Citrus Sinensis ID: 030946

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MIKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccEEcHHHHHHHHHccccEEEEcccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEEccccccccccccccccccHHHHHHHHHHHccccccEEccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHcccccccHHHHHHHHHcccEEEEEcccHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEEEccccccccccccccccccHHHHHHHHHHHcccccEHHHccHHHHHHHccccccccc
Coil and Loop (DISEMBL)
MIKLSLWIKSVEVFYLLQVRSVEAKEALRLQKennfvildvrpeaefkeahppgaiNVQIYRLIKEWTAWDIARRAAFAFFgifsgteenpefLQTGVESQLDKDAKIIVACAtggtmkpsqnlpegqqSRSLIAAYLLVLNGYKnvyhlegglykwfkeelpevsee
Flexible Loop (DISEMBL)
miklslwiksvEVFYLLQVRSVEAKEalrlqkennfVILDVRpeaefkeahppgaiNVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATggtmkpsqnlpegqQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Low Complexity Region (SEG)
MIKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDiarraafaffgifSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Disordered region (IsUnstruct)
**KLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATG****************SLIAAYLLVLNGYKNVYHLEGGLYKWFK*********
Disordered Region (DISOPRED)
*IKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE****
Disordered Region (DISEMBL)
MIKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Disordered Region (DISPRO)
MIKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKLSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q94A65	224	Rhodanese-like domain-con	yes	no	0.928	0.696	0.770	7e-69
Q9SR92	214	Rhodanese-like domain-con	no	no	0.75	0.588	0.287	2e-08
P27626	183	Senescence-associated pro	N/A	no	0.535	0.491	0.317	9e-07
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.541	0.758	0.32	2e-06
O48529	234	Rhodanese-like domain-con	no	no	0.726	0.521	0.276	2e-06
Q0WWT7	292	Rhodanese-like domain-con	no	no	0.773	0.445	0.308	9e-06
Q38853	182	Rhodanese-like domain-con	no	no	0.535	0.494	0.293	3e-05
Q59WH7	438	Adenylyltransferase and s	N/A	no	0.535	0.205	0.289	0.0002
Q60359	222	Uncharacterized protein M	yes	no	0.714	0.540	0.305	0.0005
A5UHG8	105	Thiosulfate sulfurtransfe	yes	no	0.482	0.771	0.275	0.0005

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score =  259 bits (661), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W +  E+    +VRSV+ KEA RLQKENNFVILDVRPEAE+K  HPPGAINV++YRLI+E
Sbjct: 62  WRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIRE 121

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARR  FAFFGIFSGTEENPEF+Q+ VE++LDK+AKIIVAC++ GTMKP+QNLPE
Sbjct: 122 WTAWDIARRLGFAFFGIFSGTEENPEFIQS-VEAKLDKEAKIIVACSSAGTMKPTQNLPE 180

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
           GQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP
Sbjct: 181 GQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLP 217

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR92|STR10_ARATH Rhodanese-like domain-containing protein 10 OS=Arabidopsis thaliana GN=STR10 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 34/160 (21%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY---------RLIKEWT 68
           +VR+VE KEA  +     +++LDVRP  E ++A   G+++V ++          L+K+W 
Sbjct: 44  KVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPITLLKKWI 103

Query: 69  AWDIARRAAFAFFGIFSG---TEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLP 125
                      + G+++G   T  N EF    VE+  DK++K++V C             
Sbjct: 104 --------HLGYIGLWTGQRFTMINDEFALRVVEAVPDKESKVLVVC------------- 142

Query: 126 EGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 165
            G+  RSL A   L   GYK++  L GG  +  + + PE+
Sbjct: 143 -GEGLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 36/126 (28%)

Query: 39  LDVRPEAEFKEAHPPGAINVQ-IYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97
           LDVR   EF   HP  AINV  +YR                    + SG  +NP FL+  
Sbjct: 90  LDVRTPDEFSIGHPSRAINVPYMYR--------------------VGSGMVKNPSFLRQ- 128

Query: 98  VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157
           V S   K  +II+ C +G               RSL+A+  L+  G+  V  + GG   W
Sbjct: 129 VSSHFRKHDEIIIGCESG--------------ERSLMASTELLTAGFTGVTDIAGGYVPW 174

Query: 158 FKEELP 163
            + ELP
Sbjct: 175 TENELP 180

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 50/125 (40%), Gaps = 34/125 (27%)

Query: 39  LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV 98
           LDVR   EF + H  GAINV                R A       SG  +NP+FL+  V
Sbjct: 27  LDVRTPEEFSQGHACGAINVPYM------------NRGA-------SGMSKNPDFLEQ-V 66

Query: 99  ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158
            S   +   IIV C +GG              RS+ A   L+  G+  V  + GG   W 
Sbjct: 67  SSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWA 112

Query: 159 KEELP 163
           K  LP
Sbjct: 113 KNGLP 117

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|O48529|STR9_ARATH Rhodanese-like domain-containing protein 9, chloroplastic OS=Arabidopsis thaliana GN=STR9 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 71/141 (50%), Gaps = 19/141 (13%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           +++ V A+EA +L  E  + ++DVR + +F+ AH     ++ ++   ++     I +R  
Sbjct: 48  ELKFVNAEEAKQLIAEEGYSVVDVRDKTQFERAHIKSCSHIPLFIYNEDNDIGTIIKRTV 107

Query: 78  F-AFFGIFSG---TEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 133
              F G+F G   T+ NPEFL++ V ++  +D+K+++ C  G               RS 
Sbjct: 108 HNNFSGLFFGLPFTKVNPEFLKS-VRNEFSQDSKLLLVCQEG--------------LRSA 152

Query: 134 IAAYLLVLNGYKNVYHLEGGL 154
            AA  L   GY+N+  +  GL
Sbjct: 153 AAASRLEEAGYENIACVTSGL 173

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WWT7|STR11_ARATH Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 19/149 (12%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR-A 76
           +V+ +  +EA      +N  +LDVRP +E  +A   G+  V I+       A  ++++  
Sbjct: 87  KVKLLTPREAGYAISLSNKPLLDVRPSSERNKAWIKGSTWVPIFDNDDNLDAGTLSKKVT 146

Query: 77  AFAFFGIFSGTEE---NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 133
           +FA  G +SG      N  FL + VE +  KD+++IVAC  G               RSL
Sbjct: 147 SFAMGGWWSGAPTLSFNRLFL-SKVEEKFPKDSELIVACQKG--------------LRSL 191

Query: 134 IAAYLLVLNGYKNVYHLEGGLYKWFKEEL 162
            A  LL   GY+N++ ++GGL     E+L
Sbjct: 192 AACELLYNAGYENLFWVQGGLESAQDEDL 220

Arabidopsis thaliana (taxid: 3702)

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 36/126 (28%)

Query: 39  LDVRPEAEFKEAHPPGAINVQ-IYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97
           LDVR   EF   HP  AINV  +YR                    + SG  +NP FL+  
Sbjct: 89  LDVRTPDEFSIGHPTRAINVPYMYR--------------------VGSGMVKNPSFLRQ- 127

Query: 98  VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157
           V S   K  +II+ C +G                S +A+  L+  G+  +  + GG   W
Sbjct: 128 VSSHFRKHDEIIIGCESG--------------QMSFMASTDLLTAGFTAITDIAGGYVAW 173

Query: 158 FKEELP 163
            + ELP
Sbjct: 174 TENELP 179

Arabidopsis thaliana (taxid: 3702)

>sp|Q59WH7|UBA4_CANAL Adenylyltransferase and sulfurtransferase UBA4 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=UBA4 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 38/128 (29%)

Query: 30  LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE 89
           +Q +   +++DVRP  +F+  H P AINVQ          WD   R A A          
Sbjct: 338 VQNKKKHILIDVRPREQFQITHLPNAINVQ----------WDPTFRKADA---------- 377

Query: 90  NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149
               ++  +     KD +I V C  G              + S +AA  L+  GY NV  
Sbjct: 378 ----IEQYLPDDSTKDDEIYVVCRFG--------------NDSQLAAKKLIGMGYPNVRD 419

Query: 150 LEGGLYKW 157
           + GGL KW
Sbjct: 420 IIGGLDKW 427

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Acts by mediating the C-terminal thiocarboxylation of sulfur carrier URM1. Its N-terminus first activates URM1 as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 to form thiocarboxylation (-COSH) of its C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. May also be involved in protein urmylation.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: -

>sp|Q60359|Y052_METJA Uncharacterized protein MJ0052 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0052 PE=4 SV=1

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 63/144 (43%), Gaps = 24/144 (16%)

Query: 21  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY-----RLIKEWTAWDIARR 75
           ++   E L L K+ + +I+D R   EFKE   PGAIN+ ++      LI +    +   +
Sbjct: 93  TITVSELLELIKKEDVIIVDTRSPREFKEETLPGAINIPLFLDDEHALIGKTYKQESREK 152

Query: 76  AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 135
           A      I +   E           +LD+D  I+V CA GG              RS   
Sbjct: 153 A----IEIATDIVEKSLKRILNEAKKLDRDKLIVVFCARGGM-------------RSQTM 195

Query: 136 AYLLVLNGYKNVYHLEGGLYKWFK 159
           A +L L G+K V  L GG +K FK
Sbjct: 196 ALILQLLGFK-VKRLIGG-FKAFK 217

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|A5UHG8|GLPE_HAEIG Thiosulfate sulfurtransferase GlpE OS=Haemophilus influenzae (strain PittGG) GN=glpE PE=3 SV=1

 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 49/127 (38%), Gaps = 46/127 (36%)

Query: 37  VILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 96
           +++D+R    F  +HP GA ++                               N  FLQ 
Sbjct: 20  ILVDIRDNMRFAYSHPKGAFHL------------------------------TNQSFLQ- 48

Query: 97  GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 156
             E   D D+ IIV+C              G  SR++  A  LV  GYKNV+ + GG   
Sbjct: 49  -FEELADFDSPIIVSCY------------HGVSSRNV--ATFLVEQGYKNVFSMIGGFDG 93

Query: 157 WFKEELP 163
           W + ELP
Sbjct: 94  WCRAELP 100

Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.

Haemophilus influenzae (strain PittGG) (taxid: 374931)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
449457001	237	PREDICTED: rhodanese-like domain-contain	0.958	0.679	0.845	2e-74
356552743	235	PREDICTED: uncharacterized protein LOC10	0.910	0.651	0.865	1e-73
255588548	235	conserved hypothetical protein [Ricinus	0.958	0.685	0.833	2e-73
357464055	248	Senescence-associated protein DIN1 [Medi	0.904	0.612	0.856	2e-72
357464053	232	Senescence-associated protein DIN1 [Medi	0.958	0.693	0.808	8e-72
217071574	232	unknown [Medicago truncatula]	0.958	0.693	0.802	3e-71
115480305	229	Os09g0530000 [Oryza sativa Japonica Grou	0.958	0.703	0.777	2e-69
225455288	233	PREDICTED: uncharacterized protein LOC10	0.958	0.690	0.845	8e-68
4469021	237	hypothetical protein [Arabidopsis thalia	0.928	0.658	0.770	3e-67
297799200	222	hypothetical protein ARALYDRAFT_492014 [	0.928	0.702	0.770	3e-67

>gi|449457001|ref|XP_004146237.1| PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cucumis sativus] gi|449515971|ref|XP_004165021.1| PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic-like [Cucumis sativus]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 147/162 (90%), Gaps = 1/162 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W    E+    +VRSV+A EALRLQKENNFVILDVRPEAEFKE HPPGAINVQIYRLIKE
Sbjct: 77  WKVKRELLLQKRVRSVDANEALRLQKENNFVILDVRPEAEFKEGHPPGAINVQIYRLIKE 136

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARRAAFAFFGIFSGTEENPEFLQ+ VES++DKDAKIIVAC++GGTMKP+QNLPE
Sbjct: 137 WTAWDIARRAAFAFFGIFSGTEENPEFLQS-VESKIDKDAKIIVACSSGGTMKPTQNLPE 195

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           GQQSRSLIAAYLLVLNGY NV+HLEGGLY WFKE LP VSEE
Sbjct: 196 GQQSRSLIAAYLLVLNGYANVFHLEGGLYNWFKEGLPVVSEE 237

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552743|ref|XP_003544722.1| PREDICTED: uncharacterized protein LOC100792221 [Glycine max]

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/156 (86%), Positives = 147/156 (94%), Gaps = 3/156 (1%)

Query: 15  YLLQ--VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 72
           +LLQ  VRSVE KEALRLQKEN+FV+LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI
Sbjct: 81  FLLQKRVRSVEVKEALRLQKENSFVLLDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI 140

Query: 73  ARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRS 132
           ARRAAF FFGIFSGTEENPEF++  VE+++DKDAKIIVAC +GGT++PSQNLPEGQQSRS
Sbjct: 141 ARRAAFLFFGIFSGTEENPEFIKN-VEAKIDKDAKIIVACTSGGTLRPSQNLPEGQQSRS 199

Query: 133 LIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           LIAAYLLVLNGY NV+HLEGGLYKWFKEELP VSEE
Sbjct: 200 LIAAYLLVLNGYTNVFHLEGGLYKWFKEELPTVSEE 235

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255588548|ref|XP_002534640.1| conserved hypothetical protein [Ricinus communis] gi|223524858|gb|EEF27743.1| conserved hypothetical protein [Ricinus communis]

 Score =  279 bits (714), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/162 (83%), Positives = 146/162 (90%), Gaps = 1/162 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W    E     +VRSV+ KEALRLQ+ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE
Sbjct: 75  WKVKRETLLQKKVRSVDVKEALRLQQENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 134

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARRAAFAFFGIFSGTEENPEFLQ  V+S++DK+AKIIVAC++GGTMKPSQNLPE
Sbjct: 135 WTAWDIARRAAFAFFGIFSGTEENPEFLQI-VDSKIDKNAKIIVACSSGGTMKPSQNLPE 193

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           GQQSRSLIAAYLLVLNGY NV++LEGGLY WFKE LP VSEE
Sbjct: 194 GQQSRSLIAAYLLVLNGYTNVFYLEGGLYTWFKEGLPSVSEE 235

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464055|ref|XP_003602309.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355491357|gb|AES72560.1| Senescence-associated protein DIN1 [Medicago truncatula]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 131/153 (85%), Positives = 143/153 (93%), Gaps = 1/153 (0%)

Query: 16  LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 75
           LL V+SVE KEALRLQKENNFVILDVRPEAEFKE HPP AINVQ+YRLIKEWTAWDIARR
Sbjct: 97  LLNVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKEWTAWDIARR 156

Query: 76  AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 135
           AAFAFFGIFSGTEENPEF+++ V  QLDK+AKIIVAC+ GGTMKP+QNLP+GQQSRSLIA
Sbjct: 157 AAFAFFGIFSGTEENPEFIKS-VGEQLDKNAKIIVACSAGGTMKPTQNLPQGQQSRSLIA 215

Query: 136 AYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           AYLLVLNGY NV+HLEGGLYKWFKE+LP V+EE
Sbjct: 216 AYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE 248

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464053|ref|XP_003602308.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|355491356|gb|AES72559.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388515773|gb|AFK45948.1| unknown [Medicago truncatula]

 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 131/162 (80%), Positives = 145/162 (89%), Gaps = 1/162 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W    E+    +V+SVE KEALRLQKENNFVILDVRPEAEFKE HPP AINVQ+YRLIKE
Sbjct: 72  WKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKE 131

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARRAAFAFFGIFSGTEENPEF+++ V  QLDK+AKIIVAC+ GGTMKP+QNLP+
Sbjct: 132 WTAWDIARRAAFAFFGIFSGTEENPEFIKS-VGEQLDKNAKIIVACSAGGTMKPTQNLPQ 190

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           GQQSRSLIAAYLLVLNGY NV+HLEGGLYKWFKE+LP V+EE
Sbjct: 191 GQQSRSLIAAYLLVLNGYNNVFHLEGGLYKWFKEDLPAVAEE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071574|gb|ACJ84147.1| unknown [Medicago truncatula]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 130/162 (80%), Positives = 145/162 (89%), Gaps = 1/162 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W    E+    +V+SVE KEALRLQKENNFVILDVRPEAEFKE HPP AINVQ+YRLIKE
Sbjct: 72  WKVKRELLLQKRVKSVEPKEALRLQKENNFVILDVRPEAEFKEGHPPDAINVQVYRLIKE 131

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARRAAFAFFGIFSGTEENPEF+++ V  QLDK+AKIIVAC+ GGTMKP+QNLP+
Sbjct: 132 WTAWDIARRAAFAFFGIFSGTEENPEFIKS-VGEQLDKNAKIIVACSAGGTMKPTQNLPQ 190

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           GQQSRSLIAAYLLVLNGY +V+HLEGGLYKWFKE+LP V+EE
Sbjct: 191 GQQSRSLIAAYLLVLNGYNHVFHLEGGLYKWFKEDLPAVAEE 232

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115480305|ref|NP_001063746.1| Os09g0530000 [Oryza sativa Japonica Group] gi|50725153|dbj|BAD33770.1| unknown protein [Oryza sativa Japonica Group] gi|113631979|dbj|BAF25660.1| Os09g0530000 [Oryza sativa Japonica Group] gi|215692947|dbj|BAG88367.1| unnamed protein product [Oryza sativa Japonica Group] gi|215695256|dbj|BAG90447.1| unnamed protein product [Oryza sativa Japonica Group] gi|218202498|gb|EEC84925.1| hypothetical protein OsI_32131 [Oryza sativa Indica Group] gi|222641962|gb|EEE70094.1| hypothetical protein OsJ_30096 [Oryza sativa Japonica Group]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 126/162 (77%), Positives = 142/162 (87%), Gaps = 1/162 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W    +V    +VRSV+ KEALRLQKENNF ILDVRP A+FKEAHPPGA+NVQIYRLIKE
Sbjct: 68  WKIKRQVLVEKRVRSVDVKEALRLQKENNFAILDVRPVADFKEAHPPGAVNVQIYRLIKE 127

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARRAAFAFFGIFSGTEENPEF+Q+ V+ +L KDAKIIVAC+TGGT+KP+QN P+
Sbjct: 128 WTAWDIARRAAFAFFGIFSGTEENPEFIQS-VDEKLGKDAKIIVACSTGGTLKPTQNFPD 186

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           G+QSRSLIAAYLLVLNGYKNV+HL+GGLY WFKE LP V  E
Sbjct: 187 GKQSRSLIAAYLLVLNGYKNVFHLDGGLYTWFKEGLPAVEGE 228

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455288|ref|XP_002274646.1| PREDICTED: uncharacterized protein LOC100245212 [Vitis vinifera] gi|302143949|emb|CBI23054.3| unnamed protein product [Vitis vinifera]

 Score =  261 bits (667), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 137/162 (84%), Positives = 148/162 (91%), Gaps = 1/162 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W    EV    +VRSV+AKEALRLQ+ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE
Sbjct: 73  WKIKREVLLEKKVRSVDAKEALRLQQENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 132

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARRAAFAFFGIF+GTEENPEF+Q+ VES++DK AKIIVAC++GGTMKPSQNLPE
Sbjct: 133 WTAWDIARRAAFAFFGIFAGTEENPEFMQS-VESKIDKSAKIIVACSSGGTMKPSQNLPE 191

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           GQQSRSLIAAYLLVLNGY NV+HLEGGLY WFKE LP VSEE
Sbjct: 192 GQQSRSLIAAYLLVLNGYTNVFHLEGGLYTWFKEGLPSVSEE 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4469021|emb|CAB38282.1| hypothetical protein [Arabidopsis thaliana] gi|7269624|emb|CAB81420.1| hypothetical protein [Arabidopsis thaliana]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W +  E+    +VRSV+ KEA RLQKENNFVILDVRPEAE+K  HPPGAINV++YRLI+E
Sbjct: 75  WRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIRE 134

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARR  FAFFGIFSGTEENPEF+Q+ VE++LDK+AKIIVAC++ GTMKP+QNLPE
Sbjct: 135 WTAWDIARRLGFAFFGIFSGTEENPEFIQS-VEAKLDKEAKIIVACSSAGTMKPTQNLPE 193

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
           GQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP
Sbjct: 194 GQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLP 230

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799200|ref|XP_002867484.1| hypothetical protein ARALYDRAFT_492014 [Arabidopsis lyrata subsp. lyrata] gi|297313320|gb|EFH43743.1| hypothetical protein ARALYDRAFT_492014 [Arabidopsis lyrata subsp. lyrata]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 7   WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
           W +  E+    +VRSV+ KEA RLQKENNFVILDVRPEAE+K  HPPGAINV++YRLI+E
Sbjct: 62  WRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIRE 121

Query: 67  WTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
           WTAWDIARR  FAFFGIFSGTEENPEF+Q+ VE++LDK+AKIIVAC++ GTMKP+QNLPE
Sbjct: 122 WTAWDIARRLGFAFFGIFSGTEENPEFIQS-VEAKLDKEAKIIVACSSAGTMKPTQNLPE 180

Query: 127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
           GQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP
Sbjct: 181 GQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLP 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2137792	224	AT4G27700 "AT4G27700" [Arabido	0.958	0.718	0.693	4.2e-56
UNIPROTKB|Q3AEL0	126	CHY_0566 "Rhodanese-like domai	0.273	0.365	0.412	1.1e-09
TIGR_CMR|CHY_0566	126	CHY_0566 "rhodanese-like domai	0.273	0.365	0.412	1.1e-09
UNIPROTKB|Q74F14	102	GSU0795 "Rhodanese homology do	0.255	0.421	0.340	5.2e-08
TIGR_CMR|GSU_0795	102	GSU_0795 "rhodanese-like domai	0.255	0.421	0.340	5.2e-08
UNIPROTKB|Q3Z6P8	144	DET1392 "Sulfurtransferase" [D	0.255	0.298	0.382	4.7e-07
TIGR_CMR|DET_1392	144	DET_1392 "rhodanese-like domai	0.255	0.298	0.382	4.7e-07
TAIR|locus:2097628	214	AT3G08920 "AT3G08920" [Arabido	0.767	0.602	0.280	1.1e-06
TIGR_CMR|CPS_3148	133	CPS_3148 "putative phage shock	0.315	0.398	0.314	2.4e-06
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.380	0.533	0.329	3.2e-05

TAIR|locus:2137792 AT4G27700 "AT4G27700" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 113/163 (69%), Positives = 131/163 (80%)

Query:     7 WIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKE 66
             W +  E+    +VRSV+ KEA RLQKENNFVILDVRPEAE+K  HPPGAINV++YRLI+E
Sbjct:    62 WRQKRELLLEKRVRSVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVEMYRLIRE 121

Query:    67 WTAWDXXXXXXXXXXXXXSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPE 126
             WTAWD             SGTEENPEF+Q+ VE++LDK+AKIIVAC++ GTMKP+QNLPE
Sbjct:   122 WTAWDIARRLGFAFFGIFSGTEENPEFIQS-VEAKLDKEAKIIVACSSAGTMKPTQNLPE 180

Query:   127 GQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP-EVSEE 168
             GQQSRSLIAAYLLVLNGYKNV+HLEGG+Y W KE LP E  EE
Sbjct:   181 GQQSRSLIAAYLLVLNGYKNVFHLEGGIYTWGKEGLPVETIEE 223

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|Q3AEL0 CHY_0566 "Rhodanese-like domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:    98 VESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154
             VE QL   DK+ +I+V C TG              SRS   A +LV  GYK+VY+L+GG+
Sbjct:    72 VEQQLPNIDKEQEILVVCETG--------------SRSASIAQMLVSKGYKHVYNLKGGI 117

Query:   155 YKW 157
               W
Sbjct:   118 ANW 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0566 CHY_0566 "rhodanese-like domain protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 91 (37.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 26/63 (41%), Positives = 34/63 (53%)

Query:    98 VESQL---DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154
             VE QL   DK+ +I+V C TG              SRS   A +LV  GYK+VY+L+GG+
Sbjct:    72 VEQQLPNIDKEQEILVVCETG--------------SRSASIAQMLVSKGYKHVYNLKGGI 117

Query:   155 YKW 157
               W
Sbjct:   118 ANW 120

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74F14 GSU0795 "Rhodanese homology domain superfamily protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 77 (32.2 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query:    22 VEAKEALRLQKENNF-VILDVRPEAEFKEAHPPGAINVQIYRLI 64
             + + E L+ +K NN   ++DVR   EFK  H PGA++   ++++
Sbjct:     1 MRSNELLKRRKANNPPTVIDVRTGFEFKAGHVPGAVHAPAWKIL 44

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0795 GSU_0795 "rhodanese-like domain protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 77 (32.2 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query:    22 VEAKEALRLQKENNF-VILDVRPEAEFKEAHPPGAINVQIYRLI 64
             + + E L+ +K NN   ++DVR   EFK  H PGA++   ++++
Sbjct:     1 MRSNELLKRRKANNPPTVIDVRTGFEFKAGHVPGAVHAPAWKIL 44

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z6P8 DET1392 "Sulfurtransferase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 84 (34.6 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query:    19 VRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIY 61
             V+++   EA  L   N    +F+ILDVR  +E+ + H PGA+N+  Y
Sbjct:    38 VQNISVAEAKALIDRNAVSADFIILDVRTPSEYAQGHIPGAVNLDYY 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_1392 DET_1392 "rhodanese-like domain protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 84 (34.6 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
 Identities = 18/47 (38%), Positives = 28/47 (59%)

Query:    19 VRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIY 61
             V+++   EA  L   N    +F+ILDVR  +E+ + H PGA+N+  Y
Sbjct:    38 VQNISVAEAKALIDRNAVSADFIILDVRTPSEYAQGHIPGAVNLDYY 84

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2097628 AT3G08920 "AT3G08920" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 44/157 (28%), Positives = 71/157 (45%)

Query:    18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY---------RLIKEWT 68
             +VR+VE KEA  +     +++LDVRP  E ++A   G+++V ++          L+K+W 
Sbjct:    44 KVRAVEPKEANAVVASEGYILLDVRPAWEREKARVKGSLHVPLFVEDPDNGPITLLKKWI 103

Query:    69 AWDXXXXXXXXXXXXXSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQ 128
                               T  N EF    VE+  DK++K++V C              G+
Sbjct:   104 HLGYIGLWTGQRF-----TMINDEFALRVVEAVPDKESKVLVVC--------------GE 144

Query:   129 QSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV 165
               RSL A   L   GYK++  L GG  +  + + PE+
Sbjct:   145 GLRSLAAVSKLHGEGYKSLGWLTGGFNRVSEGDFPEI 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|CPS_3148 CPS_3148 "putative phage shock protein E" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 83 (34.3 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
 Identities = 17/54 (31%), Positives = 31/54 (57%)

Query:     6 LWIKSVEVFYLLQVRSVEAKEALRLQKENNFVIL-DVRPEAEFKEAHPPGAINV 58
             +++ +V   + +  + +   E  ++ K +  VIL DVR E EF+E H P A+N+
Sbjct:    14 VFVLAVTTTWQVSAKDISQTELQQIMKNDKQVILLDVRTEEEFEEGHIPNAVNI 67

GO:0009271 "phage shock" evidence=ISS

GO:0016740 "transferase activity" evidence=ISS

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 77 (32.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
 Identities = 26/79 (32%), Positives = 35/79 (44%)

Query:    85 SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY 144
             SG  +NP+FL+  V S   +   IIV C +GG              RS+ A   L+  G+
Sbjct:    54 SGMSKNPDFLEQ-VSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGF 98

Query:   145 KNVYHLEGGLYKWFKEELP 163
               V  + GG   W K  LP
Sbjct:    99 TGVKDIVGGYSAWAKNGLP 117

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94A65	STR14_ARATH	No assigned EC number	0.7707	0.9285	0.6964	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	LOW CONFIDENCE prediction!
3rd Layer	2.8.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_32130 Os09g0529900 (566 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	2e-22
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	1e-20
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	2e-19
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	3e-17
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	5e-11
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-09
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	6e-08
cd01444	96	cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and	3e-07
COG1054	308	COG1054, COG1054, Predicted sulfurtransferase [Gen	3e-07
cd01447	103	cd01447, Polysulfide_ST, Polysulfide-sulfurtransfe	5e-07
cd01446	132	cd01446, DSP_MapKP, N-terminal regulatory rhodanes	7e-07
cd01518	101	cd01518, RHOD_YceA, Member of the Rhodanese Homolo	1e-06
PRK00142	314	PRK00142, PRK00142, putative rhodanese-related sul	1e-06
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	1e-05
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	2e-05
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	7e-05
cd01528	101	cd01528, RHOD_2, Member of the Rhodanese Homology	7e-05
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	2e-04
cd01523	100	cd01523, RHOD_Lact_B, Member of the Rhodanese Homo	3e-04
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	4e-04
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	5e-04
cd01448	122	cd01448, TST_Repeat_1, Thiosulfate sulfurtransfera	0.001
cd01521	110	cd01521, RHOD_PspE2, Member of the Rhodanese Homol	0.002
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	0.003
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	0.004

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 85.0 bits (211), Expect = 2e-22
 Identities = 38/132 (28%), Positives = 50/132 (37%), Gaps = 44/132 (33%)

Query: 26  EALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS 85
           E   L  + + V+LDVR   E+   H PGAIN+ +  L +                    
Sbjct: 1   ELKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------ 42

Query: 86  GTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145
                          +LDKD  I+V C +G               RS  AA LL   G  
Sbjct: 43  ------------ALLELDKDKPIVVYCRSGN--------------RSARAAKLLRKAGGT 76

Query: 146 NVYHLEGGLYKW 157
           NVY+LEGG+  W
Sbjct: 77  NVYNLEGGMLAW 88

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 81.0 bits (200), Expect = 1e-20
 Identities = 39/132 (29%), Positives = 55/132 (41%), Gaps = 32/132 (24%)

Query: 32  KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 91
            +   V+LDVR   E++  H PGA+N+ +  L+      DI                   
Sbjct: 1   NDEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDIL------------------ 42

Query: 92  EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151
           EF +      LDKD  ++V C +G               RS  AA+LL   G+KNVY L+
Sbjct: 43  EFEELLKRLGLDKDKPVVVYCRSGN--------------RSAKAAWLLRELGFKNVYLLD 88

Query: 152 GGLYKWFKEELP 163
           GG  +W     P
Sbjct: 89  GGYKEWSAAGPP 100

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 77.9 bits (192), Expect = 2e-19
 Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 32/138 (23%)

Query: 23  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
            A+E   L + ++ V++DVR   E+ + H PGA+N+                        
Sbjct: 1   TAEELKALLEADDVVLIDVRSPEEYAKGHIPGAVNI---------------------PLS 39

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
           + S  +   E  + G +  LDKD  I+V CA+G             Q+ +L+ A +L   
Sbjct: 40  LPSLDKLESELEELGKK--LDKDKTIVVYCASG---------NRSGQAAALLLALILKAL 88

Query: 143 GYKNVYHLEGGLYKWFKE 160
           GYKNVY L+GG   W  E
Sbjct: 89  GYKNVYVLDGGFEAWKAE 106

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 72.7 bits (178), Expect = 3e-17
 Identities = 39/152 (25%), Positives = 55/152 (36%), Gaps = 43/152 (28%)

Query: 17  LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
           L++ ++   EA  L    + V+LDVR   E++  H PGA        +K           
Sbjct: 2   LRLETISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAE-------- 53

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                                   +L  D  I+V CA+G               RS  AA
Sbjct: 54  ---------------------NLLELPDDDPIVVYCASGV--------------RSAAAA 78

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
             L L G+ NVY+L+GG+  W    LP V   
Sbjct: 79  AALKLAGFTNVYNLDGGIDAWKGAGLPLVRGY 110

Length = 110

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 38/126 (30%)

Query: 29  RLQKENNFVILDVRPEAEFKE-AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT 87
            LQ +   V++DVR EAE+K     P A++V          AW +           +   
Sbjct: 9   LLQADPQAVLVDVRTEAEWKFVGGVPDAVHV----------AWQV-----------YPDM 47

Query: 88  EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNV 147
           E NP FL   +E ++ KD  +++ C +G               RS+ AA      G+ NV
Sbjct: 48  EINPNFLAE-LEEKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNV 92

Query: 148 YH-LEG 152
           Y+ LEG
Sbjct: 93  YNVLEG 98

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 35/147 (23%), Positives = 50/147 (34%), Gaps = 47/147 (31%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
            +R +   EA         V++DVR   E       GA+               I R   
Sbjct: 1   SIREISPAEARARAA-QGAVLIDVREAHERASGQAEGALR--------------IPR--- 42

Query: 78  FAFFGIFSGTEENPEFLQTGVESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                          FL+  +E+ L D+D +I++ CA+G              +RS  AA
Sbjct: 43  --------------GFLELRIETHLPDRDREIVLICASG--------------TRSAHAA 74

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKEELP 163
             L   GY  V  + GG   W    LP
Sbjct: 75  ATLRELGYTRVASVAGGFSAWKDAGLP 101

Length = 376

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 47.6 bits (114), Expect = 6e-08
 Identities = 34/126 (26%), Positives = 48/126 (38%), Gaps = 47/126 (37%)

Query: 28  LRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT 87
           L   + +   ++DVR   EF++ H  GAIN+ +  L           R            
Sbjct: 6   LDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLDEL-----------RDRLN-------- 46

Query: 88  EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNV 147
                        +L KD +IIV CA G               R  IAA +L  NG+K V
Sbjct: 47  -------------ELPKDKEIIVYCAVG--------------LRGYIAARILTQNGFK-V 78

Query: 148 YHLEGG 153
            +L+GG
Sbjct: 79  KNLDGG 84

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|238721 cd01444, GlpE_ST, GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 30/135 (22%), Positives = 41/135 (30%), Gaps = 49/135 (36%)

Query: 26  EALRL-QKENNFVILDVRPEAEF--KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
           E   L       V+LDVR  A +     H PGAI++            D      +    
Sbjct: 6   ELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHL------------DEDSLDDWLG-- 51

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
                              LD+D  ++V C  G +   S  L          A  L    
Sbjct: 52  ------------------DLDRDRPVVVYCYHGNS---SAQL----------AQALRE-A 79

Query: 143 GYKNVYHLEGGLYKW 157
           G+ +V  L GG   W
Sbjct: 80  GFTDVRSLAGGFEAW 94

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine. Length = 96

>gnl|CDD|223982 COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]

 Score = 48.4 bits (116), Expect = 3e-07
 Identities = 33/139 (23%), Positives = 53/139 (38%), Gaps = 40/139 (28%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
           +  K+   L  + + V++D R + E    H  GA+   I    +E+ AW           
Sbjct: 115 LSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDI-ETFREFPAWVEENLDLL--- 170

Query: 82  GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141
                                 KD K+++ C TGG              R   A+  +  
Sbjct: 171 ----------------------KDKKVVMYC-TGGI-------------RCEKASAWMKE 194

Query: 142 NGYKNVYHLEGGLYKWFKE 160
           NG+K VYHLEGG+ K+ ++
Sbjct: 195 NGFKEVYHLEGGILKYLED 213

Length = 308

>gnl|CDD|238724 cd01447, Polysulfide_ST, Polysulfide-sulfurtransferase - Rhodanese Homology Domain

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 30/138 (21%), Positives = 45/138 (32%), Gaps = 41/138 (29%)

Query: 22  VEAKEALRLQKENNFVILDVR--PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 79
           +  ++A  L      +++DVR   E E +    PGA +                 R    
Sbjct: 1   LSPEDARALLGSPGVLLVDVRDPRELE-RTGMIPGAFHAP---------------RGMLE 44

Query: 80  FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 139
           F+         P F          +D   +  CA+G               RS +A   L
Sbjct: 45  FWADPDSPYHKPAF---------AEDKPFVFYCASGW--------------RSALAGKTL 81

Query: 140 VLNGYKNVYHLEGGLYKW 157
              G K VY++EGG   W
Sbjct: 82  QDMGLKPVYNIEGGFKDW 99

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins. Length = 103

>gnl|CDD|238723 cd01446, DSP_MapKP, N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

 Score = 45.7 bits (109), Expect = 7e-07
 Identities = 31/143 (21%), Positives = 53/143 (37%), Gaps = 19/143 (13%)

Query: 25  KEALR--LQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
              L   L++     ++LD RP  E+  +H  GA+NV    +++        RR      
Sbjct: 4   CAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILR--------RR---LQG 52

Query: 82  GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141
           G                  +L +   + V      +    + L E   + S++   L  L
Sbjct: 53  GKIL---LQQLLSCPEDRDRLRRGESLAVVVYDESSSDRER-LREDSTAESVLGKLLRKL 108

Query: 142 NGYKNVYHLEGGLYKWFKEELPE 164
               +VY L+GG ++ F  E PE
Sbjct: 109 QEGCSVYLLKGG-FEQFSSEFPE 130

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain. Length = 132

>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain superfamily

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 36/140 (25%), Positives = 55/140 (39%), Gaps = 44/140 (31%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
           +   E   L ++   V+LDVR + E+   H  GA+N  +          D  R       
Sbjct: 4   LSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDV----------DTFR------- 46

Query: 82  GIFSGTEENPEFLQTGVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 139
                     EF    ++  LD  K  K+++ C TGG              R   A+  L
Sbjct: 47  ----------EFPF-WLDENLDLLKGKKVLMYC-TGGI-------------RCEKASAYL 81

Query: 140 VLNGYKNVYHLEGGLYKWFK 159
              G+KNVY L+GG+ K+ +
Sbjct: 82  KERGFKNVYQLKGGILKYLE 101

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins. Length = 101

>gnl|CDD|234663 PRK00142, PRK00142, putative rhodanese-related sulfurtransferase; Provisional

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 35/143 (24%), Positives = 55/143 (38%), Gaps = 48/143 (33%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQI--YRLIKEWTAWDIARRAAFA 79
           ++ KE   L  + + V +D+R + E++  H   AI   I  +R                 
Sbjct: 114 LKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFR----------------- 156

Query: 80  FFGIFSGTEENPEFLQTGVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                       EF    VE  LD  KD K+++ C TGG              R   A+ 
Sbjct: 157 ------------EFPPW-VEENLDPLKDKKVVMYC-TGGI-------------RCEKASA 189

Query: 138 LLVLNGYKNVYHLEGGLYKWFKE 160
            +   G+K VY LEGG+  + ++
Sbjct: 190 WMKHEGFKEVYQLEGGIITYGED 212

Length = 314

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 33/123 (26%)

Query: 35  NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL 94
           N V++DVR   E K    PGAIN+ +  L                     + +EE  EF 
Sbjct: 15  NKVLIDVREPEELKTGKIPGAINIPLSSLPDA-----------------LALSEE--EFE 55

Query: 95  QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL 154
           +     +  KD ++I  C  G               RS  AA L    GY+NV +  G  
Sbjct: 56  KKYGFPKPSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSW 101

Query: 155 YKW 157
             W
Sbjct: 102 LDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 33/148 (22%), Positives = 52/148 (35%), Gaps = 44/148 (29%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAW 70
           V A+E L      +  ++D R    F           +  H PGA+N+    L+ E    
Sbjct: 1   VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDE---- 56

Query: 71  DIARRAAFAFFGIFSGTEENPEFLQTGVESQ-LDKDAKIIVACATGGTMKPSQNLPEGQQ 129
                          GT ++PE L+    +  +  D  +IV C +G              
Sbjct: 57  --------------DGTFKSPEELRALFAALGITPDKPVIVYCGSG-------------- 88

Query: 130 SRSLIAAYLLVLNGYKNVYHLEGGLYKW 157
             + +    L L GYKNV   +G   +W
Sbjct: 89  VTACVLLLALELLGYKNVRLYDGSWSEW 116

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 40.0 bits (94), Expect = 7e-05
 Identities = 34/130 (26%), Positives = 44/130 (33%), Gaps = 37/130 (28%)

Query: 29  RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE 88
            LQ     V+LDVRP+  F+    P AIN+ +  L+          +AA          E
Sbjct: 18  ILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELL---------SKAA----------E 58

Query: 89  ENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV-LNGYKNV 147
                         DKD+ I V C  G     SQ            A   L  L   + V
Sbjct: 59  LKSLQEL---PLDNDKDSPIYVVCRRGND---SQ-----------TAVRKLKELGLERFV 101

Query: 148 YHLEGGLYKW 157
             + GGL  W
Sbjct: 102 RDIIGGLKAW 111

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|238786 cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 34/140 (24%), Positives = 55/140 (39%), Gaps = 44/140 (31%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           Q+   E  E L  ++E   V++DVR   E + A  PG +++ +   I E           
Sbjct: 1   QISVAELAEWLADEREE-PVLIDVREPEELEIAFLPGFLHLPM-SEIPER---------- 48

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                    ++E             + D  I+V C  GG              RS+  A 
Sbjct: 49  ---------SKELDS---------DNPDKDIVVLCHHGG--------------RSMQVAQ 76

Query: 138 LLVLNGYKNVYHLEGGLYKW 157
            L+  G++NVY+L+GG+  W
Sbjct: 77  WLLRQGFENVYNLQGGIDAW 96

Subgroup 2 includes uncharacterized putative rhodanese-related domains. Length = 101

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 31/149 (20%), Positives = 52/149 (34%), Gaps = 46/149 (30%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           Q   +  ++A +  +E   V++D+R    F   H PGA ++    L              
Sbjct: 3   QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSL-------------- 48

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                          F++     Q D D  ++V C              G  S+   AA 
Sbjct: 49  -------------GAFMR-----QADFDTPVMVMCY------------HGNSSQG--AAQ 76

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELPEVS 166
            L+  G+  VY ++GG   W +    EV+
Sbjct: 77  YLLQQGFDVVYSIDGGFEAWRRTFPAEVA 105

