Citrus Sinensis ID: 030965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEEEcccccccccccccccccccccccEEEEEEEEcccccccccccccccEEEEcccEEEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEccccEEEEEEccccccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHccccccccEEEEccEEEEccccccccEEccccEEEEcccccccEEEEEEEcccccccccccccccEEEEEccccEEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEcccccEEEEEcccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
mmpgrtgfdfngasrSFNVLAEYLfgkntkretmemttpvitrktqsdgekmemttPVISKkledqdkwqmsfvmpskyganlplpkdpsvrikevpKKVVAVVAFSgfvtdedvKRRELKLRDALkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Flexible Loop (DISEMBL)
mmpgrtgfdfngasrsfNVLAEYlfgkntkretmemttpvitrktqsdgekmeMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVafsgfvtdedvkrrelklrdalkgdrqfrvkegasvevaqynppftlpftrrNEIALEVERKEE
Low Complexity Region (SEG)
MMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEvpkkvvavvaFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered region (IsUnstruct)
*************SRSFNVLAEYLFGK*********************************************FV****************VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKG*RQFRVKEGASVEVAQYNPPFTLPFTR*************
Disordered Region (DISOPRED)
****************FNVLAEYLFGKNTKRETMEMTTPVITRKTQ*************SKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK**
Disordered Region (DISEMBL)
MMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Disordered Region (DISPRO)
************ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9SR77	309	Heme-binding-like protein	yes	no	1.0	0.543	0.738	3e-67
Q5ISC6	189	Heme-binding protein 1 OS	yes	no	0.732	0.650	0.3	8e-09
Q6NU05	190	Heme-binding protein 1 OS	N/A	no	0.732	0.647	0.264	1e-08
Q6DJ66	190	Heme-binding protein 1 OS	yes	no	0.732	0.647	0.257	3e-08
Q9NRV9	189	Heme-binding protein 1 OS	yes	no	0.672	0.597	0.311	7e-08
Q9R257	190	Heme-binding protein 1 OS	yes	no	0.678	0.6	0.303	7e-07
Q5ZMB2	189	Heme-binding protein 1 OS	yes	no	0.809	0.719	0.288	8e-07
Q148C9	191	Heme-binding protein 1 OS	no	no	0.744	0.654	0.260	0.0004

>sp|Q9SR77|HBPL1_ARATH Heme-binding-like protein At3g10130, chloroplastic OS=Arabidopsis thaliana GN=At3g10130 PE=1 SV=1

 Score =  254 bits (648), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 152/168 (90%)

Query: 1   MMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVIS 60
           +MPG TGFD  GAS+SFNVLAEYLFGKNT +E MEMTTPV+TRK QS GEKMEMTTPVI+
Sbjct: 142 IMPGETGFDSYGASKSFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVIT 201

Query: 61  KKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRREL 120
            K +DQ++W+MSFVMPSKYG+NLPLPKDPSV+I++VP+K+VAVVAFSG+VTDE+++RRE 
Sbjct: 202 SKAKDQNQWRMSFVMPSKYGSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRER 261

Query: 121 KLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 168
           +LR AL+ D++FRV++G S EVAQYNPPFTLPF RRNE++LEVE KE+
Sbjct: 262 ELRRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVENKED 309

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ISC6|HEBP1_PIG Heme-binding protein 1 OS=Sus scrofa GN=HEBP1 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 17/140 (12%)

Query: 22  EYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGA 81
           +Y+ G N K   M MT P+      SDG  +             Q K ++ F +P+++ +
Sbjct: 64  KYVGGSNDKGIGMGMTVPISFAVFPSDGGSL-------------QKKLKVWFRIPNEFQS 110

Query: 82  NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVE 141
           N P+P D S++I+E     V  + F G+  + D   R  +LR AL+G    R        
Sbjct: 111 NPPVPSDDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCRSD---VYF 167

Query: 142 VAQYNPPFTLPFTRRNEIAL 161
              Y+PP   P+ RRNE+ L
Sbjct: 168 CTGYDPPMK-PYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Sus scrofa (taxid: 9823)

>sp|Q6NU05|HEBP1_XENLA Heme-binding protein 1 OS=Xenopus laevis GN=hebp1 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%)

Query: 20  LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 79
           L +Y+ G N K   M MT+PVI     S+ + ++    V+ +             +PS+Y
Sbjct: 62  LLKYVGGSNNKSAGMGMTSPVIINSYPSENDTLQPNVKVLLR-------------IPSQY 108

Query: 80  GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 139
            A+ P+P D +++I++     +    F G+  + D      KLR  L  D  +       
Sbjct: 109 QADPPVPTDNTIQIEDRESVTLYSTQFGGYAKEADYVSHAAKLRSCLGPDISYHSD---Y 165

Query: 140 VEVAQYNPPFTLPFTRRNEI 159
                Y+PP   P+ RRNE+
Sbjct: 166 YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus laevis (taxid: 8355)

>sp|Q6DJ66|HEBP1_XENTR Heme-binding protein 1 OS=Xenopus tropicalis GN=hebp1 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 20  LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 79
           L +Y+ G N K   M MT+PV+     ++ E ++    V+ +             +PS+Y
Sbjct: 62  LLKYVGGSNQKYAGMGMTSPVVITSYPAENETLQPNVKVLLR-------------IPSQY 108

Query: 80  GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 139
            A+ P+P D ++ I++          F G+  + D      KLR  L  D  +       
Sbjct: 109 QADPPVPTDDTIHIEDRESVTFYSTQFGGYAKEADYVSHAAKLRSCLGPDISYHTDH--- 165

Query: 140 VEVAQYNPPFTLPFTRRNEI 159
                Y+PP   P+ RRNE+
Sbjct: 166 YMCCGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Xenopus tropicalis (taxid: 8364)

>sp|Q9NRV9|HEBP1_HUMAN Heme-binding protein 1 OS=Homo sapiens GN=HEBP1 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 9/122 (7%)

Query: 45  TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKK 99
           T   G  M MT P+      ++D     K ++ F +P+++ ++ P P D SV+I+E    
Sbjct: 69  TNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVWFRIPNQFQSDPPAPSDKSVKIEEREGI 128

Query: 100 VVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
            V  + F G+  + D   +  +LR AL+G   +R   G       Y+PP   P+ RRNEI
Sbjct: 129 TVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GDIYFCTGYDPPMK-PYGRRNEI 184

Query: 160 AL 161
            L
Sbjct: 185 WL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Homo sapiens (taxid: 9606)

>sp|Q9R257|HEBP1_MOUSE Heme-binding protein 1 OS=Mus musculus GN=Hebp1 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 45  TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKK 99
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 69  TNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 128

Query: 100 VVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
            V    F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 129 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 185

Query: 160 AL 161
            L
Sbjct: 186 WL 187

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Mus musculus (taxid: 10090)

>sp|Q5ZMB2|HEBP1_CHICK Heme-binding protein 1 OS=Gallus gallus GN=HEBP1 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 20/156 (12%)

Query: 6   TGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKL 63
           TG  F+ AS+   + L +Y+ G N K   M MT PV IT     DG              
Sbjct: 47  TGKPFDEASKEAALKLLKYVGGSNDKGAGMGMTAPVSITAFPAEDGSL------------ 94

Query: 64  EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR 123
             Q K ++   +P+++ A+ P P D S++I+E     +    F G+  + D      KL+
Sbjct: 95  --QQKVKVYLRIPNQFQASPPCPSDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLK 152

Query: 124 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
            AL  +  +R           Y+PP   P+ RRNE+
Sbjct: 153 TALGSEAAYRKD---FYFCNGYDPPMK-PYGRRNEV 184

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Gallus gallus (taxid: 9031)

>sp|Q148C9|HEBP1_BOVIN Heme-binding protein 1 OS=Bos taurus GN=HEBP1 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 17/142 (11%)

Query: 20  LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKY 79
           + +Y+ G N K   M MT P+      SD   +             Q K ++ F +P+K+
Sbjct: 62  VMKYVGGSNDKGLGMGMTVPISFAVFPSDDGDL-------------QKKLKVWFRIPNKF 108

Query: 80  GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGAS 139
            ++ P P D S++I++     V    F G+    D   +  +LR AL+   +++      
Sbjct: 109 QSDPPAPSDDSIKIEDREGITVYSTQFGGYAKAADYAAQAAQLRSALESTAKYQTD---F 165

Query: 140 VEVAQYNPPFTLPFTRRNEIAL 161
                Y+PP   P+ RRNE+ L
Sbjct: 166 YFCTGYDPPMK-PYGRRNEVWL 186

May bind free porphyrinogens that may be present in the cell and thus facilitate removal of these potentially toxic compound. Binds with a high affinity to one molecule of heme or porphyrins. It binds metalloporphyrins, free porphyrins and N-methylprotoporphyrin with similar affinities.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
225440878	285	PREDICTED: heme-binding-like protein At3	0.988	0.582	0.825	3e-77
297740118	252	unnamed protein product [Vitis vinifera]	0.988	0.658	0.825	4e-77
147794498	252	hypothetical protein VITISV_021815 [Viti	0.988	0.658	0.819	2e-76
356572562	303	PREDICTED: heme-binding-like protein At3	0.982	0.544	0.806	3e-75
255575711	297	protein with unknown function [Ricinus c	0.994	0.562	0.856	1e-73
297829544	317	soul heme-binding family protein [Arabid	0.994	0.526	0.754	1e-71
357511075	296	Heme-binding-like protein [Medicago trun	0.982	0.557	0.763	4e-70
356503813	304	PREDICTED: heme-binding-like protein At3	0.982	0.542	0.759	9e-70
449462962	305	PREDICTED: heme-binding-like protein At3	0.988	0.544	0.716	6e-68
125582380	196	hypothetical protein OsJ_07008 [Oryza sa	0.976	0.836	0.737	1e-67

>gi|225440878|ref|XP_002282544.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Vitis vinifera]

 Score =  292 bits (747), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 155/166 (93%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG+ GFDFNG+S+SFNVLAEYLFGKNT +E MEMTTPV TR+ QSDG+KMEMTTPVI+K
Sbjct: 119 MPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEMTTPVFTRRDQSDGKKMEMTTPVITK 178

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           KL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE K
Sbjct: 179 KLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESK 238

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 167
           LR AL+ D+QF+VKEGA VEVAQYNPPFTLPFTRRNE+ALEVERK+
Sbjct: 239 LRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFTRRNEVALEVERKQ 284

