999999999998865333466666
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCC-hHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASG-KICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~-~~~l~~~l~~~L~p~ 169 (169)
..+...+.+||+|+++.++|.... .+.+++.+.+.|+|+
T Consensus 111 ~~~~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg 150 (194)
T d1dusa_ 111 LYENVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN 150 (194)
T ss_dssp TTTTCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE
T ss_pred hhhhhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC
Confidence 655556679999999888876654 478999999999985
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=4.8e-18 Score=129.58 Aligned_cols=115 Identities=19% Similarity=0.058 Sum_probs=96.0
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
+|.+.-....+.......+|.+|||||||+|..+..+++. |++|+++|++ +.|++.+++++..+++..++. +..++
T Consensus 15 ~p~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s--~~~~~~ar~~~~~~gl~~~v~-~~~~d 91 (245)
T d1nkva_ 15 NPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMS--SLFTAQAKRRAEELGVSERVH-FIHND 91 (245)
T ss_dssp SSCCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEE-EEESC
T ss_pred CCCCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecc--cchhhHHHHHHHHhhccccch-hhhhH
Confidence 5666667777777777788999999999999999988875 7799999999 579999999999998864432 33345
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 131 LDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
......+.+||+|+|..++++..+.+.+++.+++.||||
T Consensus 92 ~~~~~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG 130 (245)
T d1nkva_ 92 AAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG 130 (245)
T ss_dssp CTTCCCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE
T ss_pred HhhccccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC
Confidence 444445679999999999999999999999999999995
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.73 E-value=1.3e-17 Score=125.43 Aligned_cols=100 Identities=13% Similarity=-0.051 Sum_probs=83.2
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
....++.+|||||||+|..+..+++.|++|+++|++ +.|++.|+++++.++.+ +.+...++.+. ++.+.+||+|+
T Consensus 11 ~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s--~~~i~~A~~~~~~~~~~~i~~~~~d~~~l--~~~~~~fD~v~ 86 (231)
T d1vl5a_ 11 AALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLT--EDILKVARAFIEGNGHQQVEYVQGDAEQM--PFTDERFHIVT 86 (231)
T ss_dssp HTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCC-CC--CSCTTCEEEEE
T ss_pred cCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECC--HHHHhhhhhcccccccccccccccccccc--ccccccccccc
Confidence 345577899999999999999999999999999999 56999999999887764 33333333322 34456999999
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
|..++++..+.+.+++.+.+.|+||
T Consensus 87 ~~~~l~~~~d~~~~l~~~~r~Lkpg 111 (231)
T d1vl5a_ 87 CRIAAHHFPNPASFVSEAYRVLKKG 111 (231)
T ss_dssp EESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred ccccccccCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999996
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.7e-17 Score=123.81 Aligned_cols=106 Identities=15% Similarity=0.076 Sum_probs=83.4
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+..++.+.. .++.+|||||||+|..++.+++.|++|+++|+| +.|++.+++++...+........+..+ .+..+
T Consensus 27 ~~~~~~~~l--~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S--~~~i~~ak~~~~~~~~~~~~~~~d~~~--l~~~~ 100 (226)
T d1ve3a1 27 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDIS--EDMIRKAREYAKSRESNVEFIVGDARK--LSFED 100 (226)
T ss_dssp HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCCEEEECCTTS--CCSCT
T ss_pred HHHHHHHhc--CCCCEEEEECCCcchhhhhHhhhhccccccccc--ccchhhhhhhhcccccccccccccccc--ccccC
Confidence 344554443 256799999999999999999999999999999 579999999988777655443333222 23445
Q ss_pred CCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.+||+|+|..++++.+ ++..+++.+.++|+||
T Consensus 101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg 134 (226)
T d1ve3a1 101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS 134 (226)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE
T ss_pred cCceEEEEecchhhCChhHHHHHHHHHHHHcCcC
Confidence 6999999999999875 6778999999999985
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.73 E-value=3.4e-17 Score=127.24 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=87.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SI 135 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~ 135 (169)
+++.+.......++.+|||||||+|.++..+++. +++|+++|++ +.+++.++++....++..++. +..++... +.
T Consensus 55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s--~~~i~~a~~~~~~~gl~~~v~-~~~~d~~~l~~ 131 (282)
T d2o57a1 55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIA--PVQNKRNEEYNNQAGLADNIT-VKYGSFLEIPC 131 (282)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHHTCTTTEE-EEECCTTSCSS
T ss_pred HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEecc--chhhhhhhccccccccccccc-ccccccccccc
Confidence 4444545556668899999999999999998875 7899999999 569999999999888764433 22233322 34
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||+|++..++++..+...+++.+.+.|+||
T Consensus 132 ~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg 165 (282)
T d2o57a1 132 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR 165 (282)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE
T ss_pred cccccchhhccchhhhccCHHHHHHHHHHhcCCC
Confidence 4569999999999999999999999999999996
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.68 E-value=1.1e-16 Score=121.62 Aligned_cols=97 Identities=21% Similarity=0.164 Sum_probs=78.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc-
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA- 146 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s- 146 (169)
..++++|||+|||||..++.+++.|++|+++|++ +.|++.|++++..++.++.+.. ++......+.+||+|+|.
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s--~~mi~~a~~~~~~~~~~i~~~~---~d~~~l~~~~~fD~I~~~~ 113 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLH--EEMLRVARRKAKERNLKIEFLQ---GDVLEIAFKNEFDAVTMFF 113 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCCEEEE---SCGGGCCCCSCEEEEEECS
T ss_pred CCCCCEEEEeCCCCCccchhhcccceEEEEEeec--cccccccccccccccccchhee---hhhhhcccccccchHhhhh
Confidence 4466799999999999999999999999999999 5799999999998888766544 333332344689999986
Q ss_pred CcCCCC--CChHHHHHHHHHhccCC
Q 030935 147 DVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.++++. .+...+++.+.+.|+|+
T Consensus 114 ~~~~~~~~~~~~~~L~~~~~~Lkpg 138 (251)
T d1wzna1 114 STIMYFDEEDLRKLFSKVAEALKPG 138 (251)
T ss_dssp SGGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred hhhhcCChHHHHHHHHHHHHHcCCC
Confidence 566654 45668999999999985
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=3.7e-16 Score=115.43 Aligned_cols=97 Identities=20% Similarity=0.164 Sum_probs=79.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++.+|||||||+|..++.++++|.+|+++|++ +.+++.++++.+..+++. ......+......+.+||+|+|..+
T Consensus 29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s--~~~l~~a~~~~~~~~~~~--~~~~~~d~~~~~~~~~fD~I~~~~~ 104 (198)
T d2i6ga1 29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKN--PASMANLERIKAAEGLDN--LQTDLVDLNTLTFDGEYDFILSTVV 104 (198)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCTT--EEEEECCTTTCCCCCCEEEEEEESC
T ss_pred CCCCcEEEECCCCCHHHHHHHHHhhhhccccCc--HHHHHHHHHHhhhccccc--hhhhheecccccccccccEEEEeee
Confidence 355699999999999999999999999999999 569999999998888763 2233445444345679999999999
Q ss_pred CCCC--CChHHHHHHHHHhccCC
Q 030935 149 FYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+++. .....+++.+.++|+|+
T Consensus 105 ~~~~~~~~~~~~l~~~~~~L~pg 127 (198)
T d2i6ga1 105 MMFLEAQTIPGLIANMQRCTKPG 127 (198)
T ss_dssp GGGSCTTHHHHHHHHHHHTEEEE
T ss_pred eecCCHHHHHHHHHHHHHHcCCC
Confidence 9976 44678999999999985
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=4.6e-16 Score=114.17 Aligned_cols=110 Identities=15% Similarity=-0.014 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
....+-..+.......+|.+|||+|||+|.+++.+|+.+++|+++|++ +++++.+++|++.+++..++. +..++...
T Consensus 17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~--~~~l~~a~~n~~~~gl~~~v~-~~~gda~~ 93 (186)
T d1l3ia_ 17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRN--PEAISTTEMNLQRHGLGDNVT-LMEGDAPE 93 (186)
T ss_dssp CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCTTEE-EEESCHHH
T ss_pred ChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCC--HHHHHHHHHHHHHcCCCcceE-EEECchhh
Confidence 333343344444456689999999999999999999988899999999 679999999999999864443 23344322
Q ss_pred C-CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 S-IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~-~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. .....||+|++.... ...+.+++.+.+.|+|+
T Consensus 94 ~~~~~~~~D~v~~~~~~---~~~~~~~~~~~~~Lkpg 127 (186)
T d1l3ia_ 94 ALCKIPDIDIAVVGGSG---GELQEILRIIKDKLKPG 127 (186)
T ss_dssp HHTTSCCEEEEEESCCT---TCHHHHHHHHHHTEEEE
T ss_pred cccccCCcCEEEEeCcc---ccchHHHHHHHHHhCcC
Confidence 2 233589999997755 34688999999999985
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.63 E-value=3.9e-16 Score=117.67 Aligned_cols=91 Identities=25% Similarity=0.204 Sum_probs=73.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE-cCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG-ADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~-sd~ 148 (169)
++.+|||+|||+|..+..+++.|++|+++|++ +.|++.++++. ... +...+..+ .+..+.+||+|+| .++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s--~~~l~~a~~~~----~~~-~~~~~~~~--l~~~~~~fD~ii~~~~~ 112 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPS--KEMLEVAREKG----VKN-VVEAKAED--LPFPSGAFEAVLALGDV 112 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESC--HHHHHHHHHHT----CSC-EEECCTTS--CCSCTTCEEEEEECSSH
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeecc--ccccccccccc----ccc-cccccccc--cccccccccceeeecch
Confidence 57799999999999999999999999999999 56999988753 222 22222222 2344579999998 578
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++..+.+.+++.+.+.|+||
T Consensus 113 ~~~~~d~~~~l~~i~r~Lk~g 133 (246)
T d2avna1 113 LSYVENKDKAFSEIRRVLVPD 133 (246)
T ss_dssp HHHCSCHHHHHHHHHHHEEEE
T ss_pred hhhhhhHHHHHHHHHhhcCcC
Confidence 999999999999999999986
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.62 E-value=4.1e-16 Score=117.41 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=79.0
Q ss_pred HHHHhc-cCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCC
Q 030935 60 EYVWQQ-RYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDL 138 (169)
Q Consensus 60 ~~l~~~-~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~ 138 (169)
+|+.+. ...+++++|||||||+|..+..+++.|.+|+++|++ +++++.++++... .+++. .++......+.
T Consensus 9 ~~~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s--~~~i~~a~~~~~~---~~~~~---~~~~~~~~~~~ 80 (225)
T d2p7ia1 9 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEAS--EEAISHAQGRLKD---GITYI---HSRFEDAQLPR 80 (225)
T ss_dssp HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESC--HHHHHHHHHHSCS---CEEEE---ESCGGGCCCSS
T ss_pred HHHHHHhhhhCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCc--HHHhhhhhccccc---ccccc---ccccccccccc
Confidence 444333 234578899999999999999999999999999999 5699999876432 23333 23333333457
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHH-HhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILI-CSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~-~~L~p~ 169 (169)
+||+|++.++++|..+...+++.+. +.|+|+
T Consensus 81 ~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~g 112 (225)
T d2p7ia1 81 RYDNIVLTHVLEHIDDPVALLKRINDDWLAEG 112 (225)
T ss_dssp CEEEEEEESCGGGCSSHHHHHHHHHHTTEEEE
T ss_pred ccccccccceeEecCCHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999998 689985
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.62 E-value=8.3e-16 Score=116.81 Aligned_cols=96 Identities=15% Similarity=-0.022 Sum_probs=77.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc-C
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA-D 147 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s-d 147 (169)
.++++|||+|||+|..++.++++|.+|+++|.| +.|++.|++++..++.++++...++. ....+.+||+|+|. .
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S--~~ml~~A~~~~~~~~~~v~~~~~d~~---~~~~~~~fD~i~~~~~ 110 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLS--QEMLSEAENKFRSQGLKPRLACQDIS---NLNINRKFDLITCCLD 110 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSC--HHHHHHHHHHHHHTTCCCEEECCCGG---GCCCSCCEEEEEECTT
T ss_pred CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccc--hhhhhhccccccccCccceeeccchh---hhcccccccccceeee
Confidence 356799999999999999999999999999999 67999999999888887765543333 33345689999985 5
Q ss_pred cCCCC---CChHHHHHHHHHhccCC
Q 030935 148 VFYDA---SGKICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~---~~~~~l~~~l~~~L~p~ 169 (169)
++++. .+...+++.+.++|+|+
T Consensus 111 ~~~~~~~~~~~~~~l~~~~~~Lkpg 135 (246)
T d1y8ca_ 111 STNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp GGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred eeeccCCHHHHHHHHHHHHHhCCCC
Confidence 66544 45667899999999985
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=2e-15 Score=117.37 Aligned_cols=106 Identities=15% Similarity=0.170 Sum_probs=84.5
Q ss_pred HHHHHhcc-CCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 59 AEYVWQQR-YRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 59 a~~l~~~~-~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
.+|+.+.. ...++.+|||+|||+|..++.+++. +++|+++|++ +.+++.+++++...+.++.+.. ++....
T Consensus 15 l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s--~~~l~~a~~~~~~~~~~~~f~~---~d~~~~ 89 (281)
T d2gh1a1 15 VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSG--ETLLAEARELFRLLPYDSEFLE---GDATEI 89 (281)
T ss_dssp HHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECC--HHHHHHHHHHHHSSSSEEEEEE---SCTTTC
T ss_pred HHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecc--hhHhhhhhcccccccccccccc---cccccc
Confidence 35555432 3446779999999999999999874 5689999999 5699999999988777655443 333332
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+.+||+|+++.++++..+...+++.+.+.||||
T Consensus 90 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg 124 (281)
T d2gh1a1 90 ELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKG 124 (281)
T ss_dssp CCSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE
T ss_pred cccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcC
Confidence 23458999999999999999999999999999996
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.60 E-value=1.9e-15 Score=119.89 Aligned_cols=104 Identities=21% Similarity=0.193 Sum_probs=81.0
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLN 139 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~ 139 (169)
+.++...++|++|||||||+|++++.+|+.|+ +|+++|.++ +++.++++++.++...++..+ .++... ...+.+
T Consensus 30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~---~~~~a~~~~~~~~~~~~i~~i-~~~~~~l~~~~~~ 105 (328)
T d1g6q1_ 30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS---IIEMAKELVELNGFSDKITLL-RGKLEDVHLPFPK 105 (328)
T ss_dssp HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST---HHHHHHHHHHHTTCTTTEEEE-ESCTTTSCCSSSC
T ss_pred HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH---HHHHHHHHHHHhCccccceEE-EeehhhccCcccc
Confidence 34444456899999999999999999999998 899999985 778899999999886554433 333322 334569
Q ss_pred CcEEEEcCcC---CCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVF---YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~i---y~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++..+. .+...++.++..+.+.|||+
T Consensus 106 ~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg 138 (328)
T d1g6q1_ 106 VDIIISEWMGYFLLYESMMDTVLYARDHYLVEG 138 (328)
T ss_dssp EEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE
T ss_pred eeEEEEEecceeeccchhHHHHHHHHHhccCCC
Confidence 9999986554 46677889999999999985
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=1.7e-15 Score=119.63 Aligned_cols=104 Identities=21% Similarity=0.220 Sum_probs=80.2
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLN 139 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~ 139 (169)
+.++...++|++|||||||+|++++++|++|+ +|+++|.++ ++..++++++.|+...++. +..++... .....+
T Consensus 25 i~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~---~~~~a~~~~~~n~~~~~v~-~~~~~~~~~~~~~~~ 100 (316)
T d1oria_ 25 MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS---ISDYAVKIVKANKLDHVVT-IIKGKVEEVELPVEK 100 (316)
T ss_dssp HHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST---THHHHHHHHHHTTCTTTEE-EEESCTTTCCCSSSC
T ss_pred HHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcH---HHhhhhhHHHHhCCccccc-eEeccHHHcccccce
Confidence 44555566899999999999999999999997 799999985 5577788888888875544 33344333 334469
Q ss_pred CcEEEEcCcC---CCCCChHHHHHHHHHhccCC
Q 030935 140 PNIILGADVF---YDASGKICAFEILICSLFPI 169 (169)
Q Consensus 140 fDlIi~sd~i---y~~~~~~~l~~~l~~~L~p~ 169 (169)
||+|++.-+. ++...++.++..+.+.|+|+
T Consensus 101 ~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~ 133 (316)
T d1oria_ 101 VDIIISEWMGYCLFYESMLNTVLHARDKWLAPD 133 (316)
T ss_dssp EEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE
T ss_pred eEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC
Confidence 9999985443 45577899999999999985
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=1.2e-14 Score=113.18 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=89.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.....+.+.+.....+|.+|||||||.|.+++.+++. |++|+++|+| +++++.+++.++..++...+. ....+..
T Consensus 37 Q~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls--~~q~~~a~~~~~~~~l~~~~~-~~~~d~~- 112 (280)
T d2fk8a1 37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLS--KNQHARCEQVLASIDTNRSRQ-VLLQGWE- 112 (280)
T ss_dssp HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTSCCSSCEE-EEESCGG-
T ss_pred HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecch--HHHHHHHHHHHHhhccccchh-hhhhhhh-
Confidence 3445566777777778999999999999999988875 8899999999 569999999999888876544 3333332
Q ss_pred CCCCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 134 SIFDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
..+.+||.|++.+++.+.. .++.+++.+.+.|||+
T Consensus 113 -~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg 149 (280)
T d2fk8a1 113 -DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD 149 (280)
T ss_dssp -GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT
T ss_pred -hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC
Confidence 2356999999999999884 5689999999999996
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.58 E-value=7.5e-15 Score=110.20 Aligned_cols=96 Identities=15% Similarity=0.128 Sum_probs=78.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
++.+|||||||+|..+..+++. +++|+++|.| +.|++.|+++++..+....+. ...++.. .....++|+|++
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S--~~ml~~A~~~~~~~~~~~~~~-~~~~d~~-~~~~~~~d~i~~ 114 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNS--QPMVERCRQHIAAYHSEIPVE-ILCNDIR-HVEIKNASMVIL 114 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSC--HHHHHHHHHHHHTSCCSSCEE-EECSCTT-TCCCCSEEEEEE
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCC--HHHHHHHHHHhHhhcccchhh-hccchhh-ccccccceeeEE
Confidence 6789999999999999998873 5699999999 579999999998777665544 4444432 334458899999
Q ss_pred cCcCCCC--CChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
+.++++. ++...+++.+.+.|+|+
T Consensus 115 ~~~l~~~~~~d~~~~l~~i~~~Lkpg 140 (225)
T d1im8a_ 115 NFTLQFLPPEDRIALLTKIYEGLNPN 140 (225)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHEEEE
T ss_pred eeeccccChhhHHHHHHHHHHhCCCC
Confidence 9999876 47789999999999996
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-14 Score=114.42 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=76.9
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDL 138 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~ 138 (169)
.+.++...++|++|||||||+|++++.+|+.|+ +|+++|.++. + ..+++++..++...++..+. ++..+ .....
T Consensus 26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~--~-~~a~~~~~~~~~~~~i~~~~-~~~~~l~~~~~ 101 (311)
T d2fyta1 26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEI--L-YQAMDIIRLNKLEDTITLIK-GKIEEVHLPVE 101 (311)
T ss_dssp HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTH--H-HHHHHHHHHTTCTTTEEEEE-SCTTTSCCSCS
T ss_pred HHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHH--H-HHHHHHHHHhCCCccceEEE-eeHHHhcCccc
Confidence 355666678999999999999999999999998 8999999962 4 45677777777765544333 33332 33446
Q ss_pred CCcEEEEcCcCC---CCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFY---DASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy---~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|++.-+.+ ....++.++....+.|+|+
T Consensus 102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~ 135 (311)
T d2fyta1 102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKG 135 (311)
T ss_dssp CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEE
T ss_pred cceEEEEeeeeeecccccccHHHHHHHHhcCCCC
Confidence 999999854443 3345677888888889885
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.56 E-value=2.7e-15 Score=106.85 Aligned_cols=97 Identities=19% Similarity=0.170 Sum_probs=76.4
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCCCCCcEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIIL 144 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~~~fDlIi 144 (169)
.++|++|||+|||||.+|+.++++|+ +|+++|.+ +++++.+++|++.++...++. +..++... .....+||+|+
T Consensus 12 ~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~--~~a~~~~~~n~~~~~~~~~~~-ii~~D~~~~l~~~~~~fDiIf 88 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKN--RKAQAIIQDNIIMTKAENRFT-LLKMEAERAIDCLTGRFDLVF 88 (152)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCC--HHHHHHHHHHHHTTTCGGGEE-EECSCHHHHHHHBCSCEEEEE
T ss_pred hCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhc--hhhhhhhhhhhhhcccccchh-hhcccccccccccccccceeE
Confidence 46899999999999999999999998 89999999 679999999999998875544 33333322 12345899999
Q ss_pred EcCcCCCCCChHHHHHHHHHh--ccC
Q 030935 145 GADVFYDASGKICAFEILICS--LFP 168 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~--L~p 168 (169)
+ |+.|........+..|.+. |+|
T Consensus 89 ~-DPPy~~~~~~~~l~~i~~~~~L~~ 113 (152)
T d2esra1 89 L-DPPYAKETIVATIEALAAKNLLSE 113 (152)
T ss_dssp E-CCSSHHHHHHHHHHHHHHTTCEEE
T ss_pred e-chhhccchHHHHHHHHHHCCCcCC
Confidence 8 8888877778888877653 554
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.9e-15 Score=111.67 Aligned_cols=99 Identities=12% Similarity=-0.062 Sum_probs=75.7
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEE
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIIL 144 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi 144 (169)
...++.+|||||||+|..+..+++.+ .+|+++|++ +.|++.|++++..++... ..+..++... ...+.+||+|+
T Consensus 57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s--~~~l~~ak~~~~~~~~~~--~~f~~~d~~~~~~~~~~fD~I~ 132 (222)
T d2ex4a1 57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDIT--EDFLVQAKTYLGEEGKRV--RNYFCCGLQDFTPEPDSYDVIW 132 (222)
T ss_dssp -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESC--HHHHHHHHHHTGGGGGGE--EEEEECCGGGCCCCSSCEEEEE
T ss_pred CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecC--HHHhhccccccccccccc--cccccccccccccccccccccc
Confidence 34456799999999999998876554 489999999 569999999987766532 2233444433 23356999999
Q ss_pred EcCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 145 GADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+..++++..+. ..+++.+++.|+|+
T Consensus 133 ~~~~l~h~~~~~~~~~l~~i~~~Lk~~ 159 (222)
T d2ex4a1 133 IQWVIGHLTDQHLAEFLRRCKGSLRPN 159 (222)
T ss_dssp EESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cccccccchhhhhhhHHHHHHHhcCCc
Confidence 99999998654 57999999999984
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.54 E-value=5.5e-15 Score=107.44 Aligned_cols=109 Identities=12% Similarity=-0.107 Sum_probs=78.9
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceE---E-------EEE
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV---M-------GLT 127 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~---~-------~l~ 127 (169)
|-+|+... ...+|.+|||+|||+|..++.+|++|.+|+++|+| +.|++.++++++..+..... . .+.
T Consensus 9 ~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S--~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 9 LQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELS--EAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEEC--HHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHcCCceEeeccc--HHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 44454433 35588999999999999999999999999999999 56999999988654321100 0 112
Q ss_pred cCCCCcCC--CCCCCcEEEEcCcCCCCC--ChHHHHHHHHHhccCC
Q 030935 128 WGFLDASI--FDLNPNIILGADVFYDAS--GKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~--~~~~fDlIi~sd~iy~~~--~~~~l~~~l~~~L~p~ 169 (169)
.++..... ....||+|+++.++++.. .....++.+++.|||+
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg 131 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA 131 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC
Confidence 22222111 123899999999998775 4688999999999995
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.54 E-value=9.6e-15 Score=111.52 Aligned_cols=98 Identities=17% Similarity=0.056 Sum_probs=76.1
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC-cCC-CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD-ASI-FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~-~~~-~~~~fDlIi~ 145 (169)
.++++|||||||+|.....+++.+. +|+++|+| +.|++.|+++....+....+. +..++.. ... ...+||+|+|
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S--~~~l~~A~~r~~~~~~~~~v~-f~~~D~~~~~~~~~~~fD~V~~ 99 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIA--EVSINDARVRARNMKRRFKVF-FRAQDSYGRHMDLGKEFDVISS 99 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESC--HHHHHHHHHHHHTSCCSSEEE-EEESCTTTSCCCCSSCEEEEEE
T ss_pred CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCC--HHHHHHHHHHHHhcCCCcceE-EEEcchhhhcccccccceEEEE
Confidence 3678999999999998888888876 79999999 569999999887766654443 3333332 222 3458999999
Q ss_pred cCcCCCC----CChHHHHHHHHHhccCC
Q 030935 146 ADVFYDA----SGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~----~~~~~l~~~l~~~L~p~ 169 (169)
..++++. ..+..+++.+.+.|+||
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~i~~~Lk~g 127 (252)
T d1ri5a_ 100 QFSFHYAFSTSESLDIAQRNIARHLRPG 127 (252)
T ss_dssp ESCGGGGGSSHHHHHHHHHHHHHTEEEE
T ss_pred cceeeecCCCHHHHHHHHHHHhceeCCC
Confidence 9999875 34567999999999985
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.54 E-value=9.1e-14 Score=108.67 Aligned_cols=111 Identities=12% Similarity=-0.026 Sum_probs=90.7
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
+-....+++.+.....+|.+|||||||.|.+++.+|+ .|++|+++++| ++.++.+++.++..++...+. ..+.+..