Length = 108

>gnl|CDD|238781 cd01523, RHOD_Lact_B, Member of the Rhodanese Homology Domain superfamily

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 28/120 (23%), Positives = 40/120 (33%), Gaps = 39/120 (32%)

Query: 38  ILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG 97
           ILDVR E++++     G  N   +                   F      E+        
Sbjct: 18  ILDVRNESDYERWKIDGENNTPYFDPY----------------FDFLEIEED-------- 53

Query: 98  VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW 157
           +  QL  D ++ V CA  G+              S   A LL   GY  V +L GG+  W
Sbjct: 54  ILDQLPDDQEVTVICAKEGS--------------SQFVAELLAERGYD-VDYLAGGMKAW 98

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. Length = 100

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 40/148 (27%), Positives = 61/148 (41%), Gaps = 36/148 (24%)

Query: 24  AKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA----FA 79
             E L   ++ +  ++DVR   EF E H PGAIN+ +          D   RA     + 
Sbjct: 2   TAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLL---------DDEERALVGTLYK 52

Query: 80  FFGIFSGTEENPEFLQTGVESQLDK--------DAKIIVACATGGTMKPSQNLPEGQQSR 131
             G  +  E   E +   ++  L++        D K+++ CA GG              R
Sbjct: 53  QQGREAAIELGLELVSGKLKRILNEAWEARLERDPKLLIYCARGGM-------------R 99

Query: 132 SLIAAYLLVLNGYKNVYHLEGGLYKWFK 159
           S   A+LL   G  +V  LEGG YK ++
Sbjct: 100 SQSLAWLLESLGI-DVPLLEGG-YKAYR 125

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 31/144 (21%)

Query: 34  NNFVILDVRPEAEFKEAHPPGAIN---------VQIYRLIKEWTAWDIARRAAFAFFGIF 84
               ++DVR  AEF E H PGAIN          ++  L K+      A +   A     
Sbjct: 1   AFDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGP-FAAIKLGLALVS-- 57

Query: 85  SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY 144
                    ++    +  D   + ++ C  GG              RS   A+LL   G+
Sbjct: 58  ---PNLAAHVEQ-WRAFADGPPQPLLYCWRGG-------------MRSGSLAWLLAQIGF 100

Query: 145 KNVYHLEGGLYKWFKEELPEVSEE 168
             V  LEGG YK ++  + +  EE
Sbjct: 101 -RVPRLEGG-YKAYRRFVIDQLEE 122

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|238725 cd01448, TST_Repeat_1, Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 35/147 (23%)

Query: 22  VEAKEALRLQKENNFVILDVR-------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIAR 74
           V          + +  ILD R          E+ E H PGA+              D+  
Sbjct: 2   VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFF--------DLDEDLDD 53

Query: 75  RAAFAFFGIFSGTEENPEFLQTGVESQ-LDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 133
           ++             +PE     + S  +  D  ++V    GG             +R  
Sbjct: 54  KSPGPHMLP------SPEEFAELLGSLGISNDDTVVVYDDGGG----------FFAAR-- 95

Query: 134 IAAYLLVLNGYKNVYHLEGGLYKWFKE 160
            A + L   G++NV  L+GGL  W  E
Sbjct: 96  -AWWTLRYFGHENVRVLDGGLQAWKAE 121

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction. Length = 122

>gnl|CDD|238779 cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 35 NFVILDVRPEAEFKEAHPPGAIN 57
          +FV++DVR    +   H PGAIN
Sbjct: 25 DFVLVDVRSAEAYARGHVPGAIN 47

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins. Length = 110

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 36.7 bits (86), Expect = 0.003
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 26 EALRLQKENNFVILDVRPEAEFKEAHPPGAINV 58
          +  R    N+  ++DVR   EF E H PGAIN+
Sbjct: 6  QDFRALFLNDTPLIDVRSPIEFAEGHIPGAINL 38

Length = 345

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 43/151 (28%), Positives = 59/151 (39%), Gaps = 33/151 (21%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           +V SV+  +A  L +  +   LDVR + EF+  H   A  V I  ++             
Sbjct: 13  EVVSVDVSQAKTLLQSGH-QYLDVRTQDEFRRGHCEAAKIVNIPYMLN------------ 59

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                   G  +N EFL+  V S L+    I+V C +G              +RSL A  
Sbjct: 60  -----TPQGRVKNQEFLEQ-VSSLLNPADDILVGCQSG--------------ARSLKATT 99

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
            LV  GYK V +  GG   W     P   EE
Sbjct: 100 ELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130

Length = 136

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.91
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.91
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.91
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.91
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.9
PLN02160	136	thiosulfate sulfurtransferase	99.9
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.88
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.88
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.88
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.88
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.88
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.88
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.88
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.87
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.87
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.87
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.87
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.87
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.87
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.86
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.86
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.86
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.86
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.85
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.85
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.85
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.85
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.84
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.84
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.83
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.83
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.83
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.83
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.83
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.83
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.81
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.8
PRK01415	247	hypothetical protein; Validated	99.8
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.8
PRK05320	257	rhodanese superfamily protein; Provisional	99.8
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.79
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.79
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.79
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.78
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.78
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.77
PRK07411	390	hypothetical protein; Validated	99.74
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.73
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.72
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.71
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.71
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.64
COG1054	308	Predicted sulfurtransferase [General function pred	99.54
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.52
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.41
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.4
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.22
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.11
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.65
KOG1717	343	consensus Dual specificity phosphatase [Defense me	97.67
COG2603	334	Predicted ATPase [General function prediction only	97.66
KOG1093	725	consensus Predicted protein kinase (contains TBC a	96.84
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	96.32
KOG3636	669	consensus Uncharacterized conserved protein, conta	95.58
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	95.48
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	95.12
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	94.98
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	90.5
PF01451	138	LMWPc: Low molecular weight phosphotyrosine protei	83.87
COG0062	203	Uncharacterized conserved protein [Function unknow	82.46
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	81.86
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	81.74

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.91  E-value=4.9e-24  Score=150.89  Aligned_cols=117  Identities=36%  Similarity=0.541  Sum_probs=103.8

Q ss_pred             hcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           16 LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      ...+.+++.++++++++.++.++||||.++||.+||+|.+||||+.....                   .++...++|++
T Consensus        19 ~~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~-------------------~~~l~~~eF~k   79 (136)
T KOG1530|consen   19 ASNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPG-------------------AGALKNPEFLK   79 (136)
T ss_pred             cCCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEecccccccc-------------------ccccCCHHHHH
Confidence            46678999999999999988999999999999999999999999965432                   23456789999


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~  165 (168)
                      ++....-+.++.|||+|.+|.              |+..|...|..+||+||.++.|||.+|.+.++|..
T Consensus        80 qvg~~kp~~d~eiIf~C~SG~--------------Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen   80 QVGSSKPPHDKEIIFGCASGV--------------RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             HhcccCCCCCCcEEEEeccCc--------------chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            976676677889999999998              99999999999999999999999999999988764

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.91  E-value=6e-24  Score=148.64  Aligned_cols=101  Identities=31%  Similarity=0.389  Sum_probs=85.6

Q ss_pred             cccceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           17 LQVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      ..+..|+++++.++++++ +.+|||||++.||..||||||+|+|+..+....                           .
T Consensus         7 ~~~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~~l~~~~---------------------------~   59 (109)
T cd01533           7 RHTPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRV---------------------------G   59 (109)
T ss_pred             ccCCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHH---------------------------H
Confidence            446789999999999765 578999999999999999999999997653311                           1


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc-eeEccccHHHHHhcC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEE  161 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~-v~~l~GG~~~w~~~g  161 (168)
                         ....+++++||+||.+|.              ||..+++.|+..||+| |+.|.||+.+|..+|
T Consensus        60 ---~l~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          60 ---ELAPDPRTPIVVNCAGRT--------------RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             ---hcCCCCCCeEEEECCCCc--------------hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence               122356789999999998              9999999999999988 999999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.91  E-value=9.9e-24  Score=147.32  Aligned_cols=103  Identities=30%  Similarity=0.492  Sum_probs=90.9

Q ss_pred             ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      .+..++++++.++++.++.++||+|++.||..||||||+|+|+..+..                           +    
T Consensus         3 ~~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~~---------------------------~----   51 (108)
T PRK00162          3 QFECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLGA---------------------------F----   51 (108)
T ss_pred             CccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHHH---------------------------H----
Confidence            577899999999997767899999999999999999999999865432                           1    


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                       ...++++++||+||.+|.              ++..++..|+..||+||++|.||+.+|...++|++.
T Consensus        52 -~~~~~~~~~ivv~c~~g~--------------~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~  105 (108)
T PRK00162         52 -MRQADFDTPVMVMCYHGN--------------SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVA  105 (108)
T ss_pred             -HHhcCCCCCEEEEeCCCC--------------CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccC
Confidence             123578899999999997              899999999999999999999999999999999875

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.91  E-value=1.3e-23  Score=144.34  Aligned_cols=98  Identities=30%  Similarity=0.413  Sum_probs=86.5

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      ..|+++++.++++.+ .+|||+|++.+|..+|||||+|+|+..+...                                .
T Consensus         2 ~~i~~~el~~~~~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~--------------------------------~   48 (99)
T cd01527           2 TTISPNDACELLAQG-AVLVDIREPDEYLRERIPGARLVPLSQLESE--------------------------------G   48 (99)
T ss_pred             CccCHHHHHHHHHCC-CEEEECCCHHHHHhCcCCCCEECChhHhccc--------------------------------c
Confidence            568999999999875 8999999999999999999999998765321                                1


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  164 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~  164 (168)
                      ..++++++||+||++|.              ++..++..|.+.||.++++|.||+.+|..+|+|+
T Consensus        49 ~~~~~~~~iv~~c~~g~--------------~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          49 LPLVGANAIIFHCRSGM--------------RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             cCCCCCCcEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            23578899999999997              9999999999999999999999999999999875

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=5.4e-24  Score=146.87  Aligned_cols=99  Identities=30%  Similarity=0.454  Sum_probs=82.3

Q ss_pred             eecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946           21 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  100 (168)
Q Consensus        21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (168)
                      .|+++++.++++.++.+|||||++.||..||||||+|+|+..+....                        ..+..  ..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~~~------------------------~~~~~--~~   56 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFREFP------------------------FWLDE--NL   56 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhHhH------------------------HHHHh--hh
Confidence            58899999999877899999999999999999999999997653210                        00110  11


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      ..+++++||+||.+|.              ||..++..|...||++|++|.||+.+|.+
T Consensus        57 ~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          57 DLLKGKKVLMYCTGGI--------------RCEKASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             hhcCCCEEEEECCCch--------------hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence            2478899999999997              99999999999999999999999999974

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>PLN02160 thiosulfate sulfurtransferase

Probab=99.90  E-value=1.8e-23  Score=152.18  Aligned_cols=117  Identities=36%  Similarity=0.549  Sum_probs=92.9

Q ss_pred             cccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCc--EEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      ..+..++++++.++++. +.+|||||++.||..||||||  +|+|+..+...                   +....+++.
T Consensus        12 ~~~~~i~~~e~~~~~~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~-------------------~~l~~~~~~   71 (136)
T PLN02160         12 EEVVSVDVSQAKTLLQS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ-------------------GRVKNQEFL   71 (136)
T ss_pred             eeeeEeCHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCcceecccchhcCcc-------------------cccCCHHHH
Confidence            35789999999999976 468999999999999999999  88887432100                   000112332


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCCC
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  168 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~~  168 (168)
                      .. ....++++++||+||.+|.              ||..++..|.+.||++|+.|.||+.+|.++|+|+.+++
T Consensus        72 ~~-~~~~~~~~~~IivyC~sG~--------------RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  130 (136)
T PLN02160         72 EQ-VSSLLNPADDILVGCQSGA--------------RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE  130 (136)
T ss_pred             HH-HHhccCCCCcEEEECCCcH--------------HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence            22 1123578899999999998              99999999999999999999999999999999998764

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.8e-22  Score=139.92  Aligned_cols=103  Identities=32%  Similarity=0.415  Sum_probs=82.2

Q ss_pred             cHHHHHHHhh-cCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhcc
Q 030946           23 EAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ  101 (168)
Q Consensus        23 ~~~~l~~~l~-~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (168)
                      +++++.++++ .++.+|||+|++.+|..||||||+|+|+..+....                   .....+|.+......
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~-------------------~~~~~~~~~~~~~~~   62 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDAL-------------------ALSEEEFEKKYGFPK   62 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhh-------------------CCCHHHHHHHhcccC
Confidence            6788999887 66799999999999999999999999998753210                   001112222212245


Q ss_pred             CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946          102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus       102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~  158 (168)
                      ++++++||+||.+|.              +|..+++.|...||+||++|+||+.+|.
T Consensus        63 ~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          63 PSKDKELIFYCKAGV--------------RSKAAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             CCCCCeEEEECCCcH--------------HHHHHHHHHHHcCCccceecCCcHHHHc
Confidence            677899999999987              9999999999999999999999999996

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.88  E-value=1.4e-22  Score=144.13  Aligned_cols=114  Identities=26%  Similarity=0.312  Sum_probs=90.3

Q ss_pred             ecHHHHHHHhhcCCeEEEecCCh-------hhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           22 VEAKEALRLQKENNFVILDVRPE-------AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~-------~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      |+++++.+++++++.+|||+|++       .+|..||||||+|+|+..+.....          ...+.+...+++.+++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~   71 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKS----------PGPHMLPSPEEFAELL   71 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCC----------CCCCCCCCHHHHHHHH
Confidence            78999999998777899999999       999999999999999987653210          0122233333444444


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      ..   .+++++++||+||++|+             .++..+++.|+..||++|++|+||+.+|..+|
T Consensus        72 ~~---~~~~~~~~vv~~c~~g~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          72 GS---LGISNDDTVVVYDDGGG-------------FFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             HH---cCCCCCCEEEEECCCCC-------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            33   56889999999999953             28999999999999999999999999998875

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=4.5e-22  Score=139.48  Aligned_cols=103  Identities=27%  Similarity=0.442  Sum_probs=86.8

Q ss_pred             ccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           18 QVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      .-..++++++.++++.+  +.+|||+|++.+|..||||||+|+|...+...                             
T Consensus         6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~-----------------------------   56 (110)
T cd01521           6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHREICEN-----------------------------   56 (110)
T ss_pred             eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhhhH-----------------------------
Confidence            34578999999999763  58999999999999999999999998764311                             


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  164 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~  164 (168)
                        ....++++++||+||++|.+            .++..+++.|+..||+ +++|+||+.+|..+|+|+
T Consensus        57 --~~~~i~~~~~vvvyc~~g~~------------~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          57 --ATAKLDKEKLFVVYCDGPGC------------NGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             --hhhcCCCCCeEEEEECCCCC------------chHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence              12356889999999998742            2789999999999995 999999999999999885

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=1.6e-22  Score=139.23  Aligned_cols=98  Identities=27%  Similarity=0.439  Sum_probs=80.8

Q ss_pred             ecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946           22 VEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  100 (168)
Q Consensus        22 i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (168)
                      |+++++.++++++ +.+|||||++.||..||||||+|+|+..+...+...                   ..+     ...
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~-------------------~~~-----~~~   56 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFDFLEI-------------------EED-----ILD   56 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHHHHHh-------------------hHH-----HHh
Confidence            5789999999764 689999999999999999999999998764432000                   000     123


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~  158 (168)
                      .++++++||+||.+|.              ||..++..|...||+ ++.|.||+.+|.
T Consensus        57 ~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          57 QLPDDQEVTVICAKEG--------------SSQFVAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             hCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence            4678899999999998              999999999999998 999999999996

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.88  E-value=2.9e-22  Score=136.83  Aligned_cols=93  Identities=30%  Similarity=0.389  Sum_probs=77.2

Q ss_pred             ecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           22 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        22 i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      |+++++.++++++  +.++||||++.||..||||||+|+|+..+.....                       .       
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~~~~~-----------------------~-------   50 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLVQETD-----------------------H-------   50 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHHHHHH-----------------------H-------
Confidence            6889999999764  5789999999999999999999999876543110                       0       


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      ....++++||+||.+|.              |+..++..|...||+ |++|+||+.+|..
T Consensus        51 ~~~~~~~~iv~~c~~G~--------------rs~~aa~~L~~~G~~-v~~l~GG~~~W~~   95 (95)
T cd01534          51 FAPVRGARIVLADDDGV--------------RADMTASWLAQMGWE-VYVLEGGLAAALA   95 (95)
T ss_pred             hcccCCCeEEEECCCCC--------------hHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence            01124688999999998              999999999999998 9999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=6.5e-22  Score=142.35  Aligned_cols=121  Identities=31%  Similarity=0.395  Sum_probs=83.3

Q ss_pred             ecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHh----hhhhccccCCCCCchHHHHhh
Q 030946           22 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA----AFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      |+++++.++++ ++.+|||||++.||..||||||+|+|+..+..+..........    ....... ....++++++...
T Consensus         1 ~s~~el~~~l~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~   78 (128)
T cd01520           1 ITAEDLLALRK-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLE-LVSGKLKRILNEA   78 (128)
T ss_pred             CCHHHHHHHHh-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHH-HHhhhHHHHHHHH
Confidence            68999999998 4789999999999999999999999996543221000000000    0000000 0001233444331


Q ss_pred             hhccCCCCCeEEEEeCC-CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946           98 VESQLDKDAKIIVACAT-GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~-g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      ...+++++++||+||+. |.              ||.++++.|+.+|| +|++|+||+.+|++
T Consensus        79 ~~~~i~~~~~vvvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~L~GG~~aw~~  126 (128)
T cd01520          79 WEARLERDPKLLIYCARGGM--------------RSQSLAWLLESLGI-DVPLLEGGYKAYRK  126 (128)
T ss_pred             HHhccCCCCeEEEEeCCCCc--------------cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence            22478899999999974 55              99999999999999 59999999999974

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=5.2e-22  Score=141.64  Aligned_cols=114  Identities=27%  Similarity=0.395  Sum_probs=90.9

Q ss_pred             cccceecHHHHHHHhhc-CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           17 LQVRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~-~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      .....|+++++.+++++ .+.+|||+|++.||..+|||||+|+|+..+......                    ++..  
T Consensus         5 ~~~~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~~~~--------------------~~~~--   62 (122)
T cd01526           5 SPEERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSKAAE--------------------LKSL--   62 (122)
T ss_pred             CcccccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhhhhh--------------------hhhh--
Confidence            34668999999999976 478999999999999999999999999876432110                    0000  


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCc-cceeEccccHHHHHhcCCCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGY-KNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~-~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      ......++++++||+||++|.              ||..++..|+..|| ++|+.|+||+.+|..+..+.-+
T Consensus        63 ~~~~~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~~~~  120 (122)
T cd01526          63 QELPLDNDKDSPIYVVCRRGN--------------DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDPTFP  120 (122)
T ss_pred             hhcccccCCCCcEEEECCCCC--------------cHHHHHHHHHHcCCccceeeecchHHHHHHHhCccCC
Confidence            001234578899999999997              99999999999999 7999999999999988766543

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.87  E-value=5.5e-22  Score=148.35  Aligned_cols=117  Identities=23%  Similarity=0.277  Sum_probs=87.1

Q ss_pred             hcccceecHHHHHHHhhcCCeEEEecCChh----hhhhc---------CCCCcEEechhhHHhhhhHHHHHHHhhhhhcc
Q 030946           16 LLQVRSVEAKEALRLQKENNFVILDVRPEA----EFKEA---------HPPGAINVQIYRLIKEWTAWDIARRAAFAFFG   82 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~----e~~~g---------hIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~   82 (168)
                      ......|+++++.+++++++.+|||||+..    +|..|         |||||+|+|+..... .               
T Consensus        32 ~~~~~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~-l---------------   95 (162)
T TIGR03865        32 LKGARVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN-L---------------   95 (162)
T ss_pred             cCCccccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC-C---------------
Confidence            455678999999999988789999999865    45444         999999999632110 0               


Q ss_pred             ccCCCCCchHHHHhhhhc-cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           83 IFSGTEENPEFLQTGVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~-~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                        .. ...+.+.+..... ...++++||+||.+|.             .+|..+++.|+.+||+||++|+||+.+|+++|
T Consensus        96 --~~-~~~~~~~~~l~~~~~~~~d~~IVvYC~~G~-------------~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG  159 (162)
T TIGR03865        96 --AP-AWQAYFRRGLERATGGDKDRPLVFYCLADC-------------WMSWNAAKRALAYGYSNVYWYPDGTDGWQAAG  159 (162)
T ss_pred             --CC-chhHHHHHHHHHhcCCCCCCEEEEEECCCC-------------HHHHHHHHHHHhcCCcceEEecCCHHHHHHcC
Confidence              00 0001122211112 2368999999999875             38999999999999999999999999999999


Q ss_pred             CCC
Q 030946          162 LPE  164 (168)
Q Consensus       162 ~p~  164 (168)
                      +|+
T Consensus       160 ~Pv  162 (162)
T TIGR03865       160 LPL  162 (162)
T ss_pred             CCC
Confidence            986

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.87  E-value=5.1e-22  Score=136.73  Aligned_cols=102  Identities=26%  Similarity=0.450  Sum_probs=81.4

Q ss_pred             ecHHHHHHHhhcCCeEEEecCChhhh-hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946           22 VEAKEALRLQKENNFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  100 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~~e~-~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (168)
                      |+++++.+++++++.+|||+|++.+| ..||||||+|+|+..+.. +...                   ...+    ...
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~-~~~~-------------------~~~~----~~~   56 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF-WADP-------------------DSPY----HKP   56 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh-hcCc-------------------cccc----ccc
Confidence            57899999988768999999999998 579999999999865421 1000                   0000    112


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      .++++++||+||++|.              ++..+++.|...||++|++|+||+.+|..+|
T Consensus        57 ~~~~~~~ivv~c~~g~--------------~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          57 AFAEDKPFVFYCASGW--------------RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             CCCCCCeEEEEcCCCC--------------cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            4678899999999987              8999999999999999999999999998765

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=6.8e-22  Score=134.56  Aligned_cols=92  Identities=32%  Similarity=0.467  Sum_probs=80.4

Q ss_pred             eecHHHHHHHhhc-CCeEEEecCChhhhhh--cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           21 SVEAKEALRLQKE-NNFVILDVRPEAEFKE--AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        21 ~i~~~~l~~~l~~-~~~~liDvR~~~e~~~--ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      .|+++++.++++. .+.+|||+|++.+|..  ||||||+|+|+..+..                                
T Consensus         1 ~i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~~--------------------------------   48 (96)
T cd01444           1 RISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLDD--------------------------------   48 (96)
T ss_pred             CcCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHHH--------------------------------
Confidence            3788999998876 4689999999999999  9999999999976532                                


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~  158 (168)
                      ....++++++||+||.+|.              +|..+++.|+..||++|++|.||+.+|.
T Consensus        49 ~~~~~~~~~~ivv~c~~g~--------------~s~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          49 WLGDLDRDRPVVVYCYHGN--------------SSAQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHhhcCCCCCEEEEeCCCC--------------hHHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            1123678899999999887              9999999999999999999999999996

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=9.4e-22  Score=133.01  Aligned_cols=89  Identities=37%  Similarity=0.576  Sum_probs=77.1

Q ss_pred             ecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhcc
Q 030946           22 VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQ  101 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (168)
                      ++++++.++++ ++.++||+|++.+|..||||||+|+|+..+...                                ...
T Consensus         1 ~~~~e~~~~~~-~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~~~--------------------------------~~~   47 (90)
T cd01524           1 VQWHELDNYRA-DGVTLIDVRTPQEFEKGHIKGAINIPLDELRDR--------------------------------LNE   47 (90)
T ss_pred             CCHHHHHHHhc-CCCEEEECCCHHHHhcCCCCCCEeCCHHHHHHH--------------------------------HHh
Confidence            57899999984 478999999999999999999999998765321                                123


Q ss_pred             CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946          102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus       102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~  158 (168)
                      ++++++||+||++|.              ++..++..|+..|| ++++|+||+.+|+
T Consensus        48 ~~~~~~vvl~c~~g~--------------~a~~~a~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          48 LPKDKEIIVYCAVGL--------------RGYIAARILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             cCCCCcEEEEcCCCh--------------hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence            577889999999987              89999999999999 8999999999996

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.87  E-value=1.2e-21  Score=135.19  Aligned_cols=96  Identities=29%  Similarity=0.532  Sum_probs=80.4

Q ss_pred             ecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           22 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        22 i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      |+++++.++++.+  +.++||+|++.||..+|||||+|+|+..+...                           ++.  .
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~~~---------------------------~~~--~   52 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMSEIPER---------------------------SKE--L   52 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHHHHHHH---------------------------HHH--h
Confidence            7899999999864  58999999999999999999999998765321                           111  0


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                      ...+++++||+||++|.              ||..++..|.+.||++|++|+||+.+|...
T Consensus        53 ~~~~~~~~vv~~c~~g~--------------rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          53 DSDNPDKDIVVLCHHGG--------------RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             cccCCCCeEEEEeCCCc--------------hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            11256889999999987              999999999999999999999999999753

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=1.1e-21  Score=135.92  Aligned_cols=102  Identities=20%  Similarity=0.307  Sum_probs=78.7

Q ss_pred             ecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           22 VEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        22 i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      |+++++.++++++  +.+|||||++.||..||||||+|+|+..++......              ..... ...+.    
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~--------------~~~~~-~~~~~----   61 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGEL--------------EQLPT-VPRLE----   61 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhccccccc--------------ccccc-hHHHH----
Confidence            6899999999763  689999999999999999999999997654210000              00000 01111    


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~  158 (168)
                        ..++++||+||.+|.              +|..+++.|+..||++|++|.||+.+|+
T Consensus        62 --~~~~~~vv~~c~~g~--------------~s~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          62 --NYKGKIIVIVSHSHK--------------HAALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             --hhcCCeEEEEeCCCc--------------cHHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence              124789999999997              8999999999999999999999999996

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=5.6e-22  Score=140.01  Aligned_cols=107  Identities=30%  Similarity=0.487  Sum_probs=83.4

Q ss_pred             ecHHHHHHHhhcCCeEEEecCChhhhhh-----------cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           22 VEAKEALRLQKENNFVILDVRPEAEFKE-----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~~e~~~-----------ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ++++++.+++++++.+|||+|++.||..           ||||||+|+|+..+....              +.+...+++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~--------------~~~~~~~~~   66 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED--------------GTFKSPEEL   66 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC--------------CCcCCHHHH
Confidence            5789999998766799999999999987           999999999997654311              111111111


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946           91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      .+++   ...+++++++||+||++|.              +|.++++.|+.+||+++++|+||+.+|..
T Consensus        67 ~~~~---~~~~~~~~~~iv~yc~~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~~  118 (118)
T cd01449          67 RALF---AALGITPDKPVIVYCGSGV--------------TACVLLLALELLGYKNVRLYDGSWSEWGS  118 (118)
T ss_pred             HHHH---HHcCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence            2222   2245778999999999986              99999999999999999999999999963

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.86  E-value=1.4e-21  Score=135.81  Aligned_cols=108  Identities=32%  Similarity=0.559  Sum_probs=80.1

Q ss_pred             cHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccC
Q 030946           23 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL  102 (168)
Q Consensus        23 ~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (168)
                      ||+|+.++++.++.+|||+|++.+|..||||||+|+|+..+........               ...+.+.+.. ....+
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~---------------~~~~~~~~~~-~~~~~   64 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLS---------------EDKLDEFLKE-LGKKI   64 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCH---------------HHHHHHHHHH-HTHGS
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCcccccccccccccccc---------------cccccccccc-ccccc
Confidence            6899999996669999999999999999999999999966410000000               0001122222 33456


Q ss_pred             CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH-----HHHcCccceeEccccHHHHHhc
Q 030946          103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL-----LVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus       103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~-----L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                      +++++||+||..+.              ++..++..     |..+||++|++|+|||.+|.++
T Consensus        65 ~~~~~iv~yc~~~~--------------~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~  113 (113)
T PF00581_consen   65 DKDKDIVFYCSSGW--------------RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE  113 (113)
T ss_dssp             TTTSEEEEEESSSC--------------HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred             cccccceeeeeccc--------------ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence            88899999998776              77776666     8999999999999999999864

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.86  E-value=4.5e-21  Score=129.75  Aligned_cols=98  Identities=38%  Similarity=0.627  Sum_probs=78.0

Q ss_pred             CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeC
Q 030946           34 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  113 (168)
Q Consensus        34 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~  113 (168)
                      ++.+|||+|++.||..+|||||+|+|+..+.......                  ....+..........++++||+||.
T Consensus         3 ~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~iv~~c~   64 (100)
T smart00450        3 EKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGEL------------------DILEFEELLKRLGLDKDKPVVVYCR   64 (100)
T ss_pred             CCEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCc------------------CHHHHHHHHHHcCCCCCCeEEEEeC
Confidence            4789999999999999999999999998765321110                  0001222223356788999999998


Q ss_pred             CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946          114 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  163 (168)
Q Consensus       114 ~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p  163 (168)
                      +|.              ++..+++.|+..||++|++|.||+.+|.+++.|
T Consensus        65 ~g~--------------~a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       65 SGN--------------RSAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             CCc--------------HHHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence            876              999999999999999999999999999998865

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.86  E-value=2.3e-21  Score=159.23  Aligned_cols=123  Identities=18%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             cceecHHHHHHHhhcCCeEEEecC--------C-hhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           19 VRSVEAKEALRLQKENNFVILDVR--------P-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR--------~-~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ...|++++|.+.+++++.+|||+|        . ..+|..||||||+|+++..+....          ....++++..+.
T Consensus        21 ~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~----------~~~~~~lp~~~~   90 (320)
T PLN02723         21 EPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRT----------TDLPHMLPSEEA   90 (320)
T ss_pred             CceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCC----------CCcCCCCCCHHH
Confidence            457999999999987789999996        3 478999999999999987653311          011223333344


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      +.+++.   ..++.++++||+||..|.             ..+.++++.|+.+||++|++|+||+.+|.++|+|++++
T Consensus        91 ~~~~l~---~~Gi~~~~~VVvY~~~g~-------------~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~  152 (320)
T PLN02723         91 FAAAVS---ALGIENKDGVVVYDGKGI-------------FSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS  152 (320)
T ss_pred             HHHHHH---HcCCCCCCEEEEEcCCCc-------------chHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence            444444   478889999999998886             26778999999999999999999999999999999764

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=3.7e-21  Score=137.32  Aligned_cols=99  Identities=24%  Similarity=0.372  Sum_probs=79.9

Q ss_pred             ceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhh-HHhhhhHHHHHHHhhhhhccccCCCCCchH
Q 030946           20 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEENPE   92 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (168)
                      ..|+++++.+++.++      +.+|||||++.||..||||||+|+|+.. +.....                        
T Consensus         2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~~~~~------------------------   57 (121)
T cd01530           2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELEEFFL------------------------   57 (121)
T ss_pred             CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHHHHHH------------------------
Confidence            468999999999753      6899999999999999999999999863 322110                        


Q ss_pred             HHHhhhhccCCCCCeEEEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHHc------------CccceeEccccHHHHH
Q 030946           93 FLQTGVESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKWF  158 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~iV~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~~------------G~~~v~~l~GG~~~w~  158 (168)
                        +......++++++||+||. +|.              ||..+++.|+..            ||.+|++|.|||.+|.
T Consensus        58 --~~~~~~~~~~~~~vv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          58 --DKPGVASKKKRRVLIFHCEFSSK--------------RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             --HhhcccccCCCCEEEEECCCccc--------------cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence              0001123678999999997 776              999999999985            9999999999999985

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.85  E-value=3.2e-21  Score=136.73  Aligned_cols=103  Identities=31%  Similarity=0.458  Sum_probs=83.0

Q ss_pred             ecHHHHHHHhhc-CCeEEEecCChhhhh-hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           22 VEAKEALRLQKE-NNFVILDVRPEAEFK-EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        22 i~~~~l~~~l~~-~~~~liDvR~~~e~~-~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      |+++++.+++++ ++.++||||++.||. .||||||+|+|+.++....                     ....+... ..
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~---------------------~~~~~~~~-l~   58 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDME---------------------INPNFLAE-LE   58 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhccccc---------------------cCHHHHHH-HH
Confidence            689999999987 479999999999999 9999999999997654210                     01122222 11


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                      ...+++++||+||.+|.              +|..++..|...||+|++.|.||+.+|++.
T Consensus        59 ~~~~~~~~ivv~C~~G~--------------rs~~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          59 EKVGKDRPVLLLCRSGN--------------RSIAAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             hhCCCCCeEEEEcCCCc--------------cHHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence            22368899999999987              999999999999999999999999999764

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.85  E-value=2.8e-21  Score=155.99  Aligned_cols=122  Identities=22%  Similarity=0.250  Sum_probs=94.7

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCC----------hhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           20 RSVEAKEALRLQKENNFVILDVRP----------EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~----------~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ..++++++.+.+++++.+|||+|+          +.+|..||||||+|+|+..+.....          ...+.+...+.
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~----------~~~~~~~~~~~   74 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTS----------PLPHMMPRPET   74 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCC----------CCCCCCCCHHH
Confidence            468999999999888899999996          7889999999999999865432110          00111222223


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      +.+++   ...+++++++||+||.++.             ..+.++++.|...||++|++|+||+.+|.++|+|++.+
T Consensus        75 ~~~~~---~~~Gi~~d~~VVvyc~~~~-------------~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~  136 (281)
T PRK11493         75 FAVAM---RELGVNQDKHLVVYDEGNL-------------FSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG  136 (281)
T ss_pred             HHHHH---HHcCCCCCCEEEEECCCCC-------------chHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence            33343   3478899999999999876             25778899999999999999999999999999998864

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.85  E-value=7.1e-21  Score=139.93  Aligned_cols=95  Identities=26%  Similarity=0.339  Sum_probs=80.2

Q ss_pred             HHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCC
Q 030946           27 ALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKD  105 (168)
Q Consensus        27 l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (168)
                      +.+++.++ +.+|||||++.+|..||||||+|+|...+...                                ...++++
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~~~--------------------------------l~~l~~~   49 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLRAQLAQA--------------------------------LEKLPAA   49 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCHHHHHHH--------------------------------HHhcCCC
Confidence            45556443 58999999999999999999999987665331                                1235677


Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946          106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus       106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ++||+||.++.              +|..+++.|+..|+++|++|.||+.+|+.+|+|++++
T Consensus        50 ~~vVv~c~~g~--------------~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~   97 (145)
T cd01535          50 ERYVLTCGSSL--------------LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESG   97 (145)
T ss_pred             CCEEEEeCCCh--------------HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence            89999999976              8999999999999999999999999999999999864

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.85  E-value=4.7e-21  Score=139.79  Aligned_cols=111  Identities=23%  Similarity=0.347  Sum_probs=84.2

Q ss_pred             ecHHHHHHHhh----cCCeEEEecCCh--------hhhhh------------cCCCCcEEechhhHHhhhhHHHHHHHhh
Q 030946           22 VEAKEALRLQK----ENNFVILDVRPE--------AEFKE------------AHPPGAINVQIYRLIKEWTAWDIARRAA   77 (168)
Q Consensus        22 i~~~~l~~~l~----~~~~~liDvR~~--------~e~~~------------ghIpgAi~ip~~~l~~~~~~~~~~~~~~   77 (168)
                      |+++++.+.++    +++.+|||+|+.        .+|..            ||||||+|+|+..+.....         
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~---------   71 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAG---------   71 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCC---------
Confidence            57899999997    457999999987        88988            9999999999875532110         


Q ss_pred             hhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC--CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946           78 FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  155 (168)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~--g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~  155 (168)
                       ...+.++..+++.+++   ...++.++++||+||++  ++             .++.++++.|+.+|++||++|+||+.
T Consensus        72 -~~~~~~p~~~~~~~~~---~~~GI~~~~~vVvY~~~~~~g-------------~~A~r~~~~l~~~G~~~v~ildGG~~  134 (138)
T cd01445          72 -FEESMEPSEAEFAAMF---EAKGIDLDKHLIATDGDDLGG-------------FTACHIALAARLCGHPDVAILDGGFF  134 (138)
T ss_pred             -CCCCCCCCHHHHHHHH---HHcCCCCCCeEEEECCCCCcc-------------hHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence             0111122222333333   44789999999999986  22             28999999999999999999999999


Q ss_pred             HHH
Q 030946          156 KWF  158 (168)
Q Consensus       156 ~w~  158 (168)
                      +|+
T Consensus       135 ~W~  137 (138)
T cd01445         135 EWF  137 (138)
T ss_pred             Hhh
Confidence            996

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.84  E-value=6.4e-21  Score=167.80  Aligned_cols=122  Identities=20%  Similarity=0.276  Sum_probs=98.7

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      ..|++++|.+++++++.+|||+|++.+|..||||||+|+++.......          ....+++...+++++.+.+   
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~----------~~~~~~lp~~~~l~~~l~~---   75 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGK----------PPAPGLLPDTADLEQLFGE---   75 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccC----------CCCCCCCCCHHHHHHHHHH---
Confidence            469999999999888899999999999999999999999986532210          0112333333444555544   


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      .++.++++||+||+++.             .++.+++|.|+.+|+++|++|+||+.+|..+|+|++++
T Consensus        76 lGI~~d~~VVvYd~~g~-------------~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~  130 (610)
T PRK09629         76 LGHNPDAVYVVYDDEGG-------------GWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTD  130 (610)
T ss_pred             cCCCCCCEEEEECCCCC-------------chHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccC
Confidence            78899999999999875             37889999999999999999999999999999998764

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.84  E-value=5.8e-21  Score=156.85  Aligned_cols=115  Identities=20%  Similarity=0.315  Sum_probs=93.4

Q ss_pred             ecHHHHHHHhhcCCeEEEecCChhhh-----------hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           22 VEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~~e~-----------~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ++.+++.+.+..++.+|||+|++.||           ..||||||+|+|+..+....              +.|.+.+++
T Consensus       192 ~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~--------------~~~~~~~el  257 (320)
T PLN02723        192 WTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS--------------QTLLPAEEL  257 (320)
T ss_pred             ecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC--------------CCCCCHHHH
Confidence            68889998887767899999999988           46999999999997764321              223333444


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc-CCCCCCC
Q 030946           91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE-ELPEVSE  167 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~-g~p~~~~  167 (168)
                      .+.+..   .+++++++||+||++|.              ||+.++..|+.+||++|++|+||+.+|... .+|++.+
T Consensus       258 ~~~~~~---~gi~~~~~iv~yC~sG~--------------~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~  318 (320)
T PLN02723        258 KKRFEQ---EGISLDSPIVASCGTGV--------------TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS  318 (320)
T ss_pred             HHHHHh---cCCCCCCCEEEECCcHH--------------HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence            444433   67889999999999997              999999999999999999999999999875 6888765

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.83  E-value=7.3e-21  Score=153.59  Aligned_cols=133  Identities=26%  Similarity=0.383  Sum_probs=99.2

Q ss_pred             hhhhHhhhhhhhhcc--------------cceecHHHHHHHhhcCCeEEEecCChhhhh-----------hcCCCCcEEe
Q 030946            4 LSLWIKSVEVFYLLQ--------------VRSVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINV   58 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~--------------~~~i~~~~l~~~l~~~~~~liDvR~~~e~~-----------~ghIpgAi~i   58 (168)
                      +..|..++.++....              -..++.+++...++.++.+|||+|++.||.           .||||||+|+
T Consensus       123 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i  202 (281)
T PRK11493        123 LAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNV  202 (281)
T ss_pred             HHHHHHcCCCccCCCCCCCCCcccccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCC
Confidence            567877766543321              123455666666666678999999999995           6999999999


Q ss_pred             chhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH
Q 030946           59 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL  138 (168)
Q Consensus        59 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~  138 (168)
                      |+..+...               +.+...+++.+++.   ..+++++++||+||++|.              ||..++..
T Consensus       203 ~~~~~~~~---------------~~~~~~~~l~~~~~---~~g~~~~~~ii~yC~~G~--------------~A~~~~~~  250 (281)
T PRK11493        203 PWTELVRE---------------GELKTTDELDAIFF---GRGVSFDRPIIASCGSGV--------------TAAVVVLA  250 (281)
T ss_pred             CHHHhcCC---------------CCcCCHHHHHHHHH---hcCCCCCCCEEEECCcHH--------------HHHHHHHH
Confidence            99876431               11111222233332   367888999999999997              99999999


Q ss_pred             HHHcCccceeEccccHHHHHh-cCCCCCCCC
Q 030946          139 LVLNGYKNVYHLEGGLYKWFK-EELPEVSEE  168 (168)
Q Consensus       139 L~~~G~~~v~~l~GG~~~w~~-~g~p~~~~~  168 (168)
                      |+.+||+||++|+||+.+|.. .++|++.+.
T Consensus       251 l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~~  281 (281)
T PRK11493        251 LATLDVPNVKLYDGAWSEWGARADLPVEPAK  281 (281)
T ss_pred             HHHcCCCCceeeCCCHHHHccCCCCCcCCCC
Confidence            999999999999999999998 799998763

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=1.9e-20  Score=127.94  Aligned_cols=86  Identities=27%  Similarity=0.379  Sum_probs=69.8

Q ss_pred             CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeC
Q 030946           34 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  113 (168)
Q Consensus        34 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~  113 (168)
                      ++.+|||+|++.+|..||||||+|+|+..+...                        .+.++.  ....+++++||+||.
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~~~------------------------~~~~~~--~~~~~~~~~ivv~c~   64 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAALVLR------------------------SQELQA--LEAPGRATRYVLTCD   64 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHhcCC------------------------HHHHHH--hhcCCCCCCEEEEeC
Confidence            478999999999999999999999998654321                        111111  122467899999999