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740118|emb|CBI30300.3| unnamed protein product [Vitis vinifera]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 137/166 (82%), Positives = 155/166 (93%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG+ GFDFNG+S+SFNVLAEYLFGKNT +E MEMTTPV TR+ QSDG+KMEMTTPVI+K
Sbjct: 86  MPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEMTTPVFTRRDQSDGKKMEMTTPVITK 145

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           KL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE K
Sbjct: 146 KLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESK 205

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 167
           LR AL+ D+QF+VKEGA VEVAQYNPPFTLPFTRRNE+ALEVERK+
Sbjct: 206 LRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFTRRNEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794498|emb|CAN62765.1| hypothetical protein VITISV_021815 [Vitis vinifera]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 153/166 (92%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG+ GFDFNG+S+SFNVLAEYLFGKNT +E MEMTTPV TR+ QSDG KMEMTTPVI+K
Sbjct: 86  MPGKNGFDFNGSSQSFNVLAEYLFGKNTTKERMEMTTPVFTRRDQSDGXKMEMTTPVITK 145

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           KL+DQDKWQMSFVMP+KYGA+LPLPKD SVRIKEVP+K+VAVVAFSGFVTDE+VK RE K
Sbjct: 146 KLQDQDKWQMSFVMPAKYGADLPLPKDQSVRIKEVPRKIVAVVAFSGFVTDEEVKLRESK 205

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 167
           LR AL+ D+QF+VKEGA VEVAQYNPPFTLPF RRNE+ALEVERK+
Sbjct: 206 LRSALRNDKQFQVKEGAPVEVAQYNPPFTLPFARRNEVALEVERKQ 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572562|ref|XP_003554437.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  286 bits (731), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 148/165 (89%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG++GFDFNGASRSFN LAEYLFGKNT +E MEMTTPV T K QSDG KM+MTTPV++ 
Sbjct: 137 MPGKSGFDFNGASRSFNALAEYLFGKNTTKEKMEMTTPVFTSKNQSDGVKMDMTTPVLTT 196

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           K+EDQD W+MSFVMPSKYGANLPLPKD SVRIKEVP+K+VAVV+FSGFV DE++K+RELK
Sbjct: 197 KMEDQDNWKMSFVMPSKYGANLPLPKDSSVRIKEVPRKIVAVVSFSGFVNDEEIKQRELK 256

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 166
           LRDALK D QF +KEG SVEVAQYNPPFTLPF RRNEIALEVE K
Sbjct: 257 LRDALKSDSQFEIKEGTSVEVAQYNPPFTLPFQRRNEIALEVEWK 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575711|ref|XP_002528755.1| protein with unknown function [Ricinus communis] gi|223531849|gb|EEF33667.1| protein with unknown function [Ricinus communis]

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 143/167 (85%), Positives = 157/167 (94%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG+TGFD NGAS+SFNVLAEYLFGKN  +E MEMTTPV TRK QSDGEKMEMTTPVI+K
Sbjct: 131 MPGKTGFDLNGASQSFNVLAEYLFGKNVTKEKMEMTTPVFTRKVQSDGEKMEMTTPVITK 190

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           K+EDQDKWQMSFVMPSKYGA+LPLPKD +V+IKEVPKKVVAVVAFSGFVTDEDVK+RELK
Sbjct: 191 KVEDQDKWQMSFVMPSKYGADLPLPKDKTVKIKEVPKKVVAVVAFSGFVTDEDVKQRELK 250

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 168
           LR+ALK D  FRVK+GAS+EVAQYNPPFTLPFTRRNEIA+E+ERKEE
Sbjct: 251 LRNALKNDPLFRVKKGASMEVAQYNPPFTLPFTRRNEIAIEIERKEE 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829544|ref|XP_002882654.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata] gi|297328494|gb|EFH58913.1| soul heme-binding family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  273 bits (699), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/167 (75%), Positives = 151/167 (90%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG TGFDF GAS+SFNVLAEYLFGKNT++E MEMTTPV+TRK QS GEKMEMTTPVI+ 
Sbjct: 151 MPGETGFDFYGASKSFNVLAEYLFGKNTRKEKMEMTTPVVTRKAQSVGEKMEMTTPVITT 210

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           K +DQ +W+MSFVMPSKYG+NLPLPKD SV+I EVP+K+VAVVAFSG+VTDE+++RRE +
Sbjct: 211 KAKDQTQWRMSFVMPSKYGSNLPLPKDSSVKILEVPRKIVAVVAFSGYVTDEEIERREQE 270

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 168
           LR AL+ D++FRV++G SVEVAQYNPPFTLPF RRNE++LEVE KE+
Sbjct: 271 LRRALQNDKKFRVRDGVSVEVAQYNPPFTLPFMRRNEVSLEVESKED 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511075|ref|XP_003625826.1| Heme-binding-like protein [Medicago truncatula] gi|355500841|gb|AES82044.1| Heme-binding-like protein [Medicago truncatula]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 126/165 (76%), Positives = 145/165 (87%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG++GFDF G+S+SFNVLAEYLFGKNTK+E MEMTTPV T K QSDG KM+MTTPV++ 
Sbjct: 130 MPGKSGFDFRGSSQSFNVLAEYLFGKNTKKEKMEMTTPVFTTKKQSDGVKMDMTTPVLTT 189

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           K  D+D+W+MSFVMPSKYGANLPLPKD SV IKEV +K VAVV+FSGFV DE+VKRRELK
Sbjct: 190 KTVDKDEWKMSFVMPSKYGANLPLPKDSSVAIKEVARKTVAVVSFSGFVNDEEVKRRELK 249

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 166
           LR+ALK D QF++KEG S+E+AQYNPPF LPF RRNEIALEVE K
Sbjct: 250 LREALKNDGQFKIKEGTSIEIAQYNPPFALPFQRRNEIALEVEWK 294

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503813|ref|XP_003520697.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Glycine max]

 Score =  267 bits (683), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 126/166 (75%), Positives = 145/166 (87%), Gaps = 1/166 (0%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG++GFDFNGASRSFNVLAEY FGKNT +E MEM TPV T K QSDG KM+MTTPV++ 
Sbjct: 137 MPGKSGFDFNGASRSFNVLAEYHFGKNTTKEKMEMNTPVFTSKNQSDGVKMDMTTPVLTT 196

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSG-FVTDEDVKRREL 120
           K+EDQD W+MSFVMPSKYGANLPL KD SVRIKEVP+K++ VV+FSG FV DE++K+REL
Sbjct: 197 KMEDQDNWKMSFVMPSKYGANLPLAKDSSVRIKEVPRKIIDVVSFSGVFVNDEEIKQREL 256

Query: 121 KLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERK 166
           KL+DALK D QF++KEG SVEVA+YNPPFTLPF  RNEIALEVE K
Sbjct: 257 KLQDALKSDSQFKIKEGTSVEVARYNPPFTLPFQCRNEIALEVEWK 302

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462962|ref|XP_004149204.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus] gi|449500911|ref|XP_004161228.1| PREDICTED: heme-binding-like protein At3g10130, chloroplastic-like [Cucumis sativus]

 Score =  261 bits (668), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 119/166 (71%), Positives = 148/166 (89%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPG++GFDF GAS+SFNVLA YLFGKN  RE MEMTTPV+T + +SDGEKM+ TTPVI+K
Sbjct: 139 MPGKSGFDFGGASQSFNVLAAYLFGKNKAREKMEMTTPVLTSQYKSDGEKMDTTTPVITK 198

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
            ++ +D+W+MSFV+PSKYG N P+P+D SVRI+EVP+K++AVVAFSGFVTD++VK+RE +
Sbjct: 199 NVDGKDQWKMSFVIPSKYGQNFPVPQDTSVRIQEVPRKILAVVAFSGFVTDDEVKKRESR 258

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKE 167
           LRDALK D++F+VK G+ VEVAQYNPPFTLPF RRNEIALEVE+KE
Sbjct: 259 LRDALKNDKEFQVKAGSFVEVAQYNPPFTLPFQRRNEIALEVEKKE 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125582380|gb|EAZ23311.1| hypothetical protein OsJ_07008 [Oryza sativa Japonica Group]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 143/164 (87%)

Query: 2   MPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISK 61
           MPGR+GFDFNG+S+SFNVLA YLFGKNT  E MEMTTPV TRK + DGEKM+MTTPVI+K
Sbjct: 28  MPGRSGFDFNGSSQSFNVLASYLFGKNTTSEQMEMTTPVFTRKGEPDGEKMDMTTPVITK 87

Query: 62  KLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELK 121
           K  +++KW+MSFVMPSKYG +LPLPKDPSV IKEVP K+VAV AFSG VTD+D+ +RE +
Sbjct: 88  KSANENKWKMSFVMPSKYGPDLPLPKDPSVTIKEVPAKIVAVAAFSGLVTDDDISQRESR 147

Query: 122 LRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER 165
           LR+ L+ D QFRVK+ + VE+AQYNPPFTLPFTRRNEIALEV+R
Sbjct: 148 LRETLQKDSQFRVKDDSVVEIAQYNPPFTLPFTRRNEIALEVKR 191

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2100043	309	AT3G10130 "AT3G10130" [Arabido	1.0	0.543	0.690	7.1e-61
TAIR|locus:2065578	225	SOUL-1 [Arabidopsis thaliana (	0.863	0.644	0.371	6e-16
ZFIN|ZDB-GENE-040426-914	190	hebp2 "heme binding protein 2"	0.833	0.736	0.337	2e-10
UNIPROTKB|Q5ISC6	189	HEBP1 "Heme-binding protein 1"	0.726	0.645	0.312	2.2e-09
UNIPROTKB|Q6DJ66	190	hebp1 "Heme-binding protein 1"	0.815	0.721	0.258	7.6e-09
UNIPROTKB|Q6NU05	190	hebp1 "Heme-binding protein 1"	0.815	0.721	0.264	7.6e-09
UNIPROTKB|Q9NRV9	189	HEBP1 "Heme-binding protein 1"	0.672	0.597	0.303	1.2e-08
UNIPROTKB|F1NMB9	189	HEBP1 "Heme-binding protein 1"	0.809	0.719	0.294	1.6e-08
UNIPROTKB|Q5ZMB2	189	HEBP1 "Heme-binding protein 1"	0.809	0.719	0.294	2e-08
MGI|MGI:1333880	190	Hebp1 "heme binding protein 1"	0.678	0.6	0.295	5.3e-08

TAIR|locus:2100043 AT3G10130 "AT3G10130" [Arabidopsis thaliana (taxid:3702)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 116/168 (69%), Positives = 142/168 (84%)