T Consensus 45 Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s--~~q~~~a~~~~~~~~l~~~v~-~~~~d~~ 121 (291)
T d1kpia_ 45 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLS--ENQYAHDKAMFDEVDSPRRKE-VRIQGWE 121 (291)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHSCCSSCEE-EEECCGG
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccch--HHHHHHHHHHHHhhccchhhh-hhhhccc
Confidence 3455667777777888999999999999999997775 78999999999 568999999999888875544 4455432
Q ss_pred cCCCCCCCcEEEEcCcCCCCCC---------hHHHHHHHHHhccCC
Q 030935 133 ASIFDLNPNIILGADVFYDASG---------KICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~~~~~fDlIi~sd~iy~~~~---------~~~l~~~l~~~L~p~ 169 (169)
..+.+||.|++-.++-|..+ ++.+++.+.+.|+||
T Consensus 122 --~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg 165 (291)
T d1kpia_ 122 --EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD 165 (291)
T ss_dssp --GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT
T ss_pred --ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC
Confidence 34569999999999988754 689999999999997
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=2.8e-14 Score=103.50 Aligned_cols=107 Identities=17% Similarity=0.118 Sum_probs=76.6
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--C
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S 134 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~ 134 (169)
.|..++..+ ..+|.+|||+|||+|.+|+.++++|++|+++|.+ +.+++.+++|++.+++..++...+...... .
T Consensus 30 ~lf~~l~~~--~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~--~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~ 105 (171)
T d1ws6a1 30 ALFDYLRLR--YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKD--PEAVRLLKENVRRTGLGARVVALPVEVFLPEAK 105 (171)
T ss_dssp HHHHHHHHH--CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCC--HHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred HHHHHhhcc--ccCCCeEEEeccccchhhhhhhhccchhhhcccC--HHHHhhhhHHHHhhccccceeeeehhccccccc
Confidence 444555543 3478899999999999999999999999999999 579999999999999887655333322111 1
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHH-hccC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILIC-SLFP 168 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~-~L~p 168 (169)
....+||+|++ |+-|.....+.+.+.+.. .|+|
T Consensus 106 ~~~~~fD~If~-DPPY~~~~~~~l~~l~~~~ll~~ 139 (171)
T d1ws6a1 106 AQGERFTVAFM-APPYAMDLAALFGELLASGLVEA 139 (171)
T ss_dssp HTTCCEEEEEE-CCCTTSCTTHHHHHHHHHTCEEE
T ss_pred ccCCccceeEE-ccccccCHHHHHHHHHHcCCcCC
Confidence 23458999997 777876554444444432 3554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=1.2e-14 Score=113.18 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=73.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-----eEEEEEcCCCCc-CCCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-----RVMGLTWGFLDA-SIFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-----~~~~l~~~~~~~-~~~~~~fDlI 143 (169)
.+++|||+|||+|..++.+++.|++|+++|+| +.|++.|+++...++... .+...+|..... .....+||+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S--~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v 133 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDAS--DKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 133 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred CCCEEEEecCCCcHHHHHHHHcCCeeeeccCc--hHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence 56799999999999999999999999999999 579999999987766532 233344432221 1234589999
Q ss_pred EEc-CcCCCCC-------ChHHHHHHHHHhccCC
Q 030935 144 LGA-DVFYDAS-------GKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~s-d~iy~~~-------~~~~l~~~l~~~L~p~ 169 (169)
+|. +++.+.. +...+++.+.+.|+||
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 167 (292)
T d1xvaa_ 134 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG 167 (292)
T ss_dssp EECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE
T ss_pred EEecCchhhcCCcccChHHHHHHHHHHHHHcCcC
Confidence 975 4565442 3567999999999996
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.5e-13 Score=106.60 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=75.2
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
|.++.|.++...... .++.+|||||||+|.+++.+++.. ++|+++|++ +.+++.|++|++.++++ ++ .+..++
T Consensus 92 peTE~lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis--~~Al~~A~~Na~~~~~~-~v-~~~~~d 166 (274)
T d2b3ta1 92 PDTECLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRM--PDAVSLAQRNAQHLAIK-NI-HILQSD 166 (274)
T ss_dssp TTHHHHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSS--HHHHHHHHHHHHHHTCC-SE-EEECCS
T ss_pred cchhhhhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccch--hHHHhHHHHHHHHhCcc-cc-eeeecc
Confidence 578888888776543 355689999999999999998864 489999999 56999999999999985 22 355566
Q ss_pred CCcCCCCCCCcEEEEcCcCCCCC
Q 030935 131 LDASIFDLNPNIILGADVFYDAS 153 (169)
Q Consensus 131 ~~~~~~~~~fDlIi~sd~iy~~~ 153 (169)
........+||+|+|+.+.....
T Consensus 167 ~~~~~~~~~fDlIvsNPPYi~~~ 189 (274)
T d2b3ta1 167 WFSALAGQQFAMIVSNPPYIDEQ 189 (274)
T ss_dssp TTGGGTTCCEEEEEECCCCBCTT
T ss_pred cccccCCCceeEEEecchhhhhh
Confidence 65555667999999987765443
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=2.3e-13 Score=106.04 Aligned_cols=112 Identities=12% Similarity=0.027 Sum_probs=91.2
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
.+...+.+++.......+|.+|||||||.|.+++.+|+ .|++|+++.+| ++.++.+++.++..++..++. +...+.
T Consensus 45 eAQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s--~~Q~~~a~~~~~~~g~~~~v~-~~~~d~ 121 (285)
T d1kpga_ 45 EAQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLS--KNQANHVQQLVANSENLRSKR-VLLAGW 121 (285)
T ss_dssp HHHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHTCCCCSCEE-EEESCG
T ss_pred HHHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEecc--HHHHHHHHHHHHhhhhhhhhH-HHHhhh
Confidence 34566678888888888999999999999999997665 68999999999 569999999988887765543 344443
Q ss_pred CcCCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 132 DASIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 132 ~~~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
.. .+.+||-|++-..+.+. ...+.+++.+.+.|+|+
T Consensus 122 ~~--~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg 159 (285)
T d1kpga_ 122 EQ--FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD 159 (285)
T ss_dssp GG--CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT
T ss_pred hc--ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC
Confidence 22 24699999999999988 55699999999999996
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.3e-15 Score=112.24 Aligned_cols=98 Identities=13% Similarity=0.088 Sum_probs=76.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE----
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL---- 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi---- 144 (169)
+|.+|||+|||+|..+..+++.+ ++|+++|++ +.+++.++++.+..+..+.....++..........+||.|+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECN--DGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECC--HHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCC--HHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 67899999999999999999875 589999999 67999999998877666555444444333344556899887
Q ss_pred -EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 -GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 -~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+...+++..+.+.+++.+++.||||
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~LkpG 156 (229)
T d1zx0a1 131 PLSEETWHTHQFNFIKNHAFRLLKPG 156 (229)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEE
T ss_pred ccccccccccCHHHHHHHHHHHcCCC
Confidence 3444556667888999999999996
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3e-14 Score=107.34 Aligned_cols=113 Identities=12% Similarity=-0.048 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC--------------
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL-------------- 119 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~-------------- 119 (169)
....|.+++.+.....++.+|||+|||+|..++.+|++|.+|+++|+| +.+++.++++......
T Consensus 29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S--~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEIS--ELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSC--HHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCC--HHHHHHHHHHhhccccccchhcccccceee
Confidence 456677777766555678899999999999999999999999999999 5699988877543211
Q ss_pred --cceEEEEEcCCCCc--CCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 120 --NCRVMGLTWGFLDA--SIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 120 --~~~~~~l~~~~~~~--~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
... ..+..++... ......||+|+...++++. +..+..++.+.++|+|+
T Consensus 107 ~~~~~-v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 107 SSSGN-ISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK 161 (229)
T ss_dssp ETTSS-EEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE
T ss_pred ecCCc-EEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc
Confidence 011 1233333322 2234589999999998866 56788999999999995
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.48 E-value=4.6e-14 Score=108.23 Aligned_cols=103 Identities=10% Similarity=-0.005 Sum_probs=75.6
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-CCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDL 138 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-~~~~ 138 (169)
.+++......+.+|||+|||+|.++..++.. +.+|+++|.+ +.|++.|+++....+ .++ +..++.... ..+.
T Consensus 84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s--~~~l~~a~~~~~~~~-~~~---~~~~d~~~~~~~~~ 157 (254)
T d1xtpa_ 84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPV--KHMLEEAKRELAGMP-VGK---FILASMETATLPPN 157 (254)
T ss_dssp HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESC--HHHHHHHHHHTTTSS-EEE---EEESCGGGCCCCSS
T ss_pred HHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCC--HHHHHhhhccccccc-cce---eEEccccccccCCC
Confidence 3333444456779999999999999877654 5589999999 569999998765322 122 334444332 3346
Q ss_pred CCcEEEEcCcCCCCCCh--HHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+||+|++..+++|..+. ..+++.+++.|+|+
T Consensus 158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg 190 (254)
T d1xtpa_ 158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN 190 (254)
T ss_dssp CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred ccceEEeeccccccchhhhHHHHHHHHHhcCCC
Confidence 89999999999998664 58899999999985
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.47 E-value=1.4e-13 Score=102.09 Aligned_cols=78 Identities=22% Similarity=0.210 Sum_probs=62.9
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...++|++|||+|||||.+++.++..|+ +|+++|++ +.+++.+++|++.++...++.. ++... .+.+||+|+
T Consensus 42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~--~~~~~~a~~N~~~~~~~~~~~~---~d~~~--~~~~fD~Vi 114 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVD--KEAVDVLIENLGEFKGKFKVFI---GDVSE--FNSRVDIVI 114 (201)
T ss_dssp TTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHTGGGTTSEEEEE---SCGGG--CCCCCSEEE
T ss_pred cCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCc--HHHHHHHHHHHHHcCCCceEEE---Cchhh--hCCcCcEEE
Confidence 4567899999999999999999999987 89999999 5799999999999888765542 33222 356899999
Q ss_pred EcCcCC
Q 030935 145 GADVFY 150 (169)
Q Consensus 145 ~sd~iy 150 (169)
++.+..
T Consensus 115 ~nPP~~ 120 (201)
T d1wy7a1 115 MNPPFG 120 (201)
T ss_dssp ECCCCS
T ss_pred EcCccc
Confidence 866543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.46 E-value=2.4e-13 Score=104.13 Aligned_cols=101 Identities=13% Similarity=0.064 Sum_probs=76.6
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
++....+..+|.+|||+|||+|.+++.+|+. + .+|+++|.+ +++++.|++|++.++...++. +..++..+...+
T Consensus 76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~--e~~~~~A~~n~~~~~~~~nv~-~~~~Di~~~~~~ 152 (250)
T d1yb2a1 76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERD--EDNLKKAMDNLSEFYDIGNVR-TSRSDIADFISD 152 (250)
T ss_dssp -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSC--HHHHHHHHHHHHTTSCCTTEE-EECSCTTTCCCS
T ss_pred HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECC--HHHHHHHHHHHHHhcCCCceE-EEEeeeeccccc
Confidence 4555566778999999999999999999985 3 489999999 579999999998875543333 455666555556
Q ss_pred CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 138 LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..||.|+. +..+...+++.+.+.||||
T Consensus 153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpG 179 (250)
T d1yb2a1 153 QMYDAVIA-----DIPDPWNHVQKIASMMKPG 179 (250)
T ss_dssp CCEEEEEE-----CCSCGGGSHHHHHHTEEEE
T ss_pred ceeeeeee-----cCCchHHHHHHHHHhcCCC
Confidence 78999986 3456778899999999986
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=1.4e-13 Score=106.19 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=70.7
Q ss_pred eEEEECCCCCHHHHHHHHh------CC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC---------cCC
Q 030935 73 NVVELGAGTSLPGLVAAKV------GS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD---------ASI 135 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~------ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~---------~~~ 135 (169)
+|||+|||+|.++..+++. +. +++++|.+ +.|++.++++++....... ..+.|.... ...
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s--~~~l~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS--AEQIAKYKELVAKISNLEN-VKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCC--HHHHHHHHHHHTTCCSCTT-EEEEEECSCHHHHHHHHTTSS
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCc--HHHHHHHHHHHhhcccccc-ccccchhhhhhhhcchhcccC
Confidence 7999999999998877653 22 68999999 5699999998864322111 223333211 123
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+.+||+|+|..++|+..+++.+++.+.+.|+|+
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg 153 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN 153 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCCCC
Confidence 4569999999999999999999999999999985
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=9.6e-13 Score=101.56 Aligned_cols=103 Identities=13% Similarity=0.021 Sum_probs=82.4
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI 135 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~ 135 (169)
+.++....+..+|.+|||+|||+|.+++.+|+.. .+|+++|++ +++++.|++|++..++...+. +..++.....
T Consensus 92 ~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~--~~~~~~A~~~~~~~g~~~~v~-~~~~d~~~~~ 168 (266)
T d1o54a_ 92 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKR--EEFAKLAESNLTKWGLIERVT-IKVRDISEGF 168 (266)
T ss_dssp HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCC--HHHHHHHHHHHHHTTCGGGEE-EECCCGGGCC
T ss_pred HHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCC--HHHHHHHHHHHHHhccccCcE-EEeccccccc
Confidence 4455555667789999999999999999999852 489999999 679999999999988754443 5566655555
Q ss_pred CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 136 FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
....||.|+. +..+...+++.+.+.||||
T Consensus 169 ~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpG 197 (266)
T d1o54a_ 169 DEKDVDALFL-----DVPDPWNYIDKCWEALKGG 197 (266)
T ss_dssp SCCSEEEEEE-----CCSCGGGTHHHHHHHEEEE
T ss_pred cccceeeeEe-----cCCCHHHHHHHHHhhcCCC
Confidence 5567888864 5678889999999999996
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7.6e-13 Score=96.71 Aligned_cols=95 Identities=16% Similarity=0.029 Sum_probs=74.4
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~~~fDlIi~ 145 (169)
+.+++||||+||||.+|+.++.+|+ +|+++|.+ +.+++.+++|++.++... .. ...++... .....+||+|++
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~--~~a~~~~k~N~~~~~~~~-~~-ii~~d~~~~l~~~~~~fDlIf~ 117 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMD--RAVSQQLIKNLATLKAGN-AR-VVNSNAMSFLAQKGTPHNIVFV 117 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCS-EE-EECSCHHHHHSSCCCCEEEEEE
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEe--echhhHHHHHHhhccccc-ee-eeeecccccccccccccCEEEE
Confidence 4788999999999999999999998 79999999 579999999999877642 22 22333222 123458999997
Q ss_pred cCcCCCCCChHHHHHHHHHh--ccC
Q 030935 146 ADVFYDASGKICAFEILICS--LFP 168 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~--L~p 168 (169)
|+-|.....+.++..|.+. |+|
T Consensus 118 -DPPY~~~~~~~~l~~l~~~~~L~~ 141 (183)
T d2fpoa1 118 -DPPFRRGLLEETINLLEDNGWLAD 141 (183)
T ss_dssp -CCSSSTTTHHHHHHHHHHTTCEEE
T ss_pred -cCccccchHHHHHHHHHHCCCCCC
Confidence 7889888899999888763 544
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.40 E-value=8.4e-13 Score=100.74 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=75.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
...++|||||||+|..++.+++.. .+++++|+++ +++.+++++...++..++. +..++..+. .+.+||+|+++
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~---~~~~a~~~~~~~~~~~rv~-~~~~D~~~~-~~~~~D~v~~~ 153 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAG---TVDTARSYLKDEGLSDRVD-VVEGDFFEP-LPRKADAIILS 153 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTT---HHHHHHHHHHHTTCTTTEE-EEECCTTSC-CSSCEEEEEEE
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHH---HHHHHHHHHHHhhcccchh-hccccchhh-cccchhheeec
Confidence 355799999999999999999874 4899999853 8999999999888765543 334454333 23579999999
Q ss_pred CcCCCCCCh--HHHHHHHHHhccCC
Q 030935 147 DVFYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 147 d~iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
.++|+..+. ..+++.++++|+||
T Consensus 154 ~vlh~~~d~~~~~~L~~~~~~LkPG 178 (253)
T d1tw3a2 154 FVLLNWPDHDAVRILTRCAEALEPG 178 (253)
T ss_dssp SCGGGSCHHHHHHHHHHHHHTEEEE
T ss_pred cccccCCchhhHHHHHHHHHhcCCC
Confidence 999987554 47899999999996
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=1e-12 Score=98.22 Aligned_cols=104 Identities=17% Similarity=0.078 Sum_probs=76.8
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD 132 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~ 132 (169)
..+...+++.....+|.+|||+|||+|..+..+|+. + .+|+++|++ +++++.+++|++..+..... ...++..
T Consensus 61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~--~~~~~~a~~~~~~~~~~n~~--~~~~d~~ 136 (213)
T d1dl5a1 61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYS--RKICEIAKRNVERLGIENVI--FVCGDGY 136 (213)
T ss_dssp HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHTTCCSEE--EEESCGG
T ss_pred chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecc--hhhHHHhhhhHhhhcccccc--cccCchH
Confidence 344444555666778999999999999999999874 3 389999999 57999999999988876432 3345543
Q ss_pred cCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 133 ASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 133 ~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
... ...+||+|++...+++.. +.+.+.|+||
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpG 168 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEG 168 (213)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEE
T ss_pred HccccccchhhhhhhccHHHhH------HHHHHhcCCC
Confidence 322 335899999998887653 3466778875
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=9.1e-13 Score=99.66 Aligned_cols=119 Identities=8% Similarity=-0.039 Sum_probs=88.2
Q ss_pred cceeecchHH-HHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc
Q 030935 47 YGLFVWPCSV-ILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 47 ~g~~~W~~~~-~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~ 120 (169)
...+.|..-. .||.-+... .+..+|.+|||||||+|..+..+|+.+ ..|+++|++ ++|++.+++++..+...
T Consensus 47 ~e~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS--~~~i~~a~~~a~~~~ni 124 (230)
T d1g8sa_ 47 EEYRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYA--PRIMRELLDACAERENI 124 (230)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESC--HHHHHHHHHHTTTCTTE
T ss_pred ceeeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCc--HHHHHHHHHHHhhhccc
Confidence 4689998855 666666553 345678999999999999999999875 489999999 67999999887654432
Q ss_pred ceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 121 CRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+...+.... ....+..+|++++...+++..+.+.+++.+.+.|||+
T Consensus 125 -~~i~~d~~~~-~~~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg 171 (230)
T d1g8sa_ 125 -IPILGDANKP-QEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKG 171 (230)
T ss_dssp -EEEECCTTCG-GGGTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEE
T ss_pred -ceEEEeeccC-cccccccceeEEeeccccchHHHHHHHHHHHHhcccC
Confidence 2222222222 1233457788777777888899999999999999985
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.40 E-value=2.3e-13 Score=100.42 Aligned_cols=85 Identities=15% Similarity=0.020 Sum_probs=66.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~ 148 (169)
++.+|||||||+|..+..+ ++++++|.+ +.+++.++++ + +.+.. ++... +..+.+||+|+++.+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s--~~~~~~a~~~----~--~~~~~---~d~~~l~~~~~~fD~I~~~~~ 100 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPS--ERMAEIARKR----G--VFVLK---GTAENLPLKDESFDFALMVTT 100 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH----TCCEEEESC--HHHHHHHHHT----T--CEEEE---CBTTBCCSCTTCEEEEEEESC
T ss_pred CCCeEEEECCCCccccccc----ceEEEEeCC--hhhccccccc----c--ccccc---ccccccccccccccccccccc
Confidence 4568999999999876655 457999999 5699988763 2 23332 33222 344569999999999
Q ss_pred CCCCCChHHHHHHHHHhccCC
Q 030935 149 FYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+++..+...+++.+++.|+|+
T Consensus 101 l~h~~d~~~~l~~~~~~L~pg 121 (208)
T d1vlma_ 101 ICFVDDPERALKEAYRILKKG 121 (208)
T ss_dssp GGGSSCHHHHHHHHHHHEEEE
T ss_pred cccccccccchhhhhhcCCCC
Confidence 999999999999999999985
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=1.7e-12 Score=96.73 Aligned_cols=117 Identities=12% Similarity=-0.038 Sum_probs=80.4
Q ss_pred ceeecchHH-HHHHHHHh--ccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcce
Q 030935 48 GLFVWPCSV-ILAEYVWQ--QRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCR 122 (169)
Q Consensus 48 g~~~W~~~~-~La~~l~~--~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~ 122 (169)
|.+.|..-+ .||..++. ..+..+|.+|||||||+|.....+++.. .+|+++|++ ++|++.++++++..+ ++.
T Consensus 31 ~~r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis--~~~i~~a~~~a~~~~-ni~ 107 (209)
T d1nt2a_ 31 GYREWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYS--AKPFEKLLELVRERN-NII 107 (209)
T ss_dssp TEEECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCC--HHHHHHHHHHHHHCS-SEE
T ss_pred ceeeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCC--HHHHHHHHHHhhccC-Cce
Confidence 568888543 56666654 3455688999999999999999998853 389999999 679999999887654 222
Q ss_pred EEEEEcCCCCcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 123 VMGLTWGFLDASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 123 ~~~l~~~~~~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+...+..+..... ....+|+|++ | +++..+.+.+++.+.+.|||+
T Consensus 108 ~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~Lkpg 153 (209)
T d1nt2a_ 108 PLLFDASKPWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEK 153 (209)
T ss_dssp EECSCTTCGGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEE
T ss_pred EEEeeccCccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccC
Confidence 2222222211111 1124555554 3 666778889999999999985
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.38 E-value=6.4e-13 Score=97.09 Aligned_cols=97 Identities=15% Similarity=0.139 Sum_probs=76.2
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---C--CCCCCCc
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---S--IFDLNPN 141 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~--~~~~~fD 141 (169)
..+|++||||+||||.+|+.++.+|| +|+++|.+ +.+++.+++|++.++...++. +..++... . ....+||
T Consensus 39 ~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~--~~a~~~~~~N~~~~~~~~~~~-i~~~D~~~~l~~~~~~~~~fD 115 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKN--FAALKVIKENIAITKEPEKFE-VRKMDANRALEQFYEEKLQFD 115 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHHTCGGGEE-EEESCHHHHHHHHHHTTCCEE
T ss_pred hcCCCEEEEcccccccccceeeecchhHHHHHHHH--HHHHHHHHHHhhhhhcccccc-cccccchhhhhhhcccCCCcc
Confidence 45789999999999999999999999 79999999 579999999999888765443 33444322 1 1234899
Q ss_pred EEEEcCcCCCCCChHHHHHHHHH--hccC
Q 030935 142 IILGADVFYDASGKICAFEILIC--SLFP 168 (169)
Q Consensus 142 lIi~sd~iy~~~~~~~l~~~l~~--~L~p 168 (169)
+|++ |+-|....+..++..|.+ .|+|
T Consensus 116 lIfl-DPPY~~~~~~~~l~~i~~~~~L~~ 143 (182)
T d2fhpa1 116 LVLL-DPPYAKQEIVSQLEKMLERQLLTN 143 (182)
T ss_dssp EEEE-CCCGGGCCHHHHHHHHHHTTCEEE
T ss_pred eEEe-chhhhhhHHHHHHHHHHHCCCCCC
Confidence 9996 888988888888888865 3554
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=9.7e-13 Score=99.08 Aligned_cols=104 Identities=16% Similarity=0.134 Sum_probs=73.4
Q ss_pred HHHHHHhcc--CCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCc---ceEEEEEcC
Q 030935 58 LAEYVWQQR--YRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWG 129 (169)
Q Consensus 58 La~~l~~~~--~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~---~~~~~l~~~ 129 (169)
+...|++.. ...+|.+|||+|||+|..+..+|+. + .+|+++|.+ +++++.+++|++..++. .....+..+
T Consensus 62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~--~~l~~~a~~~l~~~~~~~~~~~~~~~~~g 139 (224)
T d1i1na_ 62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHI--KELVDDSVNNVRKDDPTLLSSGRVQLVVG 139 (224)
T ss_dssp HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHHHHHCTHHHHTSSEEEEES
T ss_pred HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCC--HHHHHHHHHhccccCcccccccceEEEEe
Confidence 333444433 4567889999999999999888875 3 489999999 57999999999877653 112224445
Q ss_pred CCCcCC-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDASI-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~~~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+..... ...+||.|++...+.+.. +.+.+.||||
T Consensus 140 D~~~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpG 174 (224)
T d1i1na_ 140 DGRMGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPG 174 (224)
T ss_dssp CGGGCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEE
T ss_pred ecccccchhhhhhhhhhhcchhhcC------HHHHhhcCCC
Confidence 543333 234899999988876542 3567788875
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.36 E-value=8.8e-13 Score=97.51 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=56.7
Q ss_pred cCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEE
Q 030935 66 RYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIIL 144 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi 144 (169)
...+.|++|||+|||||.+++.++++|+ +|+++|++ +.+++.+++|+.. +.+. .++... .+.+||+|+
T Consensus 44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid--~~a~~~ar~N~~~----~~~~---~~D~~~--l~~~fD~Vi 112 (197)
T d1ne2a_ 44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDID--PDAIETAKRNCGG----VNFM---VADVSE--ISGKYDTWI 112 (197)
T ss_dssp HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESC--HHHHHHHHHHCTT----SEEE---ECCGGG--CCCCEEEEE
T ss_pred cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccC--HHHHHHHHHcccc----ccEE---EEehhh--cCCcceEEE
Confidence 3567899999999999999999999987 79999999 5699999998652 2332 333322 346899999
Q ss_pred EcCcC
Q 030935 145 GADVF 149 (169)
Q Consensus 145 ~sd~i 149 (169)
++.++
T Consensus 113 ~NPPf 117 (197)
T d1ne2a_ 113 MNPPF 117 (197)
T ss_dssp ECCCC
T ss_pred eCccc
Confidence 86553
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.5e-14 Score=106.31 Aligned_cols=100 Identities=16% Similarity=0.060 Sum_probs=73.5
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcc-------------------------
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNC------------------------- 121 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~------------------------- 121 (169)
..++++|||||||+|..++.+++.+. +|+++|++ +.+++.++++++.++...