Q ss_pred             CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          114 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       114 ~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      +|.              ++..+++.|+..||+||++|+||+.+|.+
T Consensus        65 ~g~--------------~s~~~~~~l~~~G~~~v~~l~GG~~~W~~   96 (96)
T cd01529          65 GSL--------------LARFAAQELLALGGKPVALLDGGTSAWVA   96 (96)
T ss_pred             ChH--------------HHHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence            987              89999999999999999999999999963

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.83  E-value=2.5e-20  Score=124.29  Aligned_cols=88  Identities=42%  Similarity=0.638  Sum_probs=75.3

Q ss_pred             HHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCC
Q 030946           27 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA  106 (168)
Q Consensus        27 l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (168)
                      +.+++..++.+|||+|++.+|..+|||||+|+|+..+....                              .....++++
T Consensus         2 ~~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~~~~------------------------------~~~~~~~~~   51 (89)
T cd00158           2 LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLSELEERA------------------------------ALLELDKDK   51 (89)
T ss_pred             hHHHhcCCCeEEEECCCHHHHhccccCCCEecchHHHhhHH------------------------------HhhccCCCC
Confidence            34455556899999999999999999999999998765421                              124568899


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHH
Q 030946          107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus       107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~  158 (168)
                      +||+||+++.              ++..+++.|+..||.++++|.||+.+|.
T Consensus        52 ~vv~~c~~~~--------------~a~~~~~~l~~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          52 PIVVYCRSGN--------------RSARAAKLLRKAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             eEEEEeCCCc--------------hHHHHHHHHHHhCcccEEEecCChhhcC
Confidence            9999999987              9999999999999999999999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.83  E-value=3.9e-20  Score=125.73  Aligned_cols=88  Identities=33%  Similarity=0.423  Sum_probs=70.0

Q ss_pred             HhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEE
Q 030946           30 LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKII  109 (168)
Q Consensus        30 ~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV  109 (168)
                      ++.+++.+|||+|++.||..+|||||+|+|+..+....                              .....+++++||
T Consensus         5 ~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~~~~------------------------------~~~~~~~~~~iv   54 (92)
T cd01532           5 LLAREEIALIDVREEDPFAQSHPLWAANLPLSRLELDA------------------------------WVRIPRRDTPIV   54 (92)
T ss_pred             hhcCCCeEEEECCCHHHHhhCCcccCeeCCHHHHHhhh------------------------------HhhCCCCCCeEE
Confidence            34556899999999999999999999999987643210                              001123578999


Q ss_pred             EEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          110 VACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       110 ~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      +||.+|..            ..|..+++.|++.||++|++|.||+.+|.+
T Consensus        55 l~c~~G~~------------~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~   92 (92)
T cd01532          55 VYGEGGGE------------DLAPRAARRLSELGYTDVALLEGGLQGWRA   92 (92)
T ss_pred             EEeCCCCc------------hHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence            99999871            126899999999999999999999999974

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.83  E-value=4.7e-20  Score=154.45  Aligned_cols=104  Identities=29%  Similarity=0.400  Sum_probs=89.5

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      +..|+++++.+++++ +.+|||+|++.||..||||||+|+|+..+....                           .   
T Consensus         2 v~~is~~el~~~l~~-~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~~~~---------------------------~---   50 (376)
T PRK08762          2 IREISPAEARARAAQ-GAVLIDVREAHERASGQAEGALRIPRGFLELRI---------------------------E---   50 (376)
T ss_pred             CceeCHHHHHHHHhC-CCEEEECCCHHHHhCCcCCCCEECCHHHHHHHH---------------------------h---
Confidence            567999999999976 589999999999999999999999987653210                           0   


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ....+++++||+||++|.              ||..+++.|+..||++|++|+||+.+|++.|+|++..
T Consensus        51 ~~~~~~~~~IvvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  105 (376)
T PRK08762         51 THLPDRDREIVLICASGT--------------RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERP  105 (376)
T ss_pred             hhcCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccc
Confidence            012367899999999987              9999999999999999999999999999999998754

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=5.3e-20  Score=129.46  Aligned_cols=102  Identities=22%  Similarity=0.335  Sum_probs=78.9

Q ss_pred             cceecHHHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           19 VRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      ++.|+++++.+++..  ++.+|||||++ ||..||||||+|+|+..+....                       .++.+.
T Consensus         1 ~~~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~~~~-----------------------~~~~~~   56 (113)
T cd01531           1 VSYISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFKAQL-----------------------NQLVQL   56 (113)
T ss_pred             CCcCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHhhCH-----------------------HHHHHH
Confidence            457899999999876  35789999999 9999999999999998764321                       111111


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH--------cCccceeEccccHHHHHhc
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~--------~G~~~v~~l~GG~~~w~~~  160 (168)
                         ....++++||+||.+++             .|+..++..|.+        .|+.||++|.||+.+|.++
T Consensus        57 ---~~~~~~~~iv~yC~~~~-------------~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          57 ---LSGSKKDTVVFHCALSQ-------------VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             ---HhcCCCCeEEEEeecCC-------------cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence               22367789999998543             288888877654        4999999999999999875

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.81  E-value=5.9e-20  Score=147.79  Aligned_cols=135  Identities=24%  Similarity=0.373  Sum_probs=107.2

Q ss_pred             hhhhhHhhhhhhhhccc--------------ceecHHHHHHHhhcCCeEEEecCChhhhhh----------cCCCCcEEe
Q 030946            3 KLSLWIKSVEVFYLLQV--------------RSVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINV   58 (168)
Q Consensus         3 ~~~~~~~~~~~~~~~~~--------------~~i~~~~l~~~l~~~~~~liDvR~~~e~~~----------ghIpgAi~i   58 (168)
                      .++.|..++.++.....              ..++.++++...+....+|||+|++.+|..          ||||||+|+
T Consensus       125 G~~~W~~~g~p~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNi  204 (285)
T COG2897         125 GLPAWKAAGLPLETEPPEPPPTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINI  204 (285)
T ss_pred             CHHHHHHcCCCccCCCCCCCCccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCc
Confidence            36789999887763221              236677788888877888999999999998          999999999


Q ss_pred             chhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH
Q 030946           59 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL  138 (168)
Q Consensus        59 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~  138 (168)
                      |+..+.++              .+.|...++...+.+   ..+++++++||+||++|.              +|+.++..
T Consensus       205 pw~~~~~~--------------~~~~~~~~~~~~l~~---~~gi~~~~~vI~yCgsG~--------------~As~~~~a  253 (285)
T COG2897         205 PWTDLVDD--------------GGLFKSPEEIARLYA---DAGIDPDKEVIVYCGSGV--------------RASVTWLA  253 (285)
T ss_pred             CHHHHhcC--------------CCccCcHHHHHHHHH---hcCCCCCCCEEEEcCCch--------------HHHHHHHH
Confidence            99988762              122333333344432   378999999999999998              99999999


Q ss_pred             HHHcCccceeEccccHHHHHhc-CCCCCCCC
Q 030946          139 LVLNGYKNVYHLEGGLYKWFKE-ELPEVSEE  168 (168)
Q Consensus       139 L~~~G~~~v~~l~GG~~~w~~~-g~p~~~~~  168 (168)
                      |+.+|+.++++|+|++.+|-+. +.|+++++
T Consensus       254 l~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         254 LAELGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             HHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence            9999999899999999999775 56998764

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.80  E-value=1e-19  Score=160.15  Aligned_cols=133  Identities=19%  Similarity=0.246  Sum_probs=103.1

Q ss_pred             hhhhHhhhhhhhhccc--------------ceecHHHHHHHhhcCCeEEEecCChhhhh--------hcCCCCcEEechh
Q 030946            4 LSLWIKSVEVFYLLQV--------------RSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIY   61 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~~--------------~~i~~~~l~~~l~~~~~~liDvR~~~e~~--------~ghIpgAi~ip~~   61 (168)
                      +..|..++.++.....              ..++.+++.+.+++++.+|||+|++.||.        .||||||+|+|+.
T Consensus       117 ~~aW~~ag~p~~~~~~~~~~~~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~  196 (610)
T PRK09629        117 VLAWEAQALPLSTDVPPVAGGPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWT  196 (610)
T ss_pred             HHHHHHcCCccccCCCCCCCcceeeccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHH
Confidence            5678888766543211              14788999999887788999999999995        6999999999997


Q ss_pred             hHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH
Q 030946           62 RLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL  141 (168)
Q Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~  141 (168)
                      .++...              +.+...+++++++..   .+++++++||+||++|.              +|+.+++.|+.
T Consensus       197 ~~~~~~--------------~~lk~~~el~~~~~~---~Gi~~~~~VVvYC~sG~--------------rAa~~~~~L~~  245 (610)
T PRK09629        197 AGMDKA--------------RNLRIRQDMPEILRD---LGITPDKEVITHCQTHH--------------RSGFTYLVAKA  245 (610)
T ss_pred             HhcCCC--------------CCCCCHHHHHHHHHH---cCCCCCCCEEEECCCCh--------------HHHHHHHHHHH
Confidence            654321              122333334444433   67889999999999997              99999999999


Q ss_pred             cCccceeEccccHHHHHhc-CCCCCCC
Q 030946          142 NGYKNVYHLEGGLYKWFKE-ELPEVSE  167 (168)
Q Consensus       142 ~G~~~v~~l~GG~~~w~~~-g~p~~~~  167 (168)
                      +||+||++|+|||.+|... ++|++..
T Consensus       246 lG~~~V~~YdGsw~eW~~~~~lPv~~~  272 (610)
T PRK09629        246 LGYPRVKAYAGSWGEWGNHPDTPVEVP  272 (610)
T ss_pred             cCCCCcEEeCCCHHHHhCCCCCccccC
Confidence            9999999999999999875 6888753

>PRK01415 hypothetical protein; Validated

Probab=99.80  E-value=2e-19  Score=142.28  Aligned_cols=103  Identities=26%  Similarity=0.437  Sum_probs=87.2

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      -..|+|+++.+++++++.+|||||++.||..||||||+|+|...+..                        +++++.  .
T Consensus       111 g~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e------------------------~~~~~~--~  164 (247)
T PRK01415        111 GEYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ------------------------FPAWVQ--Q  164 (247)
T ss_pred             ccccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh------------------------hHHHHh--h
Confidence            45799999999998889999999999999999999999999876532                        111211  1


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      ...++++++|++||.+|.              ||..++..|++.||++|+.|.||+.+|.+..
T Consensus       165 ~~~~~k~k~Iv~yCtgGi--------------Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~  213 (247)
T PRK01415        165 NQELLKGKKIAMVCTGGI--------------RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT  213 (247)
T ss_pred             hhhhcCCCeEEEECCCCh--------------HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence            134578899999999998              9999999999999999999999999998764

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.80  E-value=4.1e-19  Score=123.30  Aligned_cols=97  Identities=40%  Similarity=0.602  Sum_probs=81.9

Q ss_pred             HHHHhhcCCeEEEecCChhhhhhcCCCC-cEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCC
Q 030946           27 ALRLQKENNFVILDVRPEAEFKEAHPPG-AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKD  105 (168)
Q Consensus        27 l~~~l~~~~~~liDvR~~~e~~~ghIpg-Ai~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (168)
                      .......++.++||||.+.||..+|||| ++|+|..++.....                              ....+++
T Consensus        12 ~~~~~~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~~~~------------------------------~~~~~~~   61 (110)
T COG0607          12 AALLLAGEDAVLLDVREPEEYERGHIPGAAINIPLSELKAAEN------------------------------LLELPDD   61 (110)
T ss_pred             HHHhhccCCCEEEeccChhHhhhcCCCcceeeeecccchhhhc------------------------------ccccCCC
Confidence            3333444589999999999999999999 99999988754210                              0115689


Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946          106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus       106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ++||+||.+|.              ||..++..|+..||++++.+.||+.+|...++|++.+
T Consensus        62 ~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~  109 (110)
T COG0607          62 DPIVVYCASGV--------------RSAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG  109 (110)
T ss_pred             CeEEEEeCCCC--------------ChHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence            99999999998              9999999999999998889999999999999998865

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.80  E-value=4.8e-19  Score=141.36  Aligned_cols=104  Identities=31%  Similarity=0.459  Sum_probs=84.4

Q ss_pred             cccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           17 LQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      .....|+++++.++++++      +.+|||||++.||..||||||+|+|+..+.. +                       
T Consensus       107 ~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-~-----------------------  162 (257)
T PRK05320        107 GRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-F-----------------------  162 (257)
T ss_pred             CcCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-h-----------------------
Confidence            345789999999988652      4799999999999999999999999976532 1                       


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946           91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                      +.++.. ....+ ++++||+||.+|.              ||..++..|++.||++|+.|.||+.+|.+.
T Consensus       163 ~~~l~~-~~~~~-kdk~IvvyC~~G~--------------Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        163 PEALAA-HRADL-AGKTVVSFCTGGI--------------RCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             HHHHHh-hhhhc-CCCeEEEECCCCH--------------HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            111111 11123 7889999999998              999999999999999999999999999875

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.79  E-value=5.4e-19  Score=144.71  Aligned_cols=103  Identities=26%  Similarity=0.426  Sum_probs=86.6

Q ss_pred             ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      ....++++++.+++.+++.+|||||++.||..||||||+|+|+..+...                        ..++.. 
T Consensus       110 ~~~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~~------------------------~~~l~~-  164 (314)
T PRK00142        110 VGTYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFREF------------------------PPWVEE-  164 (314)
T ss_pred             CCcccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhhh------------------------HHHHHH-
Confidence            3467999999999988889999999999999999999999999876321                        111111 


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                       .....++++||+||.+|.              |+..++..|.+.||++|+.|.||+.+|.+.
T Consensus       165 -~~~~~kdk~IvvyC~~G~--------------Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        165 -NLDPLKDKKVVMYCTGGI--------------RCEKASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             -hcCCCCcCeEEEECCCCc--------------HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence             123458899999999998              999999999999999999999999999875

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.79  E-value=4.6e-19  Score=142.65  Aligned_cols=124  Identities=24%  Similarity=0.277  Sum_probs=100.4

Q ss_pred             ccceecHHHHHHHhhcC-----CeEEEecCCh--hhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           18 QVRSVEAKEALRLQKEN-----NFVILDVRPE--AEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~-----~~~liDvR~~--~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ....|++++|.+.++++     ++.+++++..  .+|..+|||||+++++.........          ..+++...+.+
T Consensus         9 ~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~----------~~~~lp~~e~f   78 (285)
T COG2897           9 SEFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVP----------LPHMLPSPEQF   78 (285)
T ss_pred             cceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCC----------CCCCCCCHHHH
Confidence            45679999999999855     6666666665  8999999999999999887653321          23445444444


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      .+.+   ...++.++++||+|+..+.             ..|.+++|.|+.+|++||++|+||+.+|+++|+|++.+
T Consensus        79 a~~~---~~~GI~~d~tVVvYdd~~~-------------~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~  139 (285)
T COG2897          79 AKLL---GELGIRNDDTVVVYDDGGG-------------FFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETE  139 (285)
T ss_pred             HHHH---HHcCCCCCCEEEEECCCCC-------------eehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCC
Confidence            4544   4599999999999999887             48999999999999999999999999999999999864

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.79  E-value=7.1e-19  Score=121.82  Aligned_cols=80  Identities=24%  Similarity=0.375  Sum_probs=67.6

Q ss_pred             CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC
Q 030946           35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT  114 (168)
Q Consensus        35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~  114 (168)
                      ...+||+|++.||..||||||+|+|+.++....                              .....+++++||+||.+
T Consensus        18 ~~~lIDvR~~~ef~~ghIpgAinip~~~l~~~l------------------------------~~~~~~~~~~vvlyC~~   67 (101)
T TIGR02981        18 AEHWIDVRIPEQYQQEHIQGAINIPLKEIKEHI------------------------------ATAVPDKNDTVKLYCNA   67 (101)
T ss_pred             CCEEEECCCHHHHhcCCCCCCEECCHHHHHHHH------------------------------HHhCCCCCCeEEEEeCC
Confidence            677999999999999999999999997764321                              01123567899999999


Q ss_pred             CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          115 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       115 g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      |.              +|..++..|.+.||++++++ ||+.+|..
T Consensus        68 G~--------------rS~~aa~~L~~~G~~~v~~~-GG~~~~~~   97 (101)
T TIGR02981        68 GR--------------QSGMAKDILLDMGYTHAENA-GGIKDIAM   97 (101)
T ss_pred             CH--------------HHHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence            98              99999999999999999986 99999975

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.78  E-value=9e-19  Score=123.23  Aligned_cols=99  Identities=22%  Similarity=0.422  Sum_probs=73.5

Q ss_pred             ceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946           20 RSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF   93 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
                      +.|+++++.+++.++      +.+|||||++ ||..||||||+|+|+..+.... .                      +.
T Consensus         2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~~~~-~----------------------~~   57 (113)
T cd01443           2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCYQTL-P----------------------QV   57 (113)
T ss_pred             cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHHHHH-H----------------------HH
Confidence            568999999999874      5899999999 9999999999999998754321 0                      11


Q ss_pred             HHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHH----HcCc--cceeEccccHHHHH
Q 030946           94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LNGY--KNVYHLEGGLYKWF  158 (168)
Q Consensus        94 ~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~----~~G~--~~v~~l~GG~~~w~  158 (168)
                      ++.   ....+.++||+||.+++             .|+..++..|.    +.||  .++++|.||+.+|.
T Consensus        58 ~~~---~~~~~~~~iv~~C~~~g-------------~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          58 YAL---FSLAGVKLAIFYCGSSQ-------------GRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             HHH---hhhcCCCEEEEECCCCC-------------cccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            110   11234578999999753             27777776544    4575  68999999999996

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.78  E-value=1.4e-18  Score=146.32  Aligned_cols=104  Identities=26%  Similarity=0.423  Sum_probs=88.6

Q ss_pred             cccceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           17 LQVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      .....|+++++.++++++ +.+|||+|++.||..+|||||+|+|+..+....                            
T Consensus       284 ~~~~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~~~~----------------------------  335 (392)
T PRK07878        284 AAGSTITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSEILSGE----------------------------  335 (392)
T ss_pred             CCCCccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHHhcchh----------------------------
Confidence            345679999999999764 578999999999999999999999998764311                            


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  164 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~  164 (168)
                        ....++++++||+||.+|.              ||..+++.|++.||++|++|.||+.+|..+..|.
T Consensus       336 --~~~~l~~d~~iVvyC~~G~--------------rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~~  388 (392)
T PRK07878        336 --ALAKLPQDRTIVLYCKTGV--------------RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDPS  388 (392)
T ss_pred             --HHhhCCCCCcEEEEcCCCh--------------HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCCC
Confidence              1134678899999999987              9999999999999999999999999999886553

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.77  E-value=2.2e-18  Score=119.91  Aligned_cols=80  Identities=25%  Similarity=0.363  Sum_probs=67.1

Q ss_pred             CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC
Q 030946           35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT  114 (168)
Q Consensus        35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~  114 (168)
                      +-++||+|++.||..+|||||+|+|+..+....                              .....+++++||+||.+
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~~l~~~l------------------------------~~l~~~~~~~IVlyC~~   69 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKERI------------------------------ATAVPDKNDTVKLYCNA   69 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHHHHHHHH------------------------------HhcCCCCCCeEEEEeCC
Confidence            567999999999999999999999997653311                              11234567889999999


Q ss_pred             CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          115 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       115 g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      |.              ||..++..|.+.||+++++ .||+.+|.-
T Consensus        70 G~--------------rS~~aa~~L~~~G~~~v~~-~GG~~~~~~   99 (104)
T PRK10287         70 GR--------------QSGQAKEILSEMGYTHAEN-AGGLKDIAM   99 (104)
T ss_pred             Ch--------------HHHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence            97              9999999999999999987 699999974

>PRK07411 hypothetical protein; Validated

Probab=99.74  E-value=1.2e-17  Score=140.42  Aligned_cols=108  Identities=27%  Similarity=0.430  Sum_probs=87.8

Q ss_pred             cccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           17 LQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      ..+..|+++++.++++++  +.+|||||++.||..||||||+|+|+.++.....                      .+  
T Consensus       279 ~~~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~~~----------------------~~--  334 (390)
T PRK07411        279 AEIPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENGPG----------------------VE--  334 (390)
T ss_pred             cccCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcccc----------------------hH--
Confidence            345689999999999764  5799999999999999999999999987643110                      00  


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                         ....+.++++||+||.+|.              ||..+++.|++.||++ +.|.||+.+|.+...|..+
T Consensus       335 ---~l~~l~~d~~IVvyC~~G~--------------RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~~p  388 (390)
T PRK07411        335 ---KVKELLNGHRLIAHCKMGG--------------RSAKALGILKEAGIEG-TNVKGGITAWSREVDPSVP  388 (390)
T ss_pred             ---HHhhcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCCCC
Confidence               1123567899999999997              9999999999999985 6799999999998777654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.73  E-value=1.3e-17  Score=138.84  Aligned_cols=97  Identities=26%  Similarity=0.441  Sum_probs=81.0

Q ss_pred             ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      ....++++++.+...  +.+|||+|++.||..+|||||+|+|+..+...+.                             
T Consensus       259 ~~~~i~~~~~~~~~~--~~~IIDVR~~~ef~~ghIpgAinip~~~l~~~~~-----------------------------  307 (355)
T PRK05597        259 FGEVLDVPRVSALPD--GVTLIDVREPSEFAAYSIPGAHNVPLSAIREGAN-----------------------------  307 (355)
T ss_pred             cccccCHHHHHhccC--CCEEEECCCHHHHccCcCCCCEEeCHHHhhhccc-----------------------------
Confidence            345788888885542  5799999999999999999999999987654221                             


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                       ...++++++||+||++|.              +|.++++.|++.||++|++|+||+.+|.++
T Consensus       308 -~~~~~~~~~IvvyC~~G~--------------rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~  355 (355)
T PRK05597        308 -PPSVSAGDEVVVYCAAGV--------------RSAQAVAILERAGYTGMSSLDGGIEGWLDS  355 (355)
T ss_pred             -cccCCCCCeEEEEcCCCH--------------HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence             123567889999999987              999999999999999999999999999763

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.72  E-value=2e-17  Score=135.19  Aligned_cols=111  Identities=27%  Similarity=0.342  Sum_probs=75.6

Q ss_pred             CeEEEecCChhhhhhcCCCCcEEechhhHHhhh--------hHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCC
Q 030946           35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEW--------TAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA  106 (168)
Q Consensus        35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (168)
                      ..+|||||++.||..||||||+|+|+.+...+.        .+...++..+..+.+     ..+++++++ .....+++.
T Consensus         2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~-----~~l~~~i~~-~~~~~~~~~   75 (311)
T TIGR03167         2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVS-----PNLAAHVEQ-WRAFADGPP   75 (311)
T ss_pred             CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhh-----HHHHHHHHH-HHhhcCCCC
Confidence            468999999999999999999999996532211        111112222111111     133444444 223345556


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCC
Q 030946          107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus       107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~  165 (168)
                      .||+||..++             .||..+++.|...|| ++++|.||+.+|+..+.+..
T Consensus        76 ~vvvyC~~gG-------------~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~  120 (311)
T TIGR03167        76 QPLLYCWRGG-------------MRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQL  120 (311)
T ss_pred             cEEEEECCCC-------------hHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhh
Confidence            6999996433             299999999999999 69999999999998876543

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.71  E-value=4e-17  Score=135.12  Aligned_cols=120  Identities=23%  Similarity=0.259  Sum_probs=80.3

Q ss_pred             cHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhh--------HHHHHHHhhhhhccccCCCCCchHHH
Q 030946           23 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT--------AWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        23 ~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      +..++.+.+.+ +.+|||||++.||..||||||+|+|+.+...+..        +...+...+.    .+. ..++.+.+
T Consensus         4 ~~~~~~~~~~~-~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~----~lv-~~~l~~~~   77 (345)
T PRK11784          4 DAQDFRALFLN-DTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGH----ALV-AGNIAAHR   77 (345)
T ss_pred             cHHHHHHHHhC-CCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhh----hhc-chhHHHHH
Confidence            45667766644 7899999999999999999999999965432110        1111111110    011 12223333


Q ss_pred             HhhhhccC-CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946           95 QTGVESQL-DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  163 (168)
Q Consensus        95 ~~~~~~~~-~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p  163 (168)
                      .+ ..... .++++||+||..|+             .||..+++.|...|| ++++|.||+.+|+..+.+
T Consensus        78 ~~-~~~~~~~~~~~ivvyC~rgG-------------~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~  132 (345)
T PRK11784         78 EE-AWADFPRANPRGLLYCWRGG-------------LRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVID  132 (345)
T ss_pred             HH-HHHhcccCCCeEEEEECCCC-------------hHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHH
Confidence            22 11122 37889999996544             399999999999999 599999999999987653

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.71  E-value=1.1e-16  Score=115.36  Aligned_cols=123  Identities=20%  Similarity=0.240  Sum_probs=79.3

Q ss_pred             eecHHHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           21 SVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        21 ~i~~~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      .|+++++.+++++  .+.+|||+|+..+|..+|||||+|+|+..+..+........     ...++    ..++....  
T Consensus         1 ~is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~--   69 (132)
T cd01446           1 TIDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKIL-----LQQLL----SCPEDRDR--   69 (132)
T ss_pred             CcCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchh-----hhhhc----CCHHHHHH--
Confidence            3789999999975  37999999999999999999999999987643221100000     00001    11111111  


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH--cCccceeEccccHHHHHhc
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL--NGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~--~G~~~v~~l~GG~~~w~~~  160 (168)
                      .... ++++|||||.++..|+-   .  ....++..++..|..  .|+.+|++|.||+.+|.+.
T Consensus        70 l~~~-~~~~VVvYd~~~~~~~~---~--~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          70 LRRG-ESLAVVVYDESSSDRER---L--REDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             HhcC-CCCeEEEEeCCCcchhh---c--cccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            1122 67899999998863100   0  001246666677776  3667899999999999764

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.64  E-value=5.4e-16  Score=129.63  Aligned_cols=95  Identities=21%  Similarity=0.300  Sum_probs=77.4

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCC---CcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPP---GAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIp---gAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      .+++++++.+++.+++.+|||||++.||..+|||   ||+|+|+..+....                        .+.+ 
T Consensus       271 ~~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~~~~------------------------~~~~-  325 (370)
T PRK05600        271 ARTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAITDDA------------------------DILH-  325 (370)
T ss_pred             cccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhhcch------------------------hhhh-
Confidence            3789999999998777899999999999999998   59999998874311                        0000 


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc-eeEccccHH
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLY  155 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~-v~~l~GG~~  155 (168)
                       ....++++ +||+||.+|.              ||..++..|++.||++ |+.|.||+.
T Consensus       326 -~l~~~~~~-~Ivv~C~sG~--------------RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        326 -ALSPIDGD-NVVVYCASGI--------------RSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             -hccccCCC-cEEEECCCCh--------------hHHHHHHHHHHcCCCCceEEeccccC
Confidence             11234444 9999999998              9999999999999986 999999985

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.54  E-value=9.2e-15  Score=116.91  Aligned_cols=101  Identities=31%  Similarity=0.509  Sum_probs=86.9

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      .-|+|+++.++++++++++||+|+..||+.||+.|||+.+...+.                        ++++++++ . 
T Consensus       113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr------------------------efP~~v~~-~-  166 (308)
T COG1054         113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR------------------------EFPAWVEE-N-  166 (308)
T ss_pred             CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhhh------------------------hhHHHHHH-H-
Confidence            358999999999999999999999999999999999999987763                        34555554 2 


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                      ....++++||.||.+|.              |+..+..+|...||++|+.|.||+-.|.+.
T Consensus       167 ~~~~~~KkVvmyCTGGI--------------RCEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         167 LDLLKDKKVVMYCTGGI--------------RCEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             HHhccCCcEEEEcCCce--------------eehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            23346679999999998              999999999999999999999999888654

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.52  E-value=4.3e-14  Score=112.47  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=99.2

Q ss_pred             ceecHHHHHHHhhcCCeEEEecC---------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           20 RSVEAKEALRLQKENNFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR---------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ..++++.+.+.+..++..|||.-         ...||..-|||||+++.++.....-          ....++++..+.+
T Consensus         5 ~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s----------~~~~~~lp~~e~F   74 (286)
T KOG1529|consen    5 SIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPS----------SPYRHMLPTAEHF   74 (286)
T ss_pred             cccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCC----------CcccccCccHHHH
Confidence            35788899999988889999986         4567888999999999998764321          2234555555555


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeC--CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           91 PEFLQTGVESQLDKDAKIIVACA--TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~--~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ++++..   .++.+++.+|||+.  .|.             ..|.+++|+++-+|+++|.+|.||+..|+++|.|+.++
T Consensus        75 a~y~~~---lGi~n~d~vViYd~~~~Gm-------------~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~  137 (286)
T KOG1529|consen   75 AEYASR---LGVDNGDHVVIYDRGDGGM-------------FSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSS  137 (286)
T ss_pred             HHHHHh---cCCCCCCeEEEEcCCCcce-------------eehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccc
Confidence            666655   89999999999999  443             57889999999999999999999999999999999875

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.41  E-value=7.6e-13  Score=114.25  Aligned_cols=81  Identities=22%  Similarity=0.295  Sum_probs=66.9

Q ss_pred             HHHHHHhhcCCeEEEecCChhhhhhcCCCC----cEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946           25 KEALRLQKENNFVILDVRPEAEFKEAHPPG----AINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  100 (168)
Q Consensus        25 ~~l~~~l~~~~~~liDvR~~~e~~~ghIpg----Ai~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (168)
                      .+..+.+.. +.++||||++.||..+||||    |+|+|+..+...                                ..
T Consensus       398 ~~~~~~~~~-~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~~~--------------------------------~~  444 (482)
T PRK01269        398 VETVSELPP-DDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLSTQ--------------------------------FG  444 (482)
T ss_pred             hHHHHhcCC-CCEEEECCCHHHHhcCCCCCCCceEEECCHHHHHHH--------------------------------Hh
Confidence            334444433 78999999999999999999    999999877532                                12


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccc
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEG  152 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~G  152 (168)
                      .++++++||+||.+|.              ||..++..|...||+||++|.+
T Consensus       445 ~l~~~~~iivyC~~G~--------------rS~~aa~~L~~~G~~nv~~y~~  482 (482)
T PRK01269        445 DLDQSKTYLLYCDRGV--------------MSRLQALYLREQGFSNVKVYRP  482 (482)
T ss_pred             hcCCCCeEEEECCCCH--------------HHHHHHHHHHHcCCccEEecCC
Confidence            3578889999999998              9999999999999999998753

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.40  E-value=5.9e-13  Score=107.96  Aligned_cols=107  Identities=23%  Similarity=0.385  Sum_probs=80.6

Q ss_pred             hcccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           16 LLQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ...++.|+++.|+.+++..      .++|||+|-+.||.+|||+||+|+.........                      
T Consensus       152 ~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~~~~----------------------  209 (325)
T KOG3772|consen  152 SQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELLQDF----------------------  209 (325)
T ss_pred             cccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhhhhh----------------------
Confidence            4668899999999999752      477999999999999999999999986653321                      


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH------------cCccceeEccccHHHH
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL------------NGYKNVYHLEGGLYKW  157 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~------------~G~~~v~~l~GG~~~w  157 (168)
                         |........-.....+||||.-..             .|+..+|..|+.            +-|..+|+|+|||..|
T Consensus       210 ---f~~~~~~~~~~~~~i~IFhCefSq-------------~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~f  273 (325)
T KOG3772|consen  210 ---FLLKDGVPSGSKRVILIFHCEFSQ-------------ERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEF  273 (325)
T ss_pred             ---hccccccccccCceeEEEEeeecc-------------ccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHH
Confidence               110000000123457999999987             599999999994            3567899999999999


Q ss_pred             Hhc
Q 030946          158 FKE  160 (168)
Q Consensus       158 ~~~  160 (168)
                      ...
T Consensus       274 f~~  276 (325)
T KOG3772|consen  274 FSN  276 (325)
T ss_pred             HHh
Confidence            764

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.22  E-value=2.7e-11  Score=98.93  Aligned_cols=108  Identities=23%  Similarity=0.335  Sum_probs=84.9

Q ss_pred             cceecHHHHHHHhhc-CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           19 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~-~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      -.+|+..|+++.+++ ...++||||++.||+..|+|+|+|||+.++.....                      .+.    
T Consensus       316 ~~Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~----------------------~~~----  369 (427)
T KOG2017|consen  316 DERVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG----------------------KKL----  369 (427)
T ss_pred             hhcccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh----------------------hhh----
Confidence            457999999999987 48999999999999999999999999998865321                      000    


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCcc-ceeEccccHHHHHhcCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK-NVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~-~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      ....-...++|+++|..|.              .|.++.+.|++.... +|.-+.||+.+|...-.|..+
T Consensus       370 ~~~~~~~~~~I~ViCrrGN--------------dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~vd~~fP  425 (427)
T KOG2017|consen  370 QGDLNTESKDIFVICRRGN--------------DSQRAVRILREKFPDSSVRDVIGGLKAWAAKVDPNFP  425 (427)
T ss_pred             cccccccCCCEEEEeCCCC--------------chHHHHHHHHhhCCchhhhhhhhHHHHHHHhcCcCCC
Confidence            0011234567999999998              899999999986653 577889999999987655543

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.11  E-value=1.2e-10  Score=92.99  Aligned_cols=125  Identities=23%  Similarity=0.354  Sum_probs=90.7

Q ss_pred             hhhhHhhhhhhhhcccc----------eecHHHHHHH-------hhcCCeEEEecCChhhhh-----------hcCCCCc
Q 030946            4 LSLWIKSVEVFYLLQVR----------SVEAKEALRL-------QKENNFVILDVRPEAEFK-----------EAHPPGA   55 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~~~----------~i~~~~l~~~-------l~~~~~~liDvR~~~e~~-----------~ghIpgA   55 (168)
                      +..|++++.++.+..+.          .++..-+...       +...+...||.|...+|.           .||||||
T Consensus       124 ~~~Wk~~g~~~~s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa  203 (286)
T KOG1529|consen  124 FRAWKAAGGPVDSSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGA  203 (286)
T ss_pred             HHHHHHcCCccccccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCc
Confidence            67899998888766642          1222222221       223478999999998884           6899999


Q ss_pred             EEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHH
Q 030946           56 INVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA  135 (168)
Q Consensus        56 i~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a  135 (168)
                      +|+|+.++.....              ..+..+++....   ...++..++++|+-|+.|.              .++..
T Consensus       204 ~n~P~~~~~~~~g--------------~~k~~edl~~~f---~~~~l~~~~p~~~sC~~Gi--------------sa~~i  252 (286)
T KOG1529|consen  204 INFPFDEVLDPDG--------------FIKPAEDLKHLF---AQKGLKLSKPVIVSCGTGI--------------SASII  252 (286)
T ss_pred             ccCChHHhccccc--------------ccCCHHHHHHHH---HhcCcccCCCEEEeeccch--------------hHHHH
Confidence            9999998865321              111123333333   3367778999999999998              89999


Q ss_pred             HHHHHHcCccceeEccccHHHHHhc
Q 030946          136 AYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus       136 ~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                      +..|...| .++.+|+|++..|...
T Consensus       253 ~~al~r~g-~~~~lYdGS~~Ew~~~  276 (286)
T KOG1529|consen  253 ALALERSG-PDAKLYDGSWTEWALR  276 (286)
T ss_pred             HHHHHhcC-CCcceecccHHHHhhc
Confidence            99999999 7899999999999854

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.65  E-value=8.5e-08  Score=77.86  Aligned_cols=103  Identities=22%  Similarity=0.332  Sum_probs=78.1

Q ss_pred             hcccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           16 LLQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ...+.+|+++.++..++..      +++|||+|-+.||..|||-.||||.-..-..                        
T Consensus       238 ~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l~------------------------  293 (427)
T COG5105         238 SDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKLG------------------------  293 (427)
T ss_pred             ccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHHH------------------------
Confidence            3456789999999998743      6889999999999999999999997533211                        


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc------------CccceeEccccHHHH
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------------GYKNVYHLEGGLYKW  157 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~------------G~~~v~~l~GG~~~w  157 (168)
                       ..|+    ..-+.-...+|+.|.-..             .|+...|..|+..            =|..|++|+|||..+
T Consensus       294 -~~F~----hkplThp~aLifHCEfSs-------------hRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~f  355 (427)
T COG5105         294 -LLFR----HKPLTHPRALIFHCEFSS-------------HRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKF  355 (427)
T ss_pred             -HHHH----hccccCceeEEEEeeccc-------------ccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHH
Confidence             0111    112344567999999876             5999999999863            367899999999987


Q ss_pred             Hhc
Q 030946          158 FKE  160 (168)
Q Consensus       158 ~~~  160 (168)
                      -+.
T Consensus       356 y~n  358 (427)
T COG5105         356 YSN  358 (427)
T ss_pred             hhc
Confidence            654

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=97.67  E-value=4.3e-05  Score=61.01  Aligned_cols=120  Identities=19%  Similarity=0.204  Sum_probs=74.3

Q ss_pred             eecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhc
Q 030946           21 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVES  100 (168)
Q Consensus        21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (168)
                      .++.+++.+.++.++.+++|+|+    +..||.+|+++.++.++.+...     .....+...+++..+...+-.+    
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~-----~g~l~~ra~~p~~~d~~~~~~~----   71 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLT-----GGNLPVRALFPRSCDDKRFPAR----   71 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHh-----CCCCcceeccCCcccccccccc----
Confidence            46788999999888999999999    6789999999999988765421     1112222223333322222111    


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                        =+...+|.|+.+...|-+-++    ...---..-+.++..|+. ++.|.|||..++++
T Consensus        72 --c~~v~vilyD~~~~e~e~~~~----~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   72 --CGTVTVILYDESSAEWEEETG----AESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE  124 (343)
T ss_pred             --CCcceeeecccccccccccch----hhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence              133679999998554432100    000001123455667885 99999999988765

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.66  E-value=6.7e-05  Score=60.58  Aligned_cols=117  Identities=22%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             HHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhh-HHHHHH---HhhhhhccccCCCCCchHHHHhhhhc
Q 030946           25 KEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWT-AWDIAR---RAAFAFFGIFSGTEENPEFLQTGVES  100 (168)
Q Consensus        25 ~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (168)
                      +++..++- .+..+||||.+-||..|+.|+++|+|..+--.... +...-+   ..+.++.+-...-+-..+.+..  ..
T Consensus         6 q~~~~~~~-~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~a--sk   82 (334)
T COG2603           6 QDYRALLL-ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEA--SK   82 (334)
T ss_pred             HHHHHHHh-cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHH--HH
Confidence            44444444 48999999999999999999999999854321110 000000   0011111111111111122222  11


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHH-HHcCccceeEccccHHHHH
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-VLNGYKNVYHLEGGLYKWF  158 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L-~~~G~~~v~~l~GG~~~w~  158 (168)
                      ....+.++-++|..|+             .|+...+.+| ...|.+ +--+.||+.+.+
T Consensus        83 ~f~e~~~~Gi~c~rgg-------------~rsk~v~~~l~~~~g~~-~~r~iGGeKalr  127 (334)
T COG2603          83 AFQEENPVGILCARGG-------------LRSKIVQKWLGYAAGID-YPRVIGGEKALR  127 (334)
T ss_pred             HHHHhCCcceeecccc-------------chhHHHHHHHHHHHHhh-hhhhhchHHHHH
Confidence            1233456666799998             6999999999 778875 666779987754

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=96.84  E-value=0.00031  Score=61.43  Aligned_cols=104  Identities=18%  Similarity=0.211  Sum_probs=71.6

Q ss_pred             hhcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      .+..+++|+++++..+   ....++|.|...||..+|+++++|+|+.. ......|.                    .++
T Consensus       617 ~se~~prmsAedl~~~---~~l~v~d~r~~~ef~r~~~s~s~nip~~~-~ea~l~~~--------------------~~l  672 (725)
T KOG1093|consen  617 SSEHCPRISAEDLIWL---KMLYVLDTRQESEFQREHFSDSINIPFNN-HEADLDWL--------------------RFL  672 (725)
T ss_pred             hhhcCccccHHHHHHH---HHHHHHhHHHHHHHHHhhccccccCCccc-hHHHHHHh--------------------hcc
Confidence            4667889999998776   46899999999999999999999999972 11111110                    000


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                         ........+.+|++....+              -+.+....+..+-+.++.++.+|++....
T Consensus       673 ---~~~~~~~~~~~v~~~~~~K--------------~~~e~~~~~~~mk~p~~cil~~~~~~~~~  720 (725)
T KOG1093|consen  673 ---PGIVCSEGKKCVVVGKNDK--------------HAAERLTELYVMKVPRICILHDGFNNIDP  720 (725)
T ss_pred             ---hHhHHhhCCeEEEeccchH--------------HHHHHhhHHHHhcccHHHHHHHHHhhcCc
Confidence               0112235566777776665              66666666666668788899999985443

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=96.32  E-value=0.032  Score=41.37  Aligned_cols=116  Identities=18%  Similarity=0.228  Sum_probs=51.3

Q ss_pred             hhcccceecHHHHHHHhhcCCeEEEecCChhhhhhc---CCCCcE--EechhhHHhhh--------h-HHHHHHHhhhhh
Q 030946           15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEA---HPPGAI--NVQIYRLIKEW--------T-AWDIARRAAFAF   80 (168)
Q Consensus        15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~g---hIpgAi--~ip~~~l~~~~--------~-~~~~~~~~~~~~   80 (168)
                      -+..+..+|+++...+.+-+=..|||.|++.|....   .++|..  |+|+..-....        . ...........+
T Consensus        23 RS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y  102 (164)
T PF13350_consen   23 RSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGMLEFY  102 (164)
T ss_dssp             EES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHHHHHH
T ss_pred             ecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHHHHHH
Confidence            456677899999888876656789999999998753   345544  34443221110        0 000001111111


Q ss_pred             ccccCC-CCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc
Q 030946           81 FGIFSG-TEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN  146 (168)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~  146 (168)
                      ..+... .+...++++.    -.....+++++|..|++.            ....++-.|..+|...
T Consensus       103 ~~~~~~~~~~~~~~~~~----l~~~~~p~l~HC~aGKDR------------TG~~~alll~~lGV~~  153 (164)
T PF13350_consen  103 REMLESYAEAYRKIFEL----LADAPGPVLFHCTAGKDR------------TGVVAALLLSLLGVPD  153 (164)
T ss_dssp             HHGGGSTHHHHHHHHHH----HH-TT--EEEE-SSSSSH------------HHHHHHHHHHHTT--H
T ss_pred             HHHHHhhhHHHHHHHHH----hccCCCcEEEECCCCCcc------------HHHHHHHHHHHcCCCH
Confidence            122211 1222233322    122236999999999973            6777788888889864

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=95.58  E-value=0.095  Score=45.16  Aligned_cols=45  Identities=18%  Similarity=0.371  Sum_probs=33.6

Q ss_pred             ceecHHHHHHHh--hcC--CeEEEecCChhhhhhcCCCCcEEechhhHH
Q 030946           20 RSVEAKEALRLQ--KEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLI   64 (168)
Q Consensus        20 ~~i~~~~l~~~l--~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~   64 (168)
                      -.|+.-|+.+.-  +.+  +..|||+|+.++|..||+-.|.|+.-.-..
T Consensus       307 Lpisv~el~~~~~~~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lml  355 (669)
T KOG3636|consen  307 LPISVIELTSHDEISSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLML  355 (669)
T ss_pred             cchhHHHhhcccccccCceEEEEEeccchhhcccccchhhhcccHHHHh
Confidence            346666665432  222  688999999999999999999998875443

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=95.48  E-value=0.063  Score=38.70  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=22.2

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEF   47 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~   47 (168)
                      ..++++++..+-+.+=..|||.|+..|.
T Consensus        13 ~qlt~~d~~~L~~~GiktVIdlR~~~E~   40 (135)
T TIGR01244        13 PQLTKADAAQAAQLGFKTVINNRPDREE   40 (135)
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCCC
Confidence            4688888888766666789999997764

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=95.12  E-value=0.11  Score=36.39  Aligned_cols=27  Identities=15%  Similarity=0.359  Sum_probs=17.6

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAE   46 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e   46 (168)
                      ..++++++.++-+.+-..||+.|+..|
T Consensus        13 ~Q~~~~d~~~la~~GfktVInlRpd~E   39 (110)
T PF04273_consen   13 GQPSPEDLAQLAAQGFKTVINLRPDGE   39 (110)
T ss_dssp             CS--HHHHHHHHHCT--EEEE-S-TTS
T ss_pred             CCCCHHHHHHHHHCCCcEEEECCCCCC
Confidence            368999999988887788999998755

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=94.98  E-value=0.0093  Score=49.19  Aligned_cols=50  Identities=12%  Similarity=0.084  Sum_probs=40.2

Q ss_pred             eecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHH
Q 030946           21 SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDI   72 (168)
Q Consensus        21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~   72 (168)
                      .=+++++.+.+.. ...++|+|....|+.+||||++|+|. .-+..|.+|..
T Consensus        15 i~~~~~~~~~l~~-~~~~~d~rg~i~~a~egIngtis~~~-~~~~~~~~~l~   64 (314)
T PRK00142         15 IEDPEAFRDEHLA-LCKSLGLKGRILVAEEGINGTVSGTI-EQTEAYMAWLK   64 (314)
T ss_pred             CCCHHHHHHHHHH-HHHHcCCeeEEEEcCCCceEEEEecH-HHHHHHHHHHh
Confidence            4567888888876 57789999999999999999999999 55556655544

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=90.50  E-value=0.59  Score=38.57  Aligned_cols=35  Identities=14%  Similarity=0.109  Sum_probs=30.1

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhhhhh---cCCC
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAEFKE---AHPP   53 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~---ghIp   53 (168)
                      ...+...++.+.+...+..|||+|+..+|..   |||+
T Consensus       135 ~tg~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~  172 (311)
T TIGR03167       135 MTGSGKTELLHALANAGAQVLDLEGLANHRGSSFGALG  172 (311)
T ss_pred             CCCcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCC
Confidence            3568888999999877889999999999987   7888

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity

Probab=83.87  E-value=1  Score=31.99  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=31.0

Q ss_pred             EEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc----CccceeEccccHHHH
Q 030946          108 IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----GYKNVYHLEGGLYKW  157 (168)
Q Consensus       108 iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~----G~~~v~~l~GG~~~w  157 (168)
                      |+|+|.+..|             ||..|...|+..    +-.++.+...|..+|
T Consensus         1 ILFvC~~N~c-------------RS~mAEai~~~~~~~~~~~~~~v~SAG~~~~   41 (138)
T PF01451_consen    1 ILFVCTGNIC-------------RSPMAEAILRHLLKQRLGDRFEVESAGTEAW   41 (138)
T ss_dssp             EEEEESSSSS-------------HHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred             CEEEeCCCcc-------------hHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence            7899999886             999998888887    556788888888766

Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....