Query:     1 MMPGRTGFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVIS 60
             +MPG TGFD  GAS+SFNVLAEYLFGKNT +E MEMTTPV+TRK QS GEKMEMTTPVI+
Sbjct:   142 IMPGETGFDSYGASKSFNVLAEYLFGKNTIKEKMEMTTPVVTRKVQSVGEKMEMTTPVIT 201

Query:    61 KKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRREL 120
              K +DQ++W+MSFVMPSKYG+NLPLPKDPSV+I++          FSG+VTDE+++RRE 
Sbjct:   202 SKAKDQNQWRMSFVMPSKYGSNLPLPKDPSVKIQQVPRKIVAVVAFSGYVTDEEIERRER 261

Query:   121 KLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 168
             +LR AL+ D++FRV++G S EVAQYNPPFTLPF RRNE++LEVE KE+
Sbjct:   262 ELRRALQNDKKFRVRDGVSFEVAQYNPPFTLPFMRRNEVSLEVENKED 309

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2065578 SOUL-1 [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 62/167 (37%), Positives = 89/167 (53%)

Query:    17 FNVLAEYL--FGK--NTKRETMEMTTPVITRKTQS----------DGEKMEMTTPVISKK 62
             F +LA+Y+  FGK  N K E + MT PVIT++ +           + EK+EMT+PV++K+
Sbjct:    62 FQLLAKYIGVFGKPENEKPEKIAMTAPVITKEGEKIAMTAPVITKESEKIEMTSPVVTKE 121

Query:    63 L--EDQDKW-QMSFVMPSKY--GANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKR 117
                E + K   M F++PS Y      P P D  V IKE          FSG  ++  V  
Sbjct:   122 GGGEGRKKLVTMQFLLPSMYKKAEEAPRPTDERVVIKEEGGRKYGVIKFSGIASESVVSE 181

Query:   118 RELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE 164
             +  KL   L+ D  F++  G  V +A+YNPP+TLP  R NE+ + VE
Sbjct:   182 KVKKLSSHLEKDG-FKIT-GDFV-LARYNPPWTLPPFRTNEVMIPVE 225

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0010017 "red or far-red light signaling pathway" evidence=IMP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

ZFIN|ZDB-GENE-040426-914 hebp2 "heme binding protein 2" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 53/157 (33%), Positives = 69/157 (43%)

Query:     6 TGFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 64
             TG + + A S  F  L +Y+ G N K+  +EMTTPV        G   E T  V      
Sbjct:    45 TGMEQDQAMSTGFRRLFKYIQGSNEKKSKVEMTTPVSCLIDPGAGPACESTFTV------ 98

Query:    65 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRD 124
                    SF +P ++ A+ P P DP V I+           F GF   E      LKL +
Sbjct:    99 -------SFYIPEEHQADPPKPTDPDVFIESRKELTAFVRTFGGFANSESCCEEILKLIE 151

Query:   125 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
             +LK D   + KE A    A Y+ PF L   RRNE+ L
Sbjct:   152 SLKRDGM-KFKE-APYYRAGYDSPFKLT-GRRNEVWL 185

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ISC6 HEBP1 "Heme-binding protein 1" [Sus scrofa (taxid:9823)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 44/141 (31%), Positives = 67/141 (47%)

Query:    22 EYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGA 81
             +Y+ G N K   M MT P+      SDG  ++       KKL+    W   F +P+++ +
Sbjct:    64 KYVGGSNDKGIGMGMTVPISFAVFPSDGGSLQ-------KKLK---VW---FRIPNEFQS 110

Query:    82 NLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVE 141
             N P+P D S++I+E          F G+  + D   R  +LR AL+G    R    + V 
Sbjct:   111 NPPVPSDDSIKIEERESITVYSLQFGGYAKEADYVARAAQLRTALEGIATCR----SDVY 166

Query:   142 VAQ-YNPPFTLPFTRRNEIAL 161
                 Y+PP   P+ RRNE+ L
Sbjct:   167 FCTGYDPPMK-PYGRRNEVWL 186

GO:0020037 "heme binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q6DJ66 hebp1 "Heme-binding protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 40/155 (25%), Positives = 68/155 (43%)

Query:     6 TGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 64
             +G  F+ AS+   + L +Y+ G N K   M MT+PV+     ++ E ++    V+ +   
Sbjct:    47 SGKPFDEASKEAVLRLLKYVGGSNQKYAGMGMTSPVVITSYPAENETLQPNVKVLLR--- 103

Query:    65 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRD 124
                       +PS+Y A+ P+P D ++ I++          F G+  + D      KLR 
Sbjct:   104 ----------IPSQYQADPPVPTDDTIHIEDRESVTFYSTQFGGYAKEADYVSHAAKLRS 153

Query:   125 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
              L  D  +            Y+PP   P+ RRNE+
Sbjct:   154 CLGPDISYHTDH---YMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q6NU05 hebp1 "Heme-binding protein 1" [Xenopus laevis (taxid:8355)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 41/155 (26%), Positives = 69/155 (44%)

Query:     6 TGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 64
             +G  F+ AS+   + L +Y+ G N K   M MT+PVI     S+ + ++    V+ +   
Sbjct:    47 SGKPFDEASKEGVLRLLKYVGGSNNKSAGMGMTSPVIINSYPSENDTLQPNVKVLLR--- 103

Query:    65 DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLRD 124
                       +PS+Y A+ P+P D +++I++          F G+  + D      KLR 
Sbjct:   104 ----------IPSQYQADPPVPTDNTIQIEDRESVTLYSTQFGGYAKEADYVSHAAKLRS 153

Query:   125 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
              L  D  +            Y+PP   P+ RRNE+
Sbjct:   154 CLGPDISYH---SDYYMCCGYDPPMK-PYGRRNEV 184

GO:0020037 "heme binding" evidence=ISS

UNIPROTKB|Q9NRV9 HEBP1 "Heme-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/122 (30%), Positives = 58/122 (47%)

Query:    45 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
             T   G  M MT P+      ++D     K ++ F +P+++ ++ P P D SV+I+E    
Sbjct:    69 TNDKGIGMGMTVPISFAVFPNEDGSLQKKLKVWFRIPNQFQSDPPAPSDKSVKIEEREGI 128

Query:   100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
                   F G+  + D   +  +LR AL+G   +R   G       Y+PP   P+ RRNEI
Sbjct:   129 TVYSMQFGGYAKEADYVAQATRLRAALEGTATYR---GDIYFCTGYDPPMK-PYGRRNEI 184

Query:   160 AL 161
              L
Sbjct:   185 WL 186

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

GO:0007623 "circadian rhythm" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

UNIPROTKB|F1NMB9 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 46/156 (29%), Positives = 71/156 (45%)

Query:     6 TGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKL 63
             TG  F+ AS+   + L +Y+ G N K   M MT PV IT    +DG              
Sbjct:    47 TGKPFDEASKEAALKLLKYVGGSNDKGTGMGMTAPVSITAFPAADGSL------------ 94

Query:    64 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLR 123
               Q K ++   +P+++ A+ P P D S++I+E          F G+  + D      KL+
Sbjct:    95 --QQKVKVYLRIPNQFQASPPCPSDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLK 152

Query:   124 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
              AL  +  +R K+        Y+PP   P+ RRNE+
Sbjct:   153 TALGSEAAYR-KDFYFCN--GYDPPMK-PYGRRNEV 184

GO:0005739 "mitochondrion" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0020037 "heme binding" evidence=IEA

UNIPROTKB|Q5ZMB2 HEBP1 "Heme-binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 46/156 (29%), Positives = 70/156 (44%)

Query:     6 TGFDFNGASRSFNV-LAEYLFGKNTKRETMEMTTPV-ITRKTQSDGEKMEMTTPVISKKL 63
             TG  F+ AS+   + L +Y+ G N K   M MT PV IT     DG              
Sbjct:    47 TGKPFDEASKEAALKLLKYVGGSNDKGAGMGMTAPVSITAFPAEDGSL------------ 94

Query:    64 EDQDKWQMSFVMPSKYGANLPLPKDPSVRIKEXXXXXXXXXXFSGFVTDEDVKRRELKLR 123
               Q K ++   +P+++ A+ P P D S++I+E          F G+  + D      KL+
Sbjct:    95 --QQKVKVYLRIPNQFQASPPCPSDESIKIEERQGMTIYSTQFGGYAKEVDYVNYAAKLK 152

Query:   124 DALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
              AL  +  +R K+        Y+PP   P+ RRNE+
Sbjct:   153 TALGSEAAYR-KDFYFCN--GYDPPMK-PYGRRNEV 184

GO:0005737 "cytoplasm" evidence=IEA

GO:0020037 "heme binding" evidence=ISS

MGI|MGI:1333880 Hebp1 "heme binding protein 1" [Mus musculus (taxid:10090)]

 Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
 Identities = 36/122 (29%), Positives = 55/122 (45%)

Query:    45 TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
             T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct:    69 TNDKGVGMGMTVPVSFALFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 128

Query:   100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
                   F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct:   129 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 185

Query:   160 AL 161
              L
Sbjct:   186 WL 187

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0020037 "heme binding" evidence=IDA

GO:0042168 "heme metabolic process" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SR77	HBPL1_ARATH	No assigned EC number	0.7380	1.0	0.5436	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021606001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (252 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam04832	174	pfam04832, SOUL, SOUL heme-binding protein	3e-50

>gnl|CDD|218284 pfam04832, SOUL, SOUL heme-binding protein

 Score =  158 bits (403), Expect = 3e-50
 Identities = 63/155 (40%), Positives = 83/155 (53%), Gaps = 17/155 (10%)

Query: 9   DFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQD 67
             + AS   F  LA Y+FGKN   E + MT PV+        + + MT        E   
Sbjct: 35  SRDEASGEGFRRLAGYIFGKNRSGEKIAMTAPVLQ-------QAIPMTADE-----EGSG 82

Query: 68  KWQMSFVMPSKY-GANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL 126
            W +SFVMPS Y    LP P DP VRI+EVP + VAV+ FSG  ++EDV  +  +LR  L
Sbjct: 83  AWTVSFVMPSGYQAETLPAPLDPDVRIREVPARTVAVIRFSGRASEEDVAEKAAELRAWL 142

Query: 127 KGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
           + D    +K      +A YNPP+T PF RRNE+ +
Sbjct: 143 EAD---GLKPRGEPFLAGYNPPWTPPFLRRNEVWV 174