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S--~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFT--DRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESC--HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCC--HHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 34678999999999999988887776 79999999 569999999987554321
Q ss_pred ---eEEEEEcCC-----CCcCCCCCCCcEEEEcCcCCCCC----ChHHHHHHHHHhccCC
Q 030935 122 ---RVMGLTWGF-----LDASIFDLNPNIILGADVFYDAS----GKICAFEILICSLFPI 169 (169)
Q Consensus 122 ---~~~~l~~~~-----~~~~~~~~~fDlIi~sd~iy~~~----~~~~l~~~l~~~L~p~ 169 (169)
.+....... ...+....+||+|++..++++.. ++..+++.+.+.||||
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpG 186 (257)
T d2a14a1 127 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPG 186 (257)
T ss_dssp HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred HhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCC
Confidence 111111111 11223345899999999998663 5678999999999995
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.33 E-value=6.8e-12 Score=98.46 Aligned_cols=98 Identities=20% Similarity=0.083 Sum_probs=75.1
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC-----CCCCCcEEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI-----FDLNPNIIL 144 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~-----~~~~fDlIi 144 (169)
++++||||+||||.+|+.+++.|++|+++|.+ +.+++.+++|++.|++......+..++....+ ...+||+||
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s--~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii 209 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDAS--KKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 209 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSC--HHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeCh--HHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence 68899999999999999999999999999999 56999999999999986533334455543211 245899999
Q ss_pred EcCcCCCC----------CChHHHHHHHHHhccCC
Q 030935 145 GADVFYDA----------SGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~----------~~~~~l~~~l~~~L~p~ 169 (169)
+-.+-|-. ..++.+++.+.++|+|+
T Consensus 210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~ 244 (309)
T d2igta1 210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPK 244 (309)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTT
T ss_pred ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 86665521 22466777788888874
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.32 E-value=2.1e-12 Score=99.32 Aligned_cols=92 Identities=16% Similarity=-0.018 Sum_probs=70.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
+|.+|||+|||+|.+++.+|+.|+ +|+++|++ +.+++.+++|++.|++..++. ...++.........||.|+...+
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n--~~a~~~~~~N~~~n~l~~~v~-~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKD--PYTFKFLVENIHLNKVEDRMS-AYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCC--HHHHHHHHHHHHHTTCTTTEE-EECSCTTTCCCCSCEEEEEECCC
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCC--HHHHHHHHHHHHHhCCCceEE-EEEcchHHhccCCCCCEEEECCC
Confidence 688999999999999999999886 99999999 679999999999999976554 33444444444568999998766
Q ss_pred CCCCCChHHHHHHHHHhccC
Q 030935 149 FYDASGKICAFEILICSLFP 168 (169)
Q Consensus 149 iy~~~~~~~l~~~l~~~L~p 168 (169)
-+... ++....+.|+|
T Consensus 184 ~~~~~----~l~~a~~~l~~ 199 (260)
T d2frna1 184 VRTHE----FIPKALSIAKD 199 (260)
T ss_dssp SSGGG----GHHHHHHHEEE
T ss_pred CchHH----HHHHHHhhcCC
Confidence 55433 44444455555
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=5.9e-12 Score=96.91 Aligned_cols=101 Identities=18% Similarity=0.096 Sum_probs=76.0
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhC--CcceEEEEEcCCCCc-C
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNK--LNCRVMGLTWGFLDA-S 134 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~~~~~~~l~~~~~~~-~ 134 (169)
++....+..+|.+|||+|||+|.+++.+|+. | .+|+.+|++ +++++.|++|++... ...++. +..++..+ .
T Consensus 87 ~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~--~~~~~~Ar~n~~~~~~~~~~nv~-~~~~d~~~~~ 163 (264)
T d1i9ga_ 87 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQR--ADHAEHARRNVSGCYGQPPDNWR-LVVSDLADSE 163 (264)
T ss_dssp HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSC--HHHHHHHHHHHHHHHTSCCTTEE-EECSCGGGCC
T ss_pred HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCC--HHHHHHHHHhhhhhccCCCceEE-EEeccccccc
Confidence 3444455668999999999999999999985 4 389999999 679999999998642 222222 44455433 3
Q ss_pred CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 IFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+.+..||.|+. +..++...++.+.+.|||+
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpG 193 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAG 193 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEE
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCC
Confidence 44569999986 3567788999999999985
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.30 E-value=2.5e-12 Score=101.72 Aligned_cols=117 Identities=13% Similarity=-0.026 Sum_probs=82.4
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.+|+. .....-..++.... .+|++|||+|||+|..|+.+++.|+ +|+++|++ +.+++.+++|++.|++..++.
T Consensus 125 ~tG~f--lDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s--~~al~~a~~N~~~ngl~~~~~ 198 (324)
T d2as0a2 125 KTGFF--LDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKS--PRAIETAKENAKLNGVEDRMK 198 (324)
T ss_dssp SSCCC--STTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCGGGEE
T ss_pred ccCcc--cchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhcCCcEEEeecCC--HHHHHHHHHHHHHcCCCccce
Confidence 34443 34444445554432 3588999999999999999999987 79999999 569999999999999975543
Q ss_pred EEEcCCCCcC-----CCCCCCcEEEEcCcCCCCC---------ChHHHHHHHHHhccCC
Q 030935 125 GLTWGFLDAS-----IFDLNPNIILGADVFYDAS---------GKICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~-----~~~~~fDlIi~sd~iy~~~---------~~~~l~~~l~~~L~p~ 169 (169)
+..++.... ....+||+|++..+.+... .+..+++...+.|+||
T Consensus 199 -~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG 256 (324)
T d2as0a2 199 -FIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG 256 (324)
T ss_dssp -EEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE
T ss_pred -eeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444543221 1345899999744443222 2455777777788875
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.30 E-value=7.1e-12 Score=94.30 Aligned_cols=100 Identities=12% Similarity=0.032 Sum_probs=72.3
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC-
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF- 136 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~- 136 (169)
+..+|++.....+|.+|||+|||+|..+..+++.+.+|+++|.+ +++++.+++|...+ .++. +..++......
T Consensus 58 ~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~--~~~~~~A~~~~~~~-~nv~---~~~~d~~~g~~~ 131 (224)
T d1vbfa_ 58 LGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEIN--EKMYNYASKLLSYY-NNIK---LILGDGTLGYEE 131 (224)
T ss_dssp HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTC-SSEE---EEESCGGGCCGG
T ss_pred hHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhccccccccc--HHHHHHHHHHHhcc-cccc---cccCchhhcchh
Confidence 34456666667789999999999999999999999999999999 56999999887643 2222 33454433332
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
..+||.|++.-.+.+. .+.|.+.|+||
T Consensus 132 ~~pfD~Iiv~~a~~~i------p~~l~~qLk~G 158 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPTL------LCKPYEQLKEG 158 (224)
T ss_dssp GCCEEEEEESSBBSSC------CHHHHHTEEEE
T ss_pred hhhHHHHHhhcchhhh------hHHHHHhcCCC
Confidence 3589999987766433 24456777774
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.30 E-value=7.7e-12 Score=91.23 Aligned_cols=93 Identities=12% Similarity=0.018 Sum_probs=71.6
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC---Cc-CCCCCCCcEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL---DA-SIFDLNPNII 143 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~---~~-~~~~~~fDlI 143 (169)
..+.+||||.||||.+|+.++.+|| +|+++|.+ ..+++.+++|++..+...........+. .. .....+||+|
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~--~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlI 119 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELD--KTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVV 119 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSC--HHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEE
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecc--cchhhhHhhHHhhhcccccccccccccccccccccccCCcccEE
Confidence 4778999999999999999999999 89999999 5699999999998766432121222221 11 1223479999
Q ss_pred EEcCcCCCCCChHHHHHHHHH
Q 030935 144 LGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~ 164 (169)
++ |+-|.....+.++..|..
T Consensus 120 Fl-DPPY~~~~~~~~l~~l~~ 139 (183)
T d2ifta1 120 FL-DPPFHFNLAEQAISLLCE 139 (183)
T ss_dssp EE-CCCSSSCHHHHHHHHHHH
T ss_pred Ee-chhHhhhhHHHHHHHHHH
Confidence 86 999998888999988876
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=1.3e-11 Score=94.22 Aligned_cols=81 Identities=12% Similarity=0.098 Sum_probs=61.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEE--cCC-CCcCC---CCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLT--WGF-LDASI---FDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~--~~~-~~~~~---~~~~fD 141 (169)
+..++||+|||+|.+++.+++. +.+|+++|++ +++++.|++|++.|++..++.... +.. ..... ...+||
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~--~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD 138 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVD--DMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYD 138 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESC--HHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBS
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecC--HHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCcee
Confidence 3458999999999999998875 6799999999 579999999999999876654333 222 11111 234899
Q ss_pred EEEEcCcCCCC
Q 030935 142 IILGADVFYDA 152 (169)
Q Consensus 142 lIi~sd~iy~~ 152 (169)
+|+|+.+.|..
T Consensus 139 ~ivsNPPY~~~ 149 (250)
T d2h00a1 139 FCMCNPPFFAN 149 (250)
T ss_dssp EEEECCCCC--
T ss_pred EEEecCccccc
Confidence 99999999854
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.27 E-value=1.2e-11 Score=95.50 Aligned_cols=95 Identities=20% Similarity=0.220 Sum_probs=70.8
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGF 130 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~ 130 (169)
=|.+..|.+++..........+++|+|||+|.+++.+++.. ++|+++|++ +.+++.|++|++.++...++. +..++
T Consensus 92 RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis--~~Al~~A~~Na~~~~~~~~~~-i~~~~ 168 (271)
T d1nv8a_ 92 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVS--SKAVEIARKNAERHGVSDRFF-VRKGE 168 (271)
T ss_dssp CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESC--HHHHHHHHHHHHHTTCTTSEE-EEESS
T ss_pred hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhh--hhHHHHHHHHHHHcCCCceeE-Eeecc
Confidence 45678888887765433345689999999999999988764 489999999 679999999999999876543 23333
Q ss_pred CCcCC--CCCCCcEEEEcCcC
Q 030935 131 LDASI--FDLNPNIILGADVF 149 (169)
Q Consensus 131 ~~~~~--~~~~fDlIi~sd~i 149 (169)
+.... ...+||+|+|+.+.
T Consensus 169 ~~~~~~~~~~~fDlIVsNPPY 189 (271)
T d1nv8a_ 169 FLEPFKEKFASIEMILSNPPY 189 (271)
T ss_dssp TTGGGGGGTTTCCEEEECCCC
T ss_pred cccccccccCcccEEEEcccc
Confidence 33322 22589999997664
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.26 E-value=2.2e-11 Score=93.10 Aligned_cols=95 Identities=18% Similarity=0.117 Sum_probs=75.2
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++|||||||+|..+..++++. .+++++|+. ++++.++++++..+...++. ..-++...+. +..||+|+++.
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp---~~~~~a~~~~~~~~~~~ri~-~~~~d~~~~~-p~~~D~v~~~~ 155 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA---GPAERARRRFADAGLADRVT-VAEGDFFKPL-PVTADVVLLSF 155 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHHHHHHHHHHTTCTTTEE-EEECCTTSCC-SCCEEEEEEES
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecCh---HHHHHHHHHHhhcCCcceee-eeeeeccccc-cccchhhhccc
Confidence 44689999999999999999874 589999983 59999999999888765544 3334444433 44799999999
Q ss_pred cCCCCCC--hHHHHHHHHHhccCC
Q 030935 148 VFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
++|+..+ ...+++.++++|+|+
T Consensus 156 vLh~~~d~~~~~lL~~i~~~Lkpg 179 (256)
T d1qzza2 156 VLLNWSDEDALTILRGCVRALEPG 179 (256)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred cccccCcHHHHHHHHHHHhhcCCc
Confidence 9997754 457899999999985
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=2.5e-12 Score=101.52 Aligned_cols=99 Identities=16% Similarity=-0.022 Sum_probs=72.5
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCc--CCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDA--SIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~--~~~~~~fDlIi~ 145 (169)
.+|++|||+|||+|..++.+|+.+++|+++|++ +.+++.+++|++.|++. +++...+..+... .....+||+|++
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s--~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~ 221 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFREVVAVDSS--AEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL 221 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESC--HHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCCcEEeecch--HHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence 378999999999999999998877799999999 56999999999999985 3333332222111 112458999998
Q ss_pred cCcCCCCCC---------hHHHHHHHHHhccCC
Q 030935 146 ADVFYDASG---------KICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~---------~~~l~~~l~~~L~p~ 169 (169)
..+.+.... +..+++...+.|+||
T Consensus 222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG 254 (318)
T d1wxxa2 222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG 254 (318)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE
T ss_pred cCCccccchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 666553321 345777778888885
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.24 E-value=1.8e-11 Score=91.48 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=75.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS 134 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~ 134 (169)
..+...|++.....++.+|||+|||||..+..+++. |.+|+++|.+ +++++.+++|++..+... +. +..++....
T Consensus 64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~--~~l~~~a~~~l~~~g~~n-v~-~~~gd~~~g 139 (215)
T d1jg1a_ 64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERI--PELVEFAKRNLERAGVKN-VH-VILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESC--HHHHHHHHHHHHHTTCCS-EE-EEESCGGGC
T ss_pred hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEecc--HHHHHHHHHHHHHcCCce-eE-EEECccccC
Confidence 334445555666778999999999999999999975 6789999999 569999999999888653 22 444554443
Q ss_pred C-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 I-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. ...+||.|+..-.+.... + .|.+.|+||
T Consensus 140 ~~~~~pfD~Iiv~~a~~~ip--~----~l~~qL~~g 169 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGAPKIP--E----PLIEQLKIG 169 (215)
T ss_dssp CGGGCCEEEEEECSBBSSCC--H----HHHHTEEEE
T ss_pred CcccCcceeEEeecccccCC--H----HHHHhcCCC
Confidence 3 345899999988776433 2 355667764
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.22 E-value=3.9e-11 Score=94.51 Aligned_cols=98 Identities=18% Similarity=-0.006 Sum_probs=72.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-----CCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-----IFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-----~~~~~fDlI 143 (169)
+|++|||++||+|.+|+.+++.|+ +|+++|+++. +++.+++|++.|+++..-..+..++.... ....+||+|
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~--a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I 221 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKR--SRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 221 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTT--HHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHH--HHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence 689999999999999999999888 7999999964 99999999999998532122333433211 123589999
Q ss_pred EEcCcCCCC---------CChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDA---------SGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~---------~~~~~l~~~l~~~L~p~ 169 (169)
|+-.+-+.. ..+..+++...+.|+|+
T Consensus 222 i~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg 256 (317)
T d2b78a2 222 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN 256 (317)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE
T ss_pred EEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 986554422 12556888888888875
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.22 E-value=3.4e-11 Score=89.26 Aligned_cols=95 Identities=11% Similarity=-0.193 Sum_probs=72.7
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCC---cCCCCCCCcEEEE
Q 030935 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLD---ASIFDLNPNIILG 145 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~---~~~~~~~fDlIi~ 145 (169)
+..|||||||+|...+.+|+.. ..++++|++ +.++..+.++++.++++. +. +..++.. ..+.+..+|.|+.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~--~~~i~~a~~~~~~~~l~N-v~-~~~~Da~~l~~~~~~~~~d~v~i 105 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELF--KSVIVTAVQKVKDSEAQN-VK-LLNIDADTLTDVFEPGEVKRVYL 105 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSC--HHHHHHHHHHHHHSCCSS-EE-EECCCGGGHHHHCCTTSCCEEEE
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecc--hHHHHHHHHHHHHHhccC-ch-hcccchhhhhcccCchhhhcccc
Confidence 4579999999999999999875 489999999 569999999999888862 22 3333322 2244568998887
Q ss_pred cCcCCCCCCh--------HHHHHHHHHhccCC
Q 030935 146 ADVFYDASGK--------ICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~--------~~l~~~l~~~L~p~ 169 (169)
.-+..++... +.+++.+++.||||
T Consensus 106 ~fp~P~~k~~h~k~Rl~~~~~l~~~~r~Lkpg 137 (204)
T d2fcaa1 106 NFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKG 137 (204)
T ss_dssp ESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTS
T ss_pred ccccccchhhhcchhhhHHHHHHHHHHhCCCC
Confidence 7666655432 68999999999997
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.8e-11 Score=95.63 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=68.1
Q ss_pred HhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCC----------cceEEEEEcC
Q 030935 63 WQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL----------NCRVMGLTWG 129 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~----------~~~~~~l~~~ 129 (169)
....+..+|.+|||+|||+|.+++.+|+. | .+|++.|++ +++++.|++|++..+. ..++ .+..+
T Consensus 91 l~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~--~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv-~~~~~ 167 (324)
T d2b25a1 91 LSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR--KDHHDLAKKNYKHWRDSWKLSHVEEWPDNV-DFIHK 167 (324)
T ss_dssp HHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESS--HHHHHHHHHHHHHHHHHHTTTCSSCCCCCE-EEEES
T ss_pred HHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCC--HHHHHHHHHHHHHhhhhhhhhhhhccccce-eEEec
Confidence 33345668999999999999999999985 4 389999999 5799999999986421 1112 23334
Q ss_pred CCCc---CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 130 FLDA---SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 130 ~~~~---~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+... ...+..||.|+. |+ .+....+..+.+.||||
T Consensus 168 di~~~~~~~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpG 205 (324)
T d2b25a1 168 DISGATEDIKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHG 205 (324)
T ss_dssp CTTCCC-------EEEEEE-CS----SSTTTTHHHHGGGEEEE
T ss_pred chhhcccccCCCCcceEee-cC----cCHHHHHHHHHHhccCC
Confidence 4322 223458999986 44 44556788899999986
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.17 E-value=5.3e-11 Score=89.59 Aligned_cols=118 Identities=12% Similarity=0.038 Sum_probs=81.9
Q ss_pred cceeecchH-HHHHHHHHh---ccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 47 YGLFVWPCS-VILAEYVWQ---QRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 47 ~g~~~W~~~-~~La~~l~~---~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
...+.|..- -.||..++. +....+|.+|||||||+|..+..+|+. | .+|+++|++ +++++.++++++..+.
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s--~~~l~~a~~~a~~~~~ 123 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFS--PRVLRELVPIVEERRN 123 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHSSCTT
T ss_pred eeEEEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCc--HHHHHHHHHHHHhcCC
Confidence 468889762 134444543 345668999999999999999999985 4 489999999 5799999998865543
Q ss_pred cceEEEEEcCCCCc-CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 120 NCRVMGLTWGFLDA-SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ~~~~~~l~~~~~~~-~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. .....+...... ......+|+|++ | +++..+.+.+++.+.+.|+|+
T Consensus 124 ~-~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~Lkpg 171 (227)
T d1g8aa_ 124 I-VPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRG 171 (227)
T ss_dssp E-EEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEE
T ss_pred c-eEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccC
Confidence 2 222222222211 112347888876 4 456677888999999999985
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.16 E-value=3.5e-10 Score=83.66 Aligned_cols=97 Identities=13% Similarity=-0.133 Sum_probs=73.5
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
+..|||||||+|-..+.+|+.. ..++++|++ +.++..+.+++..++++ +.+...+..++...+.+.++|.|+..-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~--~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f 109 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQ--KSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 109 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESC--HHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEecc--HHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence 3479999999999999999874 489999999 56999999999888876 444444444333344556899998665
Q ss_pred cCCCCCC--------hHHHHHHHHHhccCC
Q 030935 148 VFYDASG--------KICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~--------~~~l~~~l~~~L~p~ 169 (169)
+-.++.. .+.+++.+++.|+||
T Consensus 110 PdPw~K~~h~krRl~~~~~l~~~~~~Lkpg 139 (204)
T d1yzha1 110 SDPWPKKRHEKRRLTYKTFLDTFKRILPEN 139 (204)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTT
T ss_pred cccccchhhhhhhhhHHHHHHHHHHhCCCC
Confidence 5544433 378999999999997
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.1e-10 Score=89.62 Aligned_cols=85 Identities=14% Similarity=-0.007 Sum_probs=62.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc-CCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-SIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-~~~~~~fDlIi~ 145 (169)
.++.+|||+|||+|..+..+++.+ .+++++|++ +.|++.++++. .++.+. .++... ++.+..||+|++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s--~~~~~~a~~~~----~~~~~~---~~d~~~l~~~~~sfD~v~~ 153 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVS--KVAIKAAAKRY----PQVTFC---VASSHRLPFSDTSMDAIIR 153 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESC--HHHHHHHHHHC----TTSEEE---ECCTTSCSBCTTCEEEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecch--Hhhhhhhhccc----ccccce---eeehhhccCCCCCEEEEee
Confidence 367799999999999999998874 489999999 56998887643 233333 233322 445669999999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
...+.+ ++.+++.|||+
T Consensus 154 ~~~~~~-------~~e~~rvLkpg 170 (268)
T d1p91a_ 154 IYAPCK-------AEELARVVKPG 170 (268)
T ss_dssp ESCCCC-------HHHHHHHEEEE
T ss_pred cCCHHH-------HHHHHHHhCCC
Confidence 776654 35578888885
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.3e-11 Score=94.56 Aligned_cols=101 Identities=20% Similarity=0.155 Sum_probs=70.5
Q ss_pred CCCCCCeEEEECCCCCHHHHHHH-HhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc-------------------------
Q 030935 67 YRFSGANVVELGAGTSLPGLVAA-KVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN------------------------- 120 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a-~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~------------------------- 120 (169)
...+|.++||+|||+|+.++..+ +.+.+|+++|++ +.|++.++++++.....
T Consensus 51 g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S--~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 128 (263)
T d2g72a1 51 GEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFL--EVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKER 128 (263)
T ss_dssp SCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSC--HHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHH
T ss_pred CCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCC--HHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHH
Confidence 45678899999999998876555 455689999999 56999999876532210
Q ss_pred ---ceE-EEEEcCCCCc------CCCCCCCcEEEEcCcCCCCC----ChHHHHHHHHHhccCC
Q 030935 121 ---CRV-MGLTWGFLDA------SIFDLNPNIILGADVFYDAS----GKICAFEILICSLFPI 169 (169)
Q Consensus 121 ---~~~-~~l~~~~~~~------~~~~~~fDlIi~sd~iy~~~----~~~~l~~~l~~~L~p~ 169 (169)
..+ ..+.|.-... .....+||+|++.-++.+.. ++..+++.+.++||||
T Consensus 129 ~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPG 191 (263)
T d2g72a1 129 QLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPG 191 (263)
T ss_dssp HHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEE
T ss_pred HhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCC
Confidence 111 1222321111 11234799999999987653 5788999999999996
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.11 E-value=1.8e-10 Score=86.40 Aligned_cols=94 Identities=14% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCCCCCeEEEECCCCCHHHHHHHHh----C----CeEEEEcCCCcHHHHHHHHHHHHHhCCc----ceEEEEEcCCCCcC
Q 030935 67 YRFSGANVVELGAGTSLPGLVAAKV----G----SNVTLTDDSNRIEVLKNMRRVCEMNKLN----CRVMGLTWGFLDAS 134 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~~l~~a~~----g----a~V~~~D~~~~~~~l~~~~~n~~~n~~~----~~~~~l~~~~~~~~ 134 (169)
+..++.+|||+|||||..+..+++. | .+|+++|.+ +++++.+++|+...+.. .++. +..++....
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~--~~l~~~a~~~l~~~~~~~~~~~nv~-~~~~d~~~~ 153 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQ--AELVRRSKANLNTDDRSMLDSGQLL-IVEGDGRKG 153 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESC--HHHHHHHHHHHHHHHHHHHHHTSEE-EEESCGGGC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecC--HHHHHHHHHhhhhcchhhcCccEEE-EEecccccc
Confidence 4567889999999999999888875 2 389999999 57999999998654321 1222 333443332
Q ss_pred C-CCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 135 I-FDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 135 ~-~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
. ...+||.|++.-.+.... +.|.+.|+||
T Consensus 154 ~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~g 183 (223)
T d1r18a_ 154 YPPNAPYNAIHVGAAAPDTP------TELINQLASG 183 (223)
T ss_dssp CGGGCSEEEEEECSCBSSCC------HHHHHTEEEE
T ss_pred cccccceeeEEEEeechhch------HHHHHhcCCC
Confidence 2 234899999988775433 3466777764
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.9e-10 Score=89.71 Aligned_cols=110 Identities=11% Similarity=-0.035 Sum_probs=76.3
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHh-------CCcceEEEEE
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMN-------KLNCRVMGLT 127 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n-------~~~~~~~~l~ 127 (169)
.+...+.+.....++.+|||||||+|.+.+.+|+. ++ +++++|++ +.+++.++++.+.. +....-..+.
T Consensus 138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s--~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKA--DIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECS--HHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCC--HHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 34444555556667889999999999999988875 44 79999999 56998888776543 2222223355
Q ss_pred cCCCCcCCC-CC--CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 128 WGFLDASIF-DL--NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 128 ~~~~~~~~~-~~--~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.++...... +. ..|+|+++... +..++...++.+.+.||||
T Consensus 216 ~gd~~~~~~~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpG 259 (328)
T d1nw3a_ 216 RGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEG 259 (328)
T ss_dssp ECCTTSHHHHHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTT
T ss_pred ECcccccccccccCcceEEEEccee-cchHHHHHHHHHHHhCCCC
Confidence 666543211 11 35888886554 5567778888999999997
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.05 E-value=4.7e-10 Score=90.82 Aligned_cols=117 Identities=15% Similarity=-0.020 Sum_probs=78.3
Q ss_pred CcceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-CC-eEEEEcCCCcHHHHHHHHHHHHHhCC----
Q 030935 46 EYGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-GS-NVTLTDDSNRIEVLKNMRRVCEMNKL---- 119 (169)
Q Consensus 46 ~~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-ga-~V~~~D~~~~~~~l~~~~~n~~~n~~---- 119 (169)
.||=..|+- ...+.+.....+|.++||||||+|.+.+.+|+. |. +|+++|++ +.+++.|+++++..+.