>COG0062 Uncharacterized conserved protein [Function unknown]

Probab=82.46  E-value=6  Score=30.67  Aligned_cols=33  Identities=33%  Similarity=0.587  Sum_probs=26.6

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE
Q 030946          105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH  149 (168)
Q Consensus       105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~  149 (168)
                      ..+|+++|..|+         +|+  .+.-+|+.|...|++ |.+
T Consensus        49 ~~~v~vlcG~Gn---------NGG--DG~VaAR~L~~~G~~-V~v   81 (203)
T COG0062          49 ARRVLVLCGPGN---------NGG--DGLVAARHLKAAGYA-VTV   81 (203)
T ss_pred             CCEEEEEECCCC---------ccH--HHHHHHHHHHhCCCc-eEE
Confidence            678999999998         677  455699999999985 543

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=81.86  E-value=6.3  Score=27.72  Aligned_cols=31  Identities=32%  Similarity=0.542  Sum_probs=21.7

Q ss_pred             CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHH--HHHHHHHcCcc
Q 030946          102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI--AAYLLVLNGYK  145 (168)
Q Consensus       102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~--a~~~L~~~G~~  145 (168)
                      ...+++|+|+|..|..             |+..  +++.+...|++
T Consensus        75 ~~~~~~VlVHC~~G~~-------------RS~~v~~~yl~~~~~~~  107 (138)
T smart00195       75 EKKGGKVLVHCQAGVS-------------RSATLIIAYLMKYRNLS  107 (138)
T ss_pred             hcCCCeEEEECCCCCc-------------hHHHHHHHHHHHHhCCC
Confidence            4567899999999973             5543  45556666763

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=81.74  E-value=6.3  Score=27.53  Aligned_cols=14  Identities=36%  Similarity=0.771  Sum_probs=11.9

Q ss_pred             CCCCeEEEEeCCCC
Q 030946          103 DKDAKIIVACATGG  116 (168)
Q Consensus       103 ~~~~~iV~yc~~g~  116 (168)
                      ..+++|+|+|..|.
T Consensus        79 ~~~~~vlVHC~~G~   92 (139)
T cd00127          79 EKGGKVLVHCLAGV   92 (139)
T ss_pred             hcCCcEEEECCCCC
Confidence            35679999999998

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		3e-06

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 34/125 (27%)
Query: 39  LDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDXXXXXXXXXXXXXSGTEENPEFLQTGV 98
           LDVR   EF + H  GAINV                          SG  +N +FL+  V
Sbjct: 36  LDVRTPEEFSQGHACGAINVPYMN-------------------RGASGMSKNTDFLEQ-V 75
Query: 99  ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWF 158
            S   +   IIV C +GG              RS+ A   L+  G+  V  + GG   W 
Sbjct: 76  SSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWA 121
Query: 159 KEELP 163
           K  LP
Sbjct: 122 KNGLP 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1tq1_A	129	AT5G66040, senescence-associated family protein; C	5e-27
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	9e-22
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	2e-21
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	5e-21
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	6e-21
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	7e-21
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	2e-20
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	3e-20
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	2e-19
1vee_A	134	Proline-rich protein family; hypothetical protein,	2e-18
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	6e-17
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-16
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	5e-14
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	7e-08
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	3e-07
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	2e-16
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	2e-16
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	3e-16
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	3e-16
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	7e-16
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	3e-14
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	4e-14
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	4e-14
2jtq_A	85	Phage shock protein E; solution structure rhodanes	2e-13
3r2u_A	466	Metallo-beta-lactamase family protein; structural	5e-13
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	9e-12
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	6e-11
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	2e-10
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	6e-10
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	2e-09
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	3e-09
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	4e-09
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	6e-09
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	4e-08
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	1e-06
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	1e-06
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	1e-06
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	1e-05
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	1e-05
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	2e-05
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	1e-04
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	2e-04
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	8e-04

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score = 97.9 bits (244), Expect = 5e-27
 Identities = 41/148 (27%), Positives = 53/148 (35%), Gaps = 35/148 (23%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
             SV    A  L    +   LDVR   EF + H  GAINV                    
Sbjct: 17  PSSVSVTVAHDLLLAGH-RYLDVRTPEEFSQGHACGAINVPYMNRG-------------- 61

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                 SG  +N +FL+  V S   +   IIV C +GG              RS+ A   
Sbjct: 62  -----ASGMSKNTDFLEQ-VSSHFGQSDNIIVGCQSGG--------------RSIKATTD 101

Query: 139 LVLNGYKNVYHLEGGLYKWFKEELPEVS 166
           L+  G+  V  + GG   W K  LP  +
Sbjct: 102 LLHAGFTGVKDIVGGYSAWAKNGLPTKA 129

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 84.4 bits (209), Expect = 9e-22
 Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 34/143 (23%)

Query: 23  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
           + K  +  + + N V++DVR  +E+   H P +INV        +               
Sbjct: 29  DMKRIVG-KHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDP----------- 76

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
                    EF +     + D   ++I  CA+G               R   A  +   +
Sbjct: 77  --------LEFEKQIGIPKPDSAKELIFYCASGK--------------RGGEAQKVASSH 114

Query: 143 GYKNVYHLEGGLYKWFKEELPEV 165
           GY N     G +  W      ++
Sbjct: 115 GYSNTSLYPGSMNDWVSHGGDKL 137

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 82.7 bits (205), Expect = 2e-21
 Identities = 29/149 (19%), Positives = 48/149 (32%), Gaps = 46/149 (30%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           Q   +   +A +  +E   V++D+R    F   H   A ++    L              
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL-------------- 48

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                          F++       D D  ++V C  G                S  AA 
Sbjct: 49  -------------GAFMR-----DNDFDTPVMVMCYHGN--------------SSKGAAQ 76

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELPEVS 166
            L+  GY  VY ++GG   W ++   EV+
Sbjct: 77  YLLQQGYDVVYSIDGGFEAWQRQFPAEVA 105

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 81.5 bits (202), Expect = 5e-21
 Identities = 32/146 (21%), Positives = 46/146 (31%), Gaps = 46/146 (31%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
           +  K  L    E  F ILDVR  + + + H  GA+ + I  L+                 
Sbjct: 1   MVLKSRLE-WGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR--------------- 44

Query: 82  GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141
                             S L+K   I V  A                 ++  A  LL  
Sbjct: 45  ----------------ASSSLEKSRDIYVYGAGDE--------------QTSQAVNLLRS 74

Query: 142 NGYKNVYHLEGGLYKWFKEELPEVSE 167
            G+++V  L+GGL  W     P   E
Sbjct: 75  AGFEHVSELKGGLAAWKAIGGPTELE 100

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 82.5 bits (204), Expect = 6e-21
 Identities = 29/145 (20%), Positives = 45/145 (31%), Gaps = 45/145 (31%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
           +      ++     E  F ILDVR  + + + H  GA+ + I  L+              
Sbjct: 1   MSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR------------ 48

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                                S L+K   I V  A                 ++  A  L
Sbjct: 49  -------------------ASSSLEKSRDIYVYGAGDE--------------QTSQAVNL 75

Query: 139 LVLNGYKNVYHLEGGLYKWFKEELP 163
           L   G+++V  L+GGL  W     P
Sbjct: 76  LRSAGFEHVSELKGGLAAWKAIGGP 100

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 81.2 bits (201), Expect = 7e-21
 Identities = 31/146 (21%), Positives = 51/146 (34%), Gaps = 45/146 (30%)

Query: 23  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
           +   +L     N+F+++DVR   E++E H P A  + +          D  + A      
Sbjct: 4   DYAISLEEVNFNDFIVVDVRELDEYEELHLPNATLISVN---------DQEKLAD----- 49

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
                                KD K+++ C  G               R+L AA  +   
Sbjct: 50  ----------------FLSQHKDKKVLLHCRAGR--------------RALDAAKSMHEL 79

Query: 143 GYKNVYHLEGGLYKWFKEELPEVSEE 168
           GY   Y LEG +Y + K     V ++
Sbjct: 80  GYTPYY-LEGNVYDFEKYGFRMVYDD 104

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 81.3 bits (200), Expect = 2e-20
 Identities = 26/144 (18%), Positives = 42/144 (29%), Gaps = 26/144 (18%)

Query: 19  VRSVEAKEALR-LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
              +   +A   L      V++DVR EAE++    P   ++    +  EW   D      
Sbjct: 4   AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDN 63

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
           F             E            +  +I  C +G               RS+ AA 
Sbjct: 64  FL-----------AELRDRIPADADQHERPVIFLCRSGN--------------RSIGAAE 98

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEE 161
           +    G    Y++  G       E
Sbjct: 99  VATEAGITPAYNVLDGFEGHLDAE 122

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 80.4 bits (199), Expect = 3e-20
 Identities = 31/149 (20%), Positives = 51/149 (34%), Gaps = 41/149 (27%)

Query: 18  QVRSVEAKEALRLQKEN--NFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIAR 74
            + ++   +A+ L K    + VI+D+R   E  ++   PG+ +    R + E+       
Sbjct: 20  SIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFS--CTRGMLEFWID---- 73

Query: 75  RAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 134
                         ++P            +D K +  CA G               RS +
Sbjct: 74  -------------PQSPYAK-----PIFQEDKKFVFYCAGGL--------------RSAL 101

Query: 135 AAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
           AA      G K V H+EGG   W     P
Sbjct: 102 AAKTAQDMGLKPVAHIEGGFGAWRDAGGP 130

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 78.5 bits (194), Expect = 2e-19
 Identities = 34/154 (22%), Positives = 57/154 (37%), Gaps = 46/154 (29%)

Query: 18  QVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAIN-VQIYR-LIKEWTAWDIAR 74
            +  +  K+A +L +EN +  ++DVR   E K    P   N   + R  ++   A     
Sbjct: 21  DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLA----- 75

Query: 75  RAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLI 134
                                   +S LD +  ++V C T                R+ +
Sbjct: 76  ------------------------KSGLDPEKPVVVFCKTAA--------------RAAL 97

Query: 135 AAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
           A   L   G+K +Y+ EGG+ KW +E LP +   
Sbjct: 98  AGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 75.8 bits (186), Expect = 2e-18
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 37/151 (24%)

Query: 18  QVRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
              S  AK A  +L  ++N  +LD+R  A+F++   P    +    +   +   D     
Sbjct: 3   SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGED----- 57

Query: 77  AFAFFGIFSGTEENPEFLQTGVES-QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 135
                         P FL+      +  ++  + +     G               S + 
Sbjct: 58  -------------KPGFLKKLSLKFKDPENTTLYILDKFDG--------------NSELV 90

Query: 136 AYLLVLNGYKNVYHLEGGL---YKWFKEELP 163
           A L+ LNG+K+ Y ++ G      W    LP
Sbjct: 91  AELVALNGFKSAYAIKDGAEGPRGWLNSSLP 121

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 72.1 bits (177), Expect = 6e-17
 Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 45/146 (30%)

Query: 23  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
           +    ++   E   +++DVR    +KE H P AI++   ++ ++                
Sbjct: 22  DLSIDIKKGYEG-IIVVDVRDAEAYKECHIPTAISIPGNKINED---------------- 64

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
                             +L K+  II  C                 + +  AA      
Sbjct: 65  ---------------TTKRLSKEKVIITYCWGPAC------------NGATKAAAKFAQL 97

Query: 143 GYKNVYHLEGGLYKWFKEELPEVSEE 168
           G+  V  L GG+  W KE        
Sbjct: 98  GF-RVKELIGGIEYWRKENGEVEGTL 122

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 75.1 bits (184), Expect = 1e-16
 Identities = 30/147 (20%), Positives = 43/147 (29%), Gaps = 45/147 (30%)

Query: 18  QVRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
           Q+      +    L       +LDVR E  F +AHP  A N+ + RL +      +    
Sbjct: 5   QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRL-ELEIHARVP--- 60

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                                      +D  I V     G               + +AA
Sbjct: 61  --------------------------RRDTPITVYDDGEG--------------LAPVAA 80

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKEELP 163
             L   GY +V  L+GGL  W      
Sbjct: 81  QRLHDLGYSDVALLDGGLSGWRNAGGE 107

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 67.8 bits (165), Expect = 5e-14
 Identities = 22/150 (14%), Positives = 40/150 (26%), Gaps = 46/150 (30%)

Query: 14  FYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 73
               +  +++         E    +LD    A + + H PGA  V   +L          
Sbjct: 371 PRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQL---------- 420

Query: 74  RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 133
                             + L      +L    + ++ C +                 + 
Sbjct: 421 -----------------KQAL-----ERLGTAERYVLTCGSSL--------------LAR 444

Query: 134 IAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
            A   +     K V+ L+GG   W    LP
Sbjct: 445 FAVAEVQALSGKPVFLLDGGTSAWVAAGLP 474

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 49.7 bits (118), Expect = 7e-08
 Identities = 33/147 (22%), Positives = 42/147 (28%), Gaps = 46/147 (31%)

Query: 13  VFYLLQVRSVEAKE-ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD 71
           V       S+ A+E    L      VILD R   E++    PG I+V    L        
Sbjct: 123 VEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL-------- 174

Query: 72  IARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 131
              R A                     E   D   ++IV CA                 R
Sbjct: 175 -VLRVA---------------------ELAPDPRTRVIVNCAGRT--------------R 198

Query: 132 SLIAAYLLVLNGYKNVYH-LEGGLYKW 157
           S+I    L+  G  N    L  G   W
Sbjct: 199 SIIGTQSLLNAGIPNPVAALRNGTIGW 225

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 48.2 bits (114), Expect = 3e-07
 Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 45/140 (32%)

Query: 21  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAF 80
            +      + + +    +LDVR   E++  H PG+ +    +L++E              
Sbjct: 268 DLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVAS-------- 319

Query: 81  FGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 140
                                  + A++++    G               R+ ++A  L 
Sbjct: 320 ----------------------VRGARLVLVDDDG--------------VRANMSASWLA 343

Query: 141 LNGYKNVYHLEGGLYKWFKE 160
             G++    L+G     F E
Sbjct: 344 QMGWQV-AVLDGLSEADFSE 362

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 69.6 bits (171), Expect = 2e-16
 Identities = 34/149 (22%), Positives = 48/149 (32%), Gaps = 49/149 (32%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
            RS+ A +    +    + +LDVR   E        +IN+ I  L               
Sbjct: 3   YRSINAADLY--ENIKAYTVLDVREPFELIFGSIANSINIPISEL--------------- 45

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                        E  +      L++D K  V CA G               RS  A   
Sbjct: 46  ------------REKWK-----ILERDKKYAVICAHGN--------------RSAAAVEF 74

Query: 139 LVLNGYKNVYHLEGGLYKWFKEELPEVSE 167
           L   G  N+  +EGG+  W +E  P V E
Sbjct: 75  LSQLGL-NIVDVEGGIQSWIEEGYPVVLE 102

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 74.3 bits (182), Expect = 3e-16
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 46/146 (31%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
              +V   E      +    +LDVR   E+   H P A ++ + +L              
Sbjct: 372 SYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAAHI---------- 421

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                                   + +D  + V C TGG              RS IAA 
Sbjct: 422 ----------------------HDVPRDGSVCVYCRTGG--------------RSAIAAS 445

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELP 163
           LL  +G  +V ++ GG   W  +  P
Sbjct: 446 LLRAHGVGDVRNMVGGYEAWRGKGFP 471

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 70.4 bits (172), Expect = 3e-16
 Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 49/154 (31%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
            +  + + + L L +  N  I+DVR E    + H  G+++                    
Sbjct: 26  SISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSF-------------- 71

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                     ++    +Q      +     ++   A                 R    A 
Sbjct: 72  ---------DDKISHLVQ-----NVKDKDTLVFHSALSQ-------------VRGPTCAR 104

Query: 138 LLVLN--------GYKNVYHLEGGLYKWFKEELP 163
            LV          G KN+  LE G   W     P
Sbjct: 105 RLVNYLDEKKEDTGIKNIMILERGFNGWEASGKP 138

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 68.0 bits (167), Expect = 7e-16
 Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 48/146 (32%)

Query: 19  VRSVEAKE-ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           + S+   E   ++   N   I+DVR + E      PGA  + +           I     
Sbjct: 1   MESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN---------SIPDNL- 50

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                                 +  + +    + C  GG              RS     
Sbjct: 51  ----------------------NYFNDNETYYIICKAGG--------------RSAQVVQ 74

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELP 163
            L  NG  N  ++EGG+ ++  E L 
Sbjct: 75  YLEQNGV-NAVNVEGGMDEFGDEGLE 99

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 64.4 bits (157), Expect = 3e-14
 Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 37/144 (25%)

Query: 23  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
           + K    L      ++LDVRP+ E      P A+++ +           + RR A +   
Sbjct: 7   DYKR--LLDSGAFHLLLDVRPQVEVDICRLPHALHIPL---------KHLERRDAESL-- 53

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
                       +    +Q      I V C  G                S  A  +L   
Sbjct: 54  ----KLLKEAIWEEKQGTQEGAAVPIYVICKLGN--------------DSQKAVKILQSL 95

Query: 143 GYK------NVYHLEGGLYKWFKE 160
                     V  + GGL  W  +
Sbjct: 96  SAAQELDPLTVRDVVGGLMAWAAK 119

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 64.3 bits (157), Expect = 4e-14
 Identities = 31/148 (20%), Positives = 48/148 (32%), Gaps = 47/148 (31%)

Query: 17  LQVRSVEAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARR 75
           L +        ++      +V+LDVR   A+ K+    GAI +            D+A R
Sbjct: 15  LYIDHHTVLADMQ-NATGKYVVLDVRNAPAQVKKDQIKGAIAMPAK---------DLATR 64

Query: 76  AAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 135
                                    +LD     +V   TGGT            +    A
Sbjct: 65  IG-----------------------ELDPAKTYVVYDWTGGT------------TLGKTA 89

Query: 136 AYLLVLNGYKNVYHLEGGLYKWFKEELP 163
             +L+  G++  Y L G L  W   +LP
Sbjct: 90  LLVLLSAGFE-AYELAGALEGWKGMQLP 116

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 63.4 bits (155), Expect = 4e-14
 Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 49/139 (35%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
           +R V  +E   L +E   +++DVRP        P  A  V + ++               
Sbjct: 1   MRKVRPEELPALLEEG-VLVVDVRPADRRSTPLPFAAEWVPLEKI--------------- 44

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                        +         L +   +++ C  G                S +AA  
Sbjct: 45  ------------QKGE-----HGLPRR-PLLLVCEKGL--------------LSQVAALY 72

Query: 139 LVLNGYKNVYHLEGGLYKW 157
           L   GY     LEGGL   
Sbjct: 73  LEAEGY-EAMSLEGGLQAL 90

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 61.1 bits (149), Expect = 2e-13
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 45/121 (37%)

Query: 37  VILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT 96
             +DVR   ++++ H  GAIN+ +          ++  R A                   
Sbjct: 3   HWIDVRVPEQYQQEHVQGAINIPLK---------EVKERIA------------------- 34

Query: 97  GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYK 156
              +  DK+  + V C  G               +S  A  +L   GY +V +  GGL  
Sbjct: 35  --TAVPDKNDTVKVYCNAGR--------------QSGQAKEILSEMGYTHVENA-GGLKD 77

Query: 157 W 157
            
Sbjct: 78  I 78

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 64.7 bits (157), Expect = 5e-13
 Identities = 25/126 (19%), Positives = 39/126 (30%), Gaps = 46/126 (36%)

Query: 32  KENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP 91
             N   ILDVR + E+   H   A++V   +L++                          
Sbjct: 384 TGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLETD------------------------ 419

Query: 92  EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLE 151
                      +K+  I V C +G               RS IA  +L   GY N+ ++ 
Sbjct: 420 --------LPFNKNDVIYVHCQSGI--------------RSSIAIGILEHKGYHNIINVN 457

Query: 152 GGLYKW 157
            G    
Sbjct: 458 EGYKDI 463

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 58.2 bits (140), Expect = 9e-12
 Identities = 32/148 (21%), Positives = 52/148 (35%), Gaps = 21/148 (14%)

Query: 21  SVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIY----RLIKEWTAWDIARRA 76
           ++   +  +  K +  + +DVR E E++E H   AIN+ ++                +  
Sbjct: 3   AMSVIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHE 62

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
           A      F       + +             I++ CA GG              RS    
Sbjct: 63  AIQK--GFDYVSYKLKDIYLQAAELALNYDNIVIYCARGG-------------MRSGSIV 107

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKEELPE 164
            LL   G   VY LEGG YK ++  + E
Sbjct: 108 NLLSSLGVN-VYQLEGG-YKAYRNFVLE 133

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 58.8 bits (143), Expect = 6e-11
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 49/147 (33%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
            V +V+  E +    EN   ++DVR   E K+    G+IN+ +  L           R  
Sbjct: 487 FVDTVQWHE-IDRIVENGGYLIDVREPNELKQGMIKGSINIPLDEL-----------RDR 534

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                                  ++  D  I + C  G               R  +AA 
Sbjct: 535 L---------------------EEVPVDKDIYITCQLG--------------MRGYVAAR 559

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELPE 164
           +L+  GY  V +++GG +K +   LPE
Sbjct: 560 MLMEKGY-KVKNVDGG-FKLYGTVLPE 584

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 55.4 bits (133), Expect = 2e-10
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 28/130 (21%)

Query: 31  QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90
                FVI+D R   E++  H  GA+N+ +   +++                        
Sbjct: 40  NLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVED------------------------ 75

Query: 91  PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150
              L+  +     K   ++  C       P       ++ R       L    Y  +Y L
Sbjct: 76  -FLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKL---HYPELYVL 131

Query: 151 EGGLYKWFKE 160
           +GG  ++F +
Sbjct: 132 KGGYKEFFMK 141

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 53.9 bits (129), Expect = 6e-10
 Identities = 17/148 (11%), Positives = 35/148 (23%), Gaps = 39/148 (26%)

Query: 18  QVRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 73
               ++ +E + L           ++D R   +        +IN+      +E       
Sbjct: 3   NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEE------- 54

Query: 74  RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 133
                              + +       +K    +  CA               +  + 
Sbjct: 55  ------------------MYEKLAKTLFEEKKELAVFHCAQSLV--------RAPKGANR 88

Query: 134 IAAYLLVLN-GYKNVYHLEGGLYKWFKE 160
            A     L      VY L GG   ++  
Sbjct: 89  FALAQKKLGYVLPAVYVLRGGWEAFYHM 116

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 28/137 (20%), Positives = 44/137 (32%), Gaps = 28/137 (20%)

Query: 31  QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90
              + FVI+D R   E++  H   A+N+ + R                          E+
Sbjct: 41  NIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA------------------------ES 76

Query: 91  PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150
                      LDK   +I          P       ++ R++     L    Y  +Y L
Sbjct: 77  FLLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSL---YYPEMYIL 133

Query: 151 EGGLYKWFKEELPEVSE 167
           +GG YK F  + P   E
Sbjct: 134 KGG-YKEFFPQHPNFCE 149

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 54.1 bits (131), Expect = 3e-09
 Identities = 27/139 (19%), Positives = 44/139 (31%), Gaps = 49/139 (35%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
              +   +   L +  + ++LDVR   E +     GA+N+ +  L           R   
Sbjct: 472 ATPIHFDQIDNLSE--DQLLLDVRNPGELQNGGLEGAVNIPVDEL-----------RDRM 518

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                                 +L KD +II+    G               R  +A   
Sbjct: 519 ---------------------HELPKDKEIIIFSQVG--------------LRGNVAYRQ 543

Query: 139 LVLNGYKNVYHLEGGLYKW 157
           LV NGY+   +L GG   +
Sbjct: 544 LVNNGYR-ARNLIGGYRTY 561

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 28/147 (19%), Positives = 42/147 (28%), Gaps = 48/147 (32%)

Query: 31  QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90
              + FVI+D R   E++  H   A+N+ + R                          E+
Sbjct: 61  NIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDA------------------------ES 96

Query: 91  PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL-----VLN--- 142
                      LDK   +I  C                  R       +      +N   
Sbjct: 97  FLLKSPIAPCSLDKRVILIFHCEFSSE-------------RGPRMCRFIRERDRAVNDYP 143

Query: 143 --GYKNVYHLEGGLYKWFKEELPEVSE 167
              Y  +Y L+GG YK F  + P   E
Sbjct: 144 SLYYPEMYILKGG-YKEFFPQHPNFCE 169

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 51.7 bits (123), Expect = 6e-09
 Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 34/149 (22%)

Query: 25  KEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF 84
           +E         F ++DVR   ++   H     +    RL ++                  
Sbjct: 43  QEGHTTTLREPFQVVDVRGS-DYMGGHIKDGWHYAYSRLKQDP----------------- 84

Query: 85  SGTEENPEFLQTGVESQLDKDAK--IIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
              E   E     +E Q D      +I  C              G  +  L+   L    
Sbjct: 85  ---EYLRELKHRLLEKQADGRGALNVIFHCMLSQQ--------RGPSAAMLLLRSLDTAE 133

Query: 143 -GYKNVYHLEGGLYKWFKE--ELPEVSEE 168
                ++ L GG  +W     +   V+  
Sbjct: 134 LSRCRLWVLRGGFSRWQSVYGDDESVTAG 162

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 26/139 (18%), Positives = 40/139 (28%), Gaps = 38/139 (27%)

Query: 34  NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 93
             F ++D R   E+   H  GA+N+     +                         N   
Sbjct: 77  EKFYVIDCRYPYEYLGGHIQGALNLYSQEEL------------------------FNFFL 112

Query: 94  LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN-----GYKNVY 148
            +  V     K   I+  C              G +    +      LN      Y  +Y
Sbjct: 113 KKPIVPLDTQKRIIIVFHCEFSSE--------RGPRMCRCLREEDRSLNQYPALYYPELY 164

Query: 149 HLEGGLYKWFKEELPEVSE 167
            L+GG Y+ F  E  E+ E
Sbjct: 165 ILKGG-YRDFFPEYMELCE 182

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens} Length = 142

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 23/141 (16%), Positives = 43/141 (30%), Gaps = 18/141 (12%)

Query: 24  AKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 83
            K +         VI+D RP  E+ ++H  GA+++     I         RR       +
Sbjct: 13  TKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKI-------SRRRLQQGKITV 65

Query: 84  FSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 143
                +     +     +     +IIV             +   Q    ++ +   +   
Sbjct: 66  ----LDLISCREGKDSFKRIFSKEIIVYD---ENTNEPSRVMPSQPLHIVLES---LKRE 115

Query: 144 YKNVYHLEGGLYKWFKEELPE 164
            K    L+GG    FK+    
Sbjct: 116 GKEPLVLKGG-LSSFKQNHEN 135

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A Length = 153

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 31  QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90
                 +++D RP  E+  +H   AIN+   +L+K                         
Sbjct: 17  SGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRL---------------QQDKVLI 61

Query: 91  PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHL 150
            E +Q   + ++D D    V      +     +L        L+         + +V+ L
Sbjct: 62  TELIQHSAKHKVDIDCSQKVVVYDQSSQD-VASLSSDCFLTVLLGKL---EKSFNSVHLL 117

Query: 151 EGGLYKWFKEELPEVSEE 168
            GG +  F    P + E 
Sbjct: 118 AGG-FAEFSRCFPGLCEG 134

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens} Length = 158

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 24/135 (17%)

Query: 33  ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF---AFFGIFSGTEE 89
               VI+D RP  E+ ++H  GA+++     I         RR          + S  E 
Sbjct: 32  SQGPVIIDCRPFMEYNKSHIQGAVHINCADKI-------SRRRLQQGKITVLDLISCREG 84

Query: 90  NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH 149
              F       +     +IIV                  Q   ++   L      K    
Sbjct: 85  KDSF-------KRIFSKEIIVYDENTNEPSRVMP----SQPLHIVLESL--KREGKEPLV 131

Query: 150 LEGGLYKWFKEELPE 164
           L+GG    FK+    
Sbjct: 132 LKGG-LSSFKQNHEN 145

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp} Length = 265

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 52/145 (35%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
           +  +E  +  ++ N ++LD R + E++      AIN  I                 F  F
Sbjct: 124 LSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDI---------------ENFREF 168

Query: 82  GIFSGTEENPEFLQTGVESQLD--KDAKIIVACATGGTMKPSQNLPEGQQSRSLI----A 135
                    P++    V+  L   KD KI + C TGG                 I     
Sbjct: 169 ---------PDY----VQRNLIDKKDKKIAMFC-TGG-----------------IRCEKT 197

Query: 136 AYLLVLNGYKNVYHLEGGLYKWFKE 160
              +   G+++VY L  G+  + + 
Sbjct: 198 TAYMKELGFEHVYQLHDGILNYLES 222

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1 Length = 154

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 34  NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 93
              +++D RP+  ++ +H   AINV I  ++            A     +F+  E+   F
Sbjct: 32  ERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRA-----LFTRGEDRDRF 86

Query: 94  LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG 153
            +        +     V      +   ++N         L+       +     ++LEGG
Sbjct: 87  TR--------RCGTDTVVLYDESSSDWNENTGGESLLGLLLKKL---KDEGCRAFYLEGG 135

Query: 154 LYKWFKEELPE 164
            +  F+ E   
Sbjct: 136 -FSKFQAEFSL 145

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 28/156 (17%), Positives = 42/156 (26%), Gaps = 44/156 (28%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW--DIARRAAFA 79
           +E  +          +++D+   A + E H PGA  V   R              R    
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 80  ----FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA 135
                 G                      +A  +V    GG                  A
Sbjct: 71  SLFGELGH-------------------RPEAVYVVYDDEGGGW----------------A 95

Query: 136 AY---LLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
                LL + G +  ++L GGL  W  E+ P   E 
Sbjct: 96  GRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSREL 131

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 24/134 (17%)

Query: 31  QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90
            K  + +I+D R   +++++    +++V    +    TA  I               E +
Sbjct: 28  DKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWI---------------EAH 72

Query: 91  PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN---- 146
                     +      +++          +++L  G   RSL  A L            
Sbjct: 73  LPDDSKDTWKKRGNVEYVVLLDWFSS----AKDLQIGTTLRSLKDA-LFKWESKTVLRNE 127

Query: 147 VYHLEGGLYKWFKE 160
              LEGG   W   
Sbjct: 128 PLVLEGGYENWLLC 141

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4 Length = 157

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 24/134 (17%)

Query: 31  QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN 90
            K  + +I+D R   +++++    +++V    +    TA  I                  
Sbjct: 33  DKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHL-------------- 78

Query: 91  PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH- 149
           P+  +   + + + +  +++          +++L  G   RSL  A L        + + 
Sbjct: 79  PDDSKDTWKKRGNVEY-VVLLDWFS----SAKDLQIGTTLRSLKDA-LFKWESKTVLRNE 132

Query: 150 ---LEGGLYKWFKE 160
              LEGG   W   
Sbjct: 133 PLVLEGGYENWLLC 146

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 35/138 (25%)

Query: 35  NFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF 93
             V ++V    + +   H  GAI +     +++    D      F+   + S        
Sbjct: 21  KVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFS--KLLS-------- 70

Query: 94  LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY---LLVLNGYKNVYHL 150
            + G+      +  +I+                        AAY      L G++ V  L
Sbjct: 71  -ERGI----ANEDTVILYGGNNNWF----------------AAYAYWYFKLYGHEKVKLL 109

Query: 151 EGGLYKWFKEELPEVSEE 168
           +GG  KW  +  P  S+ 
Sbjct: 110 DGGRKKWELDGRPLSSDP 127

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.95
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.94
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.94
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.94
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.93
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.93
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.93
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.93
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.93
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.93
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.92
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.92
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.91
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.9
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.9
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.9
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.89
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.89
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.89
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.88
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.88
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.88
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.88
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.88
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.87
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.87
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.87
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.87
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.87
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.87
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.87
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.86
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.86
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.86
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.86
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.86
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.85
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.85
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.85
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.84
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.84
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.84
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.84
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.83
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.83
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.83
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.83
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.82
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.82
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.81
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.8
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.8
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.78
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.78
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.77
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.77
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.71
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.7
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.7
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.69
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.69
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.35
2f46_A	156	Hypothetical protein; structural genomics, joint c	97.66
1v8c_A	168	MOAD related protein; riken structural genomics/pr	91.75
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	90.11
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	88.38
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	88.06
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	82.86
1xri_A	151	AT1G05000; structural genomics, protein structure	82.41

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.95  E-value=3e-28  Score=168.42  Aligned_cols=101  Identities=27%  Similarity=0.340  Sum_probs=89.0

Q ss_pred             cceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           19 VRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      ++.||++|+.+.+.++ +.+|||||++.||..||||||+|+|+..+..                                
T Consensus         1 ~k~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------   48 (103)
T 3iwh_A            1 MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPD--------------------------------   48 (103)
T ss_dssp             CCEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGG--------------------------------
T ss_pred             CCCcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCcccchhh--------------------------------
Confidence            3679999999988654 6899999999999999999999999987643                                


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      ....++++++||+||.+|.              ||..++..|++.||+++ .|.||+.+|.++|+|+++
T Consensus        49 ~~~~l~~~~~ivv~C~~G~--------------rS~~aa~~L~~~G~~~~-~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           49 NLNSFNKNEIYYIVCAGGV--------------RSAKVVEYLEANGIDAV-NVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             CGGGCCTTSEEEEECSSSS--------------HHHHHHHHHHTTTCEEE-EETTHHHHHCSSSCBCCC
T ss_pred             hhhhhcCCCeEEEECCCCH--------------HHHHHHHHHHHcCCCEE-EecChHHHHHHCCCccee
Confidence            2245789999999999997              99999999999999755 689999999999999985

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.95  E-value=9.6e-28  Score=164.41  Aligned_cols=98  Identities=26%  Similarity=0.357  Sum_probs=88.1

Q ss_pred             ceecHHHHHHHhh-cCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           20 RSVEAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        20 ~~i~~~~l~~~l~-~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      +.|+++++.++++ .++.+|||||++.||..||||||+|+|+..+..                                .
T Consensus         2 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~--------------------------------~   49 (100)
T 3foj_A            2 ESITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMNSIPD--------------------------------N   49 (100)
T ss_dssp             CEECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGGGGGG--------------------------------C
T ss_pred             CccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHH--------------------------------H
Confidence            5799999999994 458999999999999999999999999987643                                2


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  164 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~  164 (168)
                      ...++++++||+||.+|.              ||..+++.|+..|| +|++|.||+.+|.++|+|+
T Consensus        50 ~~~l~~~~~ivvyC~~g~--------------rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           50 LNYFNDNETYYIICKAGG--------------RSAQVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             GGGSCTTSEEEEECSSSH--------------HHHHHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHhCCCCCcEEEEcCCCc--------------hHHHHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            244688999999999997              99999999999999 8999999999999999986

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.94  E-value=4.2e-27  Score=163.25  Aligned_cols=103  Identities=26%  Similarity=0.421  Sum_probs=91.6

Q ss_pred             ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      .+..|+++++.+++++++.+|||||++.||..||||||+|+|+..+...                               
T Consensus         3 ~~~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~-------------------------------   51 (108)
T 1gmx_A            3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF-------------------------------   51 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHH-------------------------------
T ss_pred             cccccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHHHHHHH-------------------------------
Confidence            4678999999999987789999999999999999999999999765321                               


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                       ...++++++||+||.+|.              ||..+++.|+..||+||++|.||+.+|.++ +|++.+
T Consensus        52 -~~~l~~~~~ivvyc~~g~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~~  105 (108)
T 1gmx_A           52 -MRDNDFDTPVMVMCYHGN--------------SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVA  105 (108)
T ss_dssp             -HHHSCTTSCEEEECSSSS--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEE
T ss_pred             -HHhcCCCCCEEEEcCCCc--------------hHHHHHHHHHHcCCceEEEecCCHHHHHHh-CCcccc
Confidence             123678899999999997              999999999999999999999999999999 998764

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.94  E-value=8.6e-27  Score=162.00  Aligned_cols=100  Identities=34%  Similarity=0.501  Sum_probs=90.5

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      +..|+++++.+++++  .+|||||++.||..||||||+|+|+..+...                                
T Consensus         3 ~~~is~~el~~~l~~--~~iiDvR~~~e~~~ghIpgA~~ip~~~l~~~--------------------------------   48 (108)
T 3gk5_A            3 YRSINAADLYENIKA--YTVLDVREPFELIFGSIANSINIPISELREK--------------------------------   48 (108)
T ss_dssp             CCEECHHHHHHTTTT--CEEEECSCHHHHTTCBCTTCEECCHHHHHHH--------------------------------
T ss_pred             ccEeCHHHHHHHHcC--CEEEECCCHHHHhcCcCCCCEEcCHHHHHHH--------------------------------
Confidence            678999999999976  9999999999999999999999999876432                                