This family represents a group of putative heme-binding proteins. Our family includes archaeal and bacterial homologues. Length = 174

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PF04832	176	SOUL: SOUL heme-binding protein; InterPro: IPR0069	100.0
PRK10016	156	DNA gyrase inhibitor; Provisional	96.8
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	96.47
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	94.98
PRK10016	156	DNA gyrase inhibitor; Provisional	94.43
COG3449	154	DNA gyrase inhibitor [DNA replication, recombinati	92.81
PF06445	155	GyrI-like: GyrI-like small molecule binding domain	92.31
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	88.49
smart00871	158	AraC_E_bind Bacterial transcription activator, eff	84.32
COG4978	153	Transcriptional regulator, effector-binding domain	83.14

>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []

Probab=100.00  E-value=1.4e-44  Score=283.53  Aligned_cols=142  Identities=45%  Similarity=0.732  Sum_probs=109.0

Q ss_pred             CCCcch-hhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCC-CCCC
Q 030965            7 GFDFNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYG-ANLP   84 (168)
Q Consensus         7 g~~~~~-~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~-~~~P   84 (168)
                      ++.++. ...||++|++||+|+|+++.+|+||+||++++.+       |++.      +|.+.++|||+||++|| ++||
T Consensus        33 ~~~~~~a~~~~f~~L~~Yi~G~N~~~~ki~mT~PV~~~~~~-------~~~~------~~~~~~t~~f~lP~~~~~~~~P   99 (176)
T PF04832_consen   33 GCSFEEASSSGFRRLFRYIFGKNSAGEKIAMTAPVLTQVIP-------MTAE------SCEKEYTMSFFLPSEYQAENPP   99 (176)
T ss_dssp             CS-HHHHHHHHHHHHHHHHCT-CTT------BS-EEEEEEE-------TTTT------TCECEEEEEEE--HHHC-TS--
T ss_pred             CCChhHHHHHHHHHHHHHHhcCCcccceeeccCCEEEEEEc-------CCCc------ccCCcEEEEEEcCcccccccCC
Confidence            344544 4689999999999999999999999999999843       3321      25789999999999999 8999


Q ss_pred             CCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965           85 LPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  164 (168)
Q Consensus        85 ~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  164 (168)
                      +|+|++|+|+++|++++||++|+|+++++++.+++++|+++|+++|+.   +.+.+++|+||+||+++++|||||||.|+
T Consensus       100 ~P~d~~V~i~~~p~~~~~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~---~~~~~~~a~Yd~P~~~~~~R~NEV~i~v~  176 (176)
T PF04832_consen  100 KPTDPDVFIEEVPERTVYVRRFSGFATDEKIQEEAKKLRAALKKDGLK---DKGYYYVAGYDPPFTPPFNRRNEVWIPVK  176 (176)
T ss_dssp             -BSSTTEEEEEC-SEEEEEEEECS--SHHHHHHHHHHHHHHCCCTTHH---CCCEEEEEESSSS-SSSSSSCEEEEEE--
T ss_pred             CCCCCeEEEEEecCcEEEEEEECCcCCHHHHHHHHHHHHHHHHHcCCC---cCCCeEEEEcCCCCCCccCcceEEEEecC
Confidence            999999999999999999999999999999999999999999999963   67889999999998888999999999986

It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=96.80  E-value=0.11  Score=39.16  Aligned_cols=130  Identities=15%  Similarity=0.130  Sum_probs=79.8

Q ss_pred             chhhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCC
Q 030965           11 NGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPS   90 (168)
Q Consensus        11 ~~~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~   90 (168)
                      +...++|.+|+.++..+|-.     .+ +.+..... +        |-.+.+.  +-.+-++.-+|....  .| +.+..
T Consensus        24 ~~~~~~~~~L~~~~~~~~l~-----~~-~~~~i~~D-~--------p~~~~~~--~~R~d~~i~v~~~~~--~~-~~~~~   83 (156)
T PRK10016         24 QTVKQGFEQLMMWVDSHNIV-----PK-EWVAVYYD-N--------PDEVPAE--KLRCDTVVTVPDDFV--LP-ENSEG   83 (156)
T ss_pred             hHHHHHHHHHHHHHHHcCCC-----CC-cEEEEECC-C--------CCCCChH--HceeeEEEEeCCCcc--cC-CCCCC
Confidence            44567899999999665532     12 23333221 1        2111110  114788999997643  22 22357


Q ss_pred             eEEEeeCCcEEEEEEecCcCChHHHHHHHHH-HHHHHhcCCCcceecCCcEEEEEeC-CCCCCCCCCeeeEEEEeecc
Q 030965           91 VRIKEVPKKVVAVVAFSGFVTDEDVKRRELK-LRDALKGDRQFRVKEGASVEVAQYN-PPFTLPFTRRNEIALEVERK  166 (168)
Q Consensus        91 V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~-L~~~L~~~g~~~~~~~~~~~~A~Yd-~P~~~~~~R~NEV~i~v~~~  166 (168)
                      +.+..+|+.++||..+.|.  -+.+.+.... +.+||..+|.. . .++ +.+-.|. .|... -.-.=||||+|+.+
T Consensus        84 ~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~-~-~~~-p~~E~Y~~~~~~~-~~~~tei~iPI~~~  155 (156)
T PRK10016         84 VILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ-M-APK-PCFEVYLNDGAED-GYWDIEMYVPVQKK  155 (156)
T ss_pred             eEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc-c-CCC-CCEEEeCCCCCCC-CcEEEEEEEEeEEC
Confidence            9999999999999999995  4456666666 77999999953 2 223 3444555 34433 23245999999853

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=96.47  E-value=0.087  Score=38.02  Aligned_cols=127  Identities=14%  Similarity=0.130  Sum_probs=79.7

Q ss_pred             hhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCCeE
Q 030965           13 ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVR   92 (168)
Q Consensus        13 ~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~V~   92 (168)
                      ....+.+|..++.-.+...    ...+.+.........         .  .+..-.+.+++.++...      +...++.
T Consensus        28 i~~~~~~l~~~~~~~~~~~----~~~~~~~i~~~~~~~---------~--~~~~~~~~~~~~~~~~~------~~~~~~~   86 (155)
T PF06445_consen   28 IPELWQRLMSWLKEIGLST----DPGPIIGIYYDNPNI---------T--DDEEFRYDIGVEVDEDV------PNPDGME   86 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHCC----SSSSEEEEEEECCTS---------S--TGCEEEEEEEEEECTTC------SGCTTSE
T ss_pred             HHHHHHHHHHHHHHhhccc----CCCcceeEEeccccc---------c--CCcceEEEEEEEEcccc------cCCceEE
Confidence            3467888888874322111    455555544322100         0  00123455666665433      4467899


Q ss_pred             EEeeCCcEEEEEEecCcCChHHHHHHHHHHHH-HHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965           93 IKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD-ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  164 (168)
Q Consensus        93 i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~-~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  164 (168)
                      ...+|+.++++..|.|-.  +.+.+....|.+ ||.++|+.  ...+..+-..++.|....-.-.=||||+|+
T Consensus        87 ~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~~--~~~~~~~E~y~~~~~~~~~~~~~ei~iPik  155 (155)
T PF06445_consen   87 SRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGYE--RRDGPDFEIYLNDPDTDEEEYVTEIYIPIK  155 (155)
T ss_dssp             EEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTCE--EESSEEEEEEESSTTTTSCGEEEEEEEEEE
T ss_pred             EEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCCc--cCCCCcEEEECCCCCCCCCceEEEEEEEEC
Confidence            999999999999999976  777889999999 99999973  233433334444555333466679999985

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=94.98  E-value=0.13  Score=39.76  Aligned_cols=57  Identities=21%  Similarity=0.150  Sum_probs=48.1

Q ss_pred             CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCC
Q 030965           90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT  150 (168)
Q Consensus        90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~  150 (168)
                      +|+|+++|+..||..+-.|  ......+-.++|.+|..++|+..  ..+..+...||.|-.
T Consensus         2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p--~~S~~~gI~~ddP~~   58 (154)
T COG3449           2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLP--EQSETLGIYQDDPDT   58 (154)
T ss_pred             CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCC--CCceEEEEecCCCCC
Confidence            7999999999999999999  77888999999999999999852  335566677888874

>PRK10016 DNA gyrase inhibitor; Provisional

Probab=94.43  E-value=0.38  Score=36.30  Aligned_cols=68  Identities=18%  Similarity=0.140  Sum_probs=50.8

Q ss_pred             CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCC--CCCCCCCeeeEEEEe
Q 030965           90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPP--FTLPFTRRNEIALEV  163 (168)
Q Consensus        90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P--~~~~~~R~NEV~i~v  163 (168)
                      +|.|+++|+..++.++..|...+ .+.+...+|.+++.++|+.   .. .++...||.|  ... -.-|=.|.|.+
T Consensus         2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~---~~-~~~~i~~D~p~~~~~-~~~R~d~~i~v   71 (156)
T PRK10016          2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIV---PK-EWVAVYYDNPDEVPA-EKLRCDTVVTV   71 (156)
T ss_pred             ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCC---CC-cEEEEECCCCCCCCh-HHceeeEEEEe
Confidence            58999999999999999997643 4678889999999999974   23 3778889999  544 23244444433

>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]

Probab=92.81  E-value=3.2  Score=32.17  Aligned_cols=126  Identities=15%  Similarity=0.200  Sum_probs=78.6

Q ss_pred             chhhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCC
Q 030965           11 NGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPS   90 (168)
Q Consensus        11 ~~~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~   90 (168)
                      .--.++|.+|+.+-.-++--    +-+. ....+..++        |-.+.+  ..=.|-.|..+|...     ++++..
T Consensus        23 ~~~~~~~~~l~~W~~~~~l~----p~~S-~~~gI~~dd--------P~~Tp~--e~~R~D~cv~v~~~~-----~~n~~~   82 (154)
T COG3449          23 ATLKQTFEQLIAWRRENGLL----PEQS-ETLGIYQDD--------PDTTPA--EKCRYDACVVVPEPI-----PENSEG   82 (154)
T ss_pred             HHHHHHHHHHHHHHHHcCCC----CCCc-eEEEEecCC--------CCCCCH--HHceeeEEEEcCCcc-----CCCCCc
Confidence            33467899999998655422    1122 223333332        211111  123678888888322     245788