T Consensus 196 vYGEl~~~~----i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS--~~~i~~Ak~~~~e~~~~~~~ 269 (406)
T d1u2za_ 196 VYGELLPNF----LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIM--DDASDLTILQYEELKKRCKL 269 (406)
T ss_dssp CCCCBCHHH----HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECC--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHH----HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCC--HHHHHHHHHHHHHHhhhhhh
Confidence 345444443 334445556678899999999999999988764 54 89999999 5699999998875432
Q ss_pred ---cceEEEEEc-CCCCc-CCCC---CCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 120 ---NCRVMGLTW-GFLDA-SIFD---LNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 120 ---~~~~~~l~~-~~~~~-~~~~---~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
......+.. ++... .... ..+|+|+.+.. .+...+...++.+.+.||||
T Consensus 270 ~g~~~~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~-~f~~~l~~~L~ei~r~LKPG 326 (406)
T d1u2za_ 270 YGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNF-LFDEDLNKKVEKILQTAKVG 326 (406)
T ss_dssp TTBCCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCT-TCCHHHHHHHHHHHTTCCTT
T ss_pred hccccccceeeeeechhhccccccccccceEEEEecc-cCchHHHHHHHHHHHhcCCC
Confidence 111122222 22211 1111 25789987654 45677888999999999997
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=4.5e-09 Score=83.22 Aligned_cols=106 Identities=11% Similarity=0.006 Sum_probs=75.1
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
-..+..|.+.+.+.....++.+||||-||+|.+|+.+|+.+++|+++|.+ +.+++.|++|++.|++... . +..++.
T Consensus 194 ~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~--~~ai~~A~~na~~n~i~n~-~-~~~~~~ 269 (358)
T d1uwva2 194 AGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGV--PALVEKGQQNARLNGLQNV-T-FYHENL 269 (358)
T ss_dssp HHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESC--HHHHHHHHHHHHHTTCCSE-E-EEECCT
T ss_pred hhhhhHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCc--HHHHHHHHHhHHhcccccc-e-eeecch
Confidence 34567777777766666677899999999999999999999999999999 5699999999999998642 1 222332
Q ss_pred CcCC-----CCCCCcEEEEcCcCCCCCChHHHHHHHHH
Q 030935 132 DASI-----FDLNPNIILGADVFYDASGKICAFEILIC 164 (169)
Q Consensus 132 ~~~~-----~~~~fDlIi~sd~iy~~~~~~~l~~~l~~ 164 (169)
.... ...+||+||. |+--.- ....++.|.+
T Consensus 270 ~~~~~~~~~~~~~~d~vil-DPPR~G--~~~~~~~l~~ 304 (358)
T d1uwva2 270 EEDVTKQPWAKNGFDKVLL-DPARAG--AAGVMQQIIK 304 (358)
T ss_dssp TSCCSSSGGGTTCCSEEEE-CCCTTC--CHHHHHHHHH
T ss_pred hhhhhhhhhhhccCceEEe-CCCCcc--HHHHHHHHHH
Confidence 2211 1347899986 444322 2334555443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=3.1e-09 Score=79.31 Aligned_cols=105 Identities=13% Similarity=0.022 Sum_probs=78.0
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA-- 133 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~-- 133 (169)
++++.......+.++|||+|||+|..++.+|+. +.+|+.+|.++ +..+.+++|++..+...++. +..|+..+
T Consensus 48 g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~--~~~~~A~~~~~~ag~~~~i~-~~~Gda~e~l 124 (219)
T d2avda1 48 AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDA--QPPELGRPLWRQAEAEHKID-LRLKPALETL 124 (219)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCS--HHHHHHHHHHHHTTCTTTEE-EEESCHHHHH
T ss_pred HHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeech--hHHHHHHHHHHhcCccceEE-EEEeehhhcc
Confidence 444433333346689999999999999999874 45999999995 59999999999998876544 44554322
Q ss_pred -----CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 134 -----SIFDLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 134 -----~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.....+||+|+. | .+...+...++.+...|+||
T Consensus 125 ~~~~~~~~~~~fD~ifi-D--~dk~~y~~~~~~~~~lL~~G 162 (219)
T d2avda1 125 DELLAAGEAGTFDVAVV-D--ADKENCSAYYERCLQLLRPG 162 (219)
T ss_dssp HHHHHTTCTTCEEEEEE-C--SCSTTHHHHHHHHHHHEEEE
T ss_pred hhhhhhcccCCccEEEE-e--CCHHHHHHHHHHHHHHhcCC
Confidence 112458999997 4 35577888888899999885
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.78 E-value=4.3e-09 Score=78.18 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=70.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL 131 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~ 131 (169)
+.+|...+... +.++|||+|||+|..++.+|+. +.+|+.+|.+ +++++.+++|++..++..++. +.-|+.
T Consensus 45 G~lL~~lv~~~----kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~--~~~~~~a~~~~~~~gl~~~i~-l~~Gd~ 117 (214)
T d2cl5a1 45 GQIMDAVIREY----SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMN--PDYAAITQQMLNFAGLQDKVT-ILNGAS 117 (214)
T ss_dssp HHHHHHHHHHH----CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC--HHHHHHHHHHHHHHTCGGGEE-EEESCH
T ss_pred HHHHHHHHHhh----CCCEEEEEccCchhHHHHHHHhCCCccEEEEEecc--HHHHHHHHHHHHHcCCCccce-eeeccc
Confidence 34444444433 4579999999999999999874 5699999999 579999999999999875544 444443
Q ss_pred CcC-------CCCCCCcEEEEcCcCCCCCChHHH--HHHHHHhccCC
Q 030935 132 DAS-------IFDLNPNIILGADVFYDASGKICA--FEILICSLFPI 169 (169)
Q Consensus 132 ~~~-------~~~~~fDlIi~sd~iy~~~~~~~l--~~~l~~~L~p~ 169 (169)
.+. ....+||+|+. | ++....... +....+.|+||
T Consensus 118 ~e~l~~l~~~~~~~~~D~ifi-D--~~~~~~~~~~~l~~~~~lLkpG 161 (214)
T d2cl5a1 118 QDLIPQLKKKYDVDTLDMVFL-D--HWKDRYLPDTLLLEKCGLLRKG 161 (214)
T ss_dssp HHHGGGHHHHSCCCCEEEEEE-C--SCGGGHHHHHHHHHHTTCEEEE
T ss_pred cccccchhhcccccccceeee-c--ccccccccHHHHHHHhCccCCC
Confidence 221 11247899986 4 233333332 33344567774
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.68 E-value=6.1e-08 Score=72.80 Aligned_cols=91 Identities=14% Similarity=0.029 Sum_probs=61.6
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.+.....++.+|||+|||+|.++..+++.+++|+++|++ +++++.++++...+ .++. +..++......+
T Consensus 9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D--~~l~~~l~~~~~~~-~n~~---i~~~D~l~~~~~ 82 (235)
T d1qama_ 9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEID--HKLCKTTENKLVDH-DNFQ---VLNKDILQFKFP 82 (235)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSC--HHHHHHHHHHTTTC-CSEE---EECCCGGGCCCC
T ss_pred HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeec--cchHHHHHHHhhcc-cchh---hhhhhhhhcccc
Confidence 34556666666688999999999999999999999999999999 56998888765432 2233 444554432222
Q ss_pred CCCcEEEEcCcCCCCCC
Q 030935 138 LNPNIILGADVFYDASG 154 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~~ 154 (169)
....+.+.+.+-|+.+.
T Consensus 83 ~~~~~~vv~NLPYnIss 99 (235)
T d1qama_ 83 KNQSYKIFGNIPYNIST 99 (235)
T ss_dssp SSCCCEEEEECCGGGHH
T ss_pred ccccceeeeeehhhhhH
Confidence 22233344577776643
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.68 E-value=3.8e-08 Score=73.62 Aligned_cols=94 Identities=16% Similarity=0.061 Sum_probs=74.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC---C-----CCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS---I-----FDL 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~---~-----~~~ 138 (169)
+.++|||+|+++|..++++|+. +++|+.+|.++ +..+.+++|++..+...++. +..|+..+. . ...
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~--~~~~~A~~~~~~~g~~~~i~-~~~g~a~~~L~~l~~~~~~~~ 135 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINK--ENYELGLPVIKKAGVDHKID-FREGPALPVLDEMIKDEKNHG 135 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCC--HHHHHHHHHHHHTTCGGGEE-EEESCHHHHHHHHHHCGGGTT
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccc--hhHHHHHHHHHHhcccccee-eeehHHHHHHHHHHhccccCC
Confidence 5689999999999999999874 45999999996 59999999999999875544 444443221 1 234
Q ss_pred CCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+||+|+. |. +...+...++.+...|+||
T Consensus 136 ~fD~iFi-Da--~k~~y~~~~e~~~~ll~~g 163 (227)
T d1susa1 136 SYDFIFV-DA--DKDNYLNYHKRLIDLVKVG 163 (227)
T ss_dssp CBSEEEE-CS--CSTTHHHHHHHHHHHBCTT
T ss_pred ceeEEEe-cc--chhhhHHHHHHHHhhcCCC
Confidence 8999997 64 5577899999999999986
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.57 E-value=2.1e-07 Score=68.58 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=64.3
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCc-ceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLN-CRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~-~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
+++++++|+|||.|++|+.+|-.. .+|+++|.+. .=+..+++-+..-++. +.+. .+..++.....+||+|+|
T Consensus 64 ~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~--KK~~FL~~~~~~L~L~nv~v~---~~R~E~~~~~~~fD~V~s 138 (207)
T d1jsxa_ 64 LQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLG--KRVRFLRQVQHELKLENIEPV---QSRVEEFPSEPPFDGVIS 138 (207)
T ss_dssp CCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCH--HHHHHHHHHHHHTTCSSEEEE---ECCTTTSCCCSCEEEEEC
T ss_pred hcCCceeeeeccCCceeeehhhhcccceEEEEecch--HHHHHHHHHHHHcCCcceeee---ccchhhhccccccceehh
Confidence 356799999999999999999864 4899999994 4666666666666664 3322 333333333458999998
Q ss_pred cCcCCCCCChHHHHHHHHHhccC
Q 030935 146 ADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
--+ ..++.+++.....++|
T Consensus 139 RA~----~~~~~ll~~~~~~l~~ 157 (207)
T d1jsxa_ 139 RAF----ASLNDMVSWCHHLPGE 157 (207)
T ss_dssp SCS----SSHHHHHHHHTTSEEE
T ss_pred hhh----cCHHHHHHHHHHhcCC
Confidence 554 4578888888777765
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.56 E-value=1.6e-07 Score=73.21 Aligned_cols=89 Identities=8% Similarity=-0.005 Sum_probs=63.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh----C---CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV----G---SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~----g---a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
..|++.+.......++.+|||.|||+|.+.+.+... + .+++++|++ +.+++.|+.|...++.......
T Consensus 103 ~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~--~~~~~~a~~~~~~~~~~~~~~~--- 177 (328)
T d2f8la1 103 FIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVD--DLLISLALVGADLQRQKMTLLH--- 177 (328)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESC--HHHHHHHHHHHHHHTCCCEEEE---
T ss_pred HHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEeccc--HHHHHHHHHHHHHhhhhhhhhc---
Confidence 345555544333445678999999999998877642 2 269999999 5699999999998887765432
Q ss_pred CCCCcCCCCCCCcEEEEcCcC
Q 030935 129 GFLDASIFDLNPNIILGADVF 149 (169)
Q Consensus 129 ~~~~~~~~~~~fDlIi~sd~i 149 (169)
++........+||+|+++.++
T Consensus 178 ~d~~~~~~~~~fD~vi~NPPy 198 (328)
T d2f8la1 178 QDGLANLLVDPVDVVISDLPV 198 (328)
T ss_dssp SCTTSCCCCCCEEEEEEECCC
T ss_pred cccccccccccccccccCCCC
Confidence 333233345699999998875
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=8.4e-07 Score=68.00 Aligned_cols=90 Identities=9% Similarity=0.072 Sum_probs=62.0
Q ss_pred HHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC
Q 030935 58 LAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD 137 (169)
Q Consensus 58 La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~ 137 (169)
+++.+.......++..|||+|+|+|.++..+++.+++|++++++ +.+++.+++....+....++. +..++......
T Consensus 9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D--~~l~~~L~~~~~~~~~~~~~~-~i~~D~l~~~~- 84 (278)
T d1zq9a1 9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD--PRLVAELHKRVQGTPVASKLQ-VLVGDVLKTDL- 84 (278)
T ss_dssp HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC--HHHHHHHHHHHTTSTTGGGEE-EEESCTTTSCC-
T ss_pred HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc--cchhHHHHHHHhhhccccchh-hhHHHHhhhhh-
Confidence 34445555555578899999999999999999999999999999 569999998876654433333 23334332211
Q ss_pred CCCcEEEEcCcCCCC
Q 030935 138 LNPNIILGADVFYDA 152 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~ 152 (169)
..+..||++ +-|+.
T Consensus 85 ~~~~~vV~N-LPY~I 98 (278)
T d1zq9a1 85 PFFDTCVAN-LPYQI 98 (278)
T ss_dssp CCCSEEEEE-CCGGG
T ss_pred hhhhhhhcc-hHHHH
Confidence 245677765 44544
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.38 E-value=2.4e-08 Score=75.51 Aligned_cols=88 Identities=19% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC-C
Q 030935 60 EYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD-L 138 (169)
Q Consensus 60 ~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~-~ 138 (169)
+.+.+.....++.+|||+|||+|.++..+++.+++|+++|+++. +++.++++.... ..+ .+..++......+ .
T Consensus 19 ~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~--l~~~l~~~~~~~---~n~-~ii~~D~l~~~~~~~ 92 (245)
T d1yuba_ 19 NQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSH--LFNLSSEKLKLN---TRV-TLIHQDILQFQFPNK 92 (245)
T ss_dssp HHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCS--SSSSSSCTTTTC---SEE-EECCSCCTTTTCCCS
T ss_pred HHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeeccc--chhhhhhhhhhc---cch-hhhhhhhhccccccc
Confidence 34444445557789999999999999999999999999999975 777665544321 122 2444554332222 3
Q ss_pred CCcEEEEcCcCCCCCC
Q 030935 139 NPNIILGADVFYDASG 154 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~ 154 (169)
.++.|+ +.+-|+.+.
T Consensus 93 ~~~~vv-~NLPY~Ist 107 (245)
T d1yuba_ 93 QRYKIV-GNIPYHLST 107 (245)
T ss_dssp SEEEEE-EECCSSSCH
T ss_pred eeeeEe-eeeehhhhH
Confidence 444555 556676653
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.32 E-value=9.2e-07 Score=64.10 Aligned_cols=97 Identities=18% Similarity=0.010 Sum_probs=59.7
Q ss_pred CCeEEEECCCCCHH----HHHHHHh----CC--eEEEEcCCCcHHHHHHHHHHHHHh----CC----------------c
Q 030935 71 GANVVELGAGTSLP----GLVAAKV----GS--NVTLTDDSNRIEVLKNMRRVCEMN----KL----------------N 120 (169)
Q Consensus 71 ~~~vLElGcGtGl~----~l~~a~~----ga--~V~~~D~~~~~~~l~~~~~n~~~n----~~----------------~ 120 (169)
..+||..|||||-- ++.+... +. +|++||++ +.+++.|+...-.. +. .
T Consensus 25 ~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~--~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~ 102 (193)
T d1af7a2 25 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDID--TEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE 102 (193)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESC--HHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred CeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCC--hHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence 45899999999963 3333332 11 79999999 56898887533100 00 0
Q ss_pred ceE---------EEEEcCCCCc--CCCCCCCcEEEEcCcCCCC--CChHHHHHHHHHhccCC
Q 030935 121 CRV---------MGLTWGFLDA--SIFDLNPNIILGADVFYDA--SGKICAFEILICSLFPI 169 (169)
Q Consensus 121 ~~~---------~~l~~~~~~~--~~~~~~fDlIi~sd~iy~~--~~~~~l~~~l~~~L~p~ 169 (169)
... ......+... .....+||+|+|..|+.+. +....+++.++++|+||
T Consensus 103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pG 164 (193)
T d1af7a2 103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPD 164 (193)
T ss_dssp SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEE
T ss_pred ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCC
Confidence 000 0111122111 1223589999999988544 44478999999999996
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.31 E-value=1.2e-06 Score=65.79 Aligned_cols=87 Identities=16% Similarity=0.016 Sum_probs=62.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGAD 147 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd 147 (169)
..++|||||||+|..++.+++... ++++.|+. .+++. .....++. ..-+++.++.+ ..|+++.+.
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~-------~~~~~ri~-~~~gd~~~~~p--~~D~~~l~~ 147 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLP---QVIEN-------APPLSGIE-HVGGDMFASVP--QGDAMILKA 147 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTT-------CCCCTTEE-EEECCTTTCCC--CEEEEEEES
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch---hhhhc-------cCCCCCeE-EecCCcccccc--cceEEEEeh
Confidence 346899999999999999998754 88999984 45432 22222222 33455544433 459999999
Q ss_pred cCCCCCC--hHHHHHHHHHhccCC
Q 030935 148 VFYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 148 ~iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
++|+..+ ...+++.+.++|+|+
T Consensus 148 vLh~~~de~~~~iL~~~~~aL~pg 171 (244)
T d1fp1d2 148 VCHNWSDEKCIEFLSNCHKALSPN 171 (244)
T ss_dssp SGGGSCHHHHHHHHHHHHHHEEEE
T ss_pred hhhhCCHHHHHHHHHHHHHHcCCC
Confidence 9997755 457899999999985
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=5.4e-07 Score=65.49 Aligned_cols=85 Identities=12% Similarity=-0.026 Sum_probs=60.2
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--- 133 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--- 133 (169)
.+-+.......++..+||.+||+|..+..+++. +.+|+++|.+ ++|++.++++++..+....+....+.+...
T Consensus 12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d--~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~ 89 (192)
T d1m6ya2 12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVD--SEVLRIAEEKLKEFSDRVSLFKVSYREADFLLK 89 (192)
T ss_dssp HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESC--HHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHH
T ss_pred HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeech--HHHHHHHHHhhccccccccchhHHHhhHHHHHH
Confidence 333444444567889999999999999888875 4599999999 679999999998776655554443333211
Q ss_pred CCCCCCCcEEEE
Q 030935 134 SIFDLNPNIILG 145 (169)
Q Consensus 134 ~~~~~~fDlIi~ 145 (169)
.....+||.|+.
T Consensus 90 ~~~~~~vdgIl~ 101 (192)
T d1m6ya2 90 TLGIEKVDGILM 101 (192)
T ss_dssp HTTCSCEEEEEE
T ss_pred HcCCCCcceeee
Confidence 122358898884
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.24 E-value=1.3e-06 Score=65.64 Aligned_cols=86 Identities=15% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++|||+|||+|..++.++++. .++++.|+. .+++.+ +...++. +.-+++..+. ..+|+++.+.+
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp---~vi~~~-------~~~~rv~-~~~gD~f~~~--p~aD~~~l~~v 147 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP---QVVENL-------SGSNNLT-YVGGDMFTSI--PNADAVLLKYI 147 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH---HHHTTC-------CCBTTEE-EEECCTTTCC--CCCSEEEEESC
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH---HHHHhC-------cccCceE-EEecCcccCC--CCCcEEEEEee
Confidence 3589999999999999998874 489999984 455432 2222322 3445554443 26899999999
Q ss_pred CCCCCCh--HHHHHHHHHhccCC
Q 030935 149 FYDASGK--ICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~~--~~l~~~l~~~L~p~ 169 (169)
+|+..+- ..+++.++++|+|+
T Consensus 148 LHdw~d~~~~~iL~~~~~al~pg 170 (244)
T d1fp2a2 148 LHNWTDKDCLRILKKCKEAVTND 170 (244)
T ss_dssp GGGSCHHHHHHHHHHHHHHHSGG
T ss_pred cccCChHHHHHHHHHHHHHcCcc
Confidence 9977655 46899999999984
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.16 E-value=2e-06 Score=68.47 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=62.9
Q ss_pred CCCeEEEECCCCCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcce-------------EEEEEcCCCCcC
Q 030935 70 SGANVVELGAGTSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCR-------------VMGLTWGFLDAS 134 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~-------------~~~l~~~~~~~~ 134 (169)
++++|||..||||+-|+-.++ .|+ +|++.|++ +.+++.+++|++.|+.... .......+....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis--~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~ 122 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDIS--EDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL 122 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESC--HHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCC--HHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh
Confidence 578999999999999996655 566 89999999 5799999999999986421 111222221111
Q ss_pred --CCCCCCcEEEEcCcCCCCCChHHHHHHHHHhcc
Q 030935 135 --IFDLNPNIILGADVFYDASGKICAFEILICSLF 167 (169)
Q Consensus 135 --~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~ 167 (169)
.....||+|.. |+ | ....+++....++++
T Consensus 123 ~~~~~~~fDvIDi-DP-f--Gs~~pfldsAi~a~~ 153 (375)
T d2dula1 123 MAERHRYFHFIDL-DP-F--GSPMEFLDTALRSAK 153 (375)
T ss_dssp HHHSTTCEEEEEE-CC-S--SCCHHHHHHHHHHEE
T ss_pred hHhhcCcCCcccC-CC-C--CCcHHHHHHHHHHhc
Confidence 12347999986 66 2 344556666665554
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.13 E-value=4.3e-06 Score=67.35 Aligned_cols=119 Identities=13% Similarity=-0.013 Sum_probs=81.4
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC---------------CeEEEEcCCCcHHHHHHHH
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG---------------SNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g---------------a~V~~~D~~~~~~~l~~~~ 111 (169)
.|-..=| ..++++|........+.+|+|-.||+|.+-+.+.++- ..+.+.|++ +.+...++
T Consensus 141 ~G~f~TP--~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~--~~~~~la~ 216 (425)
T d2okca1 141 AGQYFTP--RPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNT--PLVVTLAS 216 (425)
T ss_dssp CGGGCCC--HHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESC--HHHHHHHH
T ss_pred chhhccc--hhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhcc--HHHHHHHH
Confidence 3444434 3467788776655677899999999999988776631 248999999 56999999
Q ss_pred HHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCC-----------------ChHHHHHHHHHhccCC
Q 030935 112 RVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDAS-----------------GKICAFEILICSLFPI 169 (169)
Q Consensus 112 ~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~-----------------~~~~l~~~l~~~L~p~ 169 (169)
.|...++.......+..++........+||+|+++.++-... ..-.+++.+...|+|+
T Consensus 217 ~n~~l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~ 291 (425)
T d2okca1 217 MNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTG 291 (425)
T ss_dssp HHHHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEE
T ss_pred hhhhhcCCccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCC
Confidence 999988875332234445544444456899999988772110 1134777777777763
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.11 E-value=1.7e-06 Score=67.36 Aligned_cols=97 Identities=13% Similarity=0.072 Sum_probs=65.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHH-hCC---cceEEEEEcCCCCcC--CCCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEM-NKL---NCRVMGLTWGFLDAS--IFDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~-n~~---~~~~~~l~~~~~~~~--~~~~~fD 141 (169)
..++||.||.|.|.....+++.. .+|+++|++ +++++.+++.+.. ++. +.++ .+..++.... ..+.+||
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD--~~Vi~~a~~~f~~~~~~~~~d~rv-~i~~~Da~~~l~~~~~~yD 153 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDID--GELVEVAKRHMPEWHQGAFDDPRA-VLVIDDARAYLERTEERYD 153 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESC--HHHHHHHHHHCHHHHTTGGGCTTE-EEEESCHHHHHHHCCCCEE
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCC--HHHHHHHHhcCcccccCccCCCce-EEEEchHHHHhhhcCCccc
Confidence 45799999999999998887753 489999999 6799999987643 221 1122 2444443321 1345899
Q ss_pred EEEE--cCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 142 IILG--ADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~--sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
+|+. +|....... -..+++.+++.|+|+
T Consensus 154 vIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~ 188 (312)
T d1uira_ 154 VVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG 188 (312)
T ss_dssp EEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE
T ss_pred EEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC
Confidence 9993 343332221 257999999999985
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.09 E-value=2e-06 Score=65.74 Aligned_cols=96 Identities=13% Similarity=0.052 Sum_probs=64.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhC---------CcceEEEEEcCCCCcCC-CCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNK---------LNCRVMGLTWGFLDASI-FDL 138 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~---------~~~~~~~l~~~~~~~~~-~~~ 138 (169)
+.++||-||+|.|.....+++... +|+++|++ +++++.+++-...++ ...++. +..++..... ...
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD--~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~-i~~~Da~~~l~~~~ 148 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEID--EDVIMVSKDLIKIDNGLLEAMLNGKHEKAK-LTIGDGFEFIKNNR 148 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESC--HHHHHHHHHHTCTTTTHHHHHHTTCCSSEE-EEESCHHHHHHHCC
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCC--HHHHHHHHHhhhhccchhhhhhccCCCCce-EEEChHHHHHhccC
Confidence 457999999999999888877654 89999999 679999987553322 122222 3334322111 135
Q ss_pred CCcEEEEcCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 139 NPNIILGADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 139 ~fDlIi~sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
+||+||. |+...... -.++++.+++.|+|+
T Consensus 149 ~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~ 183 (276)
T d1mjfa_ 149 GFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNP 183 (276)
T ss_dssp CEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEE
T ss_pred CCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCC
Confidence 8999995 65442222 257899999999884
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.9e-06 Score=65.14 Aligned_cols=54 Identities=11% Similarity=0.101 Sum_probs=43.6
Q ss_pred HHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC 114 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~ 114 (169)
++.+.......++..|||+|||+|.++..+++.+.+|+++|++ +++++.+++..