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ...++++++||+||.+|.              ||..+++.|++.|| +|++|.||+.+|.++|+|++++
T Consensus        49 ~~~l~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~  102 (108)
T 3gk5_A           49 WKILERDKKYAVICAHGN--------------RSAAAVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLE  102 (108)
T ss_dssp             GGGSCTTSCEEEECSSSH--------------HHHHHHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC
T ss_pred             HHhCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCC
Confidence            234688999999999987              99999999999999 9999999999999999999875

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.94  E-value=3.1e-26  Score=165.63  Aligned_cols=108  Identities=27%  Similarity=0.471  Sum_probs=95.1

Q ss_pred             hcccceecHHHHHHHhh-cCCeEEEecCChhhhhh-cC--CCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCch
Q 030946           16 LLQVRSVEAKEALRLQK-ENNFVILDVRPEAEFKE-AH--PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP   91 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~-~~~~~liDvR~~~e~~~-gh--IpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (168)
                      ...+..|+++++.++++ .++.+|||||++.||.. ||  ||||+|+|+..+....                        
T Consensus        19 ~~~~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~~l~~~~------------------------   74 (137)
T 1qxn_A           19 KADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLL------------------------   74 (137)
T ss_dssp             HHSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHHH------------------------
T ss_pred             hccCcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchHHhhhHH------------------------
Confidence            45678999999999998 66799999999999999 99  9999999998764210                        


Q ss_pred             HHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           92 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        92 ~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                            ....++++++||+||.+|.              ||..+++.|+..||+||++|.||+.+|.++|+|++.+
T Consensus        75 ------~~~~l~~~~~ivvyC~~G~--------------rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  130 (137)
T 1qxn_A           75 ------AKSGLDPEKPVVVFCKTAA--------------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             ------HHHCCCTTSCEEEECCSSS--------------CHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             ------hhccCCCCCeEEEEcCCCc--------------HHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccc
Confidence                  1234788999999999998              9999999999999999999999999999999998864

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.93  E-value=1.9e-26  Score=164.89  Aligned_cols=116  Identities=35%  Similarity=0.511  Sum_probs=95.1

Q ss_pred             hcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           16 LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      ......|+++++.++++. +.+|||||++.||..||||||+|+|+..+..                   .+.....++++
T Consensus        14 ~~~~~~is~~e~~~~l~~-~~~lIDvR~~~e~~~ghIpgAinip~~~~~~-------------------~~~~~~~~~~~   73 (129)
T 1tq1_A           14 SRVPSSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGA-------------------SGMSKNTDFLE   73 (129)
T ss_dssp             SCCCEEEEHHHHHHHHHH-TCCEEEESCHHHHHHCCBTTBEECCSCCCST-------------------TTCCCTTTHHH
T ss_pred             cCCCcccCHHHHHHHhcC-CCEEEECCCHHHHhcCCCCCcEECcHhhccc-------------------ccccCCHHHHH
Confidence            456788999999999874 7899999999999999999999999854321                   01112234444


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      . ....++++++||+||.+|.              ||..+++.|.+.||+||++|.||+.+|.++|+|+++
T Consensus        74 ~-~~~~l~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  129 (129)
T 1tq1_A           74 Q-VSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  129 (129)
T ss_dssp             H-HTTTCCTTSSEEEEESSCS--------------HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             H-HHhhCCCCCeEEEECCCCc--------------HHHHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCCC
Confidence            3 3345788999999999997              999999999999999999999999999999999863

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.93  E-value=4.8e-26  Score=164.19  Aligned_cols=114  Identities=26%  Similarity=0.348  Sum_probs=94.2

Q ss_pred             hcccceecHHHHHHHhh--cCCeEEEecCChhhhhh-cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchH
Q 030946           16 LLQVRSVEAKEALRLQK--ENNFVILDVRPEAEFKE-AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE   92 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~--~~~~~liDvR~~~e~~~-ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (168)
                      ...+..|+++++.++++  .++.+|||||++.||.. ||||||+|+|+..+.......                   .+.
T Consensus        18 ~~~~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~~l~~~~~~~-------------------~~~   78 (139)
T 2hhg_A           18 NSSIETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWIDPQ-------------------SPY   78 (139)
T ss_dssp             HTTSEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGGGHHHHHCTT-------------------STT
T ss_pred             HHhcCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChHHHHHhcCcc-------------------chh
Confidence            35678999999999998  56899999999999998 999999999998764321100                   000


Q ss_pred             HHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           93 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                           ....++++++||+||.+|.              ||..+++.|+..||+||++|+||+.+|.++|+|++.+
T Consensus        79 -----~~~~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  134 (139)
T 2hhg_A           79 -----AKPIFQEDKKFVFYCAGGL--------------RSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAW  134 (139)
T ss_dssp             -----CCGGGGSSSEEEEECSSSH--------------HHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC--
T ss_pred             -----hhccCCCCCeEEEECCCCh--------------HHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecC
Confidence                 1124578899999999997              9999999999999999999999999999999999865

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.7e-26  Score=164.99  Aligned_cols=129  Identities=22%  Similarity=0.323  Sum_probs=95.3

Q ss_pred             hhhHhhhh-hhhhcccceecHHHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhc
Q 030946            5 SLWIKSVE-VFYLLQVRSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF   81 (168)
Q Consensus         5 ~~~~~~~~-~~~~~~~~~i~~~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~   81 (168)
                      .+|..... +.....+..|+++++.++++.  ++.+|||||++.||..||||||+|+|+..+.....             
T Consensus         7 ~~w~~~~~~~~~~~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~l~~~~~-------------   73 (139)
T 3d1p_A            7 NAWNGTESQSKNVSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFA-------------   73 (139)
T ss_dssp             -------------CCCEECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTTCTTGGG-------------
T ss_pred             HHhhccCccCCCCCCcceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHHhhhhcc-------------
Confidence            35555332 223557889999999999973  57999999999999999999999999987632110             


Q ss_pred             cccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           82 GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                            ....++.+.+...+++++++||+||.+|.              ||..++..|+..||++|++|.||+.+|.++|
T Consensus        74 ------~~~~~~~~~~~~~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g  133 (139)
T 3d1p_A           74 ------LDPLEFEKQIGIPKPDSAKELIFYCASGK--------------RGGEAQKVASSHGYSNTSLYPGSMNDWVSHG  133 (139)
T ss_dssp             ------SCHHHHHHHHSSCCCCTTSEEEEECSSSH--------------HHHHHHHHHHTTTCCSEEECTTHHHHHHHTT
T ss_pred             ------CCHHHHHHHHhccCCCCCCeEEEECCCCc--------------hHHHHHHHHHHcCCCCeEEeCCcHHHHHHcC
Confidence                  00112222212245678999999999987              9999999999999999999999999999999


Q ss_pred             CCCCC
Q 030946          162 LPEVS  166 (168)
Q Consensus       162 ~p~~~  166 (168)
                      +|+..
T Consensus       134 ~p~~~  138 (139)
T 3d1p_A          134 GDKLD  138 (139)
T ss_dssp             GGGCC
T ss_pred             CCCCC
Confidence            99864

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.93  E-value=2.6e-26  Score=158.98  Aligned_cols=98  Identities=30%  Similarity=0.377  Sum_probs=78.6

Q ss_pred             HHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccC
Q 030946           25 KEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQL  102 (168)
Q Consensus        25 ~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (168)
                      +||.+++++  ++.+|||||++.||..||||||+|+|+..+...                               ....+
T Consensus         1 eel~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------~~~~l   49 (106)
T 3hix_A            1 MVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR-------------------------------ASSSL   49 (106)
T ss_dssp             ------------CCEEEECSCHHHHHTCEETTCEECCGGGHHHH-------------------------------HHHHS
T ss_pred             ChHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHHHHHHH-------------------------------HHhcC
Confidence            356777763  369999999999999999999999999876432                               11346


Q ss_pred             CCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946          103 DKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus       103 ~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      +++++||+||.+|.              ||..+++.|+..||+||++|.||+.+|.++|+|+++.
T Consensus        50 ~~~~~ivvyc~~g~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~  100 (106)
T 3hix_A           50 EKSRDIYVYGAGDE--------------QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTELE  100 (106)
T ss_dssp             CTTSCEEEECSSHH--------------HHHHHHHHHHHTTCSCEEECTTHHHHHHHTTCCEEEC
T ss_pred             CCCCeEEEEECCCC--------------hHHHHHHHHHHcCCcCEEEecCCHHHHHHCCCCCCCC
Confidence            78899999999987              9999999999999999999999999999999998764

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.93  E-value=4.4e-26  Score=165.67  Aligned_cols=102  Identities=28%  Similarity=0.370  Sum_probs=89.7

Q ss_pred             eecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           21 SVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        21 ~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      .|+++++.++++++  +.+|||||++.||..||||||+|+|+..+...                               .
T Consensus         1 mIs~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~-------------------------------~   49 (141)
T 3ilm_A            1 MSDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDR-------------------------------A   49 (141)
T ss_dssp             -CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGGGHHHH-------------------------------H
T ss_pred             CCCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHHHHHHH-------------------------------H
Confidence            37899999999754  58999999999999999999999999876431                               1


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ...++++++||+||.+|.              ||..+++.|+..||++|++|.||+.+|.++|+|++++
T Consensus        50 ~~~l~~~~~ivvyC~~g~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  104 (141)
T 3ilm_A           50 SSSLEKSRDIYVYGAGDE--------------QTSQAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGI  104 (141)
T ss_dssp             HTTSCTTSEEEEECSSHH--------------HHHHHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEE
T ss_pred             HhcCCCCCeEEEEECCCh--------------HHHHHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccC
Confidence            135788999999999987              9999999999999999999999999999999998764

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.93  E-value=1.4e-25  Score=163.40  Aligned_cols=108  Identities=23%  Similarity=0.290  Sum_probs=92.8

Q ss_pred             hcccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946           16 LLQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF   93 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
                      ......|+++++.++++++  +.+|||||++.||..||||||+|+|+..+...                           
T Consensus        12 ~~~~~~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~---------------------------   64 (144)
T 3nhv_A           12 KKLSYETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKINED---------------------------   64 (144)
T ss_dssp             HHHHTEEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCSTT---------------------------
T ss_pred             hhcCcccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHhHH---------------------------
Confidence            3334679999999999865  79999999999999999999999999876421                           


Q ss_pred             HHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        94 ~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                          ....++++++||+||.+|.|.            ||.++++.|+..|| +|++|.||+.+|.++|+|++.+
T Consensus        65 ----~~~~l~~~~~ivvyC~~g~~~------------rs~~aa~~L~~~G~-~v~~l~GG~~~W~~~g~pv~~~  121 (144)
T 3nhv_A           65 ----TTKRLSKEKVIITYCWGPACN------------GATKAAAKFAQLGF-RVKELIGGIEYWRKENGEVEGT  121 (144)
T ss_dssp             ----TTTTCCTTSEEEEECSCTTCC------------HHHHHHHHHHHTTC-EEEEEESHHHHHHHTTCCCBSS
T ss_pred             ----HHhhCCCCCeEEEEECCCCcc------------HHHHHHHHHHHCCC-eEEEeCCcHHHHHHCCCCccCC
Confidence                224578899999999998432            99999999999999 5999999999999999999875

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.92  E-value=3e-25  Score=157.65  Aligned_cols=105  Identities=26%  Similarity=0.353  Sum_probs=91.1

Q ss_pred             hcccceecHHHHHHHhhcC--CeEEEecCChhhh-hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchH
Q 030946           16 LLQVRSVEAKEALRLQKEN--NFVILDVRPEAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE   92 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~-~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (168)
                      ......|+++++.++++++  +.+|||||++.|| ..||||||+|+|+..+..                           
T Consensus        11 ~~~~~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~~~l~~---------------------------   63 (124)
T 3flh_A           11 TYLSLYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDLAT---------------------------   63 (124)
T ss_dssp             HHHTTEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCHHHHHH---------------------------
T ss_pred             HhccceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCHHHHHH---------------------------
Confidence            3345689999999999764  4999999999998 999999999999987643                           


Q ss_pred             HHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccch--HHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           93 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR--SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~r--s~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                           ....++++++||+||.+|.              |  |..+++.|+..||+ |++|.||+.+|+.+|+|+.+.
T Consensus        64 -----~~~~l~~~~~ivvyC~~g~--------------r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~  120 (124)
T 3flh_A           64 -----RIGELDPAKTYVVYDWTGG--------------TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEHH  120 (124)
T ss_dssp             -----HGGGSCTTSEEEEECSSSS--------------CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC-
T ss_pred             -----HHhcCCCCCeEEEEeCCCC--------------chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCcc
Confidence                 2234788999999999998              6  89999999999997 999999999999999998764

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.92  E-value=1.8e-25  Score=151.41  Aligned_cols=93  Identities=30%  Similarity=0.433  Sum_probs=77.7

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      +.|+++++.+++++ +.+|||||++.||..||||||+|+|+..+..                                ..
T Consensus         2 ~~is~~~l~~~~~~-~~~liDvR~~~e~~~ghi~gAi~ip~~~l~~--------------------------------~~   48 (94)
T 1wv9_A            2 RKVRPEELPALLEE-GVLVVDVRPADRRSTPLPFAAEWVPLEKIQK--------------------------------GE   48 (94)
T ss_dssp             CEECGGGHHHHHHT-TCEEEECCCC--CCSCCSSCCEECCHHHHTT--------------------------------TC
T ss_pred             CcCCHHHHHHHHHC-CCEEEECCCHHHHhcccCCCCEECCHHHHHH--------------------------------HH
Confidence            57899999999976 7999999999999999999999999987643                                12


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      ..+++ ++||+||.+|.              ||..+++.|+..||+ |++|.||+.+|.++|
T Consensus        49 ~~l~~-~~ivvyC~~g~--------------rs~~a~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           49 HGLPR-RPLLLVCEKGL--------------LSQVAALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             CCCCS-SCEEEECSSSH--------------HHHHHHHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HhCCC-CCEEEEcCCCC--------------hHHHHHHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            34567 99999999997              999999999999998 999999999998875

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.91  E-value=2.4e-25  Score=155.02  Aligned_cols=99  Identities=30%  Similarity=0.427  Sum_probs=84.6

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVE   99 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (168)
                      ..|+++++    ..++.+|||||++.||..||||||+|+|+..+....                              ..
T Consensus         5 ~~is~~el----~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~------------------------------~~   50 (110)
T 2k0z_A            5 YAISLEEV----NFNDFIVVDVRELDEYEELHLPNATLISVNDQEKLA------------------------------DF   50 (110)
T ss_dssp             TEEETTTC----CGGGSEEEEEECHHHHHHSBCTTEEEEETTCHHHHH------------------------------HH
T ss_pred             eeeCHHHh----ccCCeEEEECCCHHHHhcCcCCCCEEcCHHHHHHHH------------------------------Hh
Confidence            46777776    234799999999999999999999999998764321                              11


Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ..++++++||+||.+|.              ||..+++.|+..||++ ++|.||+.+|.++|+|++.+
T Consensus        51 ~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~~-~~l~GG~~~W~~~g~p~~~~  103 (110)
T 2k0z_A           51 LSQHKDKKVLLHCRAGR--------------RALDAAKSMHELGYTP-YYLEGNVYDFEKYGFRMVYD  103 (110)
T ss_dssp             HHSCSSSCEEEECSSSH--------------HHHHHHHHHHHTTCCC-EEEESCGGGTTTTTCCCBCC
T ss_pred             cccCCCCEEEEEeCCCc--------------hHHHHHHHHHHCCCCE-EEecCCHHHHHHCCCcEecC
Confidence            24688999999999987              9999999999999999 99999999999999999865

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=148.87  Aligned_cols=117  Identities=22%  Similarity=0.228  Sum_probs=88.1

Q ss_pred             ceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh-h
Q 030946           20 RSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT-G   97 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   97 (168)
                      +.|+++++.++++++ +.+|||||++.||..||||||+|+|+..+........ ..               ..+.+.. .
T Consensus         1 ~~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~-~~---------------~~~~l~~~~   64 (127)
T 3i2v_A            1 SRVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESL-KL---------------LKEAIWEEK   64 (127)
T ss_dssp             CEECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTTCHHHH-HH---------------HHHHHHHHH
T ss_pred             CCCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhhhhhhH-HH---------------HHHHHhhhc
Confidence            368999999999765 5999999999999999999999999988754321100 00               0011110 0


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc------CccceeEccccHHHHHhcCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN------GYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~------G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      ...+++++++||+||.+|.              ||..+++.|...      |+.+|++|.||+.+|.++..|..+
T Consensus        65 ~~~~~~~~~~ivv~C~~G~--------------rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~~~p  125 (127)
T 3i2v_A           65 QGTQEGAAVPIYVICKLGN--------------DSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDGTFP  125 (127)
T ss_dssp             TTC---CCEEEEEECSSSS--------------HHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCTTSC
T ss_pred             ccccCCCCCeEEEEcCCCC--------------cHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCCCCC
Confidence            1123456779999999997              999999999999      688999999999999998877654

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.90  E-value=1.7e-23  Score=166.06  Aligned_cols=132  Identities=19%  Similarity=0.265  Sum_probs=104.6

Q ss_pred             hhhhHhhhhhhhhcc--------------cceecHHHHHHHhhcCCeEEEecCChhhhh--------hcCCCCcEEechh
Q 030946            4 LSLWIKSVEVFYLLQ--------------VRSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIY   61 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~--------------~~~i~~~~l~~~l~~~~~~liDvR~~~e~~--------~ghIpgAi~ip~~   61 (168)
                      +..|..++.++....              ...|+++++.+++++++.+|||||++.||.        .||||||+|+|+.
T Consensus       117 ~~~w~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~  196 (271)
T 1e0c_A          117 LTAWLAEDRPLSRELPAPAGGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWT  196 (271)
T ss_dssp             HHHHHHTTCCCBCCCCCCCCSCCCCCCCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGG
T ss_pred             HHHHHHcCCCccCCCCCCCCCCccccCCccccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHH
Confidence            567877776554322              135799999999987789999999999999        8999999999998


Q ss_pred             hHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH
Q 030946           62 RLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL  141 (168)
Q Consensus        62 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~  141 (168)
                      .+.....             ..+.. +++.+.+..   .+++++++||+||.+|.              ||..++..|+.
T Consensus       197 ~~~~~~~-------------~~~~~-~~l~~~~~~---~~~~~~~~ivvyC~~G~--------------rs~~a~~~L~~  245 (271)
T 1e0c_A          197 AAMDPSR-------------ALRIR-TDIAGRLEE---LGITPDKEIVTHCQTHH--------------RSGLTYLIAKA  245 (271)
T ss_dssp             GGEEGGG-------------TTEEC-TTHHHHHHH---TTCCTTSEEEEECSSSS--------------HHHHHHHHHHH
T ss_pred             HhCCCCC-------------CCCCH-HHHHHHHHH---cCCCCCCCEEEECCchH--------------HHHHHHHHHHH
Confidence            8754211             11111 334443332   46889999999999997              99999999999


Q ss_pred             cCccceeEccccHHHHHhc-CCCCCC
Q 030946          142 NGYKNVYHLEGGLYKWFKE-ELPEVS  166 (168)
Q Consensus       142 ~G~~~v~~l~GG~~~w~~~-g~p~~~  166 (168)
                      +||++|++|+||+.+|.+. |+|+++
T Consensus       246 ~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          246 LGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             TTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             cCCCCceeeCCcHHHHhcCCCCCCcC
Confidence            9999999999999999998 999874

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.90  E-value=2.3e-24  Score=158.39  Aligned_cols=111  Identities=21%  Similarity=0.300  Sum_probs=91.9

Q ss_pred             hhcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      ....+..|+++++.+++++++.+|||||++.||..||||||+|+|+..+...                       +.+++
T Consensus        23 ~~~~~~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~~~-----------------------~~~l~   79 (152)
T 1t3k_A           23 MARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK-----------------------ISHLV   79 (152)
T ss_dssp             CCSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT-----------------------HHHHH
T ss_pred             hcCCCceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHHHH-----------------------HHHHH
Confidence            3567789999999998876789999999999999999999999999765321                       11111


Q ss_pred             HhhhhccCCCCCeEEEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHH--------cCccceeEccccHHHHHhcCCCCC
Q 030946           95 QTGVESQLDKDAKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL--------NGYKNVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~--------~G~~~v~~l~GG~~~w~~~g~p~~  165 (168)
                           ..++++++||+||. +|.              |+..++..|.+        .||+||++|+||+.+|.++|+|++
T Consensus        80 -----~~~~~~~~iVvyC~~~G~--------------rs~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  140 (152)
T 1t3k_A           80 -----QNVKDKDTLVFHSALSQV--------------RGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVC  140 (152)
T ss_dssp             -----HTCCSCCEEEESSSCCSS--------------SHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSC
T ss_pred             -----HhcCCCCEEEEEcCCCCc--------------chHHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccc
Confidence                 23468899999999 776              88888887753        899999999999999999999998


Q ss_pred             CC
Q 030946          166 SE  167 (168)
Q Consensus       166 ~~  167 (168)
                      +.
T Consensus       141 ~~  142 (152)
T 1t3k_A          141 RC  142 (152)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.89  E-value=2.3e-23  Score=165.25  Aligned_cols=123  Identities=23%  Similarity=0.274  Sum_probs=97.0

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      ...|+++++.+++++++.+|||||++.||..||||||+|+|+..+......          ..+++...+.+.+++.   
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~----------~~~~~~~~~~~~~~~~---   74 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPP----------APGLQPPREQLESLFG---   74 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTT----------CTTSCCCHHHHHHHHH---
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCC----------CCCCCCCHHHHHHHHH---
Confidence            458999999999976689999999999999999999999999876432100          1122222222223332   


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ..+++++++||+||.+|.             .+|.++++.|+..||++|++|+||+.+|+++|+|++++
T Consensus        75 ~~gi~~~~~vvvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~  130 (271)
T 1e0c_A           75 ELGHRPEAVYVVYDDEGG-------------GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRE  130 (271)
T ss_dssp             HHTCCTTCEEEEECSSSS-------------HHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCC
T ss_pred             HcCCCCCCeEEEEcCCCC-------------ccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCC
Confidence            245789999999999885             38999999999999999999999999999999999864

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=1.2e-23  Score=153.45  Aligned_cols=113  Identities=23%  Similarity=0.326  Sum_probs=86.9

Q ss_pred             cceecHHHHHHHhhc-CCeEEEecCChhhhhh-cCC------CCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           19 VRSVEAKEALRLQKE-NNFVILDVRPEAEFKE-AHP------PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~-~~~~liDvR~~~e~~~-ghI------pgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      +..|+++++.+++++ ++.+|||||++.||.. |||      |||+|+|+.. ...                     ...
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~~---------------------~~~   61 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SDG---------------------THN   61 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TTS---------------------CBC
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-ccc---------------------ccC
Confidence            567999999999975 5899999999999997 999      9999999876 210                     001


Q ss_pred             hHHHHh----hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH------------
Q 030946           91 PEFLQT----GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL------------  154 (168)
Q Consensus        91 ~~~~~~----~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~------------  154 (168)
                      ++|.+.    ....+++++++|||||.+|.              ||..+++.|+..||+||++|+||+            
T Consensus        62 ~~~~~~l~~~l~~~~~~~~~~ivvyC~~G~--------------rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~  127 (148)
T 2fsx_A           62 DNFLAELRDRIPADADQHERPVIFLCRSGN--------------RSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGA  127 (148)
T ss_dssp             TTHHHHHHHHCC-------CCEEEECSSSS--------------THHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCS
T ss_pred             HHHHHHHHHHHhhccCCCCCEEEEEcCCCh--------------hHHHHHHHHHHcCCcceEEEcCChhhhhhhcccccc
Confidence            111111    11134578899999999997              999999999999999999999999            


Q ss_pred             HHHHhcCCCCCCC
Q 030946          155 YKWFKEELPEVSE  167 (168)
Q Consensus       155 ~~w~~~g~p~~~~  167 (168)
                      .+|+++|+|++.+
T Consensus       128 ~~W~~~glp~~~~  140 (148)
T 2fsx_A          128 TGWRAVGLPWRQG  140 (148)
T ss_dssp             SSTTTTTCSEECC
T ss_pred             ccHHHcCCCCCcc
Confidence            7899999998754

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.89  E-value=2.2e-23  Score=166.14  Aligned_cols=121  Identities=22%  Similarity=0.244  Sum_probs=95.5

Q ss_pred             ceecHHHHHHHhhcCCeEEEecC----------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           20 RSVEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR----------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ..|+++++.+++++++.+|||||          ++.||..||||||+|+|+..+.....          ...+++.+.+.
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~----------~~~~~~~~~~~   73 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTS----------PLPHMLPRPET   73 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSS----------SSSSCCCCHHH
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCC----------CCCCCCCCHHH
Confidence            57999999999987789999999          78899999999999999986543110          00111211122


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccch-HHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR-SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~r-s~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      +.+++.   ..+++++++||+||.+|.              + |.++++.|+.+||++|++|+||+.+|.++|+|++++
T Consensus        74 ~~~~~~---~~gi~~~~~ivvyc~~g~--------------~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  135 (280)
T 1urh_A           74 FAVAMR---ELGVNQDKHLIVYDEGNL--------------FSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEG  135 (280)
T ss_dssp             HHHHHH---HTTCCTTSEEEEECSSSC--------------SSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBS
T ss_pred             HHHHHH---HcCCCCCCeEEEECCCCC--------------ccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCC
Confidence            233332   356789999999999987              6 999999999999999999999999999999999864

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.88  E-value=3.2e-23  Score=147.64  Aligned_cols=120  Identities=26%  Similarity=0.383  Sum_probs=82.8

Q ss_pred             cccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHH--------HHHHHhhhhhccccCCCC
Q 030946           17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAW--------DIARRAAFAFFGIFSGTE   88 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~   88 (168)
                      ..+..|+++++.+   .++.+|||||++.||..||||||+|+|+..+.......        ..+...+..+.     ..
T Consensus         2 ~~~~~i~~~el~~---~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~   73 (134)
T 3g5j_A            2 NAMSVIKIEKALK---LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYV-----SY   73 (134)
T ss_dssp             ---CEECHHHHTT---CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHH-----GG
T ss_pred             CCccccCHHHHHh---cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccc-----cc
Confidence            3467899999876   45899999999999999999999999997653221100        00000000000     01


Q ss_pred             CchHHHHhhhhccCCCC-CeEEEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           89 ENPEFLQTGVESQLDKD-AKIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-~~iV~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      .++++...  ...++++ ++||+||. +|.              ||..+++.|+..|| +|++|.||+.+|++..
T Consensus        74 ~~~~~~~~--~~~~~~~~~~ivvyC~~~G~--------------rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~~  131 (134)
T 3g5j_A           74 KLKDIYLQ--AAELALNYDNIVIYCARGGM--------------RSGSIVNLLSSLGV-NVYQLEGGYKAYRNFV  131 (134)
T ss_dssp             GHHHHHHH--HHHHHTTCSEEEEECSSSSH--------------HHHHHHHHHHHTTC-CCEEETTHHHHHHHHH
T ss_pred             cHHHHHHH--HHHhccCCCeEEEEECCCCh--------------HHHHHHHHHHHcCC-ceEEEeCcHHHHHHHh
Confidence            12233322  2235677 99999995 675              99999999999999 9999999999998753

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.88  E-value=6.2e-23  Score=166.96  Aligned_cols=121  Identities=17%  Similarity=0.235  Sum_probs=95.5

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhh-hhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAE-FKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e-~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      ...|+++++.+++++++.+|||||++.| |..||||||+|+|+...+...            ..+.+...+.+.+.+   
T Consensus        39 ~~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~------------~~~~~~~~~~~~~~l---  103 (318)
T 3hzu_A           39 ERLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDP------------RVRDYINGEQFAELM---  103 (318)
T ss_dssp             GGEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCS------------SSSSBCCHHHHHHHH---
T ss_pred             CceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccC------------cccCCCCHHHHHHHH---
Confidence            4579999999999877899999999876 999999999999986433210            011111112222333   


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ...+++++++||+||.+|.             .+|.++++.|+.+||+||++|+||+.+|+++|+|++++
T Consensus       104 ~~lgi~~~~~vVvyc~~g~-------------~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  160 (318)
T 3hzu_A          104 DRKGIARDDTVVIYGDKSN-------------WWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLD  160 (318)
T ss_dssp             HHTTCCTTCEEEEECSGGG-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCC
T ss_pred             HHcCCCCCCeEEEECCCCC-------------ccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccC
Confidence            2356889999999999886             38999999999999999999999999999999999864

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.88  E-value=3.3e-23  Score=166.69  Aligned_cols=133  Identities=18%  Similarity=0.319  Sum_probs=103.0

Q ss_pred             hhhhHhhhhhhhhcc--------------cceecHHHHHHHhhcCCeEEEecCChhhh------------hhcCCCCcEE
Q 030946            4 LSLWIKSVEVFYLLQ--------------VRSVEAKEALRLQKENNFVILDVRPEAEF------------KEAHPPGAIN   57 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~--------------~~~i~~~~l~~~l~~~~~~liDvR~~~e~------------~~ghIpgAi~   57 (168)
                      +..|..++.++....              ...|+++++.+++++++.+|||||++.||            ..||||||+|
T Consensus       130 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~n  209 (296)
T 1rhs_A          130 FRNWLKEGHPVTSEPSRPEPAIFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVN  209 (296)
T ss_dssp             HHHHHHTTCCCBCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEE
T ss_pred             HHHHHHcCCccccCCCCCCCCCcccCCCcceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEe
Confidence            567888876654321              25799999999998778999999999999            7899999999


Q ss_pred             echhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHH
Q 030946           58 VQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY  137 (168)
Q Consensus        58 ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~  137 (168)
                      +|+..+....              +.+...+++.+.+.   ..+++++++||+||.+|.              ||..++.
T Consensus       210 ip~~~l~~~~--------------~~~~~~~~l~~~~~---~~~~~~~~~ivv~C~sG~--------------rs~~a~~  258 (296)
T 1rhs_A          210 MPFMNFLTED--------------GFEKSPEELRAMFE---AKKVDLTKPLIATCRKGV--------------TACHIAL  258 (296)
T ss_dssp             CCGGGGBCTT--------------SCBCCHHHHHHHHH---HTTCCTTSCEEEECSSSS--------------THHHHHH
T ss_pred             ecHHHhcCCC--------------CcCCCHHHHHHHHH---HcCCCCCCCEEEECCcHH--------------HHHHHHH
Confidence            9998774311              00111111112221   135788999999999998              9999999


Q ss_pred             HHHHcCccceeEccccHHHHHh-cCCCCCCC
Q 030946          138 LLVLNGYKNVYHLEGGLYKWFK-EELPEVSE  167 (168)
Q Consensus       138 ~L~~~G~~~v~~l~GG~~~w~~-~g~p~~~~  167 (168)
                      .|..+||+||++|+||+.+|.. .++|++.+
T Consensus       259 ~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  289 (296)
T 1rhs_A          259 AAYLCGKPDVAIYDGSWFEWFHRAPPETWVS  289 (296)
T ss_dssp             HHHHTTCCCCEEESSHHHHHHHHSCGGGEEB
T ss_pred             HHHHcCCCCceeeCCcHHHHhcCCCCCcccC
Confidence            9999999999999999999988 79998754

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.88  E-value=3.7e-23  Score=164.83  Aligned_cols=132  Identities=28%  Similarity=0.427  Sum_probs=93.4

Q ss_pred             hhhhHhhhhhhhhccc--------------ceecHHHHHHHhhcCCeEEEecCChhhh-----------hhcCCCCcEEe
Q 030946            4 LSLWIKSVEVFYLLQV--------------RSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINV   58 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~~--------------~~i~~~~l~~~l~~~~~~liDvR~~~e~-----------~~ghIpgAi~i   58 (168)
                      +..|..++.++.....              ..|+++++.+++++++.+|||||++.||           ..||||||+|+
T Consensus       122 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~ni  201 (280)
T 1urh_A          122 LAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNV  201 (280)
T ss_dssp             HHHHHHTTCCCBBSCCCCCCCCCCCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEEC
T ss_pred             HHHHHHCCCcccCCCCCCCCCccccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEe
Confidence            5678887766543221              3499999999998778999999999999           68999999999


Q ss_pred             chhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH
Q 030946           59 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL  138 (168)
Q Consensus        59 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~  138 (168)
                      |+..+...               +.+...+++.+.+   ...+++++++||+||.+|.              ||..++..
T Consensus       202 p~~~~~~~---------------~~~~~~~~l~~~~---~~~~~~~~~~ivv~C~~G~--------------rs~~a~~~  249 (280)
T 1urh_A          202 PWTELVRE---------------GELKTTDELDAIF---FGRGVSYDKPIIVSCGSGV--------------TAAVVLLA  249 (280)
T ss_dssp             CGGGGBSS---------------SSBCCHHHHHHHH---HTTTCCSSSCEEEECCSSS--------------THHHHHHH
T ss_pred             eHHHhhcC---------------CccCCHHHHHHHH---HHcCCCCCCCEEEECChHH--------------HHHHHHHH
Confidence            99876431               0011111111111   1236788999999999998              99999999


Q ss_pred             HHHcCccceeEccccHHHHHh-cCCCCCCC
Q 030946          139 LVLNGYKNVYHLEGGLYKWFK-EELPEVSE  167 (168)
Q Consensus       139 L~~~G~~~v~~l~GG~~~w~~-~g~p~~~~  167 (168)
                      |+.+||+||++|+||+.+|.. .++|++..
T Consensus       250 L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~  279 (280)
T 1urh_A          250 LATLDVPNVKLYDGAWSEWGARADLPVEPV  279 (280)
T ss_dssp             HHHTTCSSCEEECCSCCC------------
T ss_pred             HHHcCCCCceeeCChHHHHhcCCCCCceec
Confidence            999999999999999999987 59999864

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.88  E-value=9.5e-23  Score=146.50  Aligned_cols=111  Identities=26%  Similarity=0.394  Sum_probs=87.9

Q ss_pred             ccceecHHHHHHHhh-cCCeEEEecCChhhhhhc-CC------CCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           18 QVRSVEAKEALRLQK-ENNFVILDVRPEAEFKEA-HP------PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~-~~~~~liDvR~~~e~~~g-hI------pgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ....|+++++.++++ .++.+|||||++.||..+ |+      |||+|||+..+..                        
T Consensus         3 ~~~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~~~------------------------   58 (134)
T 1vee_A            3 SGSSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDK------------------------   58 (134)
T ss_dssp             CSCBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGGGH------------------------
T ss_pred             CCCccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccccC------------------------
Confidence            356799999999987 457999999999999863 33      7999999876421                        


Q ss_pred             chHHHHhhhhcc-CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccH---HHHHhcCCCCC
Q 030946           90 NPEFLQTGVESQ-LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGL---YKWFKEELPEV  165 (168)
Q Consensus        90 ~~~~~~~~~~~~-~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~---~~w~~~g~p~~  165 (168)
                       ..|++...... .+++++||+||.+|.              ||..++..|.++||++|+.|.||+   .+|+++|+|++
T Consensus        59 -~~~~~~l~~~~~~~~~~~ivv~C~sG~--------------RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~  123 (134)
T 1vee_A           59 -PGFLKKLSLKFKDPENTTLYILDKFDG--------------NSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWI  123 (134)
T ss_dssp             -HHHHHHHHTTCSCGGGCEEEEECSSST--------------THHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEE
T ss_pred             -hhHHHHHHHHhCCCCCCEEEEEeCCCC--------------cHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCC
Confidence             11221101111 267899999999998              999999999999999999999999   78999999987


Q ss_pred             CC
Q 030946          166 SE  167 (168)
Q Consensus       166 ~~  167 (168)
                      .+
T Consensus       124 ~~  125 (134)
T 1vee_A          124 EP  125 (134)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.87  E-value=1.7e-22  Score=171.86  Aligned_cols=115  Identities=26%  Similarity=0.383  Sum_probs=101.4

Q ss_pred             hhhhHhhhhhhhhcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccc
Q 030946            4 LSLWIKSVEVFYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI   83 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~   83 (168)
                      +..|..++.+  ......++++++.+++++++.+|||+|++.||..||||||+|+|+..+..                  
T Consensus       360 ~~~W~~~g~~--~~~~~~i~~~~l~~~~~~~~~~lvDvR~~~e~~~ghIpgA~~ip~~~l~~------------------  419 (474)
T 3tp9_A          360 AAVDRAAPDD--VASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIPLSKLAA------------------  419 (474)
T ss_dssp             GGGTTCCGGG--EECCEEECHHHHHHTTTTTCCEEEECSCHHHHHHCBCTTCEECCHHHHTT------------------
T ss_pred             HHHHHhcccc--cccccccCHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHHHHHH------------------
Confidence            5678777754  45567899999999998778999999999999999999999999987643                  


Q ss_pred             cCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946           84 FSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  163 (168)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p  163 (168)
                                    ....++++++||+||++|.              ||..++..|+.+||++|++|+||+.+|.++|+|
T Consensus       420 --------------~~~~l~~~~~vvv~C~~G~--------------ra~~a~~~L~~~G~~~v~~~~Gg~~~W~~~g~p  471 (474)
T 3tp9_A          420 --------------HIHDVPRDGSVCVYCRTGG--------------RSAIAASLLRAHGVGDVRNMVGGYEAWRGKGFP  471 (474)
T ss_dssp             --------------TGGGSCSSSCEEEECSSSH--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHTTCC
T ss_pred             --------------HHhcCCCCCEEEEECCCCH--------------HHHHHHHHHHHcCCCCEEEecChHHHHHhCCCC
Confidence                          2235788999999999997              999999999999999999999999999999999


Q ss_pred             CCC
Q 030946          164 EVS  166 (168)
Q Consensus       164 ~~~  166 (168)
                      +++
T Consensus       472 ~~~  474 (474)
T 3tp9_A          472 VEA  474 (474)
T ss_dssp             CBC
T ss_pred             CCC
Confidence            874

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.87  E-value=8.2e-23  Score=165.14  Aligned_cols=131  Identities=20%  Similarity=0.356  Sum_probs=101.4

Q ss_pred             hhhhHhhhhhhhhcc--------------cceecHHHHHHHhhcCCeEEEecCChhhh-----------hhcCCCCcEEe
Q 030946            4 LSLWIKSVEVFYLLQ--------------VRSVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINV   58 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~--------------~~~i~~~~l~~~l~~~~~~liDvR~~~e~-----------~~ghIpgAi~i   58 (168)
                      +..|..++.++....              ...++++++.+.+++++.+|||||++.||           ..||||||+|+
T Consensus       145 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAini  224 (302)
T 3olh_A          145 LRHWLRQNLPLSSGKSQPAPAEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNI  224 (302)
T ss_dssp             HHHHHHSCCC-CCSCCCCCCCCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEEC
T ss_pred             HHHHHHcCCCcccCCCCcCcCccccccCccceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceec
Confidence            567887776654321              12589999999998778999999999999           78999999999


Q ss_pred             chhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHH
Q 030946           59 QIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL  138 (168)
Q Consensus        59 p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~  138 (168)
                      |+..+....              +.+...+++.+.+.   ..+++++++||+||.+|.              ||+.++..
T Consensus       225 P~~~l~~~~--------------~~~~~~~~l~~~~~---~~~~~~~~~iv~yC~sG~--------------rs~~a~~~  273 (302)
T 3olh_A          225 PFTDFLSQE--------------GLEKSPEEIRHLFQ---EKKVDLSKPLVATCGSGV--------------TACHVALG  273 (302)
T ss_dssp             CGGGGBCSS--------------SCBCCHHHHHHHHH---HTTCCTTSCEEEECSSSS--------------TTHHHHHH
T ss_pred             CHHHhcCCC--------------CccCCHHHHHHHHH---hcCCCCCCCEEEECCChH--------------HHHHHHHH
Confidence            998875421              11111112222222   246888999999999998              99999999


Q ss_pred             HHHcCccceeEccccHHHHHhcCCCCC
Q 030946          139 LVLNGYKNVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus       139 L~~~G~~~v~~l~GG~~~w~~~g~p~~  165 (168)
                      |..+||++|++|+|||.+|.++++|..
T Consensus       274 L~~~G~~~v~~~~Gg~~~W~~~~~P~~  300 (302)
T 3olh_A          274 AYLCGKPDVPIYDGSWVEWYMRARPED  300 (302)
T ss_dssp             HHTTTCCCCCEESSHHHHHHHHHCCCC
T ss_pred             HHHcCCCCeeEeCCcHHHHhhccCCCC
Confidence            999999999999999999999998853

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.87  E-value=1.6e-22  Score=161.47  Aligned_cols=134  Identities=23%  Similarity=0.334  Sum_probs=101.3

Q ss_pred             hhhhHhhhhhhhhcc---------------cceecHHHHHHHhh---cCCeEEEecCChhhhh----------------h
Q 030946            4 LSLWIKSVEVFYLLQ---------------VRSVEAKEALRLQK---ENNFVILDVRPEAEFK----------------E   49 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~---------------~~~i~~~~l~~~l~---~~~~~liDvR~~~e~~----------------~   49 (168)
                      +..|..++.++....               -..|+++++.++++   .++..|||||++.||.                .
T Consensus       115 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~  194 (285)
T 1uar_A          115 RQKWVEEGRPLTTEVPSYPPGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRA  194 (285)
T ss_dssp             HHHHHHHTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCC
T ss_pred             HHHHHHCCCcccCCCCcccCCCcccccCCcceEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccC
Confidence            567887776654311               13499999999984   2356899999999997                7