Q ss_pred             eEEEeeCCcEEEEEEecCcCChHHHHHH-HHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEe
Q 030965           91 VRIKEVPKKVVAVVAFSGFVTDEDVKRR-ELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEV  163 (168)
Q Consensus        91 V~i~~~p~~~v~v~~F~G~~~~~~~~~~-~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v  163 (168)
                      |.+-++|+..+||.+|.|.  .+++.+- ..-+..||.+.|..   ..+.+.+.+|=+....  .-..|+.+.+
T Consensus        83 v~~~~i~GG~YAV~r~~~~--~d~~~~aw~~if~ewlp~Sg~~---~~d~P~~e~y~n~~~~--~~~~e~~vdi  149 (154)
T COG3449          83 VQLGEIPGGLYAVARFRGT--ADDLAKAWGYIFGEWLPASGYE---PRDRPILERYLNFPAE--DPEHEIEVDI  149 (154)
T ss_pred             eeEeeecCCceEEEEEecc--HHHHHHHHHHHHhhhccccCcc---cCCCchHHHHhccCCC--CcceeEEEEE
Confidence            9999999999999999995  3444444 45566777788753   5667888888666665  4445555443

>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors

Probab=92.31  E-value=0.55  Score=33.72  Aligned_cols=72  Identities=21%  Similarity=0.133  Sum_probs=56.0

Q ss_pred             CeEEEeeCCcEEEEEEecCcCChHH-HHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965           90 SVRIKEVPKKVVAVVAFSGFVTDED-VKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  164 (168)
Q Consensus        90 ~V~i~~~p~~~v~v~~F~G~~~~~~-~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  164 (168)
                      +|+|+++|+.+++..+..|...+.. +.+..++|.++|...++.  .....++...||.|... ......+++-+.
T Consensus         2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~   74 (155)
T PF06445_consen    2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLS--TDPGPIIGIYYDNPNIT-DDEEFRYDIGVE   74 (155)
T ss_dssp             CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHC--CSSSSEEEEEEECCTSS-TGCEEEEEEEEE
T ss_pred             CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhcc--cCCCcceeEEecccccc-CCcceEEEEEEE
Confidence            5899999999999999999887777 889999999999998753  13456777788888543 366666666544

The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=88.49  E-value=7.2  Score=27.81  Aligned_cols=90  Identities=13%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             eEEEEEEeecCCCCCCCCCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCC
Q 030965           68 KWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNP  147 (168)
Q Consensus        68 ~~~msF~lP~~~~~~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~  147 (168)
                      .+.+++.++....      ....+.+..+|+..+++..|.|- ..+.+.+...+|..++..+|.....+.+..+-..++.
T Consensus        68 ~~~~g~~v~~~~~------~~~~~~~~~~p~~~y~~~~~~g~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~E~y~~~  140 (158)
T smart00871       68 RYDAGVEVSDEVE------NPEGVETKEIPAGKYAVFTHKGG-SYDEIQETWEAIYGEWLPNSGYELRDAGPDFEIYLND  140 (158)
T ss_pred             EEEEEEEeCCCCC------CCCCceEEEECCCcEEEEEEcCC-CHHHHHHHHHHHHHhhcccCCCccCcCCceEEEEeCC
Confidence            4556666664321      13468899999999999999993 4667889999999999988854211123333333444


Q ss_pred             CCC-CCCCCeeeEEEEee
Q 030965          148 PFT-LPFTRRNEIALEVE  164 (168)
Q Consensus       148 P~~-~~~~R~NEV~i~v~  164 (168)
                      |.. .+-...=||+|+|+
T Consensus       141 ~~~~~~~~~~~ei~ipv~  158 (158)
T smart00871      141 PADTDPEELVTEIYIPIK  158 (158)
T ss_pred             CCCCChhHeEEEEEEEcC
Confidence            432 11234668888874

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain

Probab=84.32  E-value=5.9  Score=28.25  Aligned_cols=61  Identities=21%  Similarity=0.148  Sum_probs=44.8

Q ss_pred             CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCC
Q 030965           90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT  150 (168)
Q Consensus        90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~  150 (168)
                      .+.|..+|+.+++..++.|...+..+.+...+|.+++...+.......+..+...|+.|..
T Consensus         1 ~~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   61 (158)
T smart00871        1 EVRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIGPSGPPYGVYYDDPDD   61 (158)
T ss_pred             CCEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCCCCccEEEEECCCCCC
Confidence            3688999999999999999877556777788899998888753111123566777777764

This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.

>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]

Probab=83.14  E-value=6.3  Score=30.36  Aligned_cols=128  Identities=17%  Similarity=0.217  Sum_probs=74.4

Q ss_pred             CCCcchhhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCC
Q 030965            7 GFDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLP   86 (168)
Q Consensus         7 g~~~~~~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P   86 (168)
                      |.+.......+..|..+..-++     +.---|+...+...         ++..    .+-..-+++++-...+      
T Consensus        22 ~~~~~~~~~~~~el~~~~~~~~-----~~~~~~~~~~~~~~---------~~~~----~~~~~~~s~~i~~~~~------   77 (153)
T COG4978          22 GIPERLIEQVYSELCNFLKSNG-----IIPIGPYGATIFHE---------PLKE----EDVDIEVSIPISGEVE------   77 (153)
T ss_pred             cCcHHHHHHHHHHHHHHHhhcC-----ccccCCceEEEEee---------eecc----cccccceeEEEEEecC------
Confidence            3445555677888888885433     11112333333211         1100    0112345555443322      


Q ss_pred             CCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEe-CCCCCC--CCCCeeeEEEEe
Q 030965           87 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQY-NPPFTL--PFTRRNEIALEV  163 (168)
Q Consensus        87 ~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Y-d~P~~~--~~~R~NEV~i~v  163 (168)
                      .|.++.+..+|..+++...|.|...  .+.+.-++|..+++++|+. +  .+. ....| .+|.+.  +-.-.=||.+++
T Consensus        78 ~~~~~~~~~~P~g~~a~~~~~G~~~--~~~~~y~rli~~iee~g~~-i--~g~-~~E~y~~d~~~~~~~~e~~tei~i~v  151 (153)
T COG4978          78 GDIDIKIKTLPKGKYACIIHKGSYE--EVEQAYKRLIEYIEENGLE-I--IGP-SREVYLIDPATEVNPEEYLTEIQIPV  151 (153)
T ss_pred             CCCcceeEEccCceEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCc-c--cCc-eEEEEecCCccccChhHeEEEEEEEe
Confidence            7899999999999999999999654  4568899999999999973 2  232 33333 344421  124445677666


Q ss_pred             e
Q 030965          164 E  164 (168)
Q Consensus       164 ~  164 (168)
                      +
T Consensus       152 ~  152 (153)
T COG4978         152 K  152 (153)
T ss_pred             e
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2hva_A	192	Solution Structure Of The Haem-Binding Protein P22h		6e-08
4a1m_A	195	Nmr Structure Of Protoporphyrin-Ix Bound Murine P22		6e-08
2gov_A	195	Solution Structure Of Murine P22hbp Length = 195		7e-08

>pdb|2HVA|A Chain A, Solution Structure Of The Haem-Binding Protein P22hbp Length = 192

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 45  TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 71  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 130
Query: 100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 131 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 187
Query: 160 AL 161
            L
Sbjct: 188 WL 189

>pdb|4A1M|A Chain A, Nmr Structure Of Protoporphyrin-Ix Bound Murine P22hbp Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 45  TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 160 AL 161
            L
Sbjct: 191 WL 192

>pdb|2GOV|A Chain A, Solution Structure Of Murine P22hbp Length = 195

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 8/122 (6%)
Query: 45  TQSDGEKMEMTTPVISKKLEDQD-----KWQMSFVMPSKYGANLPLPKDPSVRIKEXXXX 99
           T   G  M MT PV      ++D     K ++ F +P+++  + P P D SV+I+E    
Sbjct: 74  TNDKGVGMGMTVPVSFAVFPNEDGSLQKKLKVWFRIPNQFQGSPPAPSDESVKIEEREGI 133
Query: 100 XXXXXXFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
                 F G+  + D      +LR  L+G       +G     A Y+PP   P+ RRNE+
Sbjct: 134 TVYSTQFGGYAKEADYVAHATQLRTTLEGTPA--TYQGDVYYCAGYDPPMK-PYGRRNEV 190
Query: 160 AL 161
            L
Sbjct: 191 WL 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	2e-27
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	4e-26
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	5e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A Length = 195

 Score =  100 bits (250), Expect = 2e-27
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 17/157 (10%)

Query: 6   TGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 64
           T    + A R     + +Y+ G N K   M MT PV      ++   ++           
Sbjct: 52  TDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQK---------- 101

Query: 65  DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD 124
              K ++ F +P+++  + P P D SV+I+E     V    F G+  + D      +LR 
Sbjct: 102 ---KLKVWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRT 158

Query: 125 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIAL 161
            L+G       +G     A Y+PP   P+ RRNE+ L
Sbjct: 159 TLEGTP--ATYQGDVYYCAGYDPPMK-PYGRRNEVWL 192

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens} Length = 227

 Score = 98.1 bits (243), Expect = 4e-26
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 6   TGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 64
              D++ A ++ F  L  Y+ GKN K   ++MT PV +      G   E           
Sbjct: 76  ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSES---------- 125

Query: 65  DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD 124
                 +S  +PS+   + P P +  V I++  +  V V +F GF + +  + + L L  
Sbjct: 126 ---TITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLAS 182

Query: 125 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 168
            L+ D   +V +      A YN P      R NE+ L  + +  
Sbjct: 183 ILREDG--KVFDEKVYYTAGYNSPVK-LLNRNNEVWLIQKNEPT 223

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 3r85_E Length = 212

 Score = 97.7 bits (242), Expect = 5e-26
 Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 17/164 (10%)

Query: 6   TGFDFNGASRS-FNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLE 64
              D++ A ++ F  L  Y+ GKN K   ++MT PV +      G   E           
Sbjct: 57  ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSES---------- 106

Query: 65  DQDKWQMSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRD 124
                 +S  +PS+   + P P +  V I++  +  V V +F GF + +  + + L L  
Sbjct: 107 ---TITISLYIPSEQQFDPPRPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLAS 163

Query: 125 ALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVERKEE 168
            L+ D   +V +      A YN P      R NE+ L  + +  
Sbjct: 164 ILREDG--KVFDEKVYYTAGYNSPVK-LLNRNNEVWLIQKNEPT 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 25/186 (13%), Positives = 58/186 (31%), Gaps = 52/186 (27%)