T Consensus 10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD--~~l~~~L~~~~ 63 (252)
T d1qyra_ 10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELD--RDLAARLQTHP 63 (252)
T ss_dssp HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCC--HHHHHHHHTCT
T ss_pred HHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEec--cchhHHHHHHh
Confidence 3344444445578899999999999999999999999999999 56888887643
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.07 E-value=2.5e-05 Score=58.20 Aligned_cols=86 Identities=15% Similarity=-0.048 Sum_probs=60.0
Q ss_pred CCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCc
Q 030935 71 GANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADV 148 (169)
Q Consensus 71 ~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~ 148 (169)
.++|||||||+|..++.+++.. .++++.|+.+ .++.+ ....++. ..-+++..+.+ ..|+++.+-+
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~---vi~~~-------~~~~r~~-~~~~d~~~~~P--~ad~~~l~~v 148 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH---VIEDA-------PSYPGVE-HVGGDMFVSIP--KADAVFMKWI 148 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT---TTTTC-------CCCTTEE-EEECCTTTCCC--CCSCEECSSS
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH---hhhhc-------ccCCceE-EecccccccCC--CcceEEEEEE
Confidence 4689999999999999999874 4899999974 43322 1222222 33455444433 3577777888
Q ss_pred CCCCCC--hHHHHHHHHHhccCC
Q 030935 149 FYDASG--KICAFEILICSLFPI 169 (169)
Q Consensus 149 iy~~~~--~~~l~~~l~~~L~p~ 169 (169)
+|+..+ ...+++.+.++|+|+
T Consensus 149 lh~~~d~~~~~iL~~~~~al~pg 171 (243)
T d1kyza2 149 CHDWSDEHCLKFLKNCYEALPDN 171 (243)
T ss_dssp STTSCHHHHHHHHHHHHHHCCSS
T ss_pred eecCCHHHHHHHHHHHHHhcCCC
Confidence 886644 567999999999986
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.01 E-value=2.9e-06 Score=61.70 Aligned_cols=80 Identities=10% Similarity=-0.039 Sum_probs=53.0
Q ss_pred HHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc
Q 030935 57 ILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA 133 (169)
Q Consensus 57 ~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~ 133 (169)
.++++|.......++.+|||.|||+|.+...+.+. . .++.++|+++. ++..++. .. ...++...
T Consensus 6 ~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~--~~~~~~~--------~~---~~~~~~~~ 72 (223)
T d2ih2a1 6 EVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPK--ALDLPPW--------AE---GILADFLL 72 (223)
T ss_dssp HHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTT--TCCCCTT--------EE---EEESCGGG
T ss_pred HHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHH--HHhhccc--------ce---eeeeehhc
Confidence 46788887766678889999999999887766543 2 47999999964 3322111 11 22333333
Q ss_pred CCCCCCCcEEEEcCcC
Q 030935 134 SIFDLNPNIILGADVF 149 (169)
Q Consensus 134 ~~~~~~fDlIi~sd~i 149 (169)
.....+||+|+++.+.
T Consensus 73 ~~~~~~fd~ii~npP~ 88 (223)
T d2ih2a1 73 WEPGEAFDLILGNPPY 88 (223)
T ss_dssp CCCSSCEEEEEECCCC
T ss_pred cccccccceecccCcc
Confidence 3344589999987664
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.01 E-value=1.1e-05 Score=60.27 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHh--CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc----CCCCCCCcEE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV--GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA----SIFDLNPNII 143 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~--ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~----~~~~~~fDlI 143 (169)
.+.+++|+|+|.|++|+.+|-. ..+|+++|.+. .=+...+.-+..-+++.. . ..++..+. .....+||+|
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~--KK~~FL~~v~~~L~L~n~-~-i~~~R~E~~~~~~~~~~~~D~v 145 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLN--KRITFLEKLSEALQLENT-T-FCHDRAETFGQRKDVRESYDIV 145 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCH--HHHHHHHHHHHHHTCSSE-E-EEESCHHHHTTCTTTTTCEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchH--HHHHHHHHHHHHhCCCCc-E-EEeehhhhccccccccccceEE
Confidence 4678999999999999999875 34899999994 344444444444454421 1 12222211 1123589999
Q ss_pred EEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 144 LGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+|-- ...++.+++.....++|+
T Consensus 146 ~sRA----va~l~~ll~~~~~~l~~~ 167 (239)
T d1xdza_ 146 TARA----VARLSVLSELCLPLVKKN 167 (239)
T ss_dssp EEEC----CSCHHHHHHHHGGGEEEE
T ss_pred EEhh----hhCHHHHHHHHhhhcccC
Confidence 9963 456888888888887763
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.72 E-value=2.9e-05 Score=58.32 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=56.7
Q ss_pred CeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC--c-----ceEEEEEcCCCCcCC--CCCCCcE
Q 030935 72 ANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--N-----CRVMGLTWGFLDASI--FDLNPNI 142 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~--~-----~~~~~l~~~~~~~~~--~~~~fDl 142 (169)
.+|||+-||.|.-++.+|..|++|+++|.+ +.+...++++++.... . ..-..+.+++..+.. ...+||+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~--p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERN--PVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECC--HHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccC--HHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 389999999999999999999999999999 4576677766644321 0 112335555532211 2347999
Q ss_pred EEEcCcCCCCCCh
Q 030935 143 ILGADVFYDASGK 155 (169)
Q Consensus 143 Ii~sd~iy~~~~~ 155 (169)
|.. |+.|....-
T Consensus 168 IYl-DPMFp~~~K 179 (250)
T d2oyra1 168 VYL-DPMFPHKQK 179 (250)
T ss_dssp EEE-CCCCCCCCC
T ss_pred EEE-CCCCccccc
Confidence 996 999965443
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.71 E-value=2.2e-05 Score=60.33 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=63.7
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--C-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--L-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||-||.|.|.+...+++.. .+|+++|++ +++++.+++-...+. . +.++ .+..++.... ..+.+||+
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEID--p~Vi~~a~~~~~~~~~~~~d~rv-~v~~~Da~~~l~~~~~~yDv 165 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVD--GLVIEAARKYLKQTSCGFDDPRA-EIVIANGAEYVRKFKNEFDV 165 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTE-EEEESCHHHHGGGCSSCEEE
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCC--HHHHHHHHHHHHhhcccccCCCc-EEEhhhHHHHHhcCCCCCCE
Confidence 35799999999999988888754 489999999 679999988665432 1 1122 2333432221 12458999
Q ss_pred EEEcCcCC---CCC---ChHHHHHHHHHhccCC
Q 030935 143 ILGADVFY---DAS---GKICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy---~~~---~~~~l~~~l~~~L~p~ 169 (169)
||. |+.- ... .-.++++.+++.|+|+
T Consensus 166 Ii~-D~~dp~~~~~~~L~t~efy~~~~~~L~~~ 197 (295)
T d1inla_ 166 III-DSTDPTAGQGGHLFTEEFYQACYDALKED 197 (295)
T ss_dssp EEE-EC----------CCSHHHHHHHHHHEEEE
T ss_pred EEE-cCCCCCcCchhhhccHHHHHHHHhhcCCC
Confidence 995 4332 111 1478999999999884
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.69 E-value=2.8e-05 Score=59.61 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=64.9
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--C-cceEEEEEcCCCCc---CCCCCCCc
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--L-NCRVMGLTWGFLDA---SIFDLNPN 141 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~-~~~~~~l~~~~~~~---~~~~~~fD 141 (169)
+.++||-||-|.|.....+.+.. .+|+++|++ +++++.+++-...+. . +.++. +..++... ...+.+||
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD--~~Vi~~~~~~f~~~~~~~~~~r~~-i~~~Da~~~l~~~~~~~yD 156 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEID--KMVVDVSKQFFPDVAIGYEDPRVN-LVIGDGVAFLKNAAEGSYD 156 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGSTTEE-EEESCHHHHHHTSCTTCEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCC--HHHHHHHHHhchhhhccccCCCcE-EEEccHHHHHhhccccCcc
Confidence 44699999999999999888863 389999999 679999988654321 1 12222 33333222 22345899
Q ss_pred EEEEcCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 142 IILGADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 142 lIi~sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
+||. |+.-.... -.++++.+++.|+|+
T Consensus 157 vIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~ 188 (290)
T d1xj5a_ 157 AVIV-DSSDPIGPAKELFEKPFFQSVARALRPG 188 (290)
T ss_dssp EEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEE
T ss_pred EEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCC
Confidence 9995 55432111 256899999999884
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.58 E-value=7.2e-05 Score=56.78 Aligned_cols=96 Identities=16% Similarity=-0.001 Sum_probs=65.5
Q ss_pred CCCeEEEECCCCCHHHHHHHHh-C-CeEEEEcCCCcHHHHHHHHHHHHHhC--C-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKV-G-SNVTLTDDSNRIEVLKNMRRVCEMNK--L-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~-g-a~V~~~D~~~~~~~l~~~~~n~~~n~--~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||-||-|.|.....+.+. + .+|+++|++ +++++.+++-...+. . +.++. +..++.... ..+.+||+
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID--~~Vi~~a~~~~~~~~~~~~d~r~~-i~~~D~~~~l~~~~~~yDv 151 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDID--GKVIEYSKKFLPSIAGKLDDPRVD-VQVDDGFMHIAKSENQYDV 151 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESC--HHHHHHHHHHCHHHHTTTTSTTEE-EEESCSHHHHHTCCSCEEE
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCC--HHHHHHHHHhChhhcccccCCCeE-EEechHHHHHhhcCCCCCE
Confidence 4579999999999999998885 3 489999999 679999988764432 1 12222 333443221 12458999
Q ss_pred EEEcCcCC---CCCC--hHHHHHHHHHhccCC
Q 030935 143 ILGADVFY---DASG--KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy---~~~~--~~~l~~~l~~~L~p~ 169 (169)
|+. |+.- .... -.++++.+++.|+|+
T Consensus 152 Ii~-D~~~p~~~~~~L~t~eFy~~~~~~L~~~ 182 (274)
T d1iy9a_ 152 IMV-DSTEPVGPAVNLFTKGFYAGIAKALKED 182 (274)
T ss_dssp EEE-SCSSCCSCCCCCSTTHHHHHHHHHEEEE
T ss_pred EEE-cCCCCCCcchhhccHHHHHHHHhhcCCC
Confidence 995 4322 1221 467899999999874
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=4.2e-05 Score=58.47 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=62.8
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhC--C-cceEEEEEcCCCCcC--CCCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNK--L-NCRVMGLTWGFLDAS--IFDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~--~-~~~~~~l~~~~~~~~--~~~~~fDl 142 (169)
..++||-||-|.|.+...+.+.. .+|+++|++ +++++.+++-...+. . +.++. +..++.... ..+.+||+
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD--~~Vv~~a~~~~~~~~~~~~d~rv~-i~~~Da~~~l~~~~~~yDv 154 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEID--EDVIQVSKKFLPGMAIGYSSSKLT-LHVGDGFEFMKQNQDAFDV 154 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESC--HHHHHHHHHHCHHHHGGGGCTTEE-EEESCHHHHHHTCSSCEEE
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCC--HHHHHHHHhhchhhccccCCCCce-EEEccHHHHHhcCCCCCCE
Confidence 45799999999999999888863 489999999 679999988654321 1 12222 333432221 12458999
Q ss_pred EEEcCcCCCCCC-----hHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDASG-----KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~~~-----~~~l~~~l~~~L~p~ 169 (169)
|+. |+.-.... -..+++.+++.|+|+
T Consensus 155 Ii~-D~~~p~~~~~~L~t~eF~~~~~~~L~~~ 185 (285)
T d2o07a1 155 IIT-DSSDPMGPAESLFKESYYQLMKTALKED 185 (285)
T ss_dssp EEE-ECC-----------CHHHHHHHHHEEEE
T ss_pred EEE-cCCCCCCcccccccHHHHHHHHHhcCCC
Confidence 996 65332211 245789999999874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.52 E-value=0.0007 Score=50.42 Aligned_cols=116 Identities=14% Similarity=-0.025 Sum_probs=67.2
Q ss_pred cceeecchHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE
Q 030935 47 YGLFVWPCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM 124 (169)
Q Consensus 47 ~g~~~W~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~ 124 (169)
.|..+-.++..|.+...+. ...++.+|+|||||.|..+..++.+. ..|.++++--. .-+ .-...+.++- .+.
T Consensus 44 ~~~~~SR~~~Kl~~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d--~~e-~P~~~~~~~~--ni~ 117 (257)
T d2p41a1 44 DHHAVSRGSAKLRWFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP--GHE-EPIPMSTYGW--NLV 117 (257)
T ss_dssp SSCCSSTHHHHHHHHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCST--TSC-CCCCCCSTTG--GGE
T ss_pred cCCCcchHHHHHHHHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCc--ccc-CCcccccccc--ccc
Confidence 3556668889997766654 44556689999999999999999765 37888887421 000 0000000111 122
Q ss_pred EEEcCCCCcCCCCCCCcEEEEcCcCCCCCCh-------HHHHHHHHHhccCC
Q 030935 125 GLTWGFLDASIFDLNPNIILGADVFYDASGK-------ICAFEILICSLFPI 169 (169)
Q Consensus 125 ~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~-------~~l~~~l~~~L~p~ 169 (169)
.+.-+.......+.+.|+|+| |+--+.... -.+++...+.|+|+
T Consensus 118 ~~~~~~dv~~l~~~~~D~vlc-Dm~ess~~~~vd~~Rtl~vLela~~wLk~g 168 (257)
T d2p41a1 118 RLQSGVDVFFIPPERCDTLLC-DIGESSPNPTVEAGRTLRVLNLVENWLSNN 168 (257)
T ss_dssp EEECSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTT
T ss_pred cchhhhhHHhcCCCcCCEEEe-eCCCCCCCchhhhhhHHHHHHHHHHHcccC
Confidence 233333333345668999998 543333221 13556666777764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.47 E-value=3.1e-05 Score=59.97 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=62.4
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCC--c-ceEEEEEcCCCCcCC--CCCCCcE
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKL--N-CRVMGLTWGFLDASI--FDLNPNI 142 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~--~-~~~~~l~~~~~~~~~--~~~~fDl 142 (169)
..++||-||-|.|.+...+++.. .+|+++|++ +++++.+++-...+.. + .++ .+..++....+ .+.+||+
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID--~~Vv~~a~~~~~~~~~~~~dprv-~i~i~Da~~~l~~~~~~yDv 182 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEID--EMVIDVAKKFLPGMSCGFSHPKL-DLFCGDGFEFLKNHKNEFDV 182 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSC--HHHHHHHHHHCTTTSGGGGCTTE-EEECSCHHHHHHHCTTCEEE
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEccc--HHHHHHHHhhchhhccccCCCCe-EEEEchHHHHHHhCCCCCCE
Confidence 35799999999999999888864 489999999 6799999986543321 1 122 24344432211 2458999
Q ss_pred EEEcCcCCCC---CC--hHHHHHHHHHhccCC
Q 030935 143 ILGADVFYDA---SG--KICAFEILICSLFPI 169 (169)
Q Consensus 143 Ii~sd~iy~~---~~--~~~l~~~l~~~L~p~ 169 (169)
||. |+.-.. .. -.++++.+++.|+|+
T Consensus 183 II~-D~~dp~~~~~~L~t~eFy~~~~~~L~~~ 213 (312)
T d2b2ca1 183 IIT-DSSDPVGPAESLFGQSYYELLRDALKED 213 (312)
T ss_dssp EEE-CCC-------------HHHHHHHHEEEE
T ss_pred EEE-cCCCCCCcchhhhhHHHHHHHHhhcCCC
Confidence 995 543211 11 356788999999874
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00024 Score=58.30 Aligned_cols=112 Identities=14% Similarity=0.062 Sum_probs=74.2
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh--------------------CCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV--------------------GSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~--------------------ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
..++++|.+......+.+|+|-.||+|.+-+.+.+. ...+.+.|++ +.+...++.|+.
T Consensus 150 ~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~--~~~~~la~~nl~ 227 (524)
T d2ar0a1 150 RPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV--PGTRRLALMNCL 227 (524)
T ss_dssp HHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESC--HHHHHHHHHHHH
T ss_pred cchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccC--HHHHHHHHHHHH
Confidence 346677777666667789999999999888776552 1258999999 569999999998
Q ss_pred HhCCcceE---EEEEcCCCCc--CCCCCCCcEEEEcCcCCCCCC--------------hHHHHHHHHHhccCC
Q 030935 116 MNKLNCRV---MGLTWGFLDA--SIFDLNPNIILGADVFYDASG--------------KICAFEILICSLFPI 169 (169)
Q Consensus 116 ~n~~~~~~---~~l~~~~~~~--~~~~~~fDlIi~sd~iy~~~~--------------~~~l~~~l~~~L~p~ 169 (169)
.++....+ ..+.+++... .....+||+|+++.++-.... --.+++.+.+.|+|+
T Consensus 228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~g 300 (524)
T d2ar0a1 228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPG 300 (524)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEE
T ss_pred hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhcccc
Confidence 88764211 0122222211 112348999999887732211 124788888888874
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00036 Score=52.96 Aligned_cols=76 Identities=13% Similarity=0.019 Sum_probs=54.6
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHhC--CeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKVG--SNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILG 145 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~g--a~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~ 145 (169)
..+|.+|||++||.|.=+..++..+ .+|++.|.++. =+..+++|++..+.+.......-........+.+||.|+.
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~--R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~ 177 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQ--RLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILL 177 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTT--THHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEE
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchh--hhhhHhhhhhcccccceeeeccccccchhcccccccEEEE
Confidence 3468899999999999888887765 37999999975 7888899999998875433221111111123458999995
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.0015 Score=49.61 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=52.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcc-eEEEEEcCCCCcC-CCCCCCcE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNC-RVMGLTWGFLDAS-IFDLNPNI 142 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~-~~~~l~~~~~~~~-~~~~~fDl 142 (169)
..+|.+|||++||.|.=+..+|.. ..+|++.|++ +.=++.+++|++..+... .+...+....... ....+||.
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~--~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~ 169 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLD--AKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHY 169 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESC--HHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCC--HHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeE
Confidence 346889999999999988777653 3489999999 457889999999998764 2222222221111 11247999
Q ss_pred EEEc
Q 030935 143 ILGA 146 (169)
Q Consensus 143 Ii~s 146 (169)
|+.-
T Consensus 170 VL~D 173 (293)
T d2b9ea1 170 ILLD 173 (293)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9963
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.65 E-value=0.0029 Score=46.00 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
+.|.+++.+... .+|..|||--||+|..++++.+.|-+.+++|++ ++.++.|+++++
T Consensus 199 ~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~--~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMN--AEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCC--HHHHHHHHHHHc
Confidence 456666655432 468899999999999999999999999999999 569999988875
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.64 E-value=0.0067 Score=46.31 Aligned_cols=74 Identities=14% Similarity=0.007 Sum_probs=52.9
Q ss_pred CCCCCeEEEECCCCCHHHHHHHHh---CCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC-CcCCCCCCCcEE
Q 030935 68 RFSGANVVELGAGTSLPGLVAAKV---GSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL-DASIFDLNPNII 143 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~~a~~---ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~-~~~~~~~~fDlI 143 (169)
..+|.+|||++||.|.=+..++.. ...+++.|.+ +.=+..++.|++..+.... . ..+.+. ........||.|
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~--~~r~~~l~~~~~r~~~~~i-~-~~~~d~~~~~~~~~~fD~I 189 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVD--ENRLRETRLNLSRLGVLNV-I-LFHSSSLHIGELNVEFDKI 189 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSC--HHHHHHHHHHHHHHTCCSE-E-EESSCGGGGGGGCCCEEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccC--HHHHHHHHHHHHHHHhhcc-c-cccccccccccccccccEE
Confidence 347889999999999887777664 2379999999 4578888899988887542 2 222322 222335589999
Q ss_pred EE
Q 030935 144 LG 145 (169)
Q Consensus 144 i~ 145 (169)
+.
T Consensus 190 Lv 191 (313)
T d1ixka_ 190 LL 191 (313)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=96.52 E-value=0.0024 Score=45.21 Aligned_cols=81 Identities=15% Similarity=0.050 Sum_probs=52.7
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---CCCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---SIFDL 138 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---~~~~~ 138 (169)
+.......+|..++|..+|.|.-+..+.+.+.+|+++|.+ +++++.++.. ..-...+....+.++.. .....
T Consensus 10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D--~~ai~~a~~~---~~~~~~~~~~~f~~~~~~l~~~~~~ 84 (182)
T d1wg8a2 10 ALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQD--PEAVARAKGL---HLPGLTVVQGNFRHLKRHLAALGVE 84 (182)
T ss_dssp HHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESC--HHHHHHHHHT---CCTTEEEEESCGGGHHHHHHHTTCS
T ss_pred HHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhh--hhHHHHHhhc---cccceeEeehHHHHHHHHHHHcCCC
Confidence 3333345578899999999999999888888899999999 6688887653 11222333222222211 11224
Q ss_pred CCcEEEEcCc
Q 030935 139 NPNIILGADV 148 (169)
Q Consensus 139 ~fDlIi~sd~ 148 (169)
++|.|+. |+
T Consensus 85 ~vdgIl~-DL 93 (182)
T d1wg8a2 85 RVDGILA-DL 93 (182)
T ss_dssp CEEEEEE-EC
T ss_pred ccCEEEE-Ec
Confidence 7898885 54
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.0024 Score=49.05 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=36.3
Q ss_pred CCCeEEEECCCCCHHHHHHHHhC-C-eEEEEcCCCcHHHHHHHHHHHH
Q 030935 70 SGANVVELGAGTSLPGLVAAKVG-S-NVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~g-a-~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
++..|||+|.|.|.++..+...+ + +|+++|.+ +.+++..++...
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D--~~~~~~L~~~~~ 88 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKR--SSLYKFLNAKFE 88 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCC--HHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECC--HHHHHHHHHhcc
Confidence 56689999999999999998764 4 89999999 458888776543
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.34 E-value=0.0023 Score=47.95 Aligned_cols=59 Identities=19% Similarity=0.092 Sum_probs=47.3
Q ss_pred HHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh
Q 030935 56 VILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN 117 (169)
Q Consensus 56 ~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n 117 (169)
+.|.+++.+... .+|..|||--||+|..++++.+.|-+.+++|++ ++.++.+++.+..+
T Consensus 237 ~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~--~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 237 AKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMK--PEYVAASAFRFLDN 295 (320)
T ss_dssp THHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESC--HHHHHHHHGGGSCS
T ss_pred hHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCC--HHHHHHHHHHHHhc
Confidence 355555554432 378899999999999999999999999999999 56999888776543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.33 E-value=0.006 Score=44.76 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=49.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM 116 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~ 116 (169)
-.+.|.+++.+.- -.+|..|||--||+|..++++.+.|-+.+++|+++ ..++.++++++.
T Consensus 192 kP~~L~~~~I~~~-s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~--~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 192 KPAAVIERLVRAL-SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAP--VFKEYYQKQLTF 251 (279)
T ss_dssp CCHHHHHHHHHHH-SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESST--HHHHHHHHHHHH
T ss_pred cchhHHHHHHHhh-cCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCH--HHHHHHHHHHHH
Confidence 3556666666543 23788999999999999999999999999999996 588888888764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.0046 Score=43.55 Aligned_cols=49 Identities=20% Similarity=0.125 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHh-C--CeEEEEcCCC
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKV-G--SNVTLTDDSN 102 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~-g--a~V~~~D~~~ 102 (169)
++..|.+...+..-..++.+||||||+.|..+..+++. + ..|+++|+.+
T Consensus 6 aafKL~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~ 57 (180)
T d1ej0a_ 6 AWFKLDEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP 57 (180)
T ss_dssp HHHHHHHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc
Confidence 56677776665544457789999999999999988874 3 3799999985
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0066 Score=41.75 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=34.6
Q ss_pred HhccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 63 WQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
.+.....+|.+||-+|+| .|+.++.+++ .|++|+++|.++. -++.+++
T Consensus 20 l~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~--k~~~a~~ 69 (168)
T d1piwa2 20 LVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR--KREDAMK 69 (168)
T ss_dssp HHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST--THHHHHH
T ss_pred HHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchh--HHHHhhc
Confidence 334456689999999998 6666666665 6899999999864 5555544
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.99 E-value=0.007 Score=44.32 Aligned_cols=52 Identities=19% Similarity=0.089 Sum_probs=34.9
Q ss_pred ceeecchHHHHHHH--HHhccCCCCCCeEEEECCCCCHHHHHHHHh------CCeEEEEcCCC
Q 030935 48 GLFVWPCSVILAEY--VWQQRYRFSGANVVELGAGTSLPGLVAAKV------GSNVTLTDDSN 102 (169)
Q Consensus 48 g~~~W~~~~~La~~--l~~~~~~~~~~~vLElGcGtGl~~l~~a~~------ga~V~~~D~~~ 102 (169)
|..+|.....++-| +... .+.++|||+|++.|..+++++.. .++|+++|++.
T Consensus 59 G~p~~k~p~d~~~~~eli~~---~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~ 118 (232)
T d2bm8a1 59 GLRMLKDPDTQAVYHDMLWE---LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL 118 (232)
T ss_dssp TEECCSCHHHHHHHHHHHHH---HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC
T ss_pred ceecccCHHHHHHHHHHHHH---hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcCh
Confidence 55555444444433 3322 35679999999999887766642 34899999985
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.63 E-value=0.018 Score=39.16 Aligned_cols=55 Identities=20% Similarity=0.128 Sum_probs=35.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 55 SVILAEYVWQQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 55 ~~~La~~l~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+..-+....++....+|.+||=+||| .|+..+.+++ +|++|+++|.++ +-++.++
T Consensus 12 a~~Ta~~al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~--~~~~~a~ 68 (166)
T d1llua2 12 AGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD--AKLELAR 68 (166)
T ss_dssp HHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh--hHHHhhh
Confidence 33334344444556678899889987 5555565565 578999999984 3555544
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.62 E-value=0.028 Score=41.72 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=46.9
Q ss_pred eEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCC--CCCCcEEEEcCcC
Q 030935 73 NVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIF--DLNPNIILGADVF 149 (169)
Q Consensus 73 ~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~--~~~fDlIi~sd~i 149 (169)
+||||-||.|.+++.+.+.|.+ +.++|++ +.+.+..+.|. . ..+. .++...... -.+.|+++++-+.