Q ss_pred             cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCcc
Q 030946           50 AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQ  129 (168)
Q Consensus        50 ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~  129 (168)
                      ||||||+|+|+..+....              +.+.+.   +++.+.....+++++++||+||.+|.             
T Consensus       195 ghIpgA~~ip~~~~~~~~--------------~~~~~~---~~l~~~~~~~g~~~~~~ivvyC~~G~-------------  244 (285)
T 1uar_A          195 GHIPGAKNIPWAKAVNPD--------------GTFKSA---EELRALYEPLGITKDKDIVVYCRIAE-------------  244 (285)
T ss_dssp             SBCTTCEECCGGGGBCTT--------------SCBCCH---HHHHHHHGGGTCCTTSEEEEECSSHH-------------
T ss_pred             CcCCCccccCHHHhcCCC--------------CcCCCH---HHHHHHHHHcCCCCCCCEEEECCchH-------------
Confidence            999999999998764311              111111   12222212245789999999999997             


Q ss_pred             chHHHHHHHHH-HcCccceeEccccHHHHH-hcCCCCCCCC
Q 030946          130 SRSLIAAYLLV-LNGYKNVYHLEGGLYKWF-KEELPEVSEE  168 (168)
Q Consensus       130 ~rs~~a~~~L~-~~G~~~v~~l~GG~~~w~-~~g~p~~~~~  168 (168)
                       ||..+++.|+ .+||++|++|+||+.+|. ++|+|++++.
T Consensus       245 -rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g~  284 (285)
T 1uar_A          245 -RSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  284 (285)
T ss_dssp             -HHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             -HHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCcccCC
Confidence             9999999999 999999999999999998 8999998763

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.87  E-value=8.9e-23  Score=162.30  Aligned_cols=132  Identities=27%  Similarity=0.323  Sum_probs=99.4

Q ss_pred             hhhhHhhhhhhhhccc---------------ceecHHHHHHHhhcCCeEEEecCChhhhhh----------------cCC
Q 030946            4 LSLWIKSVEVFYLLQV---------------RSVEAKEALRLQKENNFVILDVRPEAEFKE----------------AHP   52 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~~---------------~~i~~~~l~~~l~~~~~~liDvR~~~e~~~----------------ghI   52 (168)
                      +..|..++.++.....               ..++++++.+++.+++  |||||++.||..                |||
T Consensus       113 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~~--liDvR~~~e~~~~~~~~~~~~~~~~~~~ghI  190 (277)
T 3aay_A          113 RKKWELDGRPLSSDPVSRPVTSYTASPPDNTIRAFRDEVLAAINVKN--LIDVRSPDEFSGKILAPAHLPQEQSQRPGHI  190 (277)
T ss_dssp             HHHHHHTTCCCBCCCCCCCCCCCCCCCCCGGGEECHHHHHHTTTTSE--EEECSCHHHHHTSCCC-----CCCCSCCSBC
T ss_pred             HHHHHHcCCccccCCCCcCCCCccccCcccchhcCHHHHHHhcCCCC--EEEeCChHHeeeeecccccccccccccCCcC
Confidence            5678887766543221               1378999999987644  999999999985                999


Q ss_pred             CCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchH
Q 030946           53 PGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRS  132 (168)
Q Consensus        53 pgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs  132 (168)
                      |||+|+|+..+....              +.+.+.+++.+.+.   ..+++++++||+||.+|.              ||
T Consensus       191 pgA~~ip~~~~~~~~--------------~~~~~~~~l~~~~~---~~~~~~~~~iv~yC~~G~--------------rs  239 (277)
T 3aay_A          191 PGAINVPWSRAANED--------------GTFKSDEELAKLYA---DAGLDNSKETIAYCRIGE--------------RS  239 (277)
T ss_dssp             TTCEECCGGGGBCTT--------------SCBCCHHHHHHHHH---HHTCCTTSCEEEECSSHH--------------HH
T ss_pred             CCceecCHHHhcCCC--------------CcCCCHHHHHHHHH---HcCCCCCCCEEEEcCcHH--------------HH
Confidence            999999997653210              11111112222222   246789999999999997              99


Q ss_pred             HHHHHHHHH-cCccceeEccccHHHHHh-cCCCCCCCC
Q 030946          133 LIAAYLLVL-NGYKNVYHLEGGLYKWFK-EELPEVSEE  168 (168)
Q Consensus       133 ~~a~~~L~~-~G~~~v~~l~GG~~~w~~-~g~p~~~~~  168 (168)
                      ..++..|++ +||+||++|+||+.+|.+ +|+|++.++
T Consensus       240 ~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g~  277 (277)
T 3aay_A          240 SHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELGS  277 (277)
T ss_dssp             HHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCCC
T ss_pred             HHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCccCC
Confidence            999999995 999999999999999998 999998764

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.87  E-value=1.3e-22  Score=161.37  Aligned_cols=120  Identities=20%  Similarity=0.245  Sum_probs=93.5

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCC-hhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVRP-EAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~-~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      ..|+++++.+++++++.+|||||+ +.||..||||||+|+|+..+.....            .+.+...+.+.+.+   .
T Consensus         6 ~~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~------------~~~~~~~~~~~~~~---~   70 (277)
T 3aay_A            6 VLVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPV------------KRDFVDAQQFSKLL---S   70 (277)
T ss_dssp             HEECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSS------------SSSBCCHHHHHHHH---H
T ss_pred             ceEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCC------------CCCCCCHHHHHHHH---H
Confidence            579999999999877899999998 8999999999999999875432100            01111111122222   2


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ..+++++++||+||.+|.             .+|.++++.|+.+||++|++|.||+.+|.++|+|++++
T Consensus        71 ~~gi~~~~~vvvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  126 (277)
T 3aay_A           71 ERGIANEDTVILYGGNNN-------------WFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSD  126 (277)
T ss_dssp             HHTCCTTSEEEEECSGGG-------------HHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCC
T ss_pred             HcCCCCCCeEEEECCCCC-------------chHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccC
Confidence            245889999999999875             26899999999999999999999999999999999864

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.87  E-value=1.5e-22  Score=134.46  Aligned_cols=80  Identities=28%  Similarity=0.396  Sum_probs=68.3

Q ss_pred             CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCC
Q 030946           35 NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACAT  114 (168)
Q Consensus        35 ~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~  114 (168)
                      +.+|||||++.||..||||||+|+|+..+...                           +.   ....+++++||+||.+
T Consensus         1 ~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~---------------------------~~---~l~~~~~~~ivv~C~~   50 (85)
T 2jtq_A            1 AEHWIDVRVPEQYQQEHVQGAINIPLKEVKER---------------------------IA---TAVPDKNDTVKVYCNA   50 (85)
T ss_dssp             CEEEEECSCHHHHTTEEETTCEECCHHHHHHH---------------------------HH---HHCCCTTSEEEEEESS
T ss_pred             CCEEEECCCHHHHHhCCCCCCEEcCHHHHHHH---------------------------HH---HhCCCCCCcEEEEcCC
Confidence            46899999999999999999999999876431                           11   1235788999999999


Q ss_pred             CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          115 GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       115 g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      |.              ||..+++.|++.||++|+++ ||+.+|..
T Consensus        51 g~--------------rs~~aa~~L~~~G~~~v~~l-GG~~~w~~   80 (85)
T 2jtq_A           51 GR--------------QSGQAKEILSEMGYTHVENA-GGLKDIAM   80 (85)
T ss_dssp             SH--------------HHHHHHHHHHHTTCSSEEEE-EETTTCCS
T ss_pred             Cc--------------hHHHHHHHHHHcCCCCEEec-cCHHHHhc
Confidence            87              99999999999999999999 99999853

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.87  E-value=3.7e-22  Score=161.31  Aligned_cols=123  Identities=22%  Similarity=0.326  Sum_probs=94.0

Q ss_pred             cceecHHHHHHHhhcC----CeEEEecC---------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccC
Q 030946           19 VRSVEAKEALRLQKEN----NFVILDVR---------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS   85 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~----~~~liDvR---------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      ...|+++++.++++++    +.+|||||         ++.||..||||||+|+|+..+.....          ...++++
T Consensus        21 ~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~----------~~~~~lp   90 (302)
T 3olh_A           21 QSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTS----------PYDHMLP   90 (302)
T ss_dssp             CCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSC----------SSSSCCC
T ss_pred             CCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCC----------CCCCCCC
Confidence            4579999999999865    89999999         78999999999999999976432110          1112222


Q ss_pred             CCCCchHHHHhhhhccCCCCCeEEEEeCC--CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946           86 GTEENPEFLQTGVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  163 (168)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~iV~yc~~--g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p  163 (168)
                      ..+.+.+.+.   ..+++++++||+||.+  +.             .+|.++++.|+.+||++|++|+||+.+|.++|+|
T Consensus        91 ~~~~~~~~~~---~lgi~~~~~VVvyc~~~~g~-------------~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p  154 (302)
T 3olh_A           91 GAEHFAEYAG---RLGVGAATHVVIYDASDQGL-------------YSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLP  154 (302)
T ss_dssp             CHHHHHHHHH---HTTCCSSCEEEEECCCTTSC-------------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC
T ss_pred             CHHHHHHHHH---HcCCCCCCEEEEEeCCCCCc-------------chHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCC
Confidence            2222333333   3567899999999975  32             2799999999999999999999999999999999


Q ss_pred             CCCC
Q 030946          164 EVSE  167 (168)
Q Consensus       164 ~~~~  167 (168)
                      ++++
T Consensus       155 ~~~~  158 (302)
T 3olh_A          155 LSSG  158 (302)
T ss_dssp             -CCS
T ss_pred             cccC
Confidence            8865

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.86  E-value=4e-22  Score=160.29  Aligned_cols=122  Identities=21%  Similarity=0.288  Sum_probs=93.8

Q ss_pred             ceecHHHHHHHhhc----CCeEEEecC--------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCC
Q 030946           20 RSVEAKEALRLQKE----NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT   87 (168)
Q Consensus        20 ~~i~~~~l~~~l~~----~~~~liDvR--------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~   87 (168)
                      ..|+++++.+++++    ++.+|||||        ++.||..||||||+|+|+..+.....          ...++++..
T Consensus         8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~----------~~~~~lp~~   77 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKAS----------PYEVMLPSE   77 (296)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTS----------SSSSCCCCH
T ss_pred             ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCC----------CCCCCCCCH
Confidence            47999999999976    589999999        68999999999999999986532110          001111111


Q ss_pred             CCchHHHHhhhhccCCCCCeEEEEeCC--CCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCC
Q 030946           88 EENPEFLQTGVESQLDKDAKIIVACAT--GGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~iV~yc~~--g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~  165 (168)
                         .+|.+.....+++++++||+||.+  |.             ..+.++++.|+.+||++|++|+||+.+|.++|+|++
T Consensus        78 ---~~~~~~l~~lgi~~~~~vVvyc~~~~g~-------------~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~  141 (296)
T 1rhs_A           78 ---AGFADYVGSLGISNDTHVVVYDGDDLGS-------------FYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVT  141 (296)
T ss_dssp             ---HHHHHHHHHTTCCTTCEEEEECCCSSSC-------------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCB
T ss_pred             ---HHHHHHHHHcCCCCCCeEEEEcCCCCCc-------------chHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccc
Confidence               222222223568899999999998  65             148899999999999999999999999999999998


Q ss_pred             CC
Q 030946          166 SE  167 (168)
Q Consensus       166 ~~  167 (168)
                      ++
T Consensus       142 ~~  143 (296)
T 1rhs_A          142 SE  143 (296)
T ss_dssp             CS
T ss_pred             cC
Confidence            65

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.86  E-value=2.2e-22  Score=160.61  Aligned_cols=121  Identities=20%  Similarity=0.274  Sum_probs=94.1

Q ss_pred             cceecHHHHHHHhhcCCeEEEecC-ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR-~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      ...|+++++.+++++++.+||||| ++.+|..||||||+|+|+.......            ..+.+...+.+.+++.  
T Consensus         7 ~~~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~------------~~~~~~~~~~~~~~~~--   72 (285)
T 1uar_A            7 EVLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDP------------VVRDFISEEEFAKLME--   72 (285)
T ss_dssp             GGEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCS------------SSSSBCCHHHHHHHHH--
T ss_pred             CceEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCC------------cccCCCCHHHHHHHHH--
Confidence            457999999999987789999999 7899999999999999997533210            0111111111222222  


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                       ..+++++++||+||.+|.             .+|.++++.|+.+||++|++|+||+.+|.++|+|++.+
T Consensus        73 -~~gi~~~~~ivvyc~~g~-------------~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~  128 (285)
T 1uar_A           73 -RLGISNDTTVVLYGDKNN-------------WWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  128 (285)
T ss_dssp             -HTTCCTTCEEEEECHHHH-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             -HcCCCCCCeEEEECCCCC-------------ccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCC
Confidence             245789999999999875             26889999999999999999999999999999998764

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.86  E-value=4.7e-22  Score=146.68  Aligned_cols=109  Identities=17%  Similarity=0.315  Sum_probs=87.4

Q ss_pred             cccceecHHHHHHHhhc------CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           17 LQVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~------~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ..+..|+++++.+++++      ++.+|||||++.||..||||||+|+|+..+..++..                     
T Consensus        20 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~~~~~~~~---------------------   78 (161)
T 1c25_A           20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDFLL---------------------   78 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHTT---------------------
T ss_pred             CCcceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChhHHHHHHHh---------------------
Confidence            45778999999999976      378999999999999999999999999876542200                     


Q ss_pred             hHHHHhhhhccCCCCCeE--EEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHH----------cCccceeEccccHHHH
Q 030946           91 PEFLQTGVESQLDKDAKI--IVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKW  157 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i--V~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~----------~G~~~v~~l~GG~~~w  157 (168)
                           . .....+++++|  |+||. +|.              ||..++..|++          .||++|++|.||+.+|
T Consensus        79 -----~-~~~~~~~~~~ivvv~yC~~sg~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W  138 (161)
T 1c25_A           79 -----K-KPIVPTDGKRVIVVFHCEFSSE--------------RGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEF  138 (161)
T ss_dssp             -----T-SCCCCCTTSEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHH
T ss_pred             -----h-hhhccCCCCCeEEEEEcCCCCc--------------chHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHH
Confidence                 0 00112467775  68899 776              99999999986          4999999999999999


Q ss_pred             HhcCCCCCC
Q 030946          158 FKEELPEVS  166 (168)
Q Consensus       158 ~~~g~p~~~  166 (168)
                      .+++.|+..
T Consensus       139 ~~~~~~~~~  147 (161)
T 1c25_A          139 FMKCQSYCE  147 (161)
T ss_dssp             HHHHGGGEE
T ss_pred             HHHcccccC
Confidence            999877654

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.86  E-value=3.2e-22  Score=143.64  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=82.0

Q ss_pred             ceecHHHHHH--------HhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCch
Q 030946           20 RSVEAKEALR--------LQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP   91 (168)
Q Consensus        20 ~~i~~~~l~~--------~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (168)
                      +.|+++++.+        .+++++.+|||||++.||..||||||+|+|+..+...+..   .           .+...++
T Consensus         1 k~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~---~-----------~~~~~~~   66 (142)
T 2ouc_A            1 KIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRL---Q-----------QGKITVL   66 (142)
T ss_dssp             CEECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHH---H-----------TTSSCHH
T ss_pred             CccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHh---h-----------cCCcchh
Confidence            3689999999        5555579999999999999999999999999876542110   0           0011112


Q ss_pred             HHHHhh----hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           92 EFLQTG----VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        92 ~~~~~~----~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      .++...    ...+. ++++||+||.+|...+.   +  ....++..++..|...|| +|++|+||+.+|.++|.++..
T Consensus        67 ~~~~~~~~~~~~~~~-~~~~ivvyc~~g~~~~~---~--~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~~  138 (142)
T 2ouc_A           67 DLISCREGKDSFKRI-FSKEIIVYDENTNEPSR---V--MPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLCD  138 (142)
T ss_dssp             HHHHTTSCTTHHHHH-HHSCEEEECSSCCCGGG---C--CTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGEE
T ss_pred             hhCCChhhhHHHhcc-CCCcEEEEECCCCchhh---c--CcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhhc
Confidence            222110    00011 36899999999872100   0  000124678888999999 999999999999999988754

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.86  E-value=9.2e-22  Score=160.06  Aligned_cols=129  Identities=22%  Similarity=0.327  Sum_probs=101.1

Q ss_pred             hhhhHhhhhhhhhcc----------------cceecHHHHHHHhhcCCeEEEecCChhhhhh----------------cC
Q 030946            4 LSLWIKSVEVFYLLQ----------------VRSVEAKEALRLQKENNFVILDVRPEAEFKE----------------AH   51 (168)
Q Consensus         4 ~~~~~~~~~~~~~~~----------------~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~----------------gh   51 (168)
                      +..|..++.++....                ...++++++.++++++  +|||||++.||..                ||
T Consensus       147 ~~~W~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~i~~~el~~~l~~~--~liDvR~~~e~~~~~~~~~~~~~~~~~~~Gh  224 (318)
T 3hzu_A          147 RDLWLAERRETTLDVPTKTCTGYPVVQRNDAPIRAFRDDVLAILGAQ--PLIDVRSPEEYTGKRTHMPDYPEEGALRAGH  224 (318)
T ss_dssp             HHHHHHTTCCCBCCCCCCCCCCCCCCCCCCTTTBCCHHHHHHHTTTS--CEEECSCHHHHHTSCSSCTTSCSCSCSSCSB
T ss_pred             HHHHhhcCCCcccCCCCCCCCccccccCCCccccccHHHHHHhhcCC--eEEecCCHHHhcccccCccccccccCCcCcC
Confidence            567888876654321                1247899999999763  9999999999998                99


Q ss_pred             CCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccch
Q 030946           52 PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR  131 (168)
Q Consensus        52 IpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~r  131 (168)
                      ||||+|+|+..+....                  +.....+.+++ ...+++++++||+||++|.              |
T Consensus       225 IpGA~niP~~~~~~~~------------------g~~~~~~~l~~-~~~~l~~~~~ivvyC~sG~--------------r  271 (318)
T 3hzu_A          225 IPTAVHIPWGKAADES------------------GRFRSREELER-LYDFINPDDQTVVYCRIGE--------------R  271 (318)
T ss_dssp             CTTCEECCGGGGBCTT------------------SCBCCHHHHHH-HTTTCCTTCCCEEECSSSH--------------H
T ss_pred             CCCeeecCHHHhcCCC------------------CcCCCHHHHHH-HhcCCCCCCcEEEEcCChH--------------H
Confidence            9999999998764321                  11122233333 2356889999999999997              9


Q ss_pred             HHHHHHHHHH-cCccceeEccccHHHHHh-cCCCCCCC
Q 030946          132 SLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EELPEVSE  167 (168)
Q Consensus       132 s~~a~~~L~~-~G~~~v~~l~GG~~~w~~-~g~p~~~~  167 (168)
                      |..++..|.+ +||++|++|+||+.+|.. .|+|++.+
T Consensus       272 s~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~g  309 (318)
T 3hzu_A          272 SSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVAG  309 (318)
T ss_dssp             HHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCBCS
T ss_pred             HHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccC
Confidence            9999999997 999999999999999994 79999876

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.85  E-value=1.7e-21  Score=150.16  Aligned_cols=109  Identities=19%  Similarity=0.318  Sum_probs=87.9

Q ss_pred             cccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           17 LQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ..+..|+++++.++++++      +.+|||||++.||..||||||+|+|+..+...+.                      
T Consensus        41 ~~~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~~l~~~~~----------------------   98 (211)
T 1qb0_A           41 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFL----------------------   98 (211)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHH----------------------
T ss_pred             CCCCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCchHHHHHhh----------------------
Confidence            456889999999999763      7899999999999999999999999987654220                      


Q ss_pred             hHHHHhhhhccCCCCCeE--EEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHH----------cCccceeEccccHHHH
Q 030946           91 PEFLQTGVESQLDKDAKI--IVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKW  157 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~i--V~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~----------~G~~~v~~l~GG~~~w  157 (168)
                          .........++++|  |+||. +|.              ||..+++.|+.          +||++|++|.||+.+|
T Consensus        99 ----~~~~~l~~~~d~~ivvVvyC~~sG~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W  160 (211)
T 1qb0_A           99 ----LKSPIAPCSLDKRVILIFHCEFSSE--------------RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF  160 (211)
T ss_dssp             ----HTTTCCCSSTTSEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHH
T ss_pred             ----hhhhhccccCCCCeEEEEECCCCCc--------------cHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHH
Confidence                00001122367787  88999 887              99999999986          6999999999999999


Q ss_pred             HhcCCCCC
Q 030946          158 FKEELPEV  165 (168)
Q Consensus       158 ~~~g~p~~  165 (168)
                      .++|.|+.
T Consensus       161 ~~~g~~~~  168 (211)
T 1qb0_A          161 FPQHPNFC  168 (211)
T ss_dssp             TTTCGGGE
T ss_pred             HHHCcccc
Confidence            99988763

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.85  E-value=1.2e-21  Score=146.51  Aligned_cols=109  Identities=18%  Similarity=0.294  Sum_probs=84.1

Q ss_pred             cccceecHHHHHHHhhc------CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           17 LQVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~------~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ..+..|+++++.+++++      ++.+|||||++.||..||||||+|+|+..+...+..                     
T Consensus        21 ~~~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~~~~~~---------------------   79 (175)
T 2a2k_A           21 QDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLL---------------------   79 (175)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHH---------------------
T ss_pred             CCCceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChhHHHHHhhh---------------------
Confidence            45788999999999976      378999999999999999999999999876542100                     


Q ss_pred             hHHHHhhhhccCCCCCeEEE--EeC-CCCCCCCCCCCCCCccchHHHHHHHHHH----------cCccceeEccccHHHH
Q 030946           91 PEFLQTGVESQLDKDAKIIV--ACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKW  157 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~--yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~----------~G~~~v~~l~GG~~~w  157 (168)
                           ........++++||+  ||+ +|.              ||..++..|++          +||++|++|.||+.+|
T Consensus        80 -----~~~~~~~~~~~~ivvv~yC~~~g~--------------rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W  140 (175)
T 2a2k_A           80 -----KSPIAPCSLDKRVILIFHSEFSSE--------------RGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEF  140 (175)
T ss_dssp             -----SSCCCC----CEEEEEEECSSSSS--------------HHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHH
T ss_pred             -----hhhhccccCCCCeEEEEECCCCCC--------------ccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHH
Confidence                 000011236778744  688 776              99999999986          4999999999999999


Q ss_pred             HhcCCCCC
Q 030946          158 FKEELPEV  165 (168)
Q Consensus       158 ~~~g~p~~  165 (168)
                      .+++.|+.
T Consensus       141 ~~~~~~~~  148 (175)
T 2a2k_A          141 FPQHPNFC  148 (175)
T ss_dssp             TTTCGGGE
T ss_pred             HHHCcccc
Confidence            99988763

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.85  E-value=7.4e-22  Score=144.37  Aligned_cols=116  Identities=18%  Similarity=0.242  Sum_probs=83.2

Q ss_pred             ceecHHHHHHHhhc--CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH-Hh
Q 030946           20 RSVEAKEALRLQKE--NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL-QT   96 (168)
Q Consensus        20 ~~i~~~~l~~~l~~--~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   96 (168)
                      ..|+++++.+++++  ++.+|||||++.||..||||||+|+|+..+..+...               .+......++ ..
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~---------------~~~~~~~~ll~~~   68 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQ---------------QDKVLITELIQHS   68 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHH---------------TTSSCHHHHHHHS
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhh---------------cCCcCHHHhcCch
Confidence            57899999999973  479999999999999999999999999887432110               0000011111 00


Q ss_pred             -hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHH------HHHHHHc--CccceeEccccHHHHHhcCCCC
Q 030946           97 -GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIA------AYLLVLN--GYKNVYHLEGGLYKWFKEELPE  164 (168)
Q Consensus        97 -~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a------~~~L~~~--G~~~v~~l~GG~~~w~~~g~p~  164 (168)
                       ....+++++++||+||++|.              ++..+      ++.|+.+  ||++|++|+||+.+|.+.+.++
T Consensus        69 ~~~~~~~~~~~~iVvyc~~g~--------------~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~  131 (153)
T 2vsw_A           69 AKHKVDIDCSQKVVVYDQSSQ--------------DVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGL  131 (153)
T ss_dssp             CSSCCCCCTTSEEEEECSSCC--------------CGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGG
T ss_pred             hhhhhccCCCCeEEEEeCCCC--------------cccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhh
Confidence             00123578899999999987              55444      5777743  9999999999999999875544

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.84  E-value=6.1e-21  Score=164.92  Aligned_cols=106  Identities=28%  Similarity=0.312  Sum_probs=91.5

Q ss_pred             ccceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           18 QVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      .+..|+++++.++++++ +.+|||||++.||..||||||+|+|+..+....                           . 
T Consensus         5 ~~~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~~~~~~~---------------------------~-   56 (539)
T 1yt8_A            5 QIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEI---------------------------H-   56 (539)
T ss_dssp             -CEEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHH---------------------------H-
T ss_pred             cCcccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHHHHHHHH---------------------------H-
Confidence            46789999999999754 799999999999999999999999997653211                           1 


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                        ....+++++||+||.+|.              +|.++++.|+..||+||++|+||+.+|+++|+|++++
T Consensus        57 --~l~~~~~~~iVvyc~~g~--------------~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  111 (539)
T 1yt8_A           57 --ARVPRRDTPITVYDDGEG--------------LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRD  111 (539)
T ss_dssp             --HHSCCTTSCEEEECSSSS--------------HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCS
T ss_pred             --hhCCCCCCeEEEEECCCC--------------hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccC
Confidence              123357899999999987              9999999999999999999999999999999999764

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.84  E-value=3.4e-21  Score=153.14  Aligned_cols=107  Identities=22%  Similarity=0.340  Sum_probs=89.2

Q ss_pred             cccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      .....|+++++.+++++++.+|||||++.||..||||||+|+|+..+...                        ++++..
T Consensus       119 ~~~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~~------------------------~~~l~~  174 (265)
T 4f67_A          119 NAGTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFREF------------------------PDYVQR  174 (265)
T ss_dssp             CTTCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGGGH------------------------HHHHHH
T ss_pred             CCCceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHHhh------------------------HHHHHH
Confidence            34678999999999988899999999999999999999999999775321                        111111


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCC
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP  163 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p  163 (168)
                        ....+++++||+||.+|.              ||..+++.|+..||+||++|.||+.+|.+...+
T Consensus       175 --~l~~~kdk~IVvyC~~G~--------------RS~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~~~  225 (265)
T 4f67_A          175 --NLIDKKDKKIAMFCTGGI--------------RCEKTTAYMKELGFEHVYQLHDGILNYLESIPE  225 (265)
T ss_dssp             --HTGGGTTSCEEEECSSSH--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHHSCT
T ss_pred             --hhhhCCCCeEEEEeCCCh--------------HHHHHHHHHHHcCCCCEEEecCHHHHHHHhcCc
Confidence              123378899999999987              999999999999999999999999999987543

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.84  E-value=4.8e-21  Score=140.46  Aligned_cols=108  Identities=18%  Similarity=0.206  Sum_probs=82.3

Q ss_pred             ccceecHHHHHHHhhcC----CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946           18 QVRSVEAKEALRLQKEN----NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF   93 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~----~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
                      .+..|+++++.++++++    +.+|||||++ ||..||||||+|+|+..+....                      ++++
T Consensus         3 ~~~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~~~~----------------------~~~l   59 (152)
T 2j6p_A            3 NYTYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCTEEM----------------------YEKL   59 (152)
T ss_dssp             CCEEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCCHHH----------------------HHHH
T ss_pred             CcCccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhhHHH----------------------HHHH
Confidence            46789999999999763    7999999999 9999999999999998754311                      0111


Q ss_pred             HHhhhhccCCCCCeEEEEe-CCCCCCCCCCCCCCCccchHHHHH----HHHHHcCc--cceeEccccHHHHHhcCCCCC
Q 030946           94 LQTGVESQLDKDAKIIVAC-ATGGTMKPSQNLPEGQQSRSLIAA----YLLVLNGY--KNVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus        94 ~~~~~~~~~~~~~~iV~yc-~~g~~~~~~~~~~~~~~~rs~~a~----~~L~~~G~--~~v~~l~GG~~~w~~~g~p~~  165 (168)
                      .+.  ... ...+.||+|| .+|.              |+..++    ..|...||  .+|++|.||+.+|.++|.++.
T Consensus        60 ~~~--l~~-~~~~~vV~yC~~sg~--------------rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~  121 (152)
T 2j6p_A           60 AKT--LFE-EKKELAVFHCAQSLV--------------RAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVR  121 (152)
T ss_dssp             HHH--HHH-TTCCEEEEECSSSSS--------------HHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTC
T ss_pred             HHH--hcc-cCCCEEEEEcCCCCC--------------ccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCC
Confidence            111  000 2334678889 6776              888887    77888997  589999999999999988765

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.84  E-value=3.8e-21  Score=166.22  Aligned_cols=118  Identities=18%  Similarity=0.228  Sum_probs=100.8

Q ss_pred             hhhhHhhhhhhh----hcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhh
Q 030946            4 LSLWIKSVEVFY----LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA   79 (168)
Q Consensus         4 ~~~~~~~~~~~~----~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~   79 (168)
                      +..|..++.++.    ...+..|+++++.+++++++.+|||||++.||..||||||+|+|...+....            
T Consensus       357 ~~~w~~~g~p~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~l------------  424 (539)
T 1yt8_A          357 EADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQAL------------  424 (539)
T ss_dssp             GGGCCBCSSCCCCCCCCCCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHHH------------
T ss_pred             hHHHHHhhccccCCCCCCcCCccCHHHHHHHhcCCCeEEEEeCCHHHhhcCcCCCchhCCHHHHHHHH------------
Confidence            566766664332    2456789999999999887899999999999999999999999987664321            


Q ss_pred             hccccCCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946           80 FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                                          ..++++++||+||.+|.              ||..++..|+..||++|++|+||+.+|.+
T Consensus       425 --------------------~~l~~~~~ivv~C~sG~--------------rs~~aa~~L~~~G~~~v~~l~GG~~~W~~  470 (539)
T 1yt8_A          425 --------------------ERLGTAERYVLTCGSSL--------------LARFAVAEVQALSGKPVFLLDGGTSAWVA  470 (539)
T ss_dssp             --------------------HHHCCCSEEEEECSSSH--------------HHHHHHHHHHHHHCSCEEEETTHHHHHHH
T ss_pred             --------------------HhCCCCCeEEEEeCCCh--------------HHHHHHHHHHHcCCCCEEEeCCcHHHHHh
Confidence                                23578899999999997              99999999999999999999999999999


Q ss_pred             cCCCCCCC
Q 030946          160 EELPEVSE  167 (168)
Q Consensus       160 ~g~p~~~~  167 (168)
                      +|+|++++
T Consensus       471 ~g~pv~~~  478 (539)
T 1yt8_A          471 AGLPTEDG  478 (539)
T ss_dssp             TTCCCBCS
T ss_pred             CCCCcccC
Confidence            99999875

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.83  E-value=6.1e-21  Score=142.47  Aligned_cols=116  Identities=22%  Similarity=0.286  Sum_probs=84.9

Q ss_pred             hcccceecHHHHHHHhhcC-------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCC
Q 030946           16 LLQVRSVEAKEALRLQKEN-------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE   88 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~-------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   88 (168)
                      ...++.|+++++.++++++       +.+|||||+ .||..||||||+|+|+..+......                   
T Consensus        27 ~~~~~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~~~~~-------------------   86 (169)
T 3f4a_A           27 ITNVKYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQDPEY-------------------   86 (169)
T ss_dssp             CCSEEEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHHCHHH-------------------
T ss_pred             cCCCcEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhccccc-------------------
Confidence            3567899999999999754       489999999 9999999999999999887542100                   


Q ss_pred             CchHHHHhhhhcc--CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH----cC--ccceeEccccHHHHHhc
Q 030946           89 ENPEFLQTGVESQ--LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----NG--YKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        89 ~~~~~~~~~~~~~--~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~----~G--~~~v~~l~GG~~~w~~~  160 (168)
                       .+++.+......  ...+++|||||.+|+             .|+..++..|.+    .|  +.+|++|.||+.+|.++
T Consensus        87 -l~~l~~~~~~~~~~~~~~~~IVvyC~sG~-------------~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~  152 (169)
T 3f4a_A           87 -LRELKHRLLEKQADGRGALNVIFHCMLSQ-------------QRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSV  152 (169)
T ss_dssp             -HHHHHHHHHHHHHTSSSCEEEEEECSSSS-------------SHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHH
T ss_pred             -HHHHHHHHHhhcccccCCCeEEEEeCCCC-------------CcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHH
Confidence             011111100011  122479999999974             288888877654    36  57899999999999999


Q ss_pred             CCCCC
Q 030946          161 ELPEV  165 (168)
Q Consensus       161 g~p~~  165 (168)
                      +.|.+
T Consensus       153 ~~~~~  157 (169)
T 3f4a_A          153 YGDDE  157 (169)
T ss_dssp             HTTCT
T ss_pred             cCCcc
Confidence            87765

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.83  E-value=8.7e-21  Score=147.33  Aligned_cols=99  Identities=28%  Similarity=0.466  Sum_probs=84.0

Q ss_pred             eecHHHHHHHhhcCCeEEEecCChhhhhh----------cCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           21 SVEAKEALRLQKENNFVILDVRPEAEFKE----------AHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        21 ~i~~~~l~~~l~~~~~~liDvR~~~e~~~----------ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      .++++++.+     +.+|||+|++.||..          ||||||+|+|+..+....                       
T Consensus       122 ~i~~~e~~~-----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-----------------------  173 (230)
T 2eg4_A          122 LLTADEAAR-----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-----------------------  173 (230)
T ss_dssp             BCCHHHHHT-----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-----------------------
T ss_pred             eeCHHHHhh-----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-----------------------
Confidence            578888766     688999999999999          999999999998764320                       


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                       +.++   ..+++++++||+||++|.              ||..++..|+.+| .+|++|+||+.+|.++|+|+++
T Consensus       174 -e~~~---~~~~~~~~~iv~~C~~G~--------------rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          174 -GLLE---RLGLQPGQEVGVYCHSGA--------------RSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             -THHH---HHTCCTTCEEEEECSSSH--------------HHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             -HHHH---hcCCCCCCCEEEEcCChH--------------HHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence             0111   135788999999999997              9999999999999 8999999999999999999873

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=146.47  Aligned_cols=105  Identities=24%  Similarity=0.374  Sum_probs=81.1

Q ss_pred             cccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           17 LQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ..++.|+++++.++++.+      +.+|||||.+.||..||||||+|||+.+...+.                       
T Consensus        54 ~~~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~~~l~~~-----------------------  110 (216)
T 3op3_A           54 QDLKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQEELFNF-----------------------  110 (216)
T ss_dssp             SSSEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSHHHHHHH-----------------------
T ss_pred             CCCCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChHHHHHHH-----------------------
Confidence            347789999999999865      689999999999999999999999997633211                       


Q ss_pred             hHHHHhhhhccCCCCC--eEEEEeC-CCCCCCCCCCCCCCccchHHHHHHHHHHc----------CccceeEccccHHHH
Q 030946           91 PEFLQTGVESQLDKDA--KIIVACA-TGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKW  157 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~--~iV~yc~-~g~~~~~~~~~~~~~~~rs~~a~~~L~~~----------G~~~v~~l~GG~~~w  157 (168)
                        +.+. ......+++  .||+||. +|.              ||..++..|+..          ||++|++|.||+.+|
T Consensus       111 --l~~~-~~~~~~~~k~~~VVvyC~~SG~--------------Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW  173 (216)
T 3op3_A          111 --FLKK-PIVPLDTQKRIIIVFHCEFSSE--------------RGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDF  173 (216)
T ss_dssp             --HTSS-CCCCSSTTSEEEEEEECCC--C--------------CHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHH
T ss_pred             --Hhhc-cccccccCCCCEEEEEeCCCCh--------------HHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHH
Confidence              0000 001122344  4999999 887              999999999987          899999999999999


Q ss_pred             HhcC
Q 030946          158 FKEE  161 (168)
Q Consensus       158 ~~~g  161 (168)
                      .++.
T Consensus       174 ~~~~  177 (216)
T 3op3_A          174 FPEY  177 (216)
T ss_dssp             TTTC
T ss_pred             HHhC
Confidence            8864

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.83  E-value=7.5e-21  Score=159.91  Aligned_cols=123  Identities=17%  Similarity=0.248  Sum_probs=91.2

Q ss_pred             eecHHHHHHHhhcCCeEEEecCChhhh-----------hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           21 SVEAKEALRLQKENNFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        21 ~i~~~~l~~~l~~~~~~liDvR~~~e~-----------~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      .|+++++.++++.++.+|||||++.||           ..||||||+|+|+......+...       .+..+.+...++
T Consensus       273 ~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~-------~~~~~~~~~~~~  345 (423)
T 2wlr_A          273 MLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDF-------HNPDGTMRSADD  345 (423)
T ss_dssp             EECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGG-------BCTTSSBCCHHH
T ss_pred             eecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHH-------cCCCCcCCCHHH
Confidence            489999999988778999999999999           79999999999986210000000       000011111111


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh-cCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVSE  167 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~-~g~p~~~~  167 (168)
                      +.+.+   ...+++++++||+||.+|.              ||..++..|+.+||+||++|+||+.+|.. .++|++.+
T Consensus       346 l~~~~---~~~~~~~~~~ivvyC~sG~--------------rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~  407 (423)
T 2wlr_A          346 ITAMW---KAWNIKPEQQVSFYCGTGW--------------RASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATG  407 (423)
T ss_dssp             HHHHH---HTTTCCTTSEEEEECSSSH--------------HHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEECS
T ss_pred             HHHHH---HHcCCCCCCcEEEECCcHH--------------HHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCcccC
Confidence            12222   1246788999999999997              99999999999999999999999999998 89998865

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.82  E-value=7e-21  Score=158.07  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=91.2

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCC--------hhhhhhcCCCCcEEechhh-HHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRP--------EAEFKEAHPPGAINVQIYR-LIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~--------~~e~~~ghIpgAi~ip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ...|+++++.+++++  .+|||||.        +.||..||||||+|+|+.. +.....        .....+.+...  
T Consensus        13 ~~~Is~~el~~~l~~--~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~--------~~~~~~~lp~~--   80 (373)
T 1okg_A           13 KVFLDPSEVADHLAE--YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVP--------TSTARHPLPPX--   80 (373)
T ss_dssp             CCEECHHHHTTCGGG--SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCT--------TCCCSSCCCCH--
T ss_pred             CcEEcHHHHHHHcCC--cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccc--------cCCccccCCCH--
Confidence            578999999998876  89999998        6999999999999999975 422100        00011112111  


Q ss_pred             chHHHHhhhhccCCCCCeEEEEe-CCCCCCCCCCCCCCCccchHH-HHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVAC-ATGGTMKPSQNLPEGQQSRSL-IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc-~~g~~~~~~~~~~~~~~~rs~-~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                       .+|.+.....+++++++||+|| .+|.              ++. ++++.|+.+|| +|++|+||+.+|+++|+|++++
T Consensus        81 -~~f~~~l~~~gi~~d~~VVvYc~~~G~--------------rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~  144 (373)
T 1okg_A           81 -AEFIDWCMANGMAGELPVLCYDDECGA--------------MGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESG  144 (373)
T ss_dssp             -HHHHHHHHHTTCSSSSCEEEECSSTTT--------------TTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECS
T ss_pred             -HHHHHHHHHcCCCCCCeEEEEeCCCCc--------------hHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccC
Confidence             2333222336788999999999 5565              775 99999999999 9999999999999999998764

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.82  E-value=1.7e-20  Score=157.69  Aligned_cols=118  Identities=19%  Similarity=0.235  Sum_probs=94.4

Q ss_pred             ceecHHHHHHHhh--------cCCeEEEecC--ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           20 RSVEAKEALRLQK--------ENNFVILDVR--PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        20 ~~i~~~~l~~~l~--------~~~~~liDvR--~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ..++++++.++++        .++.+|||+|  ++.||..||||||+|+|+..+....             .+.+...++
T Consensus       124 ~~i~~~~l~~~~~~~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~-------------~~~~~~~~~  190 (423)
T 2wlr_A          124 QLVYPQWLHDLQQGKEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEP-------------LWNKVSDEQ  190 (423)
T ss_dssp             GEECHHHHHHHHTTCCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETT-------------TTEECCHHH
T ss_pred             cccCHHHHHHHhhccccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCC-------------CCCCCCHHH
Confidence            5789999998886        3478999999  9999999999999999998764310             011222222


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      +.+.+.   ..+++++++||+||++|.              +|..+++.|+.+||++|++|+||+.+|.+.|+|++++
T Consensus       191 l~~~~~---~~gi~~~~~ivvyC~~G~--------------~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g  251 (423)
T 2wlr_A          191 LKAMLA---KHGIRHDTTVILYGRDVY--------------AAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERG  251 (423)
T ss_dssp             HHHHHH---HTTCCTTSEEEEECSSHH--------------HHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCS
T ss_pred             HHHHHH---HcCCCCCCeEEEECCCch--------------HHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccC
Confidence            223322   256789999999999886              9999999999999999999999999999999999874