Query: 8   FDFNGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTP----VISKKL 63
            DF  A+ + ++  ++     T  E   +    +  + Q    ++  T P    +I++ +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 64  EDQ----DKW------QMSFVMPSKYGANLP-------------LPKDPSVRIKEVPKKV 100
            D     D W      +++ ++ S     L               P      I   P  +
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPS--AHI---PTIL 391

Query: 101 VAVV------AFSGFVTDEDVKRRELKLRDALKG-----DRQFRVKEGASVE-------V 142
           ++++      +    V ++  K   ++ +   +           +K     E       V
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 143 AQYNPP 148
             YN P
Sbjct: 451 DHYNIP 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3r8j_A	212	Heme-binding protein 2; HEBP family, SOUL protein,	100.0
4b0y_A	227	Heme-binding protein 2; apoptosis; 3.50A {Homo sap	100.0
2gov_A	195	P22HBP, heme-binding protein 1; structural genomic	100.0
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	97.96
1jyh_A	157	DNA gyrase inhibitory protein; structural genomics	97.96
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	95.41
3lur_A	158	Putative bacterial transcription regulation prote;	95.15
1r8e_A	278	Multidrug-efflux transporter regulator; protein-DN	94.66
1d5y_A	292	ROB transcription factor; protein-DNA complex, DNA	93.76
3gk6_A	170	Integron cassette protein VCH_CASS2; novel, oyster	90.14
3e0h_A	158	Uncharacterized protein; chlorobium tepidum, struc	88.96
3b49_A	211	LIN2189 protein; BIG 860.1, structural genomics, M	83.27

>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E

Probab=100.00  E-value=2.3e-45  Score=295.22  Aligned_cols=143  Identities=28%  Similarity=0.460  Sum_probs=129.7

Q ss_pred             CCCcchh-hHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCC
Q 030965            7 GFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPL   85 (168)
Q Consensus         7 g~~~~~~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~   85 (168)
                      |.+++.+ ..||++|++||+|+|.++.+|+||+||++++.++++       |.      |.+.|+|+|+||++||++||+
T Consensus        58 ~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP~  124 (212)
T 3r8j_A           58 SMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSG-------PF------SESTITISLYIPSEQQFDPPR  124 (212)
T ss_dssp             ESCHHHHHHHHHHHHHHHHTTCBTTCCCCCCBSCEEEEEECTTS-------TT------SCEEEEEEEECCHHHHSSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEecCCC-------cc------cCceEEEEEEcChHHccCCCC
Confidence            4556554 789999999999999999999999999999876554       22      467999999999999999999


Q ss_pred             CCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 030965           86 PKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  165 (168)
Q Consensus        86 P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~  165 (168)
                      |+|++|+|+++|+++|||++|+|++++..+.+++++|+++|.++|+.  ..++.|++|+||+||++ ++|||||||.++.
T Consensus       125 P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~~  201 (212)
T 3r8j_A          125 PLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQKN  201 (212)
T ss_dssp             BSSTTEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCC--BCSSCEEEEESSSSSCC-SSSCEEEEEEBCC
T ss_pred             CCCCceEEEEeCCEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEeCC
Confidence            99999999999999999999999999999999999999999999974  35667899999999997 9999999999875

>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}

Probab=100.00  E-value=3.3e-45  Score=296.86  Aligned_cols=145  Identities=27%  Similarity=0.449  Sum_probs=125.7

Q ss_pred             CCCCcch-hhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCC
Q 030965            6 TGFDFNG-ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLP   84 (168)
Q Consensus         6 ~g~~~~~-~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P   84 (168)
                      +|.+++. ...||++|++||+|+|.++.+|+||+||++++.++++       |.      |.+.|+|+|+||++||++||
T Consensus        76 ~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~t~~~p~~~-------~~------~~~~~tvsF~lP~~~q~~pP  142 (227)
T 4b0y_A           76 ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSG-------PF------SESTITISLYIPSEQQFDPP  142 (227)
T ss_dssp             EESCHHHHHHHHHHHHHHHHHTCBTTCCCCCCBSCEEEEEECCC---------C------CCEEEEEEEECCGGGSSSCC
T ss_pred             eCCCHHHHHHHHHHHHHHHhhcCCCCCCccccccCEEEEEecCCC-------cc------cCceEEEEEEcChhhccCCC
Confidence            3455665 4789999999999999999999999999999876554       32      46799999999999999999


Q ss_pred             CCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965           85 LPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  164 (168)
Q Consensus        85 ~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  164 (168)
                      +|+|++|+|+++|+++|||++|+|+++++++.+++++|+++|+++|+.  ..++.|++|+||+||++ ++|||||||.++
T Consensus       143 ~P~D~~V~i~~~p~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~y~~A~Yd~P~t~-~~RrNEVwi~~~  219 (227)
T 4b0y_A          143 RPLESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKV--FDEKVYYTAGYNSPVKL-LNRNNEVWLIQK  219 (227)
T ss_dssp             CBSSSSEEEEEECCEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCC--BCSSCEEEEECC---CC-CSSCEEEEEEBC
T ss_pred             CCCCCceEEEEeCCEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCc--cCCCcEEEEEeCCCCCc-CCceeEEEEEEC
Confidence            999999999999999999999999999999999999999999999974  35667899999999997 999999999887


Q ss_pred             cc
Q 030965          165 RK  166 (168)
Q Consensus       165 ~~  166 (168)
                      .+
T Consensus       220 ~e  221 (227)
T 4b0y_A          220 NE  221 (227)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A

Probab=100.00  E-value=1.6e-45  Score=292.67  Aligned_cols=143  Identities=28%  Similarity=0.410  Sum_probs=127.6

Q ss_pred             CCCCcchh-hHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCC
Q 030965            6 TGFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLP   84 (168)
Q Consensus         6 ~g~~~~~~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P   84 (168)
                      +|+.++.+ ..||++|++||+|+|..+.+|+||+||++++.++++       |.      |.+.|+|||+||++||++||
T Consensus        52 ~~~~~~~A~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~p~~~-------~~------~~~~~tvsF~lP~~~~~~pP  118 (195)
T 2gov_A           52 TDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNED-------GS------LQKKLKVWFRIPNQFQGSPP  118 (195)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEECTT-------SC------EEEEEEEEECCCHHHHHSCC
T ss_pred             cCCChhHHHHHHHHHHHHHhccCCCCCCCcccccCEEEEEcCCCC-------CC------cCceEEEEEEcchhcccCCC
Confidence            35555554 679999999999999999999999999998766443       22      46789999999999999999


Q ss_pred             CCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965           85 LPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  164 (168)
Q Consensus        85 ~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  164 (168)
                      +|+|++|+|+++|+++|||++|+|++++..+.+++++|+++|+++|+.  ...+.|++|+||+||++ ++|||||||..+
T Consensus       119 ~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~~~~a~Yn~P~~~-~~RrNEV~i~~~  195 (195)
T 2gov_A          119 APSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVKA  195 (195)
T ss_dssp             CBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEEC
T ss_pred             CCCCCceEEEEeCCeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCc--ccCCcEEEEEeCCCCCc-CCceeEEEEEeC
Confidence            999999999999999999999999999999999999999999999975  34567899999999998 999999999863

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=97.96  E-value=0.00034  Score=51.38  Aligned_cols=120  Identities=12%  Similarity=0.099  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCCeEEE
Q 030965           15 RSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVRIK   94 (168)
Q Consensus        15 ~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~V~i~   94 (168)
                      ..|.+|++++..+|-     ..+.|.+......+               ..+-.+.+++.++...      +.+.+|.+.
T Consensus        37 ~~~~~l~~~~~~~~l-----~~~g~~~~iy~d~~---------------~~~~~~~~~~~v~~~~------~~~~~~~~~   90 (158)
T 3e0h_A           37 AGYHDILQLLAGQGK-----SPSGPPFARYFGMS---------------AGTFEVEFGFPVEGGV------EGSGRVVTG   90 (158)
T ss_dssp             HHHHHHHHHHHHTTC-----CCSSCCEEEEESCT---------------TSCEEEEEEEECCSCC------CCBTTBEEE
T ss_pred             HHHHHHHHHHHHcCC-----CCCCCeEEEEecCC---------------CcceEEEEEEEeCCCC------CCCCceEEE
Confidence            568899999876543     23455444443211               0123466666665422      234689999


Q ss_pred             eeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCC-CCCCCeeeEEEEeec
Q 030965           95 EVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFT-LPFTRRNEIALEVER  165 (168)
Q Consensus        95 ~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~-~~~~R~NEV~i~v~~  165 (168)
                      .+|+.++|+.++.|...+  +.+...+|.+||.++|+. . . +..+-..++.|.. .+-..+.||||+|+.
T Consensus        91 ~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~-~-~-~~~~E~Y~~~p~~~~~~~~~tei~ipv~~  157 (158)
T 3e0h_A           91 LTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFD-L-S-GEAYEIYLDNPAETAPDQLRTRVSLMLHE  157 (158)
T ss_dssp             ECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCC-E-E-EEEEEEECSCTTSSCGGGCEEEEEEEECC
T ss_pred             EeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCC-c-C-CCEEEEEeCCCCCCCHHHhEEEEEEEEcC
Confidence            999999999999997654  778888999999999964 2 2 3344444577774 345778999999973

>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3

Probab=97.96  E-value=9.6e-05  Score=52.60  Aligned_cols=129  Identities=14%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCCeE
Q 030965           13 ASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSVR   92 (168)
Q Consensus        13 ~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~V~   92 (168)
                      ...+|.+|++++..+|-..      .+.+.... ..        |...+  ...-.+.+++.+|....  +| |.++.+.
T Consensus        26 i~~~~~~l~~~~~~~~~~~------~~~~gi~~-~~--------~~~~~--~~~~~~~~~~~v~~~~~--~~-~~~~~~~   85 (157)
T 1jyh_A           26 VKKGFEQLMMWVDSKNIVP------KEWVAVYY-DN--------PDETP--AEKLRCDTVVTVPGYFT--LP-ENSEGVI   85 (157)
T ss_dssp             HHHHHHHHHHHHHHTTCCC------SEEEEEEC-SC--------TTTSC--GGGCEEEEEEEECTTCC--CC-SSCTTCE
T ss_pred             HHHHHHHHHHHHHHcCCCC------CcEEEEEC-CC--------CCCCC--HHHheEEEEEEecCccc--cC-CCCCCeE
Confidence            4567999999997665322      14433221 11        11100  01346788888886543  22 4467899