T Consensus 2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d--~~a~~~~~~N~----~-~~~~---~~Di~~~~~~~~~~~dll~~g~PC 71 (324)
T d1dcta_ 2 NLISLFSGAGGLDLGFQKAGFRIICANEYD--KSIWKTYESNH----S-AKLI---KGDISKISSDEFPKCDGIIGGPPC 71 (324)
T ss_dssp EEEEESCSSCHHHHHHHHHTCEEEEEEECC--HHHHHHHHHHC----C-SEEE---ESCTTTSCGGGSCCCSEEEECCCC
T ss_pred eEEEeCcCcCHHHHHHHHCCCEEEEEEeCC--HHHHHHHHHHC----C-CCCc---cCChhhCCHhHcccccEEeecccc
Confidence 6999999999999999888985 6699999 44666666553 2 2222 233322111 1378999998877
Q ss_pred C
Q 030935 150 Y 150 (169)
Q Consensus 150 y 150 (169)
-
T Consensus 72 q 72 (324)
T d1dcta_ 72 Q 72 (324)
T ss_dssp T
T ss_pred c
Confidence 5
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.54 E-value=0.022 Score=40.21 Aligned_cols=52 Identities=21% Similarity=0.162 Sum_probs=36.6
Q ss_pred HHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
+.+..+.....+|.+||-+|||. |+.++.+++ +|+ +|+++|.++ +-++.+++
T Consensus 14 a~~a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~--~rl~~a~~ 68 (195)
T d1kola2 14 GYHGAVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNP--ARLAHAKA 68 (195)
T ss_dssp HHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccc--hhhHhhhh
Confidence 33444455667899999999985 666666665 466 899999984 46666554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.47 E-value=0.0056 Score=42.68 Aligned_cols=91 Identities=19% Similarity=0.202 Sum_probs=56.7
Q ss_pred CCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCC--CCCcEEEE
Q 030935 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFD--LNPNIILG 145 (169)
Q Consensus 70 ~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~--~~fDlIi~ 145 (169)
+..+|+=||+| .|+-++..|+ +|++|++.|.+ ++.++.++.....+ .... .-.. +.+.+ ...|+||+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~--~~~l~~l~~~~~~~---~~~~--~~~~--~~l~~~~~~aDivI~ 101 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN--VERLSYLETLFGSR---VELL--YSNS--AEIETAVAEADLLIG 101 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHGGG---SEEE--ECCH--HHHHHHHHTCSEEEE
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc--HHHHHHHHHhhccc---ceee--hhhh--hhHHHhhccCcEEEE
Confidence 56799999999 6777776665 79999999999 45777666543322 1111 1110 01111 27899999
Q ss_pred cCcCCCCCChHHHHHHHHHhccCC
Q 030935 146 ADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 146 sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
+=.+--...+.-+-+...+.+|||
T Consensus 102 aalipG~~aP~lIt~~mv~~Mk~G 125 (168)
T d1pjca1 102 AVLVPGRRAPILVPASLVEQMRTG 125 (168)
T ss_dssp CCCCTTSSCCCCBCHHHHTTSCTT
T ss_pred eeecCCcccCeeecHHHHhhcCCC
Confidence 877765554444556666666664
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.02 E-value=0.036 Score=38.21 Aligned_cols=49 Identities=20% Similarity=0.222 Sum_probs=34.4
Q ss_pred HHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 61 YVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
+..+.....+|.+||=+|||. |+.++.+++ .|+ +|+++|.++ +-++.++
T Consensus 18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~--~r~~~a~ 69 (174)
T d1jqba2 18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP--ICVEAAK 69 (174)
T ss_dssp HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH--HHHHHHH
T ss_pred HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchh--hhHHHHH
Confidence 334445566888999899984 777777776 576 799999984 3455544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.97 E-value=0.027 Score=38.35 Aligned_cols=47 Identities=30% Similarity=0.338 Sum_probs=32.8
Q ss_pred hccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
+.....+|.+||=+||| .|+..+.+++ .|++|+++|.++ +-++.+++
T Consensus 20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~--~r~~~a~~ 68 (170)
T d1e3ja2 20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP--RRLEVAKN 68 (170)
T ss_dssp HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHH
T ss_pred HHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHH--HHHHHHHH
Confidence 33445678899999988 5566665555 588999999984 35555544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.96 E-value=0.04 Score=37.95 Aligned_cols=45 Identities=38% Similarity=0.491 Sum_probs=32.2
Q ss_pred cCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 66 RYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 66 ~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
....+|.+||=+||| .|+..+.+++ .|+ +|+++|.++ +-++.+++
T Consensus 24 ~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~--~~~~~a~~ 71 (182)
T d1vj0a2 24 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP--NRLKLAEE 71 (182)
T ss_dssp SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH--HHHHHHHH
T ss_pred hCCCCCCEEEEECCCccchhheeccccccccccccccccc--cccccccc
Confidence 345578999999987 4566666665 577 799999984 45665544
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=94.64 E-value=0.043 Score=41.05 Aligned_cols=71 Identities=13% Similarity=-0.019 Sum_probs=50.0
Q ss_pred CCCCeEEEECCCCCHHHHHHHHhCCe-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCC--CCCCCcEEEE
Q 030935 69 FSGANVVELGAGTSLPGLVAAKVGSN-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASI--FDLNPNIILG 145 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~~l~~a~~ga~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~--~~~~fDlIi~ 145 (169)
..+.+||||-||.|..++.+.+.|.+ |.++|++ +.+++..+.|.... . .++..... .-..+|++++
T Consensus 9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d--~~a~~~~~~N~~~~-~--------~~Di~~~~~~~~~~~Dll~g 77 (327)
T d2c7pa1 9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWD--KYAQEVYEMNFGEK-P--------EGDITQVNEKTIPDHDILCA 77 (327)
T ss_dssp TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCC--HHHHHHHHHHHSCC-C--------BSCGGGSCGGGSCCCSEEEE
T ss_pred CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCC--HHHHHHHHHHCCCC-C--------cCchhcCchhhcceeeeeec
Confidence 35679999999999999999999985 6779999 45888877776311 1 12221111 1137899998
Q ss_pred cCcCC
Q 030935 146 ADVFY 150 (169)
Q Consensus 146 sd~iy 150 (169)
+-++-
T Consensus 78 gpPCq 82 (327)
T d2c7pa1 78 GFPCQ 82 (327)
T ss_dssp ECCCT
T ss_pred ccccc
Confidence 88765
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.62 E-value=0.084 Score=40.63 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=35.0
Q ss_pred HHHHHHHHHhc---cCCCCCCeEEEECCCCCHHHHHHHHh--------C-CeEEEEcCCCcHHHHHHHHHH
Q 030935 55 SVILAEYVWQQ---RYRFSGANVVELGAGTSLPGLVAAKV--------G-SNVTLTDDSNRIEVLKNMRRV 113 (169)
Q Consensus 55 ~~~La~~l~~~---~~~~~~~~vLElGcGtGl~~l~~a~~--------g-a~V~~~D~~~~~~~l~~~~~n 113 (169)
+..+|.|+... ....+..+|+|+|+|+|.++.-+.+. - .++..++.++ .+-+..+++
T Consensus 61 g~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~--~L~~~Q~~~ 129 (365)
T d1zkda1 61 GELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP--VLRQKQQTL 129 (365)
T ss_dssp HHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccch--hHHHHHHHH
Confidence 56667776543 22223447999999999887644331 1 2688999984 344444433
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.48 E-value=0.072 Score=38.95 Aligned_cols=82 Identities=15% Similarity=0.096 Sum_probs=54.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc---------CCC
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA---------SIF 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~---------~~~ 136 (169)
++||++|=.|+..|+ ++..+++.|++|++++.++ +-++.+.+.+...+..+.....+..+... ...
T Consensus 4 L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~--~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 4 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE--KELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 589999999998774 3445566799999999994 56777777777777766555555543221 011
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
..+.|+++.+--+...
T Consensus 82 ~g~idilinnag~~~~ 97 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVIH 97 (258)
T ss_dssp TSCCCEEEECCCCCCC
T ss_pred CCCcEEEecccccccc
Confidence 2468999865544433
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.30 E-value=0.071 Score=38.98 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--C
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F--D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~--~ 137 (169)
++||++|=-|++.|+ ++..+++.|++|+++|.+ ++-++.+.+.++..+.++.....+..+... .. . -
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMN--REALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 589999999988775 345566789999999998 457777777777666665444444433211 00 0 1
Q ss_pred CCCcEEEEcC
Q 030935 138 LNPNIILGAD 147 (169)
Q Consensus 138 ~~fDlIi~sd 147 (169)
.+.|++|.+-
T Consensus 81 g~iDilVnna 90 (260)
T d1zema1 81 GKIDFLFNNA 90 (260)
T ss_dssp SCCCEEEECC
T ss_pred CCCCeehhhh
Confidence 3789998654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.07 E-value=0.032 Score=39.18 Aligned_cols=95 Identities=15% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC----------CcCCC-
Q 030935 70 SGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL----------DASIF- 136 (169)
Q Consensus 70 ~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~----------~~~~~- 136 (169)
+..+|+=||+| .|+.++..|+ +|++|++.|.+.. .++.++.... ..+... ...+... .....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~--~~~~l~~l~~-~~i~~~--~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA--TKEQVESLGG-KFITVD--DEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST--THHHHHHTTC-EECCC-------------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH--HHHHHHHhhc-ceEEEe--ccccccccccccchhhcCHHHHH
Confidence 55699999999 4566665554 7999999999963 6666554211 111100 0000000 00000
Q ss_pred ---------CCCCcEEEEcCcCCCCCChHHHHHHHHHhccCC
Q 030935 137 ---------DLNPNIILGADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 137 ---------~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
-...|+||++=.+--...+.-+-+...+.+|||
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~G 144 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPG 144 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCC
Confidence 026899999888876555544556666777765
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=93.97 E-value=0.16 Score=37.00 Aligned_cols=83 Identities=11% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC---
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--- 135 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--- 135 (169)
.++||++|=-|++.|+ ++..+++.|++|+++|.+ ++-++.+.+.+...+..+.....+..+... ..
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~--~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRN--QKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 82 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 4589999999988775 344556679999999998 457777766677666655544444333211 01
Q ss_pred CCCCCcEEEEcCcCCCC
Q 030935 136 FDLNPNIILGADVFYDA 152 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~ 152 (169)
...+.|+++.+--+...
T Consensus 83 ~~~~idilvnnAG~~~~ 99 (259)
T d2ae2a_ 83 FHGKLNILVNNAGIVIY 99 (259)
T ss_dssp TTTCCCEEEECCCCCCC
T ss_pred hCCCceEEEECCceecc
Confidence 12378999976544433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=93.90 E-value=0.093 Score=36.05 Aligned_cols=40 Identities=18% Similarity=0.342 Sum_probs=31.4
Q ss_pred hccCCCCCCeEEEECCCC-CHHHHHHHH-hCC-eEEEEcCCCc
Q 030935 64 QQRYRFSGANVVELGAGT-SLPGLVAAK-VGS-NVTLTDDSNR 103 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga-~V~~~D~~~~ 103 (169)
+.....+|.+||=+|||. |+.++.+++ .|+ +|+++|.++.
T Consensus 22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~ 64 (174)
T d1e3ia2 22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE 64 (174)
T ss_dssp TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH
Confidence 445566889999999985 888887777 577 7999999963
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.87 E-value=0.094 Score=36.03 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=37.4
Q ss_pred hHHHHHHHHH-hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 54 CSVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 54 ~~~~La~~l~-~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
++..-+.+.. +.....+|.+|+=.||| .|+.++.+++ .|+ +|+++|.++. -++.+++
T Consensus 12 Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~--kl~~Ak~ 72 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKD--KFEKAMA 72 (176)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHH--HHHHHHh
Confidence 3444444333 44456678899999998 4566666665 564 8999999953 6666554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.80 E-value=0.14 Score=34.27 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=33.6
Q ss_pred HHHHHhccCCCCCCeEEEECCCC-CHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHH
Q 030935 59 AEYVWQQRYRFSGANVVELGAGT-SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 59 a~~l~~~~~~~~~~~vLElGcGt-Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
+..........+|.+||=.|||+ |+..+.+++ .|++|++++.++ +-++.+++
T Consensus 16 a~~al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~--~r~~~~k~ 69 (168)
T d1rjwa2 16 TYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGD--EKLELAKE 69 (168)
T ss_dssp HHHHHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH--HHHHHHHH
T ss_pred HHHHHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCH--HHhhhhhh
Confidence 33334444566888999999984 455555555 577999999984 34444433
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.78 E-value=0.1 Score=38.23 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=56.7
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--C----C--C
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S----I--F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~----~--~ 136 (169)
.++||++|=-|++.|+ ++..+++.|++|++++.+. .+.++.+.+.++.++..+.....+..+... . . .
T Consensus 15 sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 93 (272)
T d1g0oa_ 15 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS-TESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 93 (272)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc-hHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHH
Confidence 4689999999998875 4456667799999999886 467777777777777765555444443211 0 0 0
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
-.+.|+++.+--....
T Consensus 94 ~g~idilV~nag~~~~ 109 (272)
T d1g0oa_ 94 FGKLDIVCSNSGVVSF 109 (272)
T ss_dssp HSCCCEEEECCCCCCC
T ss_pred hCCCCccccccccchh
Confidence 1378999877655544
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.12 Score=35.18 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=56.0
Q ss_pred chHHHHHHHHHh-ccCCCCCCeEEEECC--CCCHHHHHHHH-hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEc
Q 030935 53 PCSVILAEYVWQ-QRYRFSGANVVELGA--GTSLPGLVAAK-VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTW 128 (169)
Q Consensus 53 ~~~~~La~~l~~-~~~~~~~~~vLElGc--GtGl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~ 128 (169)
|.+...|.+.+. .....+|.+||=.|+ |.|..++.+++ .|++|++++.++ +-.+.+++ .+... + ++-
T Consensus 10 ~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~--~~~~~~~~----~Ga~~-v--i~~ 80 (174)
T d1yb5a2 10 GIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE--EGQKIVLQ----NGAHE-V--FNH 80 (174)
T ss_dssp HHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHH----TTCSE-E--EET
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccc--cccccccc----cCccc-c--ccc
Confidence 455555665543 334568899999997 25566666666 588999999773 34444432 44431 2 222
Q ss_pred CCC--Cc----CCCCCCCcEEEEcCcCCCCCChHHHHHHHHHhccC
Q 030935 129 GFL--DA----SIFDLNPNIILGADVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 129 ~~~--~~----~~~~~~fDlIi~sd~iy~~~~~~~l~~~l~~~L~p 168 (169)
.+. .+ ......+|+|+.+ + -.+.++...+.|+|
T Consensus 81 ~~~~~~~~i~~~t~~~g~d~v~d~--~-----g~~~~~~~~~~l~~ 119 (174)
T d1yb5a2 81 REVNYIDKIKKYVGEKGIDIIIEM--L-----ANVNLSKDLSLLSH 119 (174)
T ss_dssp TSTTHHHHHHHHHCTTCEEEEEES--C-----HHHHHHHHHHHEEE
T ss_pred ccccHHHHhhhhhccCCceEEeec--c-----cHHHHHHHHhccCC
Confidence 211 11 1123468888842 2 23445555666665
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.46 E-value=0.13 Score=37.48 Aligned_cols=81 Identities=9% Similarity=0.008 Sum_probs=52.5
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC---
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--- 135 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--- 135 (169)
.++||++|=-|++.|+ ++..+++.|++|++++.++ +-++.+.+.+...+.++.....+..+... ..
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~--~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE--YELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 82 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHH
Confidence 4589999999988875 3445667799999999984 56776666676666555444444332211 00
Q ss_pred CCCCCcEEEEcCcCC
Q 030935 136 FDLNPNIILGADVFY 150 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy 150 (169)
...+.|+++.+--+.
T Consensus 83 ~~g~idilvnnAG~~ 97 (259)
T d1xq1a_ 83 FGGKLDILINNLGAI 97 (259)
T ss_dssp HTTCCSEEEEECCC-
T ss_pred hCCCccccccccccc
Confidence 124789999765444
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.23 Score=36.06 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=52.8
Q ss_pred CCCCCeEEEECCCCCHHH---HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEE--EcCCCCc--C----CC
Q 030935 68 RFSGANVVELGAGTSLPG---LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGL--TWGFLDA--S----IF 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~---l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l--~~~~~~~--~----~~ 136 (169)
.++||.+|=-|++.|+-. ..+++.|++|++++.+ ++-++.+.+.++..+.+.++..+ +..+... . ..
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~--~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCART--VGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 478999999999887532 3445679999999998 45777777777766554444433 3322111 0 00
Q ss_pred --CCCCcEEEEcCcCCCC
Q 030935 137 --DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 --~~~fDlIi~sd~iy~~ 152 (169)
-.+.|++|.+--.+..
T Consensus 85 ~~~g~iD~lVnnAg~~~~ 102 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARP 102 (257)
T ss_dssp HHHCCCSEEEECCCCCCC
T ss_pred HhcCCCCEEEecccccCC
Confidence 1378999976655433
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.12 Score=34.84 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=28.2
Q ss_pred hccCCCCCCeEEEECCC-CCHHHHHHHH-hCCeEEEEcCCCc
Q 030935 64 QQRYRFSGANVVELGAG-TSLPGLVAAK-VGSNVTLTDDSNR 103 (169)
Q Consensus 64 ~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga~V~~~D~~~~ 103 (169)
+.....+|.+||=+||| .|+..+.+++ +|++++++|.++.
T Consensus 24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~ 65 (168)
T d1uufa2 24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEA 65 (168)
T ss_dssp HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchh
Confidence 44456688999989987 4555555555 5888888888753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.25 Score=35.64 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=57.5
Q ss_pred CCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--C----C--
Q 030935 67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--S----I-- 135 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~----~-- 135 (169)
..+.|+.+|=-|++.|+- +..+++.|++|+++|.+ ++-++.+...+...+.++.....+..+... . .
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~--~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDIN--KHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 356899999999998854 44567789999999998 457777777777666655544444443221 0 0
Q ss_pred CCCCCcEEEEcCcCCCCCC
Q 030935 136 FDLNPNIILGADVFYDASG 154 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~~~ 154 (169)
.-...|+++.+--+.....
T Consensus 81 ~~g~idilinnag~~~~~~ 99 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYTSD 99 (244)
T ss_dssp HTCCCSEEEECCCCCCCCC
T ss_pred HcCCCceeEeecccccccc
Confidence 1237899887766654433
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.13 Score=34.87 Aligned_cols=46 Identities=30% Similarity=0.370 Sum_probs=31.6
Q ss_pred ccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 65 QRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 65 ~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
.....+|.+||=+||| .|+..+.+++ .|+ +|+++|.++ .-++.+++
T Consensus 21 ~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~--~rl~~a~~ 69 (171)
T d1pl8a2 21 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA--TRLSKAKE 69 (171)
T ss_dssp HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH--HHHHHHHH
T ss_pred HhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH--HHHHHHHH
Confidence 3345678899999997 4455555555 577 799999994 45555543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=92.67 E-value=0.11 Score=35.56 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=36.9
Q ss_pred hHHHHHHHH-HhccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 54 CSVILAEYV-WQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 54 ~~~~La~~l-~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
++..-+... .+.....+|.+||=+||| .|+.++.+++ .|+ +|+++|.++. -++.+++
T Consensus 10 Ca~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~--kl~~a~~ 70 (174)
T d1p0fa2 10 CGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKD--KFPKAIE 70 (174)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHH--HHHHHHH
Confidence 333333333 344556789999999998 4455555555 576 7999999964 5555543
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=92.62 E-value=0.49 Score=28.76 Aligned_cols=70 Identities=9% Similarity=0.050 Sum_probs=40.5
Q ss_pred CCCHH--HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCCCCChHH
Q 030935 80 GTSLP--GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYDASGKIC 157 (169)
Q Consensus 80 GtGl~--~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~~~~~~~ 157 (169)
|+|.. +..+.++|.+|.+.|..+. ...+ .++..|+.+. .+...+.+ ...|+|+.+..+- .+-+.
T Consensus 11 G~GMs~LA~~L~~~G~~VsGSD~~~~-~~t~----~L~~~Gi~i~-----~gh~~~~i--~~~d~vV~SsAI~--~~npe 76 (89)
T d1j6ua1 11 GIGMSAVALHEFSNGNDVYGSNIEET-ERTA----YLRKLGIPIF-----VPHSADNW--YDPDLVIKTPAVR--DDNPE 76 (89)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSCC-HHHH----HHHHTTCCEE-----SSCCTTSC--CCCSEEEECTTCC--TTCHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEeCCCC-hhHH----HHHHCCCeEE-----eeeccccc--CCCCEEEEecCcC--CCCHH
Confidence 45544 4456678999999999974 3333 2566776532 12111112 2679999888884 33444
Q ss_pred HHHHHH
Q 030935 158 AFEILI 163 (169)
Q Consensus 158 l~~~l~ 163 (169)
+.+...
T Consensus 77 l~~A~~ 82 (89)
T d1j6ua1 77 IVRARM 82 (89)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=92.50 E-value=0.32 Score=35.26 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=50.1
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEE--EEEcCCCCc--CC----C-
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVM--GLTWGFLDA--SI----F- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~--~l~~~~~~~--~~----~- 136 (169)
++||++|=-|++.|+ ++..+++.|++|+++|.+ ++-++.+...+...+...++. ..|..+... .. .
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~--~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVS--SEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 578999999998875 355667789999999998 457776666665554433333 333333211 00 0
Q ss_pred -CCCCcEEEEcCcC
Q 030935 137 -DLNPNIILGADVF 149 (169)
Q Consensus 137 -~~~fDlIi~sd~i 149 (169)
-.+.|++|.+-=+
T Consensus 80 ~~G~iDiLVnnAG~ 93 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGI 93 (258)
T ss_dssp HHSCCSEEEECCCC
T ss_pred HhCCCCEEEECCcc
Confidence 1378999976543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.13 E-value=0.26 Score=35.64 Aligned_cols=86 Identities=8% Similarity=0.021 Sum_probs=54.7
Q ss_pred CCCCCeEEEECCCCC---HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC------C
Q 030935 68 RFSGANVVELGAGTS---LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtG---l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~------~ 136 (169)
++.||++|=-|++.| -++..+++.|++|+.++... .+.++.+.+.++.++.++.....+..+... .. .
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~-~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS-SKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC-hHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH
Confidence 468999998886655 23345556799999876655 467788888888777766554444433211 00 0
Q ss_pred CCCCcEEEEcCcCCCCCC
Q 030935 137 DLNPNIILGADVFYDASG 154 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~ 154 (169)
-...|++|.+--+.....
T Consensus 82 ~g~idilinnag~~~~~~ 99 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCD 99 (259)
T ss_dssp HSCEEEEECCCCCCCCCC
T ss_pred cCCCcEEEeccccccccc
Confidence 137899997766655543
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=92.08 E-value=0.7 Score=28.35 Aligned_cols=82 Identities=10% Similarity=0.106 Sum_probs=48.1
Q ss_pred CCCCCCeEEEECCC-CCHHH--HHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAG-TSLPG--LVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tGl~~--l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
...+.+++.=+|.| +|.-+ ..+.++|.+|.+.|.... ...+. +..++..+. . +...... ...|+|
T Consensus 4 ~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~-~~~~~----L~~~Gi~v~---~--g~~~~~i--~~~d~v 71 (96)
T d1p3da1 4 EMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG-VVTQR----LAQAGAKIY---I--GHAEEHI--EGASVV 71 (96)
T ss_dssp CCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS-HHHHH----HHHTTCEEE---E--SCCGGGG--TTCSEE
T ss_pred cchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC-hhhhH----HHHCCCeEE---E--CCccccC--CCCCEE
Confidence 34456788888754 77555 566778999999999864 23322 334565421 2 2111222 367999
Q ss_pred EEcCcCCCCCChHHHHHHH
Q 030935 144 LGADVFYDASGKICAFEIL 162 (169)
Q Consensus 144 i~sd~iy~~~~~~~l~~~l 162 (169)
+.+..+ +.+-+.+.+..
T Consensus 72 V~S~AI--~~~npel~~A~ 88 (96)
T d1p3da1 72 VVSSAI--KDDNPELVTSK 88 (96)
T ss_dssp EECTTS--CTTCHHHHHHH
T ss_pred EECCCc--CCCCHHHHHHH
Confidence 988876 23334444433
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.81 E-value=0.29 Score=32.87 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=35.4
Q ss_pred hHHHHHHHHH-hccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 54 CSVILAEYVW-QQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 54 ~~~~La~~l~-~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
++..-+.... +.....+|.+||=.||| .|..++.+++ .|+ .|+++|.++. -++.+++
T Consensus 11 ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~--k~~~ak~ 71 (176)
T d2fzwa2 11 CGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKD--KFARAKE 71 (176)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGG--GHHHHHH
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHH--HHHHHHH
Confidence 4444444444 44456789999999998 3344444444 575 7999999853 4454443
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=91.77 E-value=0.16 Score=36.89 Aligned_cols=84 Identities=12% Similarity=0.057 Sum_probs=50.7
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc------CC--C
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA------SI--F 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~------~~--~ 136 (169)
.++||++|=-|++.|+ ++..+++.|++|+++|.++. +..+.+++-.+..+.++.....+..+... .. .
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~-~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA-DAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT-THHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 4689999999977664 33455667999999999863 34444444344556555444444433211 00 1
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
-.+.|++|.+--+...