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.81  E-value=7.1e-21  Score=139.08  Aligned_cols=126  Identities=17%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             hcccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946           16 LLQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF   93 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
                      ...+..|+++++.++++++  +.+|||||++.||..||||||+|+|+..+..+.....     ...+.+.++.    ++.
T Consensus        12 ~~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~-----~~~~~~~l~~----~~~   82 (154)
T 1hzm_A           12 SEMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKG-----NLPVRALFTR----GED   82 (154)
T ss_dssp             SCCSSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCS-----CCCTTTTSTT----SHH
T ss_pred             cccccccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcC-----cccHHHhCCC----HHH
Confidence            4457789999999999765  7999999999999999999999999987642100000     0000011110    011


Q ss_pred             HHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc---CccceeEccccHHHHHhc
Q 030946           94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN---GYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        94 ~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~---G~~~v~~l~GG~~~w~~~  160 (168)
                      .+  ...++.++++||+||.+|..+...    .+   .+..+++.|+.+   ||+ |++|+||+.+|.+.
T Consensus        83 ~~--~~~~~~~~~~iVvyc~~g~~~~~~----~~---aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           83 RD--RFTRRCGTDTVVLYDESSSDWNEN----TG---GESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             HH--HHHHSTTSSCEEECCCSSSSSCSC----SS---CCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             HH--HHhccCCCCeEEEEeCCCCccccc----cc---cchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            11  123467889999999998721000    00   023446666655   998 99999999999876

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=133.36  Aligned_cols=129  Identities=18%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             hcccceecHHHHHHHhh--------cCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCC
Q 030946           16 LLQVRSVEAKEALRLQK--------ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT   87 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~--------~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~   87 (168)
                      ...+..|+++++.+++.        +++.+|||||++.||..||||||+|+|+..+.....-    ......+...+...
T Consensus         7 ~~~~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~----~~~~~~~~~~~~~~   82 (158)
T 3tg1_B            7 LASIKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRL----QQGKITVLDLISCR   82 (158)
T ss_dssp             ----CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHH----TTSSCCHHHHTCCC
T ss_pred             CCCCcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhh----hcCcccHHhhcCCH
Confidence            35578999999999997        3478999999999999999999999999887521100    00000000000000


Q ss_pred             CCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           88 EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      .....       ....++++||+||.+|..+.-     .....++..++..|...|| +|++|.|||.+|.++.
T Consensus        83 ~~~~~-------~~~~~~~~IVvyc~~g~~~~~-----~~~~~~s~~a~~~L~~~G~-~v~~L~GG~~~W~~~~  143 (158)
T 3tg1_B           83 EGKDS-------FKRIFSKEIIVYDENTNEPSR-----VMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNH  143 (158)
T ss_dssp             CSSCS-------STTTTTSCEEEECSCCSCTTS-----CCSSSHHHHHHHHHHTTTC-CEEEETTHHHHHTSSC
T ss_pred             HHHHH-------HhccCCCeEEEEECCCCcccc-----cCcchHHHHHHHHHHhCCC-cEEEeCCcHHHHHHHh
Confidence            00000       011257899999999952110     0001268999999999999 6999999999998763

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.3e-19  Score=148.08  Aligned_cols=123  Identities=18%  Similarity=0.211  Sum_probs=96.4

Q ss_pred             ccceecHHHHHHHhhcC---CeEEEecC--------C-hhhh-hhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhcccc
Q 030946           18 QVRSVEAKEALRLQKEN---NFVILDVR--------P-EAEF-KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF   84 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~---~~~liDvR--------~-~~e~-~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      .++.|||++|.++++++   ++++||++        + ..|| +++|||||++++++.+.+..          ..+.+++
T Consensus        26 ~~~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~----------~~~ph~L   95 (327)
T 3utn_X           26 LFDLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKK----------SPYPHMF   95 (327)
T ss_dssp             SCEEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTT----------SSSTTCC
T ss_pred             cccccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCC----------CCCCCCC
Confidence            34579999999999754   58999986        2 4566 68999999999987653321          1234455


Q ss_pred             CCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCC
Q 030946           85 SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPE  164 (168)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~  164 (168)
                      ++.+.+.+.+.   ..++.++++||+|++.+.             ..|.+++|+|+.+|+++|++|+|| .+|.++|+|+
T Consensus        96 P~~~~f~~~l~---~lGI~~d~~VVvYD~~~~-------------~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~  158 (327)
T 3utn_X           96 PTKKVFDDAMS---NLGVQKDDILVVYDRVGN-------------FSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPL  158 (327)
T ss_dssp             CCHHHHHHHHH---HTTCCTTCEEEEECSSSS-------------SSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCC
T ss_pred             cCHHHHHHHHH---HcCCCCCCEEEEEeCCCC-------------cHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCc
Confidence            44444555554   489999999999999887             378999999999999999999876 8999999999


Q ss_pred             CCC
Q 030946          165 VSE  167 (168)
Q Consensus       165 ~~~  167 (168)
                      +++
T Consensus       159 ~~~  161 (327)
T 3utn_X          159 DSS  161 (327)
T ss_dssp             BCC
T ss_pred             ccC
Confidence            865

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.78  E-value=2.3e-19  Score=154.71  Aligned_cols=98  Identities=27%  Similarity=0.339  Sum_probs=86.0

Q ss_pred             hhcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      ....++.|+++++.++  .++.+|||||++.||..+|||||+|+|+..+..                             
T Consensus       468 ~~~~~~~i~~~~~~~~--~~~~~~iDvR~~~e~~~~~i~ga~~ip~~~l~~-----------------------------  516 (565)
T 3ntd_A          468 IKGDATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRD-----------------------------  516 (565)
T ss_dssp             HHTSCCEECTTTTTSC--CTTEEEEECSCGGGGGGCCCTTCEECCGGGTTT-----------------------------
T ss_pred             cccccceeeHHHHHhC--CCCcEEEEeCCHHHHhcCCCCCcEECCHHHHHH-----------------------------
Confidence            3566788999998877  458999999999999999999999999977643                             


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                         ....++++++||+||.+|.              ||..+++.|++.|| +|++|.||+.+|+++|
T Consensus       517 ---~~~~~~~~~~iv~~c~~g~--------------rs~~a~~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          517 ---RMHELPKDKEIIIFSQVGL--------------RGNVAYRQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             ---SGGGSCTTSEEEEECSSSH--------------HHHHHHHHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             ---HHhhcCCcCeEEEEeCCch--------------HHHHHHHHHHHcCC-CEEEEcChHHHHHhCc
Confidence               2244788999999999987              99999999999999 9999999999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.78  E-value=5.7e-19  Score=153.33  Aligned_cols=100  Identities=27%  Similarity=0.368  Sum_probs=88.2

Q ss_pred             hhhcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946           14 FYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF   93 (168)
Q Consensus        14 ~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
                      .....+..|+++++.+++++ +.+|||||++.||..||||||+|+|+..+..                            
T Consensus       483 ~~~~~~~~i~~~~~~~~~~~-~~~~iDvR~~~e~~~ghi~ga~~ip~~~l~~----------------------------  533 (588)
T 3ics_A          483 IVDGFVDTVQWHEIDRIVEN-GGYLIDVREPNELKQGMIKGSINIPLDELRD----------------------------  533 (588)
T ss_dssp             HHTTSCCEECTTTHHHHHHT-TCEEEECSCGGGGGGCBCTTEEECCHHHHTT----------------------------
T ss_pred             ccccccceecHHHHHHHhcC-CCEEEEcCCHHHHhcCCCCCCEECCHHHHHH----------------------------
Confidence            34677889999999999975 6899999999999999999999999977643                            


Q ss_pred             HHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        94 ~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                          ....++++++||+||.+|.              ||..+++.|++.||+ |++|.||+.+|++..
T Consensus       534 ----~~~~l~~~~~iv~~C~~g~--------------rs~~a~~~l~~~G~~-v~~l~GG~~~w~~~~  582 (588)
T 3ics_A          534 ----RLEEVPVDKDIYITCQLGM--------------RGYVAARMLMEKGYK-VKNVDGGFKLYGTVL  582 (588)
T ss_dssp             ----CGGGSCSSSCEEEECSSSH--------------HHHHHHHHHHHTTCC-EEEETTHHHHHHHHC
T ss_pred             ----HHhhCCCCCeEEEECCCCc--------------HHHHHHHHHHHcCCc-EEEEcchHHHHHhhh
Confidence                2244788999999999987              999999999999998 999999999998764

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.77  E-value=1.5e-18  Score=127.88  Aligned_cols=125  Identities=14%  Similarity=0.119  Sum_probs=78.1

Q ss_pred             hhcccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchH
Q 030946           15 YLLQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPE   92 (168)
Q Consensus        15 ~~~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (168)
                      .......|+++++.++++.+  +.+|||||++.||..||||||+|||+..+........+...              +++
T Consensus        15 ~~~~~~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~l~~~~~~~~l~~~--------------lp~   80 (157)
T 2gwf_A           15 VPRGSGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH--------------LPD   80 (157)
T ss_dssp             ----CCEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHT--------------SCH
T ss_pred             ccCCCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHHcCCCCcHHHHHHH--------------cCH
Confidence            35567789999999999876  89999999999999999999999998765321111111100              111


Q ss_pred             HHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHH----Hc----Ccc-ceeEccccHHHHHhcCCC
Q 030946           93 FLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV----LN----GYK-NVYHLEGGLYKWFKEELP  163 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~----~~----G~~-~v~~l~GG~~~w~~~g~p  163 (168)
                      .... ......+.+.||+||.++...+          .++..+++.|.    +.    |+. +|++|.|||.+|.+. +|
T Consensus        81 ~~~~-l~~~~~~~~~VVvy~~~~~~~~----------~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p  148 (157)
T 2gwf_A           81 DSKD-TWKKRGNVEYVVLLDWFSSAKD----------LQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YP  148 (157)
T ss_dssp             HHHH-HHHTTTTSSEEEEECSSCCGGG----------CCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CG
T ss_pred             HHHH-HHHhcCCCCEEEEEcCCCCccc----------cCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-Ch
Confidence            1000 1112234456999998875100          02334555554    32    454 399999999999985 66


Q ss_pred             CC
Q 030946          164 EV  165 (168)
Q Consensus       164 ~~  165 (168)
                      ..
T Consensus       149 ~~  150 (157)
T 2gwf_A          149 QY  150 (157)
T ss_dssp             GG
T ss_pred             hh
Confidence            54

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.77  E-value=6.3e-19  Score=129.70  Aligned_cols=124  Identities=14%  Similarity=0.156  Sum_probs=80.0

Q ss_pred             cccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           17 LQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      .....|+++++.++++.+  +.+|||||++.||..||||||+|||+..+........+..        .+  .....+.+
T Consensus        12 ~~~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~~~~~~~~~~l~~--------~l--p~~~~~~~   81 (157)
T 1whb_A           12 KEKGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEA--------HL--PDDSKDTW   81 (157)
T ss_dssp             CCCSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSSCCTTCCHHHHHH--------SC--CTTHHHHH
T ss_pred             ccCCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHHccCCCcHHHHHH--------HC--ChHHHHHH
Confidence            456789999999999866  7999999999999999999999999875532110011110        00  00111111


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH----c----Ccc-ceeEccccHHHHHhcCCCCC
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----N----GYK-NVYHLEGGLYKWFKEELPEV  165 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~----~----G~~-~v~~l~GG~~~w~~~g~p~~  165 (168)
                      .     ...+.+.||+||.++...+          .++..+++.|..    .    ||. +|++|.|||.+|.+. +|+.
T Consensus        82 ~-----~~~~~~~VVvy~~~~~~~~----------~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~  145 (157)
T 1whb_A           82 K-----KRGNVEYVVLLDWFSSAKD----------LQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQY  145 (157)
T ss_dssp             H-----GGGTSSEEEEECSSCCGGG----------CCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGG
T ss_pred             H-----hcCCCCEEEEECCCCCccc----------cccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-Chhh
Confidence            1     1224456999998875100          123456667662    2    454 399999999999985 6654


Q ss_pred             C
Q 030946          166 S  166 (168)
Q Consensus       166 ~  166 (168)
                      .
T Consensus       146 ~  146 (157)
T 1whb_A          146 T  146 (157)
T ss_dssp             B
T ss_pred             h
Confidence            3

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.71  E-value=3.3e-18  Score=141.95  Aligned_cols=104  Identities=20%  Similarity=0.237  Sum_probs=74.9

Q ss_pred             cCCeEEEecCChhhhh-----------hcCCCCcEEechhhHH--hhhhHHHHHHHhhhhhccc-cCCCCCchHHHHhhh
Q 030946           33 ENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLI--KEWTAWDIARRAAFAFFGI-FSGTEENPEFLQTGV   98 (168)
Q Consensus        33 ~~~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~l~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   98 (168)
                      .++.+|||||++.||.           .||||||+|+|+..+.  ...              +. +.+.+++.+.+.. .
T Consensus       172 ~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~--------------~~~~~~~~~l~~~~~~-~  236 (373)
T 1okg_A          172 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD--------------GKVLRSEEEIRHNIMT-V  236 (373)
T ss_dssp             CTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS--------------SCEECCHHHHHHHHHT-T
T ss_pred             ccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCC--------------CCccCCHHHHHHHHHh-h
Confidence            3478999999999999           9999999999998764  210              00 0111111222211 0


Q ss_pred             hccCCC---CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh-cCCCCC
Q 030946           99 ESQLDK---DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEV  165 (168)
Q Consensus        99 ~~~~~~---~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~-~g~p~~  165 (168)
                      ..++++   +++||+||++|.              ||..++..|..+||++|++|+||+.+|.. .++|++
T Consensus       237 ~~gi~~~~~d~~ivvyC~sG~--------------rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~  293 (373)
T 1okg_A          237 VQGAGDAADLSSFVFSCGSGV--------------TACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIM  293 (373)
T ss_dssp             CC-----CCCTTSEEECSSSS--------------THHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHH
T ss_pred             hcCCCcccCCCCEEEECCchH--------------HHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcc
Confidence            004567   899999999998              99999999999999999999999999987 577754

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.70  E-value=8.2e-19  Score=149.23  Aligned_cols=87  Identities=29%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             HHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCC
Q 030946           27 ALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDA  106 (168)
Q Consensus        27 l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (168)
                      +.+++++++.+|||||++.||..||||||+|+|+..+...                                ...+++++
T Consensus       379 ~~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~l~~~--------------------------------~~~l~~~~  426 (466)
T 3r2u_A          379 HSEDITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLET--------------------------------DLPFNKND  426 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHhCCCcEEEEeCCHHHHhcCcCCCCEECCHHHHHHH--------------------------------HhhCCCCC
Confidence            4555555678999999999999999999999999876431                                23467889


Q ss_pred             eEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh
Q 030946          107 KIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus       107 ~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~  159 (168)
                      +||+||.+|.              ||..++..|+..||++|++|+||+.+|++
T Consensus       427 ~iv~~C~~G~--------------rs~~a~~~L~~~G~~~v~~l~GG~~~W~~  465 (466)
T 3r2u_A          427 VIYVHCQSGI--------------RSSIAIGILEHKGYHNIINVNEGYKDIQL  465 (466)
T ss_dssp             -----------------------------------------------------
T ss_pred             eEEEECCCCh--------------HHHHHHHHHHHcCCCCEEEecChHHHHhh
Confidence            9999999997              99999999999999999999999999975

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.70  E-value=2.1e-17  Score=128.15  Aligned_cols=97  Identities=23%  Similarity=0.250  Sum_probs=69.9

Q ss_pred             CCeEEEecCChhhhhhcCCCCcEEechh--hHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEE
Q 030946           34 NNFVILDVRPEAEFKEAHPPGAINVQIY--RLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVA  111 (168)
Q Consensus        34 ~~~~liDvR~~~e~~~ghIpgAi~ip~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~y  111 (168)
                      ++.+|||+|++.||..||||||+|+|+.  .+.........            ...+.+.+++..     +..+++||+|
T Consensus         5 ~~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-----l~~~~~ivvy   67 (230)
T 2eg4_A            5 EDAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELK------------ALEGGLTELFQT-----LGLRSPVVLY   67 (230)
T ss_dssp             TTCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHH------------HHHHHHHHHHHH-----TTCCSSEEEE
T ss_pred             CCEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcC------------CCHHHHHHHHHh-----cCCCCEEEEE
Confidence            4789999999999999999999999997  43210000000            000112222222     3348899999


Q ss_pred             eCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946          112 CATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus       112 c~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      |.+|.             .+|.++++.|+ +||+||++|+||   |.+  +|++.
T Consensus        68 c~~g~-------------~~s~~a~~~L~-~G~~~v~~l~GG---W~~--~p~~~  103 (230)
T 2eg4_A           68 DEGLT-------------SRLCRTAFFLG-LGGLEVQLWTEG---WEP--YATEK  103 (230)
T ss_dssp             CSSSC-------------HHHHHHHHHHH-HTTCCEEEECSS---CGG--GCCBC
T ss_pred             cCCCC-------------ccHHHHHHHHH-cCCceEEEeCCC---Ccc--CcccC
Confidence            99986             38999999999 999999999999   877  77754

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.69  E-value=4.3e-17  Score=133.13  Aligned_cols=116  Identities=26%  Similarity=0.393  Sum_probs=86.9

Q ss_pred             eecHHHHHHHhhcC----CeEEEecCChhhhh-----------hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccC
Q 030946           21 SVEAKEALRLQKEN----NFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS   85 (168)
Q Consensus        21 ~i~~~~l~~~l~~~----~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~   85 (168)
                      .++.+++.+.++++    +.+|||+|++.+|.           .||||||+|+|+..+.+....             .+.
T Consensus       185 v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~-------------~~~  251 (327)
T 3utn_X          185 IVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETK-------------TYP  251 (327)
T ss_dssp             EECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTC-------------CCC
T ss_pred             eecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCC-------------CCC
Confidence            47888888888753    57899999999996           499999999999988653211             011


Q ss_pred             CC-CCchHHHHhh---hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC
Q 030946           86 GT-EENPEFLQTG---VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE  161 (168)
Q Consensus        86 ~~-~~~~~~~~~~---~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g  161 (168)
                      .. +.+...+++.   ...+++++++||+||++|.              +|+..+..|..+||++|++|+|+|.+|....
T Consensus       252 ~~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGv--------------tA~~~~laL~~lG~~~v~lYdGSWsEW~~r~  317 (327)
T 3utn_X          252 EAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGV--------------SGVIIKTALELAGVPNVRLYDGSWTEWVLKS  317 (327)
T ss_dssp             CTTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSH--------------HHHHHHHHHHHTTCCSEEEESSHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHH--------------HHHHHHHHHHHcCCCCceeCCCcHHHhcccc
Confidence            00 1111222210   2246889999999999998              9999999999999999999999999998654


Q ss_pred             CC
Q 030946          162 LP  163 (168)
Q Consensus       162 ~p  163 (168)
                      .|
T Consensus       318 ~p  319 (327)
T 3utn_X          318 GP  319 (327)
T ss_dssp             CG
T ss_pred             CC
Confidence            44

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.69  E-value=1.2e-17  Score=141.91  Aligned_cols=104  Identities=18%  Similarity=0.147  Sum_probs=85.8

Q ss_pred             hcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           16 LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      ...++.|+++++.+++++ + +|||+|++.+|..||||||+|+|+...+..+                          +.
T Consensus       269 ~~~~~~is~~~l~~~l~~-~-~iiD~R~~~~y~~ghIpGA~~i~~~~~~~~~--------------------------~~  320 (474)
T 3tp9_A          269 APERVDLPPERVRAWREG-G-VVLDVRPADAFAKRHLAGSLNIPWNKSFVTW--------------------------AG  320 (474)
T ss_dssp             CCEECCCCGGGHHHHHHT-S-EEEECSCHHHHHHSEETTCEECCSSTTHHHH--------------------------HH
T ss_pred             cCCCceeCHHHHHHHhCC-C-EEEECCChHHHhccCCCCeEEECcchHHHHH--------------------------HH
Confidence            445678999999999987 4 9999999999999999999999987533322                          22


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                      .   . .+++++||+||..+.               +.++++.|+.+||++|+++.+|+.+|..+|.|+..
T Consensus       321 ~---l-~~~~~~vvvy~~~~~---------------~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~  372 (474)
T 3tp9_A          321 W---L-LPADRPIHLLAADAI---------------APDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVAS  372 (474)
T ss_dssp             H---H-CCSSSCEEEECCTTT---------------HHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEEC
T ss_pred             h---c-CCCCCeEEEEECCCc---------------HHHHHHHHHHcCCcceEEecCcHHHHHhccccccc
Confidence            1   2 277899999999874               56699999999999999877799999998877653

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.35  E-value=8e-13  Score=112.28  Aligned_cols=79  Identities=19%  Similarity=0.132  Sum_probs=61.6

Q ss_pred             CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhhhccCCCCCeEEEEeC
Q 030946           34 NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACA  113 (168)
Q Consensus        34 ~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iV~yc~  113 (168)
                      ++.+|||+|++.+|..||||||+|+|+...+..+.                              ...++++++||+||.
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~~~~~~~~------------------------------~~~~~~~~~vvly~~  344 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYDKNFINQI------------------------------GWYLNYDQEINLIGD  344 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSSTTHHHHH------------------------------TTTCCTTSCEEEESC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCccHHHHHHH------------------------------HhccCCCCeEEEEEC
Confidence            46899999999999999999999999875433321                              123578899999999


Q ss_pred             CCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeE-ccccHHHH
Q 030946          114 TGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYH-LEGGLYKW  157 (168)
Q Consensus       114 ~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~-l~GG~~~w  157 (168)
                       +.              ++.++++.|+..||++|+. +.|+...|
T Consensus       345 -~~--------------~a~~a~~~L~~~G~~~v~~~l~g~~~~~  374 (466)
T 3r2u_A          345 -YH--------------LVSKATHTLQLIGYDDIAGYQLPQSKIQ  374 (466)
T ss_dssp             -HH--------------HHHHHHHHHHTTTCCCEEEEECCC----
T ss_pred             -Cc--------------hHHHHHHHhhhhhcccccccccCccccc
Confidence             43              7899999999999999997 56654443

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=97.66  E-value=6.6e-05  Score=54.26  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=31.2

Q ss_pred             eecHHHHHHHhhcCCeEEEecCChhh------------hhhc-CCCCcEEechhh
Q 030946           21 SVEAKEALRLQKENNFVILDVRPEAE------------FKEA-HPPGAINVQIYR   62 (168)
Q Consensus        21 ~i~~~~l~~~l~~~~~~liDvR~~~e------------~~~g-hIpgAi~ip~~~   62 (168)
                      .++++++..+.+.+-..|||+|+..|            +... +|+|.+|+|+..
T Consensus        29 ~~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~   83 (156)
T 2f46_A           29 QLTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTA   83 (156)
T ss_dssp             CCCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCT
T ss_pred             CCCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCC
Confidence            36778887776666678999997665            3334 599999999864

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=91.75  E-value=0.025  Score=41.39  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             eEEEecCChhhhhhcCCCCcEEechhhHH
Q 030946           36 FVILDVRPEAEFKEAHPPGAINVQIYRLI   64 (168)
Q Consensus        36 ~~liDvR~~~e~~~ghIpgAi~ip~~~l~   64 (168)
                      .++||||.+.||.    |||+|+|...+.
T Consensus       122 ~~liDvRe~~E~~----pgA~~iprg~lE  146 (168)
T 1v8c_A          122 GAVVRFREVEPLK----VGSLSIPQLRVE  146 (168)
T ss_dssp             TEEEEEEEEEEEE----ETTEEEEEEEEE
T ss_pred             eEEEECCChhhcC----CCCEEcChhHHH
Confidence            4999999999998    999999987653

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=90.11  E-value=0.27  Score=34.04  Aligned_cols=39  Identities=10%  Similarity=-0.007  Sum_probs=23.4

Q ss_pred             cHHHHHHHhhcCCeEEEecCChhhhhhcCCCCc--EEechh
Q 030946           23 EAKEALRLQKENNFVILDVRPEAEFKEAHPPGA--INVQIY   61 (168)
Q Consensus        23 ~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgA--i~ip~~   61 (168)
                      +++++..+.+.+-..|||+|+..+......+|-  +++|+.
T Consensus        24 ~~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~   64 (150)
T 4erc_A           24 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIP   64 (150)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCC
T ss_pred             CHHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecC
Confidence            456665555555678999998766544444443  345544

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=88.38  E-value=1.6  Score=34.33  Aligned_cols=34  Identities=12%  Similarity=0.124  Sum_probs=25.7

Q ss_pred             hhcccceecHHHHHHHhhcCCeEEEecCChhhhh
Q 030946           15 YLLQVRSVEAKEALRLQKENNFVILDVRPEAEFK   48 (168)
Q Consensus        15 ~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~   48 (168)
                      .+..+..++++++..+.+-+=..|||.|+..|..
T Consensus        49 RS~~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~   82 (296)
T 1ywf_A           49 RSSELSRLDDAGRATLRRLGITDVADLRSSREVA   82 (296)
T ss_dssp             EESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             ccCCcccCCHHHHHHHHhCCCCEEEECcChhhhh
Confidence            3455667889988777655567899999988864

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=88.06  E-value=0.43  Score=32.92  Aligned_cols=39  Identities=10%  Similarity=-0.007  Sum_probs=22.1

Q ss_pred             cHHHHHHHhhcCCeEEEecCChhhhhhcCCCC--cEEechh
Q 030946           23 EAKEALRLQKENNFVILDVRPEAEFKEAHPPG--AINVQIY   61 (168)
Q Consensus        23 ~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpg--Ai~ip~~   61 (168)
                      +++++..+.+.+-..|||+|+..++....+++  -+++|+.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~   65 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIP   65 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCC
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCC
Confidence            34555444444557899999876654333332  3455553

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=82.86  E-value=1.4  Score=32.52  Aligned_cols=26  Identities=15%  Similarity=0.059  Sum_probs=17.3

Q ss_pred             cHHHHHHHhhcCCeEEEecCChhhhh
Q 030946           23 EAKEALRLQKENNFVILDVRPEAEFK   48 (168)
Q Consensus        23 ~~~~l~~~l~~~~~~liDvR~~~e~~   48 (168)
                      ..+++..+.+.+-..|||+|...|..
T Consensus        60 ~~~d~~~L~~~gi~~Vv~l~~~~E~~   85 (212)
T 1fpz_A           60 VQKDTEELKSCGIQDIFVFCTRGELS   85 (212)
T ss_dssp             HHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             HHHHHHHHHHCCCCEEEEcCCHHHHH
Confidence            34555544445567899999987654

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=82.41  E-value=2.4  Score=29.27  Aligned_cols=29  Identities=21%  Similarity=0.438  Sum_probs=20.0

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCccchHH-HHHHHHHHcCcc
Q 030946          104 KDAKIIVACATGGTMKPSQNLPEGQQSRSL-IAAYLLVLNGYK  145 (168)
Q Consensus       104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~-~a~~~L~~~G~~  145 (168)
                      .+.+|+++|..|.+             |+. .++..|...|++
T Consensus        91 ~~~~vlvHC~aG~~-------------RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A           91 KNHPVLIHCKRGKH-------------RTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             GGCSEEEECSSSSS-------------HHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECCCCCC-------------HHHHHHHHHHHHhCCC
Confidence            46799999999984             543 445555666754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	4e-14
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	9e-13
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	3e-12
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	1e-11
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	4e-11
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	1e-10
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	3e-10
d1rhsa2	144	c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [	3e-10
d1uara2	141	c.46.1.2 (A:145-285) Sulfurtransferase {Thermus th	3e-09
d1urha2	120	c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtran	1e-08
d1qxna_	137	c.46.1.3 (A:) Polysulfide-sulfur transferase (sulf	6e-08
d1rhsa1	149	c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [Ta	9e-08
d1e0ca1	135	c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter	6e-07
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	9e-07
d1uara1	143	c.46.1.2 (A:2-144) Sulfurtransferase {Thermus ther	1e-06
d1t3ka_	132	c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {	5e-06
d1okga1	156	c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransf	8e-06
d1yt8a2	101	c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase P	1e-05
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	2e-05
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	3e-05
d1urha1	147	c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransf	1e-04
d1yt8a3	157	c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase	4e-04

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.0 bits (152), Expect = 4e-14
 Identities = 36/147 (24%), Positives = 45/147 (30%), Gaps = 35/147 (23%)

Query: 20  RSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFA 79
            SV    A  L        LDVR   EF + H  GAINV          +          
Sbjct: 8   SSVSVTVAHDLLLAG-HRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSK--------- 57

Query: 80  FFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLL 139
                             V S   +   IIV C +GG              RS+ A   L
Sbjct: 58  -----------NTDFLEQVSSHFGQSDNIIVGCQSGG--------------RSIKATTDL 92

Query: 140 VLNGYKNVYHLEGGLYKWFKEELPEVS 166
           +  G+  V  + GG   W K  LP  +
Sbjct: 93  LHAGFTGVKDIVGGYSAWAKNGLPTKA 119

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 59.0 bits (142), Expect = 9e-13
 Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 47/147 (31%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           Q   +   +A +  +E   V++D+R    F   H   A ++    L              
Sbjct: 3   QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDN------- 55

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                                    D D  ++V C  G              + S  AA 
Sbjct: 56  -------------------------DFDTPVMVMCYHG--------------NSSKGAAQ 76

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELPE 164
            L+  GY  VY ++GG   W + + P 
Sbjct: 77  YLLQQGYDVVYSIDGGFEAW-QRQFPA 102

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 3e-12
 Identities = 17/142 (11%), Positives = 39/142 (27%), Gaps = 18/142 (12%)

Query: 21  SVEAKEALRLQKENN--FVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
           ++ AKE   +  + N   +I+D R   +++++    +++V    +    TA  I      
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                +                +      +++                     +L     
Sbjct: 62  DSKDTW---------------KKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWES 106

Query: 139 LVLNGYKNVYHLEGGLYKWFKE 160
             +        LEGG   W   
Sbjct: 107 KTV-LRNEPLVLEGGYENWLLC 127

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 1e-11
 Identities = 24/145 (16%), Positives = 46/145 (31%), Gaps = 18/145 (12%)

Query: 23  EAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFG 82
              E L L  E   +++D RP+  ++ +H   AINV I  ++            A     
Sbjct: 22  WLNEQLELGNER-LLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALF--- 77

Query: 83  IFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN 142
                            ++      +++   +      +       +S   +    L   
Sbjct: 78  --------TRGEDRDRFTRRCGTDTVVLYDESSSDWNENTG----GESLLGLLLKKLKDE 125

Query: 143 GYKNVYHLEGGLYKWFKEELPEVSE 167
           G    ++LEGG +  F+ E     E
Sbjct: 126 GC-RAFYLEGG-FSKFQAEFSLHCE 148

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 4e-11
 Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 44/154 (28%)

Query: 18  QVRSVEAKEALRL------QKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD 71
            ++ +  +    +           FVI+D R   E++  H  GA+N+ +   +++     
Sbjct: 21  DLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVED----- 75

Query: 72  IARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 131
                                 L+  +     K   ++  C              G +  
Sbjct: 76  --------------------FLLKKPIVPTDGKRVIVVFHCEFSSE--------RGPRMC 107

Query: 132 SLIAAYLLVLN-----GYKNVYHLEGGLYKWFKE 160
             +     + N      Y  +Y L+GG  ++F +
Sbjct: 108 RYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK 141

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 1e-10
 Identities = 28/156 (17%), Positives = 50/156 (32%), Gaps = 34/156 (21%)

Query: 18  QVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWD 71
            ++ +  +  + L         + FVI+D R   E++  H   A+N+ + R  + +    
Sbjct: 21  DLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFL--- 77

Query: 72  IARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 131
                                         LDK   +I  C       P       ++ R
Sbjct: 78  ---------------------LKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDR 116

Query: 132 SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE 167
           ++          Y  +Y L+GG YK F  + P   E
Sbjct: 117 AV---NDYPSLYYPEMYILKGG-YKEFFPQHPNFCE 148

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 53.4 bits (127), Expect = 3e-10
 Identities = 21/146 (14%), Positives = 34/146 (23%), Gaps = 25/146 (17%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
                 L      +  I D R   E++      A    I   +                 
Sbjct: 14  ASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTA---------AM 64

Query: 82  GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141
                     +      E  +  D +I+  C T                RS +   +   
Sbjct: 65  DPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHH--------------RSGLTYLIAKA 110

Query: 142 NGYKNVYHLEGGLYKWFK-EELP-EV 165
            GY  V    G   +W    + P E+
Sbjct: 111 LGYPRVKGYAGSWGEWGNHPDTPVEL 136

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.3 bits (127), Expect = 3e-10
 Identities = 23/144 (15%), Positives = 41/144 (28%), Gaps = 21/144 (14%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
              ++ L   +   F ++D R +  +    P           I+               F
Sbjct: 13  KTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGF 72

Query: 82  GIFSGTEENPEFLQT-GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 140
                   +PE L+      ++D    +I  C  G                +   A    
Sbjct: 73  EK------SPEELRAMFEAKKVDLTKPLIATCRKGV--------------TACHIALAAY 112

Query: 141 LNGYKNVYHLEGGLYKWFKEELPE 164
           L G  +V   +G  ++WF    PE
Sbjct: 113 LCGKPDVAIYDGSWFEWFHRAPPE 136

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 141

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.6 bits (120), Expect = 3e-09
 Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 16/154 (10%)

Query: 17  LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
           ++    +  E +   KE    ++DVR   E++          Q    ++           
Sbjct: 2   IRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGA-LRAGHIPGAKNIP 60

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                      +   E         + KD  I+V C                   S    
Sbjct: 61  WAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERS-------------SHSWF 107

Query: 137 YLLVLNGYKNVYHLEGGLYKWFK-EELP-EVSEE 168
            L  L GY +V + +G   +W     +P    EE
Sbjct: 108 VLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGEE 141

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (114), Expect = 1e-08
 Identities = 24/136 (17%), Positives = 41/136 (30%), Gaps = 21/136 (15%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
           V+  + L    EN   I+D RP A F          ++   +     A ++         
Sbjct: 6   VKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHI---PGALNVPWTELVREG 62

Query: 82  GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141
            + +  E +  F        +  D  IIV+C              G    + +    L  
Sbjct: 63  ELKTTDELDAIFFGR----GVSYDKPIIVSC--------------GSGVTAAVVLLALAT 104

Query: 142 NGYKNVYHLEGGLYKW 157
               NV   +G   +W
Sbjct: 105 LDVPNVKLYDGAWSEW 120

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

 Score = 47.2 bits (111), Expect = 6e-08
 Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 42/152 (27%)

Query: 18  QVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
            +  +  K+A +L +EN +  ++DVR   E K    P   N +     K           
Sbjct: 21  DMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAK---- 76

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                                  S LD +  ++V C T               +R+ +A 
Sbjct: 77  -----------------------SGLDPEKPVVVFCKT--------------AARAALAG 99

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
             L   G+K +Y+ EGG+ KW +E LP +   
Sbjct: 100 KTLREYGFKTIYNSEGGMDKWLEEGLPSLDRS 131

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (110), Expect = 9e-08
 Identities = 25/155 (16%), Positives = 45/155 (29%), Gaps = 33/155 (21%)

Query: 23  EAKEALRLQKEN-NFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIA 73
              E++R  K      +LD             E+ E H PGA    I     + + +++ 
Sbjct: 14  WLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVM 73

Query: 74  RRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSL 133
             +   F         +                 ++      G+    +           
Sbjct: 74  LPSEAGFADYVGSLGISN------------DTHVVVYDGDDLGSFYAPRV---------- 111

Query: 134 IAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE 168
              ++  + G++ V  L GG   W KE  P  SE 
Sbjct: 112 --WWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP 144

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 44.3 bits (103), Expect = 6e-07
 Identities = 24/147 (16%), Positives = 41/147 (27%), Gaps = 26/147 (17%)

Query: 22  VEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFF 81
           +E  +          +++D+   A + E H PGA  V   R           +       
Sbjct: 11  IEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLE 70

Query: 82  GIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL 141
            +F      PE +             ++     GG       L +               
Sbjct: 71  SLFGELGHRPEAVY------------VVYDDEGGGWAGRFIWLLDVIG------------ 106

Query: 142 NGYKNVYHLEGGLYKWFKEELPEVSEE 168
              +  ++L GGL  W  E+ P   E 
Sbjct: 107 --QQRYHYLNGGLTAWLAEDRPLSREL 131

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 44.0 bits (103), Expect = 9e-07
 Identities = 17/134 (12%), Positives = 32/134 (23%), Gaps = 34/134 (25%)

Query: 35  NFVILDVRPEAEF-----------KEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGI 83
             +I D R    F              H  GA N+     +       + R        I
Sbjct: 12  QAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNI 71

Query: 84  FSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNG 143
            +  +                 +  + +C +G                + I   L+   G
Sbjct: 72  MTVVQG---------AGDAADLSSFVFSCGSG--------------VTACINIALVHHLG 108

Query: 144 YKNVYHLEGGLYKW 157
             + Y   G   ++
Sbjct: 109 LGHPYLYCGSWSEY 122

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 43.3 bits (101), Expect = 1e-06
 Identities = 23/148 (15%), Positives = 40/148 (27%), Gaps = 29/148 (19%)

Query: 22  VEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAF 80
           V         ++    +L+V      +   H PGA  +   R   +    D      FA 
Sbjct: 9   VSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAK 68

Query: 81  FGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV 140
                                +  D  +++                          +   
Sbjct: 69  LMERL---------------GISNDTTVVLYGDKNNWWAAYAF-------------WFFK 100

Query: 141 LNGYKNVYHLEGGLYKWFKEELPEVSEE 168
            NG+K+V  + GG  KW +E  P  +E 
Sbjct: 101 YNGHKDVRLMNGGRQKWVEEGRPLTTEV 128

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.7 bits (96), Expect = 5e-06
 Identities = 20/145 (13%), Positives = 38/145 (26%), Gaps = 33/145 (22%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
           +  + + + L L +  N  I+DVR E    + H  G+++        + +          
Sbjct: 7   ISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDKISHLVQ------ 60

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                                  +     ++   A      P+       +         
Sbjct: 61  ----------------------NVKDKDTLVFHSALSQVRGPTC-----ARRLVNYLDEK 93

Query: 139 LVLNGYKNVYHLEGGLYKWFKEELP 163
               G KN+  LE G   W     P
Sbjct: 94  KEDTGIKNIMILERGFNGWEASGKP 118

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 41.6 bits (97), Expect = 8e-06
 Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 31/143 (21%)

Query: 34  NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFS 85
             + I+D R           ++ + H   AI   +   + +      AR           
Sbjct: 20  AEYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHP--------- 70

Query: 86  GTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYK 145
                 EF+   + + +  +  ++      G M   +              ++L   G  
Sbjct: 71  -LPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCR------------LWWMLNSLGA- 116

Query: 146 NVYHLEGGLYKWFKEELPEVSEE 168
           + Y + GG        L   S E
Sbjct: 117 DAYVINGGFQACKAAGLEMESGE 139

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.0 bits (92), Expect = 1e-05
 Identities = 33/142 (23%), Positives = 44/142 (30%), Gaps = 45/142 (31%)

Query: 19  VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAF 78
           VR+     A  L       +LDVR E  F +AHP  A N+ + RL  E  A         
Sbjct: 3   VRTFHDIRA-ALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVP------ 55

Query: 79  AFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYL 138
                                    +D  I V                  +  + +AA  
Sbjct: 56  ------------------------RRDTPITVYD--------------DGEGLAPVAAQR 77

Query: 139 LVLNGYKNVYHLEGGLYKWFKE 160
           L   GY +V  L+GGL  W   
Sbjct: 78  LHDLGYSDVALLDGGLSGWRNA 99

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.4 bits (93), Expect = 2e-05
 Identities = 24/144 (16%), Positives = 46/144 (31%), Gaps = 47/144 (32%)

Query: 19  VRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
           V  ++     + Q E+     +LDVR   E++  H PG+ +    +L++E          
Sbjct: 22  VERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQETDHVAS---- 77

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                                      + A++++    G               R+ ++A
Sbjct: 78  --------------------------VRGARLVLVDDDGV--------------RANMSA 97

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKE 160
             L   G+  V  L+G     F E
Sbjct: 98  SWLAQMGW-QVAVLDGLSEADFSE 120

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 26/147 (17%), Positives = 34/147 (23%), Gaps = 44/147 (29%)

Query: 18  QVRSVEAKEAL-RLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRA 76
              S+ A+E    L      VILD R   E++    PG I+V    L+            
Sbjct: 22  HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAP---- 77

Query: 77  AFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAA 136
                                     D   ++IV CA                       
Sbjct: 78  --------------------------DPRTRVIVNCAGRTRSII-------------GTQ 98

Query: 137 YLLVLNGYKNVYHLEGGLYKWFKEELP 163
            LL       V  L  G   W      
Sbjct: 99  SLLNAGIPNPVAALRNGTIGWTLAGQQ 125

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]} Length = 147

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (87), Expect = 1e-04
 Identities = 27/152 (17%), Positives = 43/152 (28%), Gaps = 36/152 (23%)

Query: 22  VEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWD 71
           V A        +    I+D R             E+   H PGA+   I  L    +   
Sbjct: 5   VGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLP 64

Query: 72  IARRAAFAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSR 131
                   F                  E  +++D  +IV                     
Sbjct: 65  HMLPRPETFAVAM-------------RELGVNQDKHLIVYDEGNLFS------------- 98

Query: 132 SLIAAYLLVLNGYKNVYHLEGGLYKWFKEELP 163
           +  A ++L   G + V  L GGL  W +++L 
Sbjct: 99  APRAWWMLRTFGVEKVSILGGGLAGWQRDDLL 130

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 157

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 20/146 (13%), Positives = 37/146 (25%), Gaps = 46/146 (31%)

Query: 18  QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAA 77
           +  +++         E    +LD    A + + H PGA  V   +L +            
Sbjct: 3   RADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL------- 55