Q ss_pred             EEeeCCcEEEEEEecCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC-CCCCCCCCCeeeEEEEeeccC
Q 030965           93 IKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN-PPFTLPFTRRNEIALEVERKE  167 (168)
Q Consensus        93 i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Yd-~P~~~~~~R~NEV~i~v~~~~  167 (168)
                      +..+|+.++||..|.|...  .+.+....|. +||.++|+.   ..+.+.+..|. .|.. +...+-||||+|+.++
T Consensus        86 ~~~ip~g~ya~~~~~G~~~--~~~~~~~~l~~~wl~~~g~~---~~~~~~~E~Y~~~~~~-~~~~~tei~ipi~~~~  156 (157)
T 1jyh_A           86 LTEITGGQYAVAVARVVGD--DFAKPWYQFFNSLLQDSAYE---MLPKPCFEVYLNNGAE-DGYWDIEMYVAVQPKH  156 (157)
T ss_dssp             EEEECCEEEEEEEEEECSS--CCHHHHHHHHHHHTTCSSEE---ECSSCEEEEECSCHHH-HSSEEEEEEEEEEEC-
T ss_pred             EEEeCCCcEEEEEEEeCHH--HHHHHHHHHHHHhhcccCCc---cCCCceEEEecCCCCC-cccEEEEEEEEeeeCC
Confidence            9999999999999999763  3566777775 999999953   23335667773 2323 2456679999998764

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=95.41  E-value=0.094  Score=40.43  Aligned_cols=95  Identities=9%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             CeEEEEEEeecCCCC------------CCCCCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcce
Q 030965           67 DKWQMSFVMPSKYGA------------NLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRV  134 (168)
Q Consensus        67 ~~~~msF~lP~~~~~------------~~P~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~  134 (168)
                      -.|.+++-+|...+.            ..|.+....|.+..+|+.++++..+.|...  .+.+-...|.+||.++|+.. 
T Consensus       102 ~~~~~~i~vp~~v~~~~~~~a~~~~~~~~~~~~~~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~~~-  178 (211)
T 3b49_A          102 WLWTSILRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGLRN-  178 (211)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHCTTSCCTTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTCCB-
T ss_pred             eEEEEEEEcCCcccHHHHHHHHHHHhccCCCCCcccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCCcc-
Confidence            367788888864321            023333567999999999999999999765  35677888889999999721 


Q ss_pred             ec--CCcEEEEEeCCCCCC-CCCCeeeEEEEee
Q 030965          135 KE--GASVEVAQYNPPFTL-PFTRRNEIALEVE  164 (168)
Q Consensus       135 ~~--~~~~~~A~Yd~P~~~-~~~R~NEV~i~v~  164 (168)
                      ..  .+..+--.++.|... +-.-+=||+++|+
T Consensus       179 ~~~~~~~~~EiY~~dp~~~~~~~~~tei~ipV~  211 (211)
T 3b49_A          179 DTGAIRKHHEIYLSDPRKANPEKMKTILRLPVS  211 (211)
T ss_dssp             CBTTTBCEEEEECSCTTTSCGGGCEEEEEEEBC
T ss_pred             ccCCCCcEEEEEeCCCCCCChHHeEEEEEEEeC
Confidence            11  133333444667643 2233568898874

>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}

Probab=95.15  E-value=0.24  Score=36.06  Aligned_cols=73  Identities=12%  Similarity=0.023  Sum_probs=51.9

Q ss_pred             CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 030965           89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  165 (168)
Q Consensus        89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~  165 (168)
                      +.+....+|+.++||.++.|-..+ .+.+--..| ..||-+.|..   ....+-+-.|...-..+-.-.-||||+|+.
T Consensus        85 ~~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~---~~~~p~fE~Y~~~~~~~~~~~~ei~iPI~~  158 (158)
T 3lur_A           85 AKYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANT---VKSAPFFELYQDGDTTSEKYITEIWMPVKG  158 (158)
T ss_dssp             GGSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTT---BCSSCEEEEECSSCTTSTTCEEEEEEEECC
T ss_pred             CCcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCe---eCCCccEEEECCCCCCCcceEEEEEEEEcC
Confidence            578899999999999999997544 445555554 4689998864   233466778876433233556799999973

>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*

Probab=94.66  E-value=0.2  Score=39.79  Aligned_cols=73  Identities=18%  Similarity=0.125  Sum_probs=53.1

Q ss_pred             CCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC--CCCCeeeEEEEee
Q 030965           87 KDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL--PFTRRNEIALEVE  164 (168)
Q Consensus        87 ~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~--~~~R~NEV~i~v~  164 (168)
                      .+..|.+..+|+.++++..+.|..  +.+.+....|.+||.++|+. +  .+..+--.++.|+..  +-.-.-||||+|+
T Consensus       203 ~~~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~-~--~g~~~E~y~~~~~~~~~~~~~~teI~iPv~  277 (278)
T 1r8e_A          203 ITPDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVYELIIPIHYSPKKQEEYRVEMKIRIA  277 (278)
T ss_dssp             CCTTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEEEEEEESCCCSSSCCCEEEEEEEEEC
T ss_pred             ccCCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc-c--CCCeEEEEeecccccCChhheEEEEEEEec
Confidence            356799999999999999999955  45677788899999999964 2  233444444466643  2244679999986

>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2

Probab=93.76  E-value=0.32  Score=38.55  Aligned_cols=73  Identities=11%  Similarity=0.099  Sum_probs=50.6

Q ss_pred             CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEeC---C-CCCCC-CCCeeeEEEE
Q 030965           89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQYN---P-PFTLP-FTRRNEIALE  162 (168)
Q Consensus        89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Yd---~-P~~~~-~~R~NEV~i~  162 (168)
                      +.+....+|+.++||..+.|.  .+.+.+-...|. +||.+.|..   ....+-+-.|.   . +.... -.-.=||||+
T Consensus       210 ~~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy~---~~~~p~~E~Y~~~~~~~~~~~~~~~~tEI~iP  284 (292)
T 1d5y_A          210 LTGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNLT---RRKGQDIERYYPAEDAKAGDRPINLRCELLIP  284 (292)
T ss_dssp             TTCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTCE---ECSSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred             CcceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCCc---cCCCCcEEEEeeccccCCCCCCCceEEEEEEE
Confidence            468999999999999999994  456777888885 999999953   12334556675   3 32221 1223599999


Q ss_pred             eecc
Q 030965          163 VERK  166 (168)
Q Consensus       163 v~~~  166 (168)
                      |+.+
T Consensus       285 I~~k  288 (292)
T 1d5y_A          285 IRRK  288 (292)
T ss_dssp             EECC
T ss_pred             eehh
Confidence            9865

>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}

Probab=90.14  E-value=4.4  Score=29.87  Aligned_cols=66  Identities=11%  Similarity=0.084  Sum_probs=47.6

Q ss_pred             CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCC--CcceecCCcEEEEEeCCCCCCCCCCeeeEEEEee
Q 030965           89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR--QFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVE  164 (168)
Q Consensus        89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g--~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~  164 (168)
                      +.+....+|+.++||-++.|-..+ .+.+--..+..||-+.|  ..   ....+-+-.|+...      .-||||+|+
T Consensus       103 ~g~~~~~IP~g~YAVF~~~G~~p~-~i~~~w~~I~~WlP~sg~~y~---~~~~pdfE~Y~~~~------~~eI~IpI~  170 (170)
T 3gk6_A          103 SESVKTKVSSGKYVTFSATGEMPQ-VVIDLWNEVWNYFASEHCPHK---RAYTTDFEYYKSAN------TVEISIAVR  170 (170)
T ss_dssp             TTCEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHC---CCCC---BCCSEEEEECCSSS------EEEEEEEBC
T ss_pred             CCcEEEEECCCCEEEEEecCCCHH-HHHHHHHHHHHhhhhcCCcce---ecCcCCEEEECCCC------eEEEEEEEC
Confidence            578999999999999999995544 56666677777999988  43   23456777886531      679999985

>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A

Probab=88.96  E-value=3.1  Score=29.60  Aligned_cols=70  Identities=11%  Similarity=0.082  Sum_probs=47.1

Q ss_pred             CeEEEeeCCcEEEEEEecCcCCh--HHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEeec
Q 030965           90 SVRIKEVPKKVVAVVAFSGFVTD--EDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEVER  165 (168)
Q Consensus        90 ~V~i~~~p~~~v~v~~F~G~~~~--~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v~~  165 (168)
                      +|+|+++|+.+|+.++..|...+  ..+.+.-.+|.+++..+|+.   ..+..+...||  +.. -.-+=|+.+.+..
T Consensus         8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l~---~~g~~~~iy~d--~~~-~~~~~~~~~~v~~   79 (158)
T 3e0h_A            8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGKS---PSGPPFARYFG--MSA-GTFEVEFGFPVEG   79 (158)
T ss_dssp             CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTCC---CSSCCEEEEES--CTT-SCEEEEEEEECCS
T ss_pred             ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCeEEEEec--CCC-cceEEEEEEEeCC
Confidence            68999999999999999997422  12445567899999999863   34444444455  222 2445577777653

>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}

Probab=83.27  E-value=6.6  Score=29.77  Aligned_cols=43  Identities=16%  Similarity=0.021  Sum_probs=37.3

Q ss_pred             CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHH------hcCCC
Q 030965           89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDAL------KGDRQ  131 (168)
Q Consensus        89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L------~~~g~  131 (168)
                      -+|.|.++|+..++.++..|.+.+..+.+...+|..++      .++|+
T Consensus        23 ~~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~   71 (211)
T 3b49_A           23 RKPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET   71 (211)
T ss_dssp             SSCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred             CCcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999766557888899999999      88886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d2gova1	184	d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (	2e-31

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  109 bits (273), Expect = 2e-31
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 16/149 (10%)

Query: 11  NGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQ 70
                +   + +Y+ G N K   M MT PV      ++   ++              K +
Sbjct: 47  EALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNEDGSLQ-------------KKLK 93

Query: 71  MSFVMPSKYGANLPLPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDR 130
           + F +P+++  + P P D SV+I+E     V    F G+  + D      +LR  L+G  
Sbjct: 94  VWFRIPNQFQGSPPAPSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTP 153

Query: 131 QFRVKEGASVEVAQYNPPFTLPFTRRNEI 159
                +G     A Y+PP   P+ RRNE+
Sbjct: 154 --ATYQGDVYYCAGYDPPMK-PYGRRNEV 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d2gova1	184	Heme-binding protein 1 {Mouse (Mus musculus) [TaxI	100.0
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	97.35
d1r8ea2	157	Multidrug-binding domain of transcription activato	96.15
d1d5ya3	173	Rob transcription factor, C-terminal domain {Esche	89.3
d1jyha_	155	Gyrase inhibitory protein GyrI (SbmC, YeeB) {Esche	87.22