T Consensus 85 ~g~iDilVnnAg~~~~ 100 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVV 100 (260)
T ss_dssp SCSEEEEEECCCCCCC
T ss_pred hCCCcEeccccccccc
Confidence 1378999877655443
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.69 Score=33.18 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=54.2
Q ss_pred CCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC--cceEEEEEcCCCCc--CCC------
Q 030935 70 SGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL--NCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 70 ~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~--~~~~~~l~~~~~~~--~~~------ 136 (169)
.||.+|=-|++.|+- +..+++.|++|+++|.++ +-++.+...+..... .+.....|..+... ...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL--EAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 588899999887742 334455799999999984 466655555543322 23333333333211 000
Q ss_pred CCCCcEEEEcCcCCCCCChHHHHH
Q 030935 137 DLNPNIILGADVFYDASGKICAFE 160 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~~~~~~l~~ 160 (169)
-.+.|++|.+--+......+..++
T Consensus 80 ~G~iDilVnnAg~~~~~~~~~~~~ 103 (254)
T d2gdza1 80 FGRLDILVNNAGVNNEKNWEKTLQ 103 (254)
T ss_dssp HSCCCEEEECCCCCCSSSHHHHHH
T ss_pred cCCcCeecccccccccccchheee
Confidence 137899998888877777666554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=91.55 E-value=0.43 Score=32.24 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=31.2
Q ss_pred HhccCCCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 63 WQQRYRFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 63 ~~~~~~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
.+.....+|.+||=+||| .|+.++.+++ .|+ .|+++|.++ +-++.+++
T Consensus 21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~--~k~~~a~~ 71 (174)
T d1f8fa2 21 INALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE--SRLELAKQ 71 (174)
T ss_dssp HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH--HHHHHHHH
T ss_pred HHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH--HHHHHHHH
Confidence 344456688899999987 3445555554 577 678889884 35555544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.53 E-value=0.26 Score=35.69 Aligned_cols=82 Identities=11% Similarity=0.071 Sum_probs=52.4
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--C
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F--D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~--~ 137 (169)
++||++|=-|++.|+- +..+++.|++|++++.+ ++-++.+.+.++..+.++.....+..+... .. . -
T Consensus 9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~--~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~ 86 (255)
T d1fmca_ 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN--ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL 86 (255)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5899999888777643 23455679999999998 457777777777666655444444333211 00 0 1
Q ss_pred CCCcEEEEcCcCCCC
Q 030935 138 LNPNIILGADVFYDA 152 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~ 152 (169)
.+.|+++.+--+...
T Consensus 87 g~iDilvnnAG~~~~ 101 (255)
T d1fmca_ 87 GKVDILVNNAGGGGP 101 (255)
T ss_dssp SSCCEEEECCCCCCC
T ss_pred CCCCEeeeCCcCCCC
Confidence 378999976555443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=91.25 E-value=0.33 Score=32.70 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=35.7
Q ss_pred HHHHHHHHHhc-cCCCCCCeEEEECCCC--CHHHHHHHH-hCCeEEEEcCCCcHHHHHHHH
Q 030935 55 SVILAEYVWQQ-RYRFSGANVVELGAGT--SLPGLVAAK-VGSNVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 55 ~~~La~~l~~~-~~~~~~~~vLElGcGt--Gl~~l~~a~-~ga~V~~~D~~~~~~~l~~~~ 111 (169)
+..-|.+.+.+ ....+|.+||=.|+|+ |...+.+|+ .|++|++++.++ +-.+.++
T Consensus 12 ~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~--~k~~~~~ 70 (179)
T d1qora2 12 KGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA--QKAQSAL 70 (179)
T ss_dssp HHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSH--HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccch--HHHHHHH
Confidence 33444444443 3456788999987664 556666666 688999999994 3455544
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.16 E-value=0.34 Score=35.36 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=49.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc---ceEEEEEcCCCCc--CCC----
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDA--SIF---- 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~---~~~~~l~~~~~~~--~~~---- 136 (169)
++||++|=-|++.|+ ++..+++.|++|+++|.+ ++-++.+.+.+...+.. +.....|..+... ...
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~--~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRN--EDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 578999999988875 334556679999999998 45777777777766543 2233333332211 000
Q ss_pred --CCCCcEEEEcC
Q 030935 137 --DLNPNIILGAD 147 (169)
Q Consensus 137 --~~~fDlIi~sd 147 (169)
-.+.|+++.+-
T Consensus 80 ~~~G~iDilVnnA 92 (274)
T d1xhla_ 80 AKFGKIDILVNNA 92 (274)
T ss_dssp HHHSCCCEEEECC
T ss_pred HHcCCceEEEeec
Confidence 13789999764
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.08 E-value=0.37 Score=34.75 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHH-HHhCCcceEEEEEcCCCCc--CCC-----
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRVMGLTWGFLDA--SIF----- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~-~~n~~~~~~~~l~~~~~~~--~~~----- 136 (169)
.++||++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+ +..+.++.....+..+... ...
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL--EEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3589999999988775 3445567799999999984 3444443333 4556555444444333211 000
Q ss_pred -CCCCcEEEEcCcCCCC
Q 030935 137 -DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 -~~~fDlIi~sd~iy~~ 152 (169)
-.+.|++|.+--+...
T Consensus 80 ~~g~iDiLVnnAG~~~~ 96 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRR 96 (251)
T ss_dssp HHSCCCEEEECCCCCCC
T ss_pred HcCCCCEEEECCCCCCC
Confidence 1378999976555433
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.97 E-value=0.32 Score=35.32 Aligned_cols=84 Identities=11% Similarity=0.030 Sum_probs=54.1
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++||++|=-|++.|+- +..+++.|++|++++.+. .+.++.+.+.++..+.++.....+..+... ...
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~-~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK-EDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE 82 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC-HHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 36899999999888742 345556799999999986 356777777777666655444444433211 000
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
-.+.|++|.+--+...
T Consensus 83 ~G~iDiLVnnAG~~~~ 98 (261)
T d1geea_ 83 FGKLDVMINNAGLENP 98 (261)
T ss_dssp HSCCCEEEECCCCCCC
T ss_pred hCCCCEeeccceecCC
Confidence 1378999977655544
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.91 E-value=0.36 Score=34.80 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=52.3
Q ss_pred CCCCCeEEEECCCCCHHHH----HHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC------
Q 030935 68 RFSGANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------ 135 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l----~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~------ 135 (169)
.+++|.+|=-|++.| +|. .+++.|++|+++|.+ ++.++.+.+.++..+.++.....+..+... ..
T Consensus 7 ~lenKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~--~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 83 (251)
T d2c07a1 7 CGENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRT--QKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT 83 (251)
T ss_dssp CCSSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESS--HHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 457889999998776 444 344568899999998 457777777777666655444444433211 00
Q ss_pred CCCCCcEEEEcCcCCCC
Q 030935 136 FDLNPNIILGADVFYDA 152 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~ 152 (169)
.-.+.|++|.+--+...
T Consensus 84 ~~g~iDilvnnag~~~~ 100 (251)
T d2c07a1 84 EHKNVDILVNNAGITRD 100 (251)
T ss_dssp HCSCCCEEEECCCCCCC
T ss_pred hcCCceeeeeccccccc
Confidence 01388999976655433
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=90.90 E-value=0.32 Score=35.16 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=50.6
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH-HhCCcceEEEEEcCCCCc--CCC------
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE-MNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~-~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
++||.+|=-|++.|+ ++..+++.|++|++++.++ .+.++.++..+. ..+.++.....|..+... ...
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~-~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD-AAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC-HHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 578999988888775 3345667799999999986 356666665553 345444433333333211 000
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
-.+.|++|.+-=+...
T Consensus 81 ~G~iDiLVnnAG~~~~ 96 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHT 96 (260)
T ss_dssp HSCCSEEEECCCCCCC
T ss_pred hCCCcEEEeecccccC
Confidence 1378999866545444
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=90.84 E-value=0.15 Score=34.72 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=35.4
Q ss_pred cchHHHHHHHHHhccCCCCCCeEEEECC-C-CCHHHHHHHH-hCCeEEEEcCCC
Q 030935 52 WPCSVILAEYVWQQRYRFSGANVVELGA-G-TSLPGLVAAK-VGSNVTLTDDSN 102 (169)
Q Consensus 52 W~~~~~La~~l~~~~~~~~~~~vLElGc-G-tGl~~l~~a~-~ga~V~~~D~~~ 102 (169)
.|.+...|.+..+.....+|.+||=.|+ | .|...+.+++ .|++|++++.++
T Consensus 9 l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~ 62 (171)
T d1iz0a2 9 FPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 62 (171)
T ss_dssp SHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence 3555555666666556678899999885 3 3455565666 588999999874
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.61 E-value=0.3 Score=36.11 Aligned_cols=70 Identities=13% Similarity=-0.008 Sum_probs=44.9
Q ss_pred CeEEEECCCCCHHHHHHHHhCC--e-EEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC----CCCCCCcEEE
Q 030935 72 ANVVELGAGTSLPGLVAAKVGS--N-VTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS----IFDLNPNIIL 144 (169)
Q Consensus 72 ~~vLElGcGtGl~~l~~a~~ga--~-V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~----~~~~~fDlIi 144 (169)
.+|+||.||.|.+++.+.+.|. + |.++|++ +.+++..+.|. ....+ ..++.... +....+|+++
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~--~~a~~~~~~n~----~~~~~---~~~di~~~~~~~~~~~~~Dll~ 73 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVN--TVANEVYKYNF----PHTQL---LAKTIEGITLEEFDRLSFDMIL 73 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCC--HHHHHHHHHHC----TTSCE---ECSCGGGCCHHHHHHHCCSEEE
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECC--HHHHHHHHHHC----CCCCc---ccCchhhCCHhHcCCCCccEEE
Confidence 4799999999999998888885 4 6789999 45777666653 22221 12332211 1112789999
Q ss_pred EcCcCC
Q 030935 145 GADVFY 150 (169)
Q Consensus 145 ~sd~iy 150 (169)
++-++-
T Consensus 74 ggpPCq 79 (343)
T d1g55a_ 74 MSPPCQ 79 (343)
T ss_dssp ECCC--
T ss_pred eecccc
Confidence 888775
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.52 E-value=0.71 Score=31.58 Aligned_cols=80 Identities=11% Similarity=0.049 Sum_probs=48.6
Q ss_pred cCCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcC-CCCCCCc
Q 030935 66 RYRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDAS-IFDLNPN 141 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~-~~~~~fD 141 (169)
...++||+||=.|++.|+- +..+++.|++|++++.+ ++-++.+.+.+..+. .+.+...+-.+.... ..-...|
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~--~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~iD 94 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK--LDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKGAH 94 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS--HHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCS
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccc--hHHHHHHHHHHHhcc-chhhhhhhcccHHHHHHHhcCcC
Confidence 4577999999999877643 34556679999999999 456666666554432 122233443332110 0113678
Q ss_pred EEEEcCc
Q 030935 142 IILGADV 148 (169)
Q Consensus 142 lIi~sd~ 148 (169)
++|.+--
T Consensus 95 ilin~Ag 101 (191)
T d1luaa1 95 FVFTAGA 101 (191)
T ss_dssp EEEECCC
T ss_pred eeeecCc
Confidence 8887643
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=90.40 E-value=0.46 Score=36.88 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=39.0
Q ss_pred CCCeEEEECCCCCHHHHHHHHh----CCeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 70 SGANVVELGAGTSLPGLVAAKV----GSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 70 ~~~~vLElGcGtGl~~l~~a~~----ga~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
++..++|+||-.|..+..+++. +.+|++.|-+ +...+.+++|++.|..
T Consensus 212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~--p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPD--RINLQTLQNVLRRYTD 263 (395)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCC--HHHHHHHHHHHHHTTT
T ss_pred CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCC--HHHHHHHHHHHHhccc
Confidence 5568999999999988866542 2489999998 6799999999987754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=90.28 E-value=0.48 Score=34.60 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=48.9
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHH-HHhCCcceEEEEEcCCCCcC--------C
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVC-EMNKLNCRVMGLTWGFLDAS--------I 135 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~-~~n~~~~~~~~l~~~~~~~~--------~ 135 (169)
.++||++|=-|+..|+ ++..+++.|++|+++|.++ +-++.+.+.+ ...+..+.....+..+.... .
T Consensus 22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~--~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM--DVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH--HHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 5789999999987763 2334455799999999995 3444444333 44555444443333322110 0
Q ss_pred CCCCCcEEEEcCcCCCC
Q 030935 136 FDLNPNIILGADVFYDA 152 (169)
Q Consensus 136 ~~~~fDlIi~sd~iy~~ 152 (169)
.....|+++.+--....
T Consensus 100 ~~g~iDilvnnAg~~~~ 116 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFI 116 (294)
T ss_dssp HTCSCSEEEECCCCCCC
T ss_pred hccccchhhhhhhhccc
Confidence 12478999876555433
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.06 E-value=0.91 Score=30.08 Aligned_cols=80 Identities=16% Similarity=0.107 Sum_probs=45.2
Q ss_pred eEEEECCCCCHHHH----HHHHhCC--eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEc
Q 030935 73 NVVELGAGTSLPGL----VAAKVGS--NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGA 146 (169)
Q Consensus 73 ~vLElGcGtGl~~l----~~a~~ga--~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~s 146 (169)
+|+=+||| +.|- .+.+.|. +|++.|.+ ++.++.++++ +.-.... ... ........|+|+.+
T Consensus 3 ~I~IIG~G--~mG~sla~~L~~~g~~~~I~~~D~~--~~~~~~a~~~----~~~~~~~----~~~-~~~~~~~~dlIila 69 (171)
T d2g5ca2 3 NVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDIN--PESISKAVDL----GIIDEGT----TSI-AKVEDFSPDFVMLS 69 (171)
T ss_dssp EEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSC--HHHHHHHHHT----TSCSEEE----SCG-GGGGGTCCSEEEEC
T ss_pred EEEEEccC--HHHHHHHHHHHhcCCCeEEEEEECC--hHHHHHHHHh----hcchhhh----hhh-hhhhcccccccccc
Confidence 56778775 5544 4444564 79999998 4566665542 3221111 111 11122367999876
Q ss_pred CcCCCCCChHHHHHHHHHhccC
Q 030935 147 DVFYDASGKICAFEILICSLFP 168 (169)
Q Consensus 147 d~iy~~~~~~~l~~~l~~~L~p 168 (169)
-.+ .....+++.+...++|
T Consensus 70 ~p~---~~~~~vl~~l~~~~~~ 88 (171)
T d2g5ca2 70 SPV---RTFREIAKKLSYILSE 88 (171)
T ss_dssp SCH---HHHHHHHHHHHHHSCT
T ss_pred CCc---hhhhhhhhhhhccccc
Confidence 654 3456666777777665
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.77 E-value=0.52 Score=34.25 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=50.3
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCc---ceEEEEEcCCCCc--CCC---
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLN---CRVMGLTWGFLDA--SIF--- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~---~~~~~l~~~~~~~--~~~--- 136 (169)
.++||++|=-|++.|+- +..+++.|++|+++|.+ ++-++.+.+.+...+.. +.....|..+... ...
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~--~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRS--SERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 46899999999887742 34556679999999998 45777777777665432 2333333333211 000
Q ss_pred ---CCCCcEEEEcCcC
Q 030935 137 ---DLNPNIILGADVF 149 (169)
Q Consensus 137 ---~~~fDlIi~sd~i 149 (169)
-.+.|++|.+--+
T Consensus 80 ~~~~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGA 95 (272)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHhCCceEEEeCCcc
Confidence 1378999976433
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.33 E-value=0.7 Score=32.81 Aligned_cols=49 Identities=12% Similarity=0.238 Sum_probs=36.5
Q ss_pred CCCCCeEEEECCCC--CH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhC
Q 030935 68 RFSGANVVELGAGT--SL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNK 118 (169)
Q Consensus 68 ~~~~~~vLElGcGt--Gl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~ 118 (169)
.++||++|=-|+++ |+ ++..+++.|++|++++.++. ..+.+++.....+
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~--~~~~~~~~~~~~~ 55 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK--LKGRVEEFAAQLG 55 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT--THHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH--HHHHHHHHHhhcC
Confidence 46899999999866 75 55677788999999999864 6666665555444
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=89.20 E-value=0.68 Score=30.83 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhccCCCCCCeEEEECCC--CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 54 CSVILAEYVWQQRYRFSGANVVELGAG--TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 54 ~~~~La~~l~~~~~~~~~~~vLElGcG--tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
++...+..........++.+||=+||+ .|+..+.+++ .|. +|+++|.++ +-++.+++
T Consensus 11 c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~--~~~~~~~~ 71 (170)
T d1jvba2 11 CSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE--EAVEAAKR 71 (170)
T ss_dssp THHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH--HHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccch--hhHHHHHH
Confidence 444445555555566788899999974 4455554444 564 899999984 34555543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.18 E-value=0.44 Score=34.53 Aligned_cols=84 Identities=17% Similarity=0.205 Sum_probs=49.7
Q ss_pred CCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHH-hCCcceEEEEEcCCCCcC------C-
Q 030935 67 YRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEM-NKLNCRVMGLTWGFLDAS------I- 135 (169)
Q Consensus 67 ~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~-n~~~~~~~~l~~~~~~~~------~- 135 (169)
..++||++|=-|++.|+- +..+++.|++|++++.++ +-++.+...+.. .+........+..+.... .
T Consensus 10 ~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~--~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 87 (269)
T d1xu9a_ 10 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK--ETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAG 87 (269)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHH
Confidence 347899999999998843 345566799999999984 566666555443 333332222222111100 0
Q ss_pred -CCCCCcEEEEcCcCCCC
Q 030935 136 -FDLNPNIILGADVFYDA 152 (169)
Q Consensus 136 -~~~~fDlIi~sd~iy~~ 152 (169)
.....|+++.+-..+..
T Consensus 88 ~~~g~~~~li~nag~~~~ 105 (269)
T d1xu9a_ 88 KLMGGLDMLILNHITNTS 105 (269)
T ss_dssp HHHTSCSEEEECCCCCCC
T ss_pred HHhCCccccccccccccc
Confidence 01367888877666543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=88.66 E-value=0.77 Score=30.73 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=28.4
Q ss_pred CCCCCeEEEECCC-CCHHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 68 RFSGANVVELGAG-TSLPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
..+|.+||=.||| .|+..+.+++ +|+ +|+++|.++ +-++.++
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~--~k~~~~~ 74 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE--EKLKLAE 74 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH--HHHHHHH
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchh--HHHHHHh
Confidence 4578899999987 4455555554 576 789999984 3444444
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=88.59 E-value=0.4 Score=34.94 Aligned_cols=110 Identities=8% Similarity=-0.032 Sum_probs=61.6
Q ss_pred chHHHHHHHHHhccCCCCCCeEEEECCCCCHHHHHHHHhCC---------------------------------------
Q 030935 53 PCSVILAEYVWQQRYRFSGANVVELGAGTSLPGLVAAKVGS--------------------------------------- 93 (169)
Q Consensus 53 ~~~~~La~~l~~~~~~~~~~~vLElGcGtGl~~l~~a~~ga--------------------------------------- 93 (169)
.++.+|+.-+... .-..+..++|--||+|.+.+.+|....
T Consensus 34 Laa~il~~al~l~-~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~ 112 (249)
T d1o9ga_ 34 LATEIFQRALARL-PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERR 112 (249)
T ss_dssp HHHHHHHHHHHTS-SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhh-cCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhcccc
Confidence 4556666555322 222334699999999999998776421
Q ss_pred ---eEEEEcCCCcHHHHHHH---HHHHHHhCCcceEEEEEcCCCCcC------CCCCCCcEEEEcCcCC-----CCC---
Q 030935 94 ---NVTLTDDSNRIEVLKNM---RRVCEMNKLNCRVMGLTWGFLDAS------IFDLNPNIILGADVFY-----DAS--- 153 (169)
Q Consensus 94 ---~V~~~D~~~~~~~l~~~---~~n~~~n~~~~~~~~l~~~~~~~~------~~~~~fDlIi~sd~iy-----~~~--- 153 (169)
++++.|++ +++++.+ ++|++..++...+. +...+.... ..+..+++||++.+.= ...
T Consensus 113 ~~~~i~G~D~d--~~ai~~A~~~r~n~~~Agl~~~i~-i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~ 189 (249)
T d1o9ga_ 113 EQSERFGKPSY--LEAAQAARRLRERLTAEGGALPCA-IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPG 189 (249)
T ss_dssp HHHHHHCCHHH--HHHHHHHHHHHHHHHHTTSSCCEE-EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCH
T ss_pred ccCCccccccC--HHHHHHHHHHHHHHHHcCCCceee-eeecchhccCcchhccCCCCCCEEEeCCCccccccccccchH
Confidence 23455555 4466666 45777777764332 322332211 1234679999865431 111
Q ss_pred -ChHHHHHHHHHhc
Q 030935 154 -GKICAFEILICSL 166 (169)
Q Consensus 154 -~~~~l~~~l~~~L 166 (169)
.+..+...+++.+
T Consensus 190 ~~~~~~~~~l~~~~ 203 (249)
T d1o9ga_ 190 QPVAGLLRSLASAL 203 (249)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccC
Confidence 2455666666655
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=88.43 E-value=2.1 Score=28.53 Aligned_cols=42 Identities=19% Similarity=0.287 Sum_probs=28.6
Q ss_pred HHHhccCCCCCCeEEEECCCCCHHHH--HHHHhCCeEEEEcCCC
Q 030935 61 YVWQQRYRFSGANVVELGAGTSLPGL--VAAKVGSNVTLTDDSN 102 (169)
Q Consensus 61 ~l~~~~~~~~~~~vLElGcGtGl~~l--~~a~~ga~V~~~D~~~ 102 (169)
-+.++....+|++||=||||.-.-++ .+++.|.+|+.+..+.
T Consensus 8 ~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 8 DLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp HHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred HHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 34444445689999999998554443 3445688888888773
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.34 E-value=0.96 Score=32.38 Aligned_cols=78 Identities=9% Similarity=-0.040 Sum_probs=49.4
Q ss_pred CCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC------CCCC
Q 030935 71 GANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------FDLN 139 (169)
Q Consensus 71 ~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~------~~~~ 139 (169)
||.+|=-|++.|+ ++..+++.|++|+++|.+ ++-++.+.+.++..+.++.....+..+... .. .-.+
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~--~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARG--EEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 5667878877665 234556679999999998 457777777777776665544444433211 00 0137
Q ss_pred CcEEEEcCcCC
Q 030935 140 PNIILGADVFY 150 (169)
Q Consensus 140 fDlIi~sd~iy 150 (169)
.|++|.+-=+.
T Consensus 80 iDilVnnAG~~ 90 (257)
T d2rhca1 80 VDVLVNNAGRP 90 (257)
T ss_dssp CSEEEECCCCC
T ss_pred CCEEEeccccc
Confidence 89998664443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=88.08 E-value=0.19 Score=30.63 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCCCCeEEEECCC-CCHHH-HHHHHhCCeEEEEcCCCc
Q 030935 68 RFSGANVVELGAG-TSLPG-LVAAKVGSNVTLTDDSNR 103 (169)
Q Consensus 68 ~~~~~~vLElGcG-tGl~~-l~~a~~ga~V~~~D~~~~ 103 (169)
.++|++|+=+|.| ||... .++++.|++|++.|..+.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 4688999999887 55432 355667999999999754
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=87.37 E-value=0.97 Score=32.50 Aligned_cols=49 Identities=20% Similarity=0.309 Sum_probs=36.7
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCC
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKL 119 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~ 119 (169)
++||.+|=-|++.|+- +..+++.|++|+++|.+ ++-++.+.+.+...+.
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~--~~~l~~~~~~l~~~~~ 54 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRH--AERLEETRQQILAAGV 54 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCC
Confidence 5789999999887743 34556679999999998 4577777777766654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=87.01 E-value=0.67 Score=33.50 Aligned_cols=78 Identities=9% Similarity=0.083 Sum_probs=46.4
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++||.+|=-|++.|+- +..+++.|++|+++|.++ +-++.+.+.+...+ .+.+...+..+... ...
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~~l~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD--DHGQKVCNNIGSPD-VISFVHCDVTKDEDVRNLVDTTIAK 79 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHCCTT-TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhcCCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999999887743 234556799999999984 46666555554322 22333333332211 000
Q ss_pred CCCCcEEEEcCc
Q 030935 137 DLNPNIILGADV 148 (169)
Q Consensus 137 ~~~fDlIi~sd~ 148 (169)
-.+.|++|.+--
T Consensus 80 ~g~iD~lVnnAG 91 (268)
T d2bgka1 80 HGKLDIMFGNVG 91 (268)
T ss_dssp HSCCCEEEECCC
T ss_pred cCCcceeccccc
Confidence 137899996543
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.71 E-value=0.73 Score=31.81 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=29.7
Q ss_pred CeEEEECCCCC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHH
Q 030935 72 ANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCE 115 (169)
Q Consensus 72 ~~vLElGcGtG--l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~ 115 (169)
++|-=||+|+= .++..++..|.+|++.|.+ ++.++.+++.++
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~--~~~l~~a~~~i~ 48 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQT--EDILAKSKKGIE 48 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC--HHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECC--hHHHHHHHhhHH
Confidence 46777888732 3344556678899999999 567777666554
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=86.58 E-value=3.2 Score=27.72 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=42.3
Q ss_pred cCCCCCCeEEEECCCCCHHHHH--HHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 66 RYRFSGANVVELGAGTSLPGLV--AAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~~l~--~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
...+++++||=+|||.-.-++. +.+.+.+|+.+..+. +-.+...+++... ..+....|... ....+|+|
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~--~~a~~l~~~~~~~---~~~~~~~~~~~----~~~~~dii 83 (171)
T d1p77a1 13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF--SKTKELAERFQPY---GNIQAVSMDSI----PLQTYDLV 83 (171)
T ss_dssp TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH--HHHHHHHHHHGGG---SCEEEEEGGGC----CCSCCSEE
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH--HHHHHHHHHHhhc---cccchhhhccc----ccccccee
Confidence 3456899999999984433332 233455899988873 3444444444422 23344555432 12366777
Q ss_pred EEcCcC
Q 030935 144 LGADVF 149 (169)
Q Consensus 144 i~sd~i 149 (169)
|.+=.+
T Consensus 84 IN~tp~ 89 (171)
T d1p77a1 84 INATSA 89 (171)
T ss_dssp EECCCC
T ss_pred eecccc
Confidence 765443
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=86.47 E-value=1.2 Score=29.51 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=34.8
Q ss_pred hHHHHHHHHH-hccCCCCCCeEEEECCCCC-HHHHHHHH-hCC-eEEEEcCCCcHHHHHHHH
Q 030935 54 CSVILAEYVW-QQRYRFSGANVVELGAGTS-LPGLVAAK-VGS-NVTLTDDSNRIEVLKNMR 111 (169)
Q Consensus 54 ~~~~La~~l~-~~~~~~~~~~vLElGcGtG-l~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~ 111 (169)
++..-+.... +.....+|.+||=+|||.+ +..+.+++ .++ +|+++|.++. -++.++
T Consensus 11 ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~--rl~~a~ 70 (175)
T d1cdoa2 11 CGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPD--KFEKAK 70 (175)
T ss_dssp THHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHH
T ss_pred cHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHH--HHHHHH
Confidence 4444444444 4455668889999999874 33443333 455 7999999863 444443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.94 E-value=1.1 Score=32.90 Aligned_cols=85 Identities=14% Similarity=0.035 Sum_probs=49.9
Q ss_pred cCCCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh-----CCcceEEEEEcCCCCc--CC
Q 030935 66 RYRFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN-----KLNCRVMGLTWGFLDA--SI 135 (169)
Q Consensus 66 ~~~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n-----~~~~~~~~l~~~~~~~--~~ 135 (169)
+..++||++|=-|++.|+- +..+++.|++|+++|.++ +-++.+.+.+..+ +.++.....+..+... ..