Query: 78  FAFFGIFSGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAY 137
                                        + ++ C +                 +  A  
Sbjct: 56  -------------------------GTAERYVLTCGSSL--------------LARFAVA 76

Query: 138 LLVLNGYKNVYHLEGGLYKWFKEELP 163
            +     K V+ L+GG   W    LP
Sbjct: 77  EVQALSGKPVFLLDGGTSAWVAAGLP 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.94
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.94
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.94
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.94
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.93
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.93
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.92
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.92
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.91
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.9
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.9
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.88
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.86
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.82
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.79
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.72
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	93.71
d1jl3a_	137	Arsenate reductase ArsC {Bacillus subtilis [TaxId:	88.76
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	88.19
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	85.66
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	81.22
d1jf8a_	130	Arsenate reductase ArsC {Staphylococcus aureus [Ta	80.51
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	80.09

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.5e-27  Score=165.80  Aligned_cols=115  Identities=35%  Similarity=0.516  Sum_probs=95.7

Q ss_pred             cccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      .....|+++++.++++. +.+|||||++.||..||||||+|+|+..+...                   ......+++.+
T Consensus         5 ~~p~~i~~~~a~~l~~~-g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~-------------------~~~~~~~~~~~   64 (119)
T d1tq1a_           5 RVPSSVSVTVAHDLLLA-GHRYLDVRTPEEFSQGHACGAINVPYMNRGAS-------------------GMSKNTDFLEQ   64 (119)
T ss_dssp             CCCEEEEHHHHHHHHHH-TCCEEEESCHHHHHHCCBTTBEECCSCCCSTT-------------------TCCCTTTHHHH
T ss_pred             cCCCccCHHHHHHHHHC-cCEEEECCCHHHHHcCCCCCccchhhcccccc-------------------cccccHHHHHH
Confidence            34567999999999987 57899999999999999999999998654221                   12234555555


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                       ....++++++||+||++|.              ||..++..|.+.||+||++|.||+.+|.++|+|++.
T Consensus        65 -~~~~~~~~~~iv~~C~~G~--------------rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~ea  119 (119)
T d1tq1a_          65 -VSSHFGQSDNIIVGCQSGG--------------RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTKA  119 (119)
T ss_dssp             -HTTTCCTTSSEEEEESSCS--------------HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC-
T ss_pred             -HHHhcCCCcEEEEEcCCcC--------------cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCccC
Confidence             4456789999999999997              999999999999999999999999999999999873

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.94  E-value=1e-26  Score=166.53  Aligned_cols=118  Identities=19%  Similarity=0.263  Sum_probs=99.4

Q ss_pred             cccceecHHHHHHHhhcCCeEEEecCChhhhh--------hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCC
Q 030946           17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFK--------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE   88 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~--------~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   88 (168)
                      .....+|.+++.+.+.+++.+|||+|++.||.        .||||||+|+|+..+....              +.+...+
T Consensus         9 ~~~~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~--------------~~~~~~~   74 (136)
T d1e0ca2           9 HDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPS--------------RALRIRT   74 (136)
T ss_dssp             CSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGG--------------GTTEECT
T ss_pred             CCCceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccc--------------cccchhH
Confidence            34567999999999988899999999999996        6899999999998765421              2344455


Q ss_pred             CchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh-cCCCCC
Q 030946           89 ENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEV  165 (168)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~-~g~p~~  165 (168)
                      ++.+.++.   .+++++++||+||++|.              ||+.+++.|+.+||+||++|+||+.+|.+ .++|++
T Consensus        75 ~l~~~~~~---~gi~~~~~vV~yC~~G~--------------~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          75 DIAGRLEE---LGITPDKEIVTHCQTHH--------------RSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             THHHHHHH---TTCCTTSEEEEECSSSS--------------HHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             HHhhhhhh---cccCCCCceEEeCCChH--------------HHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            55555554   78899999999999987              99999999999999999999999999965 589986

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=1.6e-26  Score=165.42  Aligned_cols=109  Identities=28%  Similarity=0.336  Sum_probs=93.6

Q ss_pred             hcccceecHHHHHHHhhcC-CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHH
Q 030946           16 LLQVRSVEAKEALRLQKEN-NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFL   94 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~-~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
                      ...++.|+++++.++++.+ +.+|||||++.||..||||||+|+|...+....                           
T Consensus        20 ~~~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~~l~~~~---------------------------   72 (136)
T d1yt8a1          20 ERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELVLRV---------------------------   72 (136)
T ss_dssp             HHCCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGGGHHHHH---------------------------
T ss_pred             HcCCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhhHHHHHh---------------------------
Confidence            4457789999999999654 689999999999999999999999988764321                           


Q ss_pred             HhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccc-eeEccccHHHHHhcCCCCCCCC
Q 030946           95 QTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKN-VYHLEGGLYKWFKEELPEVSEE  168 (168)
Q Consensus        95 ~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~-v~~l~GG~~~w~~~g~p~~~~~  168 (168)
                      .   ....+++++||+||.+|.              ||..++..|+..||+| |++|.||+.+|..+|+|+++++
T Consensus        73 ~---~l~~~~~~~iV~~C~~g~--------------rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g~  130 (136)
T d1yt8a1          73 A---ELAPDPRTRVIVNCAGRT--------------RSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQ  130 (136)
T ss_dssp             H---HHCCSTTSEEEEECSSSH--------------HHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCSC
T ss_pred             h---cccccccceEEEEcCCCC--------------chHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeCC
Confidence            1   123457789999999997              9999999999999986 9999999999999999999874

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=6.9e-27  Score=161.01  Aligned_cols=102  Identities=26%  Similarity=0.425  Sum_probs=90.9

Q ss_pred             ccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh
Q 030946           18 QVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG   97 (168)
Q Consensus        18 ~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (168)
                      .+..|+++++.+++++++.+|||||++.||..||||||+|+|...+...                               
T Consensus         3 ~~~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~l~~~-------------------------------   51 (108)
T d1gmxa_           3 QFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF-------------------------------   51 (108)
T ss_dssp             SCEEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHHHHHHH-------------------------------
T ss_pred             CCCEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccchhHHHH-------------------------------
Confidence            4778999999999988899999999999999999999999999876431                               


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVS  166 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~  166 (168)
                       ...++++++||+||.+|.              ||..++..|...||+||++|.||+.+|+++ +|++.
T Consensus        52 -~~~~~~~~~ivv~c~~g~--------------rs~~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e~  104 (108)
T d1gmxa_          52 -MRDNDFDTPVMVMCYHGN--------------SSKGAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEV  104 (108)
T ss_dssp             -HHHSCTTSCEEEECSSSS--------------HHHHHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGE
T ss_pred             -hhhccccCcccccCCCCh--------------HHHHHHHHHHHcCCCCEEEEcChHHHHHHc-CCCcc
Confidence             234688999999999987              999999999999999999999999999765 78753

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=1.4e-26  Score=169.27  Aligned_cols=105  Identities=20%  Similarity=0.298  Sum_probs=95.0

Q ss_pred             cccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           17 LQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      +.+..|+++++.+++++++.+|||||+..||..||||||+|+|...+...                              
T Consensus         2 P~~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~~~~~~------------------------------   51 (157)
T d1yt8a3           2 PRADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQA------------------------------   51 (157)
T ss_dssp             CCCCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGGGHHHH------------------------------
T ss_pred             CCCCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceeccccccccc------------------------------
Confidence            56788999999999988899999999999999999999999999876432                              


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                        ...++++++||+||.+|.              ||..++..|...||++|++|.||+.+|.++|+|++++
T Consensus        52 --~~~~~~~~~vv~~c~~g~--------------rs~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~  106 (157)
T d1yt8a3          52 --LERLGTAERYVLTCGSSL--------------LARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDG  106 (157)
T ss_dssp             --HHHHCCCSEEEEECSSSH--------------HHHHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCS
T ss_pred             --ccccccCcceeeccCCcc--------------hHHHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCC
Confidence              233578899999999997              9999999999999999999999999999999999875

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.9e-27  Score=168.55  Aligned_cols=123  Identities=22%  Similarity=0.231  Sum_probs=98.2

Q ss_pred             ceecHHHHHHHhhcCCeEEEecC----------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           20 RSVEAKEALRLQKENNFVILDVR----------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR----------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ..|++++|.+.|.+++.+|||+|          ..++|..||||||+|+++..+.....          ...+++++.+.
T Consensus         3 ~lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~----------~~~~~~p~~~~   72 (147)
T d1urha1           3 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTS----------PLPHMLPRPET   72 (147)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSS----------SSSSCCCCHHH
T ss_pred             ccCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccc----------cccccCCCHHH
Confidence            46899999999998899999999          34689999999999999876543211          11222333333


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCCC
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSEE  168 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~~  168 (168)
                      +.+.+   ...++.++++||+||.+++             ..|.++++.|+.+||+||++|+||+.+|+++|+|++++.
T Consensus        73 ~~~~l---~~~Gi~~~~~vVvY~~~~~-------------~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~  135 (147)
T d1urha1          73 FAVAM---RELGVNQDKHLIVYDEGNL-------------FSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGA  135 (147)
T ss_dssp             HHHHH---HHTTCCTTSEEEEECSSSC-------------SSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSC
T ss_pred             HHHHH---HHhCcCCCCeEEEEeCCCc-------------ccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCC
Confidence            33444   4589999999999998766             278899999999999999999999999999999999763

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.5e-26  Score=165.73  Aligned_cols=120  Identities=20%  Similarity=0.287  Sum_probs=96.6

Q ss_pred             ceecHHHHHHHhhcCCeEEEecC-ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           20 RSVEAKEALRLQKENNFVILDVR-PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR-~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      ..||+++|.+.+.+++++|||+| +..+|..||||||+|+++......            ...+++...+.+++.+   .
T Consensus         7 ~lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~------------~~~~~l~~~~~l~~~~---~   71 (143)
T d1uara1           7 VLVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWD------------PVVRDFISEEEFAKLM---E   71 (143)
T ss_dssp             GEECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBC------------SSSSSBCCHHHHHHHH---H
T ss_pred             ccCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccc------------cccccchhhHHHHHHh---h
Confidence            47999999999988899999999 478999999999999998654321            1112222222333333   3


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      ..++.++++||+||+++.             ..|.++++.|+.+|+++|++|+||+.+|.++|+|++++
T Consensus        72 ~~Gi~~~~~iVvy~~~~~-------------~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~  127 (143)
T d1uara1          72 RLGISNDTTVVLYGDKNN-------------WWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTE  127 (143)
T ss_dssp             HTTCCTTCEEEEECHHHH-------------HHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCC
T ss_pred             hhccCCCceEEEecCCCc-------------ccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCC
Confidence            478899999999998876             37889999999999999999999999999999999875

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.92  E-value=3.5e-25  Score=156.80  Aligned_cols=122  Identities=22%  Similarity=0.248  Sum_probs=94.9

Q ss_pred             cceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCch-HHHHhh
Q 030946           19 VRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP-EFLQTG   97 (168)
Q Consensus        19 ~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   97 (168)
                      ...|++++|.+++.+++.+|||||++.||..||||||+|+|+..+......              ........ .+....
T Consensus         8 p~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~   73 (135)
T d1e0ca1           8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPP--------------APGLQPPREQLESLF   73 (135)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTT--------------CTTSCCCHHHHHHHH
T ss_pred             CcEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccc--------------cchhhcchhhhhhhh
Confidence            356899999999988899999999999999999999999998876432110              00111111 122222


Q ss_pred             hhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           98 VESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        98 ~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      .......+..+|+||..++             .++.++++.|+..||+||++|+||+.+|+++|+|++++
T Consensus        74 ~~~~~~~~~~~i~~~~~~~-------------~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~  130 (135)
T d1e0ca1          74 GELGHRPEAVYVVYDDEGG-------------GWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRE  130 (135)
T ss_dssp             HHHTCCTTCEEEEECSSSS-------------HHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCC
T ss_pred             ccccccccccccccccccC-------------ccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCC
Confidence            3355677788888888776             48899999999999999999999999999999999975

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=4.4e-25  Score=149.68  Aligned_cols=99  Identities=29%  Similarity=0.307  Sum_probs=84.7

Q ss_pred             ceecHHHHHHHhh-cCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           20 RSVEAKEALRLQK-ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        20 ~~i~~~~l~~~l~-~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      +.+|++|+++++. .++.+|||||++.||..||||||+|+|...+....                              .
T Consensus         2 ~v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~~~~~~~------------------------------~   51 (101)
T d1yt8a2           2 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEI------------------------------H   51 (101)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGGGHHHHH------------------------------H
T ss_pred             CcCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCcccccccchhhhh------------------------------h
Confidence            5678999998874 44799999999999999999999999998764321                              1


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCC
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  162 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~  162 (168)
                      .....++++||+||.++.              +|..++..|.++||+||++|+||+.+|+++|.
T Consensus        52 ~~~~~~~~~vv~~~~~g~--------------~s~~~~~~l~~~G~~nV~~l~GG~~~W~~aGg  101 (101)
T d1yt8a2          52 ARVPRRDTPITVYDDGEG--------------LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGG  101 (101)
T ss_dssp             HHSCCTTSCEEEECSSSS--------------HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTC
T ss_pred             hcccccCceeeeccchhh--------------hHHHHHHHHHHcCCCcEEEeCChHHHHHHCcC
Confidence            133456789999999998              99999999999999999999999999999873

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.91  E-value=7e-25  Score=156.96  Aligned_cols=108  Identities=29%  Similarity=0.484  Sum_probs=92.8

Q ss_pred             hcccceecHHHHHHHhhc-CCeEEEecCChhhhhhcC---CCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCch
Q 030946           16 LLQVRSVEAKEALRLQKE-NNFVILDVRPEAEFKEAH---PPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP   91 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~-~~~~liDvR~~~e~~~gh---IpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (168)
                      ...+..|||+|+.+++++ ++.+|||||++.||..+|   |+||+|+|...+...                         
T Consensus        19 ~~~~~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~~l~~~-------------------------   73 (137)
T d1qxna_          19 KADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPL-------------------------   73 (137)
T ss_dssp             HHSSEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTTTSHHH-------------------------
T ss_pred             HccCCEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCccccccc-------------------------
Confidence            456889999999999964 479999999999999998   677999998654321                         


Q ss_pred             HHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           92 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        92 ~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                        +   ....++++++|||||.+|.              ||..++..|...||+||++|.||+.+|.++|+|+...
T Consensus        74 --~---~~~~~~~~~~ivvyC~~G~--------------rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~  130 (137)
T d1qxna_          74 --L---AKSGLDPEKPVVVFCKTAA--------------RAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDR  130 (137)
T ss_dssp             --H---HHHCCCTTSCEEEECCSSS--------------CHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECC
T ss_pred             --c---cccccCcccceeeeecccc--------------hHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCC
Confidence              1   1245788999999999997              9999999999999999999999999999999998754

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=4.5e-25  Score=160.11  Aligned_cols=124  Identities=20%  Similarity=0.246  Sum_probs=94.8

Q ss_pred             ceecHHHHHHHhhc----CCeEEEecC--------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCC
Q 030946           20 RSVEAKEALRLQKE----NNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT   87 (168)
Q Consensus        20 ~~i~~~~l~~~l~~----~~~~liDvR--------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~   87 (168)
                      ..||+++|.+.++.    ++.+|||+|        ..++|..||||||+|+++..+.....          ...+.+...
T Consensus         8 ~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~----------~~~~~~~~~   77 (149)
T d1rhsa1           8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKAS----------PYEVMLPSE   77 (149)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTS----------SSSSCCCCH
T ss_pred             CccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhccccc----------chhhhhhhh
Confidence            46899999999973    378999999        46799999999999999876543210          111222222


Q ss_pred             CCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           88 EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                         .++.+.+...++.++++||+||++....           ..+.++++.|+.+||+||++|+||+.+|+++|+|++++
T Consensus        78 ---~~~~~~l~~~Gi~~~~~vVvy~~~~~~~-----------~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~  143 (149)
T d1rhsa1          78 ---AGFADYVGSLGISNDTHVVVYDGDDLGS-----------FYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSE  143 (149)
T ss_dssp             ---HHHHHHHHHTTCCTTCEEEEECCCSSSC-----------SSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCS
T ss_pred             ---HHHHHHHhhhhccCCceeEEeeccCCcc-----------hhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCC
Confidence               2333333458899999999999753200           27889999999999999999999999999999999875

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=6.1e-24  Score=150.63  Aligned_cols=102  Identities=24%  Similarity=0.272  Sum_probs=88.2

Q ss_pred             hcccceecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHH
Q 030946           16 LLQVRSVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEF   93 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
                      ...+..|+++++.++++++  +++|||||++.||..||||||+|+|+..+....                          
T Consensus        19 ~~~~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~~~~~~~--------------------------   72 (130)
T d1yt8a4          19 RAGVERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLVQET--------------------------   72 (130)
T ss_dssp             HHTCEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHHHHHHSH--------------------------
T ss_pred             HcCCcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccccccccc--------------------------
Confidence            4468999999999999754  589999999999999999999999998775421                          


Q ss_pred             HHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCC
Q 030946           94 LQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEEL  162 (168)
Q Consensus        94 ~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~  162 (168)
                          ......++++||+||.+|.              ||..++..|+++|| ++++|+||+.+|..++.
T Consensus        73 ----~~~~~~~~~~ivl~C~~G~--------------rS~~aa~~L~~~G~-~v~~l~GG~~aw~~~~g  122 (130)
T d1yt8a4          73 ----DHVASVRGARLVLVDDDGV--------------RANMSASWLAQMGW-QVAVLDGLSEADFSERG  122 (130)
T ss_dssp             ----HHHCCSBTCEEEEECSSSS--------------HHHHHHHHHHHTTC-EEEEECSCCGGGCCBCS
T ss_pred             ----ccccCCccceEEeecCCCc--------------cHHHHHHHHHHcCC-CeEEEcCchHHHHHhcC
Confidence                1134678899999999987              99999999999999 69999999999988753

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=3.9e-25  Score=157.02  Aligned_cols=111  Identities=21%  Similarity=0.286  Sum_probs=90.0

Q ss_pred             hcccceecHHHHHHHhhcCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHH
Q 030946           16 LLQVRSVEAKEALRLQKENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQ   95 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
                      +..++.|+++++.+++++++.+|||||++.||..||||||+|+|+..+...                       .+++  
T Consensus         4 ~~~v~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~~~-----------------------~~~~--   58 (132)
T d1t3ka_           4 ARSISYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFDDK-----------------------ISHL--   58 (132)
T ss_dssp             CSSSEEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSSTT-----------------------HHHH--
T ss_pred             ccCCCEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccccc-----------------------cccc--
Confidence            566899999999999988899999999999999999999999999765321                       1222  


Q ss_pred             hhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHH--------HcCccceeEccccHHHHHhcCCCCCCC
Q 030946           96 TGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV--------LNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        96 ~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~--------~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                         .....+++.+|+||..+.             .|+..++..|.        ..||+||++|.||+.+|.++|+|+..+
T Consensus        59 ---~~~~~~~~~iv~~c~~~~-------------~~~~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~  122 (132)
T d1t3ka_          59 ---VQNVKDKDTLVFHSALSQ-------------VRGPTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRC  122 (132)
T ss_dssp             ---HHTCCSCCEEEESSSCCS-------------SSHHHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCC
T ss_pred             ---ccccccccceEEEecccc-------------ccchHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccC
Confidence               233567889999998776             26655555544        469999999999999999999999864

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=1e-24  Score=157.33  Aligned_cols=117  Identities=19%  Similarity=0.329  Sum_probs=94.6

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhh------------hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCC
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFK------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGT   87 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~------------~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~   87 (168)
                      ..++.+++.+.+++++.+|||+|++.||.            .||||||+|+|+..+....              +.+...
T Consensus        11 ~i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~--------------~~~~~~   76 (144)
T d1rhsa2          11 LLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTED--------------GFEKSP   76 (144)
T ss_dssp             GEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTT--------------SCBCCH
T ss_pred             HeecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhh--------------cccCCH
Confidence            46899999999998899999999999995            6999999999998765421              122222


Q ss_pred             CCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcC---CCC
Q 030946           88 EENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEE---LPE  164 (168)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g---~p~  164 (168)
                      +.+.+.+.   ..++.++++||+||++|.              ||+.++..|..+||++|++|+|||.+|...+   .||
T Consensus        77 ~~l~~~~~---~~gi~~~~~iI~yC~sG~--------------~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~pV  139 (144)
T d1rhsa2          77 EELRAMFE---AKKVDLTKPLIATCRKGV--------------TACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWV  139 (144)
T ss_dssp             HHHHHHHH---HTTCCTTSCEEEECSSSS--------------THHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEE
T ss_pred             HHHHHHHH---HcCCCCCCCEEEEecccc--------------hHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCCc
Confidence            23333333   367899999999999997              9999999999999999999999999998765   455


Q ss_pred             CCC
Q 030946          165 VSE  167 (168)
Q Consensus       165 ~~~  167 (168)
                      ++|
T Consensus       140 ~~G  142 (144)
T d1rhsa2         140 SQG  142 (144)
T ss_dssp             BTT
T ss_pred             CCC
Confidence            554

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2e-24  Score=155.28  Aligned_cols=114  Identities=27%  Similarity=0.433  Sum_probs=88.4

Q ss_pred             HHHHHHH---hhcCCeEEEecCChhhhh----------------hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhcccc
Q 030946           24 AKEALRL---QKENNFVILDVRPEAEFK----------------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIF   84 (168)
Q Consensus        24 ~~~l~~~---l~~~~~~liDvR~~~e~~----------------~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~   84 (168)
                      .+++.+.   +++++.+|||+|++.||.                .||||||+|+|+..+....              +.+
T Consensus         6 ~~~v~~~~~~~~~~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~--------------~~~   71 (141)
T d1uara2           6 RDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPD--------------GTF   71 (141)
T ss_dssp             HHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTT--------------SCB
T ss_pred             HHHHHHHHHHhhCCCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccc--------------ccc
Confidence            4455443   356689999999999996                6999999999998765421              122


Q ss_pred             CCCCCchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH-cCccceeEccccHHHHHh-cCC
Q 030946           85 SGTEENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL-NGYKNVYHLEGGLYKWFK-EEL  162 (168)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~-~G~~~v~~l~GG~~~w~~-~g~  162 (168)
                      ...+++.+.+   ...++.++++||+||++|.              +|+.++..|.. +||+||++|+||+.+|.+ .++
T Consensus        72 ~~~~~~~~~~---~~~gi~~d~~vV~yC~~G~--------------~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~  134 (141)
T d1uara2          72 KSAEELRALY---EPLGITKDKDIVVYCRIAE--------------RSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGV  134 (141)
T ss_dssp             CCHHHHHHHH---GGGTCCTTSEEEEECSSHH--------------HHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTC
T ss_pred             ccHHHHHHHH---HHhCCCCCCeEEEEecCcc--------------hHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCC
Confidence            2222233333   3477899999999999997              99999999985 899999999999999965 799


Q ss_pred             CCCCCC
Q 030946          163 PEVSEE  168 (168)
Q Consensus       163 p~~~~~  168 (168)
                      |+++++
T Consensus       135 Pv~~g~  140 (141)
T d1uara2         135 PIAKGE  140 (141)
T ss_dssp             CCBCSC
T ss_pred             CcccCC
Confidence            999875

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.88  E-value=7.4e-24  Score=154.57  Aligned_cols=123  Identities=14%  Similarity=0.155  Sum_probs=92.5

Q ss_pred             ceecHHHHHHHhhcCCeEEEecC--------ChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCch
Q 030946           20 RSVEAKEALRLQKENNFVILDVR--------PEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENP   91 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR--------~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (168)
                      ..|++++|.+.+.  +.+|||+|        ...+|..||||||++++++.........       ....+++++.   .
T Consensus         8 ~lvs~~~L~~~l~--d~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~-------~~~~~~lP~~---~   75 (156)
T d1okga1           8 VFLDPSEVADHLA--EYRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPT-------STARHPLPPC---A   75 (156)
T ss_dssp             CEECHHHHTTCGG--GSEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTT-------CCCSSCCCCH---H
T ss_pred             cEeCHHHHHHhcC--CCEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCC-------CCCccccCCH---H
Confidence            3799999999886  48999999        4789999999999999986543221000       0011122222   3


Q ss_pred             HHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhcCCCCCCC
Q 030946           92 EFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKEELPEVSE  167 (168)
Q Consensus        92 ~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~g~p~~~~  167 (168)
                      +|.+.+...++.++++||+||+.++.            ..+.+++|.|+.+|+ +|++|+||+.+|+++|+|++++
T Consensus        76 ~~~~~l~~lGI~~~~~VVvYd~~~g~------------~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t~  138 (156)
T d1okga1          76 EFIDWCMANGMAGELPVLCYDDECGA------------MGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESG  138 (156)
T ss_dssp             HHHHHHHHTTCSSSSCEEEECSSTTT------------TTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECS
T ss_pred             HHHHHHHhccccCCceEEEEeCCCCc------------hHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCCC
Confidence            44444445889999999999976542            268899999999997 7999999999999999999875

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.4e-22  Score=141.04  Aligned_cols=106  Identities=30%  Similarity=0.457  Sum_probs=84.5

Q ss_pred             ceecHHHHHHHhhcCCeEEEecCChhhhh-----------hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCC
Q 030946           20 RSVEAKEALRLQKENNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTE   88 (168)
Q Consensus        20 ~~i~~~~l~~~l~~~~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   88 (168)
                      ..++.+|+...+++++.+|||+|++++|.           .||||||+|+|+..+...               +.+... 
T Consensus         4 ~~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~---------------~~~~~~-   67 (120)
T d1urha2           4 AVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE---------------GELKTT-   67 (120)
T ss_dssp             GBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSS---------------SSBCCH-
T ss_pred             HHccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccc---------------cccCCH-
Confidence            35789999999988899999999999995           799999999998765321               111111 


Q ss_pred             CchHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHH
Q 030946           89 ENPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKW  157 (168)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w  157 (168)
                        .++.+.+...+++++++||+||++|.              ||+.++..|+.+||+||++|+|||.+|
T Consensus        68 --~~~~~~~~~~g~~~~~~ii~yC~sG~--------------~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          68 --DELDAIFFGRGVSYDKPIIVSCGSGV--------------TAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             --HHHHHHHHTTTCCSSSCEEEECCSSS--------------THHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             --HHhhhhhhhcccCccCceEEEccchh--------------HHHHHHHHHHHcCCCCceEcCCChhhC
Confidence              12222223467889999999999998              999999999999999999999999998

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9e-21  Score=138.77  Aligned_cols=107  Identities=19%  Similarity=0.373  Sum_probs=81.5

Q ss_pred             cccceecHHHHHHHhhc------CCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCc
Q 030946           17 LQVRSVEAKEALRLQKE------NNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEEN   90 (168)
Q Consensus        17 ~~~~~i~~~~l~~~l~~------~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (168)
                      ..++.|+++++.+++++      ++++|||||++.||..||||||+|+|..+...+.                       
T Consensus        20 ~~~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~~~~~~~-----------------------   76 (161)
T d1c25a_          20 QDLKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEEEVEDF-----------------------   76 (161)
T ss_dssp             TTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHH-----------------------
T ss_pred             CCCCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcHHHHHHH-----------------------
Confidence            45788999999999974      2689999999999999999999999976654321                       


Q ss_pred             hHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHc----------CccceeEccccHHHHHhc
Q 030946           91 PEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLN----------GYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        91 ~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~----------G~~~v~~l~GG~~~w~~~  160 (168)
                        +.+........+...||+||..++             .|+..++..|+..          ||++|++|.|||.+|.+.
T Consensus        77 --l~~~~~~~~~~~~~~vV~yc~~s~-------------~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          77 --LLKKPIVPTDGKRVIVVFHCEFSS-------------ERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             --TTTSCCCCCTTSEEEEEEECSSSS-------------SHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             --HhhhhhhhhhccCCeEEEEecccc-------------ccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence              000001122334456999998544             2899999988754          999999999999999876


Q ss_pred             C
Q 030946          161 E  161 (168)
Q Consensus       161 g  161 (168)
                      .
T Consensus       142 ~  142 (161)
T d1c25a_         142 C  142 (161)
T ss_dssp             H
T ss_pred             C
Confidence            3

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.82  E-value=1.8e-21  Score=139.36  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=76.4

Q ss_pred             CCeEEEecCChhhhh-----------hcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhh--hhc
Q 030946           34 NNFVILDVRPEAEFK-----------EAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTG--VES  100 (168)
Q Consensus        34 ~~~~liDvR~~~e~~-----------~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  100 (168)
                      ++.+|||+|++.||.           .||||||+|+|+..++.....           ...+...+++.+.+...  ...
T Consensus        11 p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~   79 (139)
T d1okga2          11 PQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGD-----------GKVLRSEEEIRHNIMTVVQGAG   79 (139)
T ss_dssp             TTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSS-----------SCEECCHHHHHHHHHTTCC---
T ss_pred             CCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhcccccc-----------ccccCCHHHhhhhhhhhhhhcc
Confidence            489999999999997           799999999999765432110           00011111111111110  112


Q ss_pred             cCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHh-cCCCCCC
Q 030946          101 QLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFK-EELPEVS  166 (168)
Q Consensus       101 ~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~-~g~p~~~  166 (168)
                      .+.++++||+||++|.              ||+.+++.|+.+||++|++|+||+.+|.. .++|+++
T Consensus        80 ~~~~~~~vV~yC~sG~--------------~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~  132 (139)
T d1okga2          80 DAADLSSFVFSCGSGV--------------TACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMR  132 (139)
T ss_dssp             --CCCTTSEEECSSSS--------------THHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHH
T ss_pred             CCCCCCeEEEECCCcH--------------HHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeee
Confidence            4567789999999997              99999999999999999999999999965 5788764

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.9e-19  Score=126.13  Aligned_cols=119  Identities=14%  Similarity=0.118  Sum_probs=79.6

Q ss_pred             eecHHHHHHHhhcC--CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHhhh
Q 030946           21 SVEAKEALRLQKEN--NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQTGV   98 (168)
Q Consensus        21 ~i~~~~l~~~l~~~--~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (168)
                      .||++||.++++++  +++|||+|++.||..+|||||+|+|...+............              ....... .
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~--------------~~~~~~~-~   66 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAH--------------LPDDSKD-T   66 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHT--------------SCHHHHH-H
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhh--------------hhHHHHH-H
Confidence            68999999999864  69999999999999999999999999877543222111110              0111111 1


Q ss_pred             hccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHH-----HcCccceeEccccHHHHHhc
Q 030946           99 ESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLV-----LNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        99 ~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~-----~~G~~~v~~l~GG~~~w~~~  160 (168)
                      .......+.||+||..+..+.|...      .........|.     ..|..+|++|+|||.+|...
T Consensus        67 ~~~~~~~~~iV~yd~~s~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          67 WKKRGNVEYVVLLDWFSSAKDLQIG------TTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             HHTTTTSSEEEEECSSCCGGGCCTT------CHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             HhccCCCCeEEEEeCCCCcccHHHH------HHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            2334577899999999874332111      01122334443     34678899999999999987

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.6e-20  Score=135.06  Aligned_cols=108  Identities=21%  Similarity=0.333  Sum_probs=82.1

Q ss_pred             hcccceecHHHHHHHhhcC------CeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCC
Q 030946           16 LLQVRSVEAKEALRLQKEN------NFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEE   89 (168)
Q Consensus        16 ~~~~~~i~~~~l~~~l~~~------~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (168)
                      ...++.|++++|.++++++      +++|||||++.||..|||+||+|+|...+..+.....                  
T Consensus        19 ~~~~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~~~~~~~~~~~------------------   80 (174)
T d1ymka1          19 HQDLKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS------------------   80 (174)
T ss_dssp             STTSCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSHHHHHHHHHTT------------------
T ss_pred             cCCCcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCchHHHHHHHHHh------------------
Confidence            3557889999999999642      6899999999999999999999999987654321000                  


Q ss_pred             chHHHHhhhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHH----------cCccceeEccccHHHHHh
Q 030946           90 NPEFLQTGVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVL----------NGYKNVYHLEGGLYKWFK  159 (168)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~----------~G~~~v~~l~GG~~~w~~  159 (168)
                            ........+...||+||..++             .|+..++..|+.          .||++|++|.|||.+|.+
T Consensus        81 ------~~~~~~~~~~~~vV~yc~~s~-------------~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~  141 (174)
T d1ymka1          81 ------PIAPCSLDKRVILIFHCEFSS-------------ERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFP  141 (174)
T ss_dssp             ------TCCC----CEEEEEEECSSSS-------------SHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTT
T ss_pred             ------hhhhhhhccCceEEEEeCCCC-------------chHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHH
Confidence                  000112345567999998765             388889998875          499999999999999976


Q ss_pred             c
Q 030946          160 E  160 (168)
Q Consensus       160 ~  160 (168)
                      .
T Consensus       142 ~  142 (174)
T d1ymka1         142 Q  142 (174)
T ss_dssp             T
T ss_pred             h
Confidence            5

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=4.5e-18  Score=122.69  Aligned_cols=126  Identities=17%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             cceecHHHHHHHhh--cCCeEEEecCChhhhhhcCCCCcEEechhhHHhhhhHHHHHHHhhhhhccccCCCCCchHHHHh
Q 030946           19 VRSVEAKEALRLQK--ENNFVILDVRPEAEFKEAHPPGAINVQIYRLIKEWTAWDIARRAAFAFFGIFSGTEENPEFLQT   96 (168)
Q Consensus        19 ~~~i~~~~l~~~l~--~~~~~liDvR~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
                      -..+|++++.+.++  +++.+|||||++.||..||||||+|+|+.....+...        ..... +.......+... 
T Consensus        15 ~~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~-   84 (154)
T d1hzma_          15 AISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQ--------KGNLP-VRALFTRGEDRD-   84 (154)
T ss_dssp             SSBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBC--------CSCCC-TTTTSTTSHHHH-
T ss_pred             cCccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhcc--------CCccc-ccccCCcHHHHH-
Confidence            34589999999986  3479999999999999999999999998776533211        00000 001111111111 


Q ss_pred             hhhccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHHHHHhc
Q 030946           97 GVESQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLYKWFKE  160 (168)
Q Consensus        97 ~~~~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~~w~~~  160 (168)
                       ........+.||+||.++..++..    .....+...+...|...|+ +|++|+|||.+|++.
T Consensus        85 -~~~~~~~~~~VVvYd~~~~~~~~~----~~~~~~~~~l~~~l~~~~~-~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          85 -RFTRRCGTDTVVLYDESSSDWNEN----TGGESLLGLLLKKLKDEGC-RAFYLEGGFSKFQAE  142 (154)
T ss_dssp             -HHHHSTTSSCEEECCCSSSSSCSC----SSCCSHHHHHHHHHHHTTC-CCEECCCCHHHHHHH
T ss_pred             -HHhhcCCCCeEEEEcCCCchhhhh----HHHHHHHHHHHHHHHhcCC-eEEEEeCcHHHHHHH
Confidence             223456778999999987643211    1111243444555555565 799999999999876

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.71  E-value=0.072  Score=39.69  Aligned_cols=35  Identities=14%  Similarity=0.187  Sum_probs=26.8

Q ss_pred             hhhcccceecHHHHHHHhhcCCeEEEecCChhhhh
Q 030946           14 FYLLQVRSVEAKEALRLQKENNFVILDVRPEAEFK   48 (168)
Q Consensus        14 ~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~   48 (168)
                      +-+..+..+++++...+-+-+=..|||.|+..|..
T Consensus        25 ~RS~~l~~lt~~d~~~L~~lgI~tViDLRs~~E~~   59 (272)
T d1ywfa1          25 FRSSELSRLDDAGRATLRRLGITDVADLRSSREVA   59 (272)
T ss_dssp             EEESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHH
T ss_pred             EecCCcCcCCHHHHHHHHHCCCcEEEECCCHHHHh
Confidence            34566778999998766544557899999999975

>d1jl3a_ c.44.1.1 (A:) Arsenate reductase ArsC {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Bacillus subtilis [TaxId: 1423]

Probab=88.76  E-value=0.19  Score=33.11  Aligned_cols=38  Identities=16%  Similarity=0.059  Sum_probs=31.9

Q ss_pred             CCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946          105 DAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  155 (168)
Q Consensus       105 ~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~  155 (168)
                      +++|+|+|.+..|             ||..|...|+..+-.++.+..+|..
T Consensus         1 ~K~ILFVC~gN~c-------------RSpmAEai~~~~~~~~~~~~Sag~~   38 (137)
T d1jl3a_           1 NKIIYFLCTGNSC-------------RSQMAEGWAKQYLGDEWKVYSAGIE   38 (137)
T ss_dssp             CEEEEEEESSSSS-------------HHHHHHHHHHHHSCTTEEEEEEESS
T ss_pred             CCEEEEEeCCChh-------------HHHHHHHHHHHhCCCCeeecccccc
Confidence            4689999999886             9999999999987777778777764

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.19  E-value=0.32  Score=32.51  Aligned_cols=26  Identities=19%  Similarity=0.011  Sum_probs=18.3

Q ss_pred             ecHHHHHHHhhcCCeEEEecCChhhh
Q 030946           22 VEAKEALRLQKENNFVILDVRPEAEF   47 (168)
Q Consensus        22 i~~~~l~~~l~~~~~~liDvR~~~e~   47 (168)
                      .+++++..+.+.+=..|||+|+..|.
T Consensus        21 ~t~~~~~~L~~lgIktIidLr~~~e~   46 (151)
T d1xria_          21 PDSANFSFLQTLGLRSIIYLCPEPYP   46 (151)
T ss_dssp             CCHHHHHHHHHHTCSEEEECCSSCCC
T ss_pred             CCHHHHHHHHHCCCCEEEECCCcchh
Confidence            56777765555556789999986553

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=85.66  E-value=0.19  Score=35.14  Aligned_cols=39  Identities=18%  Similarity=0.126  Sum_probs=34.3

Q ss_pred             CCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946          102 LDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  155 (168)
Q Consensus       102 ~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~  155 (168)
                      ..++.++++||.+-.              .+...+..|.+.|++ +..|.|++.
T Consensus        28 ~~~g~r~lvfc~t~~--------------~~~~l~~~L~~~Gi~-a~~~Hg~~~   66 (174)
T d1c4oa2          28 AARGERTLVTVLTVR--------------MAEELTSFLVEHGIR-ARYLHHELD   66 (174)
T ss_dssp             HHTTCEEEEECSSHH--------------HHHHHHHHHHHTTCC-EEEECTTCC
T ss_pred             HhcCCcEEEEEcchh--------------HHHHHHHHHHhcCCc-eEEEecccc
Confidence            457789999999987              899999999999995 889999874

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.22  E-value=0.39  Score=31.96  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=31.1

Q ss_pred             CCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946          104 KDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  155 (168)
Q Consensus       104 ~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~  155 (168)
                      +..+.++||++-.              .+..++..|...|++ +..+.+|+.
T Consensus        34 ~~~k~IVFc~t~~--------------~ae~la~~L~~~G~~-~~~~H~~~~   70 (138)
T d1jr6a_          34 KGGRHLIFCHSKK--------------KCDELAAKLVALGIN-AVAYYRGLD   70 (138)
T ss_dssp             TTSCEEEECSCHH--------------HHHHHHHHHHHHTCE-EEEECTTCC
T ss_pred             CCCCEEEEeCcHH--------------HHHHHHHHHhccccc-hhhhhccch
Confidence            5567899999987              899999999999995 777777754

>d1jf8a_ c.44.1.1 (A:) Arsenate reductase ArsC {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Phosphotyrosine protein phosphatases I-like
superfamily: Phosphotyrosine protein phosphatases I
family: Low-molecular-weight phosphotyrosine protein phosphatases
domain: Arsenate reductase ArsC
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.51  E-value=0.95  Score=29.27  Aligned_cols=37  Identities=14%  Similarity=-0.072  Sum_probs=29.0

Q ss_pred             CeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEccccHH
Q 030946          106 AKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGGLY  155 (168)
Q Consensus       106 ~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG~~  155 (168)
                      ++|+|+|.+..|             ||..|...++..+-.++.+.-.|..
T Consensus         3 ~~vlFvC~~N~c-------------RS~mAEa~~~~~~~~~~~v~SAG~~   39 (130)
T d1jf8a_           3 KTIYFISTGNSA-------------RSQMAEGWGKEILGEGWNVYSAGIE   39 (130)
T ss_dssp             EEEEEEESSSSS-------------HHHHHHHHHHHHSTTTEEEEEEESS
T ss_pred             CEEEEEeCCCcH-------------HHHHHHHHHHhcCCccceecccccc
Confidence            589999999886             9999988888876556777666653

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=80.09  E-value=1.7  Score=29.27  Aligned_cols=39  Identities=21%  Similarity=0.267  Sum_probs=30.4

Q ss_pred             ccCCCCCeEEEEeCCCCCCCCCCCCCCCccchHHHHHHHHHHcCccceeEcccc
Q 030946          100 SQLDKDAKIIVACATGGTMKPSQNLPEGQQSRSLIAAYLLVLNGYKNVYHLEGG  153 (168)
Q Consensus       100 ~~~~~~~~iV~yc~~g~~~~~~~~~~~~~~~rs~~a~~~L~~~G~~~v~~l~GG  153 (168)
                      ..++++++|+++..+|.               +..+...|.+.|+++++++.--
T Consensus        12 ~~~~~~~~vlIlGaGGa---------------arai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          12 YHLNKNAKVIVHGSGGM---------------AKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TTCCTTSCEEEECSSTT---------------HHHHHHHHHHTTCCCEEEECSC
T ss_pred             cCCCCCCeEEEECCCHH---------------HHHHHHHHHHCCCCEEEEeccc
Confidence            45667889999987764               5558889999999889887543