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~--~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 84 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKL--ERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL 84 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH
Confidence 4567999999999887743 234566799999999984 4666555555433 2223222233222111 00
Q ss_pred C------CCCCcEEEEcCcCCCC
Q 030935 136 F------DLNPNIILGADVFYDA 152 (169)
Q Consensus 136 ~------~~~fDlIi~sd~iy~~ 152 (169)
. -.+.|++|.+--+...
T Consensus 85 ~~~~~~~~G~iDiLVnnAg~~~~ 107 (297)
T d1yxma1 85 VKSTLDTFGKINFLVNNGGGQFL 107 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCC
T ss_pred HHHHHHHhCCeEEEEeecccccc
Confidence 0 1378999976555443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.90 E-value=0.95 Score=32.37 Aligned_cols=80 Identities=14% Similarity=0.074 Sum_probs=46.9
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F-- 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~-- 136 (169)
.++||++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+. ..+.....+..+... .. .
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~--~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD--EEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTA 77 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHH
Confidence 4689999999988874 3345566799999999984 45554444332 223333333322111 00 0
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
-.+.|+++.+--+...
T Consensus 78 ~g~idilinnAG~~~~ 93 (244)
T d1nffa_ 78 FGGLHVLVNNAGILNI 93 (244)
T ss_dssp HSCCCEEEECCCCCCC
T ss_pred hCCCeEEEECCcccCC
Confidence 1378999976555443
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=84.80 E-value=0.93 Score=32.45 Aligned_cols=81 Identities=10% Similarity=0.041 Sum_probs=48.7
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------C
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------~ 137 (169)
++||++|=-|++.|+- +..+++.|++|+++|.+ ++.++.+.+.+.. +.++.+...+..+... ... -
T Consensus 4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~--~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRH--SDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 6899999999877743 34556679999999998 4567766665542 2233333333332111 000 1
Q ss_pred CCCcEEEEcCcCCCC
Q 030935 138 LNPNIILGADVFYDA 152 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~ 152 (169)
.+.|++|.+--+...
T Consensus 81 G~iDiLVnnAg~~~~ 95 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVN 95 (251)
T ss_dssp SSCCEEEECCCCCCC
T ss_pred CCceEEEeccccccc
Confidence 378999976655433
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.53 E-value=1.8 Score=30.87 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=46.1
Q ss_pred EEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--CCCCcE
Q 030935 74 VVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F--DLNPNI 142 (169)
Q Consensus 74 vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~--~~~fDl 142 (169)
+|=-|++.|+- +..+++.|++|+++|.+ ++-++.+.+.++..+.++.....|..+... .. . -.+.|+
T Consensus 4 alITGas~GIG~aia~~la~~Ga~V~~~~r~--~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYN--DATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEcCCccHHHHHHHHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 46678776642 33456679999999998 457777777777776665444444433211 00 0 137899
Q ss_pred EEEcCcCC
Q 030935 143 ILGADVFY 150 (169)
Q Consensus 143 Ii~sd~iy 150 (169)
+|.+-=+.
T Consensus 82 lVnnAG~~ 89 (255)
T d1gega_ 82 IVNNAGVA 89 (255)
T ss_dssp EEECCCCC
T ss_pred EEeccccc
Confidence 99654443
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.22 E-value=1.2 Score=31.62 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=44.5
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCCC--CCCc
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIFD--LNPN 141 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~~--~~fD 141 (169)
++||++|=-|++.|+ ++..+++.|++|+++|.++ +-++.+.+.+ ..+.....+..+... .... .+.|
T Consensus 3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~--~~l~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~g~iD 76 (242)
T d1cyda_ 3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN--SDLVSLAKEC----PGIEPVCVDLGDWDATEKALGGIGPVD 76 (242)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHS----TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHhc----CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence 689999999988774 2345566799999999984 3444333222 123333333333211 0111 3789
Q ss_pred EEEEcCcCCC
Q 030935 142 IILGADVFYD 151 (169)
Q Consensus 142 lIi~sd~iy~ 151 (169)
++|.+--+..
T Consensus 77 ilVnnAg~~~ 86 (242)
T d1cyda_ 77 LLVNNAALVI 86 (242)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCcccc
Confidence 9996654443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=84.19 E-value=0.92 Score=30.16 Aligned_cols=91 Identities=14% Similarity=-0.029 Sum_probs=48.3
Q ss_pred CeEEEECCCCC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHh--CCcceEEEEEcCCCC-cCCC--CCCCcEEE
Q 030935 72 ANVVELGAGTS--LPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMN--KLNCRVMGLTWGFLD-ASIF--DLNPNIIL 144 (169)
Q Consensus 72 ~~vLElGcGtG--l~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n--~~~~~~~~l~~~~~~-~~~~--~~~fDlIi 144 (169)
++|-=+|+|.- .++..+++.|.+|++.|.++ +-++.++.+-... ...... ....... .... -...|+|+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~e~~~~aD~ii 77 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA--QRIKEIQDRGAIIAEGPGLAG--TAHPDLLTSDIGLAVKDADVIL 77 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHHHTSEEEESSSCCE--EECCSEEESCHHHHHTTCSEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHcCCCchhhhhhhh--hhhhhhhhhhhHhHhcCCCEEE
Confidence 56677888743 34456667889999999983 4555544321100 000000 0000000 0000 13679998
Q ss_pred EcCcCCCCCChHHHHHHHHHhccCC
Q 030935 145 GADVFYDASGKICAFEILICSLFPI 169 (169)
Q Consensus 145 ~sd~iy~~~~~~~l~~~l~~~L~p~ 169 (169)
.+-. ....+.+++.++..|+|+
T Consensus 78 i~v~---~~~~~~~~~~i~~~l~~~ 99 (184)
T d1bg6a2 78 IVVP---AIHHASIAANIASYISEG 99 (184)
T ss_dssp ECSC---GGGHHHHHHHHGGGCCTT
T ss_pred EEEc---hhHHHHHHHHhhhccCCC
Confidence 7533 334677888888877663
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=83.79 E-value=1.2 Score=31.98 Aligned_cols=88 Identities=11% Similarity=0.034 Sum_probs=48.5
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEE-cCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCC--CcCCC------
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLT-DDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFL--DASIF------ 136 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~-D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~--~~~~~------ 136 (169)
++||+||=-|++.|+- +..+++.|++|+++ +..+. . +.+.+-...+ ....+....++.. .....
T Consensus 3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~--~-~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~ 78 (254)
T d1sbya1 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN--P-TALAELKAIN-PKVNITFHTYDVTVPVAESKKLLKKI 78 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC--H-HHHHHHHHHC-TTSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCccc--H-HHHHHHHhhC-CCCCEEEEEeecCCCHHHHHHHHHHH
Confidence 6899999999988862 33445578887666 44432 2 2222212222 2222332333221 11110
Q ss_pred ---CCCCcEEEEcCcCCCCCChHHHHH
Q 030935 137 ---DLNPNIILGADVFYDASGKICAFE 160 (169)
Q Consensus 137 ---~~~fDlIi~sd~iy~~~~~~~l~~ 160 (169)
-.+.|++|.+--.+..+.++..++
T Consensus 79 ~~~~g~iDilvnnAG~~~~~~~~~~~~ 105 (254)
T d1sbya1 79 FDQLKTVDILINGAGILDDHQIERTIA 105 (254)
T ss_dssp HHHHSCCCEEEECCCCCCTTCHHHHHH
T ss_pred HHHcCCCCEEEeCCCCCCHHHHHHHHH
Confidence 137899998877777777776554
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.73 E-value=1.2 Score=31.62 Aligned_cols=80 Identities=16% Similarity=0.077 Sum_probs=46.8
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC------CC
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI------FD 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~------~~ 137 (169)
++||++|=-|++.|+- +..+++.|++|+++|.++ +-++.+.+.+.. +......+..+... .. .-
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~--~~l~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE--NGAQAISDYLGA---NGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH--HHHHHHHHHHGG---GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH--HHHHHHHHHhCC---CCcEEEEEecCHHHhhhhhhhhhccc
Confidence 5789999999887752 334556799999999984 466555444432 22333333332111 00 01
Q ss_pred CCCcEEEEcCcCCCCC
Q 030935 138 LNPNIILGADVFYDAS 153 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~ 153 (169)
.+.|++|.+--+....
T Consensus 77 g~iDilVnnAg~~~~~ 92 (243)
T d1q7ba_ 77 GEVDILVNNAGITRDN 92 (243)
T ss_dssp CSCSEEEECCCCCCCC
T ss_pred CCcceehhhhhhcccc
Confidence 3789999765554443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.49 E-value=1.5 Score=27.68 Aligned_cols=47 Identities=28% Similarity=0.436 Sum_probs=34.4
Q ss_pred CeEEEECCCCCHHHH----HHHHhCCeEEEEcCCCc------HHHHHHHHHHHHHhCCc
Q 030935 72 ANVVELGAGTSLPGL----VAAKVGSNVTLTDDSNR------IEVLKNMRRVCEMNKLN 120 (169)
Q Consensus 72 ~~vLElGcGtGl~~l----~~a~~ga~V~~~D~~~~------~~~l~~~~~n~~~n~~~ 120 (169)
++++=+|+| .+|+ .++++|.+|+.++..++ +++.+.+++.++.++++
T Consensus 24 ~~~vIiG~G--~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~ 80 (122)
T d1v59a2 24 KRLTIIGGG--IIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLD 80 (122)
T ss_dssp SEEEEECCS--HHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCC--chHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccce
Confidence 577777665 4554 44557999999998763 46778888888888864
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.35 E-value=0.85 Score=29.96 Aligned_cols=32 Identities=28% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCeEEEECCC-CCHH-HHHHHHhCCeEEEEcCCC
Q 030935 71 GANVVELGAG-TSLP-GLVAAKVGSNVTLTDDSN 102 (169)
Q Consensus 71 ~~~vLElGcG-tGl~-~l~~a~~ga~V~~~D~~~ 102 (169)
+++||=+|+| .|.. +..|++.|.+|++.|.+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 5788889986 4422 234555688999999984
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=82.94 E-value=3.8 Score=26.68 Aligned_cols=80 Identities=15% Similarity=0.012 Sum_probs=43.3
Q ss_pred EEEECCC--CCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEEEEcCcCCC
Q 030935 74 VVELGAG--TSLPGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNIILGADVFYD 151 (169)
Q Consensus 74 vLElGcG--tGl~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlIi~sd~iy~ 151 (169)
|.=+|+| -+.++..+.+.|.+|++.|.+ ++.++.+++ .+.-... .... +. -...|+|+.+=.
T Consensus 3 I~iIG~G~mG~~lA~~l~~~g~~V~~~d~~--~~~~~~a~~----~~~~~~~----~~~~-~~--~~~~DiIilavp--- 66 (165)
T d2f1ka2 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQ--QSTCEKAVE----RQLVDEA----GQDL-SL--LQTAKIIFLCTP--- 66 (165)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSC--HHHHHHHHH----TTSCSEE----ESCG-GG--GTTCSEEEECSC---
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECC--chHHHHHHH----hhcccee----eeec-cc--ccccccccccCc---
Confidence 4445554 223334455568899999998 345555443 3321111 1111 11 136799886433
Q ss_pred CCChHHHHHHHHHhccCC
Q 030935 152 ASGKICAFEILICSLFPI 169 (169)
Q Consensus 152 ~~~~~~l~~~l~~~L~p~ 169 (169)
....+.+++.+...|+|.
T Consensus 67 ~~~~~~vl~~l~~~l~~~ 84 (165)
T d2f1ka2 67 IQLILPTLEKLIPHLSPT 84 (165)
T ss_dssp HHHHHHHHHHHGGGSCTT
T ss_pred Hhhhhhhhhhhhhhcccc
Confidence 245667777777777663
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.62 E-value=0.5 Score=35.12 Aligned_cols=34 Identities=21% Similarity=0.299 Sum_probs=25.2
Q ss_pred CCCeEEEECCC-CCHHHH-HHHHhCCeEEEEcCCCc
Q 030935 70 SGANVVELGAG-TSLPGL-VAAKVGSNVTLTDDSNR 103 (169)
Q Consensus 70 ~~~~vLElGcG-tGl~~l-~~a~~ga~V~~~D~~~~ 103 (169)
+.++|+=|||| +|+.+. .|++.|.+|++.|.++.
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 35789999999 555443 44567889999999863
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=82.56 E-value=1 Score=33.25 Aligned_cols=83 Identities=17% Similarity=0.170 Sum_probs=48.7
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCc-------HHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNR-------IEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI 135 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~-------~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~ 135 (169)
.++||++|=-|++.|+- +..+++.|++|+++|.+.. .+.++...+.+...+... ..+..+... ..
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~~~~~~~~ 80 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKA---VANYDSVEAGEKL 80 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEE---EEECCCGGGHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhccccc---ccccchHHHHHHH
Confidence 46899999999998843 4456678999999987531 123444444444444332 233333211 00
Q ss_pred ------CCCCCcEEEEcCcCCCCC
Q 030935 136 ------FDLNPNIILGADVFYDAS 153 (169)
Q Consensus 136 ------~~~~fDlIi~sd~iy~~~ 153 (169)
.-.+.|++|.+-=++...
T Consensus 81 v~~~~~~~G~iDiLVnNAGi~~~~ 104 (302)
T d1gz6a_ 81 VKTALDTFGRIDVVVNNAGILRDR 104 (302)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCC
T ss_pred HHHHHHHcCCCCEEEECCccCCCC
Confidence 113789999776555443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.08 E-value=1.7 Score=30.87 Aligned_cols=79 Identities=15% Similarity=0.197 Sum_probs=46.1
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC--CCCC
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF--DLNP 140 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~--~~~f 140 (169)
.++||++|=-|++.|+- +..+++.|++|+++|.++ +-++.+.+.+. .......+..+... ... -.+.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~--~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~g~i 77 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ--ADLDSLVRECP----GIEPVCVDLGDWEATERALGSVGPV 77 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHHHST----TCEEEECCTTCHHHHHHHHTTCCCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH--HHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHHhCCc
Confidence 35899999999887743 345566799999999984 34544433221 22333333332211 011 1378
Q ss_pred cEEEEcCcCCCC
Q 030935 141 NIILGADVFYDA 152 (169)
Q Consensus 141 DlIi~sd~iy~~ 152 (169)
|++|.+--+...
T Consensus 78 DilVnnAg~~~~ 89 (244)
T d1pr9a_ 78 DLLVNNAAVALL 89 (244)
T ss_dssp CEEEECCCCCCC
T ss_pred eEEEeccccccc
Confidence 999976655443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.83 E-value=1.6 Score=31.12 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=31.1
Q ss_pred CCCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHH
Q 030935 68 RFSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRV 113 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n 113 (169)
.++||++|=-|++.|+ ++..+++.|++|+++|.++ +.++.+.+.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~--~~~~~~~~~ 49 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE--AAGQQLAAE 49 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH--HHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHHH
Confidence 4689999999987763 2334556799999999984 455554443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.59 E-value=1.8 Score=30.82 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=31.3
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHH
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
.++||++|=-|++.|+- +..+++.|++|+++|.++ +.++.+++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~~~~~~~ 48 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE--SGGRALEQ 48 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHH
Confidence 46899999999887742 345566799999999984 45555443
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.53 E-value=2.7 Score=29.73 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=35.6
Q ss_pred CCCCCeEEEECCCCCHHHHH----HHH---hCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceE
Q 030935 68 RFSGANVVELGAGTSLPGLV----AAK---VGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRV 123 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~~l~----~a~---~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~ 123 (169)
.++||.+|=-|++.|+ |.. +|+ .|++|++++.+ ++-++.+.+.+...+...++
T Consensus 3 ~L~gKvalITGas~GI-G~aiA~~lA~~~~~G~~Vv~~~r~--~~~l~~~~~~l~~~~~~~~~ 62 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGF-GRALAPQLARLLSPGSVMLVSARS--ESMLRQLKEELGAQQPDLKV 62 (259)
T ss_dssp CCBSEEEEESSCSSHH-HHHHHHHHHTTBCTTCEEEEEESC--HHHHHHHHHHHHHHCTTSEE
T ss_pred CCCCCEEEEeCCCCHH-HHHHHHHHHhcccCCCEEEEEECC--HHHHHHHHHHHHhhcCCceE
Confidence 3567777777888775 433 343 47899999998 45777777777665544343
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=81.53 E-value=1.7 Score=31.13 Aligned_cols=80 Identities=16% Similarity=0.085 Sum_probs=46.3
Q ss_pred CCCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CCC------
Q 030935 68 RFSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SIF------ 136 (169)
Q Consensus 68 ~~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~~------ 136 (169)
.++||++|=-|++.|+- +..+++.|++|+++|.++ +-++.+. +..+..+.....+..+... ...
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~--~~~~~~~---~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD--EEGAATA---RELGDAARYQHLDVTIEEDWQRVVAYAREE 76 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH---HTTGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHH---HHhCCceEEEEcccCCHHHHHHHHHHHHHH
Confidence 46899999999988743 445566799999999984 3443332 2222333333333332111 000
Q ss_pred CCCCcEEEEcCcCCCC
Q 030935 137 DLNPNIILGADVFYDA 152 (169)
Q Consensus 137 ~~~fDlIi~sd~iy~~ 152 (169)
-.+.|++|.+--+...
T Consensus 77 ~g~iDilVnnAg~~~~ 92 (254)
T d1hdca_ 77 FGSVDGLVNNAGISTG 92 (254)
T ss_dssp HSCCCEEEECCCCCCC
T ss_pred cCCccEEEecCccccc
Confidence 1378988866555543
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=81.31 E-value=1.4 Score=29.43 Aligned_cols=70 Identities=11% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCCCCCeEEEECCC-CC-HHHHHHHHhCC-eEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCcCCCCCCCcEE
Q 030935 67 YRFSGANVVELGAG-TS-LPGLVAAKVGS-NVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDASIFDLNPNII 143 (169)
Q Consensus 67 ~~~~~~~vLElGcG-tG-l~~l~~a~~ga-~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~~~~~~~fDlI 143 (169)
..+++++||=+|+| .| .+...+...|. +++.+--+. +.++.-.+..+.. ...|.+..+.. ..+|+|
T Consensus 20 ~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~-----~ka~~l~~~~~~~----~~~~~~~~~~l--~~~Div 88 (159)
T d1gpja2 20 GSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY-----ERAVELARDLGGE----AVRFDELVDHL--ARSDVV 88 (159)
T ss_dssp SCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH-----HHHHHHHHHHTCE----ECCGGGHHHHH--HTCSEE
T ss_pred CCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcH-----HHHHHHHHhhhcc----cccchhHHHHh--ccCCEE
Confidence 45688999999986 23 23334555787 688888763 2222222223322 13344332211 278999
Q ss_pred EEcC
Q 030935 144 LGAD 147 (169)
Q Consensus 144 i~sd 147 (169)
|++=
T Consensus 89 i~at 92 (159)
T d1gpja2 89 VSAT 92 (159)
T ss_dssp EECC
T ss_pred EEec
Confidence 9763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=81.13 E-value=1.2 Score=28.27 Aligned_cols=32 Identities=28% Similarity=0.369 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHH----hCCeEEEEcCCCcHHHHHHHHH
Q 030935 79 AGTSLPGLVAAK----VGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 79 cGtGl~~l~~a~----~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
||.|.+|..+++ .|.+|+++|.+ ++.++.++.
T Consensus 6 ~G~G~~G~~la~~L~~~g~~v~vid~d--~~~~~~~~~ 41 (132)
T d1lssa_ 6 AGIGRVGYTLAKSLSEKGHDIVLIDID--KDICKKASA 41 (132)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHCCCCcceecCC--hhhhhhhhh
Confidence 455777776665 47799999999 557766544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=81.00 E-value=2.7 Score=29.73 Aligned_cols=81 Identities=9% Similarity=-0.004 Sum_probs=47.4
Q ss_pred CCCCeEEEECCCCCH---HHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHhCCcceEEEEEcCCCCc--CC----C--C
Q 030935 69 FSGANVVELGAGTSL---PGLVAAKVGSNVTLTDDSNRIEVLKNMRRVCEMNKLNCRVMGLTWGFLDA--SI----F--D 137 (169)
Q Consensus 69 ~~~~~vLElGcGtGl---~~l~~a~~ga~V~~~D~~~~~~~l~~~~~n~~~n~~~~~~~~l~~~~~~~--~~----~--~ 137 (169)
++||.+|=-|++.|+ ++..+++.|++|+++|.++. + .++..++..+.++.....+..+... .. . -
T Consensus 3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-~---~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA-P---EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-H---HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch-H---HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 578999989987764 23455667999999999864 2 2223344445544444444333211 00 0 1
Q ss_pred CCCcEEEEcCcCCCCC
Q 030935 138 LNPNIILGADVFYDAS 153 (169)
Q Consensus 138 ~~fDlIi~sd~iy~~~ 153 (169)
.+.|++|.+-=++...
T Consensus 79 G~iDilVnnAG~~~~~ 94 (247)
T d2ew8a1 79 GRCDILVNNAGIYPLI 94 (247)
T ss_dssp SCCCEEEECCCCCCCC
T ss_pred CCCCEEEECCCCCCCC
Confidence 3789999765555443
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=80.56 E-value=2.7 Score=28.29 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=26.4
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHH--HHHHhCC-eEEEEcCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGL--VAAKVGS-NVTLTDDSN 102 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l--~~a~~ga-~V~~~D~~~ 102 (169)
+.+....+++++||=||||.-.-++ .+++.|. +++..+.++
T Consensus 9 l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 9 IKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 52 (182)
T ss_dssp HHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred HHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence 4434345688999999998332233 3344566 788888764
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| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=80.28 E-value=2.2 Score=30.79 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=30.0
Q ss_pred CCCCeEEEECCCCCHH---HHHHHHhCCeEEEEcCCCcHHHHHHHHH
Q 030935 69 FSGANVVELGAGTSLP---GLVAAKVGSNVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 69 ~~~~~vLElGcGtGl~---~l~~a~~ga~V~~~D~~~~~~~l~~~~~ 112 (169)
++||++|=-|++.|+- +..+++.|++|+++|.++ +-++.+.+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~l~~~~~ 47 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA--ERLAELET 47 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHHH
Confidence 4789999999877742 345566799999999984 45554443
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| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.18 E-value=4 Score=27.16 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=26.2
Q ss_pred HHhccCCCCCCeEEEECCCCCHHHHHHHHhC-CeEEEEcCCC
Q 030935 62 VWQQRYRFSGANVVELGAGTSLPGLVAAKVG-SNVTLTDDSN 102 (169)
Q Consensus 62 l~~~~~~~~~~~vLElGcGtGl~~l~~a~~g-a~V~~~D~~~ 102 (169)
+.++...+++++||=||+|.-.-++..+..+ .+|+....+.
T Consensus 9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~~i~I~nR~~ 50 (177)
T d1nvta1 9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTV 50 (177)
T ss_dssp HHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSSEEEEECSSH
T ss_pred HHHhCCCcCCCEEEEECCcHHHHHHHHHHccccceeeehhhh
Confidence 3344455789999999998443344333332 3888888873
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=80.17 E-value=3.1 Score=27.49 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=34.8
Q ss_pred chHHHHHHHHH-hccCCCCCCeEEEECCCCC-HHHHHHHH-hCC-eEEEEcCCCcHHHHHHHHH
Q 030935 53 PCSVILAEYVW-QQRYRFSGANVVELGAGTS-LPGLVAAK-VGS-NVTLTDDSNRIEVLKNMRR 112 (169)
Q Consensus 53 ~~~~~La~~l~-~~~~~~~~~~vLElGcGtG-l~~l~~a~-~ga-~V~~~D~~~~~~~l~~~~~ 112 (169)
+++..-+.... +.....+|.+||=+|||.+ +..+.+++ .|+ +|+++|.++. -.+.+++
T Consensus 10 ~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~--k~~~a~~ 71 (176)
T d2jhfa2 10 GCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKD--KFAKAKE 71 (176)
T ss_dssp GTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG--GHHHHHH
T ss_pred hcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHH--HHHHHHH
Confidence 34444444443 4445668899999999732 33333333 454 8999999964 4444443
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