>d2gova1 d.60.1.4 (A:7-190) Heme-binding protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: SOUL heme-binding protein
domain: Heme-binding protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-45  Score=285.27  Aligned_cols=142  Identities=28%  Similarity=0.416  Sum_probs=127.0

Q ss_pred             CCCCcchh-hHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCC
Q 030965            6 TGFDFNGA-SRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLP   84 (168)
Q Consensus         6 ~g~~~~~~-~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P   84 (168)
                      +|+.++.+ ..||++|++||+|+|+++++|+||+||++++.++++       +      .|.+.|+|||+||++|++++|
T Consensus        41 ~~~~~~~a~~~gF~~L~~YI~G~N~~~~kI~MTaPV~~~~~~~~~-------~------~~~~~~~m~F~lP~~~~~~~P  107 (184)
T d2gova1          41 TDKPVDEALREAMPKIMKYVGGTNDKGVGMGMTVPVSFAVFPNED-------G------SLQKKLKVWFRIPNQFQGSPP  107 (184)
T ss_dssp             ESSCHHHHHHHHHHHHHHHHHTCBTTCCCCCCCCCEEEEEEECTT-------S------CEEEEEEEEECCCHHHHHSCC
T ss_pred             cCCChhhHHHhhhHHHhheeccCCCCCcccccccceEEEEecCCC-------C------cccCcEEEEEEcchhhcccCC
Confidence            35666554 789999999999999999999999999999876653       1      256789999999999998999


Q ss_pred             CCCCCCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCCCCCeeeEEEEe
Q 030965           85 LPKDPSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLPFTRRNEIALEV  163 (168)
Q Consensus        85 ~P~d~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~~~R~NEV~i~v  163 (168)
                      +|+|++|+|+++|+.++||++|+|+++++++.+++++|+++|+++|+.  ...+.|++|+||+||++ |+|||||||..
T Consensus       108 ~P~d~~V~i~~~p~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~--~~~~~~~~a~Yd~P~~p-~~R~NEVw~vk  183 (184)
T d2gova1         108 APSDESVKIEEREGITVYSTQFGGYAKEADYVAHATQLRTTLEGTPAT--YQGDVYYCAGYDPPMKP-YGRRNEVWLVK  183 (184)
T ss_dssp             CBCSSSCEEEECCSCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCC--EEEEEEEEEESSCCSSS-SCCEEEEEEEE
T ss_pred             CCccccceeeccCcceEEEEEeCCcccHHHHHHHHHHHHHHHHHCCCc--ccCCCEEEEEeCCCCCC-CCcceeEEEEe
Confidence            999999999999999999999999999999999999999999999975  24556789999999996 99999999953

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00061  Score=47.84  Aligned_cols=129  Identities=15%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             hhhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCCe
Q 030965           12 GASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPSV   91 (168)
Q Consensus        12 ~~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~V   91 (168)
                      ...++|.+|+.++..++     +..+.+...-..  +        |.+++.  ..-.+.+++.++....  .|. .+..|
T Consensus        25 ~i~~~w~~l~~~~~~~~-----~~~~~~~~~~~~--~--------p~~~~~--~~~~~~~~v~v~~~~~--~~~-~~~~i   84 (155)
T d1jyha_          25 TVKKGFEQLMMWVDSKN-----IVPKEWVAVYYD--N--------PDETPA--EKLRCDTVVTVPGYFT--LPE-NSEGV   84 (155)
T ss_dssp             HHHHHHHHHHHHHHHTT-----CCCSEEEEEECS--C--------TTTSCG--GGCEEEEEEEECTTCC--CCS-SCTTC
T ss_pred             HHHHHHHHHHHHHHHhC-----CCCCCceEEEec--C--------cCcCCc--cceeEEEEEEcCCccc--cCc-ccceE
Confidence            35678999999997654     333333332211  1        111111  1346888999987654  332 25679


Q ss_pred             EEEeeCCcEEEEEEecCcCChHHHHHHHHHH-HHHHhcCCCcceecCCcEEEEEeC-CCCCCCCCCeeeEEEEeecc
Q 030965           92 RIKEVPKKVVAVVAFSGFVTDEDVKRRELKL-RDALKGDRQFRVKEGASVEVAQYN-PPFTLPFTRRNEIALEVERK  166 (168)
Q Consensus        92 ~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L-~~~L~~~g~~~~~~~~~~~~A~Yd-~P~~~~~~R~NEV~i~v~~~  166 (168)
                      .+..+|+.++|+..+.|-..+  +.+....| ..||.++|..   -...+.+-.|. .|...+ .-.=||||+|+++
T Consensus        85 ~~~~lp~g~yA~~~~~G~~~~--~~~~~~~~~~~wl~~~gy~---~~~~p~~E~Y~~~~~~~~-~~~~ei~iPIk~k  155 (155)
T d1jyha_          85 ILTEITGGQYAVAVARVVGDD--FAKPWYQFFNSLLQDSAYE---MLPKPCFEVYLNNGAEDG-YWDIEMYVAVQPK  155 (155)
T ss_dssp             EEEEECCEEEEEEEEEECSSC--CHHHHHHHHHHHTTCSSEE---ECSSCEEEEECSCHHHHS-SEEEEEEEEEEEC
T ss_pred             EEEEECCccEEEEEEccChHH--HHHHHHHHHhhhhhhcCCe---ECCCccEEEEcCCCCCCC-CEEEEEEEEEEEC
Confidence            999999999999999997543  34444455 6899999953   23345555664 333322 2234999999875

>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of transcription activator BmrR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Multidrug-binding domain of transcription activator BmrR
domain: Multidrug-binding domain of transcription activator BmrR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.15  E-value=0.076  Score=37.33  Aligned_cols=129  Identities=14%  Similarity=0.070  Sum_probs=79.6

Q ss_pred             chhhHHHHHHHHhhccCCCCCcccCCCccEEEEeecCCCccccccccceeccccCCCeEEEEEEeecCCCCCCCCCCCCC
Q 030965           11 NGASRSFNVLAEYLFGKNTKRETMEMTTPVITRKTQSDGEKMEMTTPVISKKLEDQDKWQMSFVMPSKYGANLPLPKDPS   90 (168)
Q Consensus        11 ~~~~~gF~~L~~YI~G~N~~~~ki~MT~PV~~~~~~~~~~~~~mt~pv~~~~~~~~~~~~msF~lP~~~~~~~P~P~d~~   90 (168)
                      +....+|.+|++|+..+|.     -..-++-..++..+-..            .....+.-+|..... ... +...+++
T Consensus        26 ~~~~~~~~~L~~~~~~~~~-----~~~~~~G~~~~~~~~~~------------~~~~~y~~~~~~~~~-~~~-~~~~~~~   86 (157)
T d1r8ea2          26 NVLNASYSKLKKFIESADG-----FTNNSYGATFSFQPYTS------------IDEMTYRHIFTPVLT-NKQ-ISSITPD   86 (157)
T ss_dssp             TCCGGGGHHHHHHHHHHHS-----SCCCCEEEEECCCCCSC------------GGGCCCSEEEEECCC-CSC-CSSCCTT
T ss_pred             HHHHHHHHHHHHHHHHcCC-----CCCCceEEEEECCCccc------------CcceEEEEEEEeccc-ccc-cCCccCC
Confidence            3446789999999977653     23445555443221100            012234434433221 112 2334688


Q ss_pred             eEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCC--CCCCeeeEEEEe
Q 030965           91 VRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTL--PFTRRNEIALEV  163 (168)
Q Consensus        91 V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~--~~~R~NEV~i~v  163 (168)
                      +.+..+|+.++++..|.|..  +.+.+...+|.+||.++|+. +  .+..+=-....|+..  +-.-.=||.|+|
T Consensus        87 ~~~~~lp~G~ya~~~~~G~y--~~~~~~y~~l~~~~~~~g~~-~--~g~~~E~y~~d~~~~~~~~~~~teI~ipv  156 (157)
T d1r8ea2          87 MEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT-V--VSDVYELIIPIHYSPKKQEEYRVEMKIRI  156 (157)
T ss_dssp             SEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC-E--EEEEEEEEEESCCCSSSCCCEEEEEEEEE
T ss_pred             ceEEecCCeEEEEEEEEECc--cchHHHHHHHHHHHHhcCcC-c--CCCeEEEEEcCCCCCCCHHHeEEEEEEEe
Confidence            99999999999999999965  47788888999999999974 2  333444444677654  233456777776

>d1d5ya3 d.60.1.2 (A:122-294) Rob transcription factor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Rob transcription factor, C-terminal domain
domain: Rob transcription factor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=1.3  Score=30.77  Aligned_cols=73  Identities=11%  Similarity=0.105  Sum_probs=50.1

Q ss_pred             CCeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHH-HHHhcCCCcceecCCcEEEEEe----CCCCCCC-CCCeeeEEEE
Q 030965           89 PSVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLR-DALKGDRQFRVKEGASVEVAQY----NPPFTLP-FTRRNEIALE  162 (168)
Q Consensus        89 ~~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~-~~L~~~g~~~~~~~~~~~~A~Y----d~P~~~~-~~R~NEV~i~  162 (168)
                      ..+....+|+.++||.+|.|..  +.+.+-...|. +||-+.|..   ....+-+-.|    |.+.... -+-.=|+||+
T Consensus        91 ~~~~~~~ip~g~YAvf~~~G~~--~~l~~~~~~iy~~wLP~sg~~---~~~~~d~E~Y~~~~~~~~~~~~~~~~~e~~IP  165 (173)
T d1d5ya3          91 LTGHPVMLQGGEYVMFTYEGLG--TGVQEFILTVYGTCMPMLNLT---RRKGQDIERYYPAEDAKAGDRPINLRCELLIP  165 (173)
T ss_dssp             TTCEEEEECCEEEEEEEEEEEG--GGHHHHHHHHHHTHHHHTTCE---ECSSCEEEEECGGGC----CCSCEEEEEEEEE
T ss_pred             CCCEEEEEcCcEEEEEEEEeCH--HHHHHHHHHHHHHhhhhCCCc---cCCCCCEEEEecccCCCCCCCCccEEEEEEEE
Confidence            5677788999999999999964  44566666664 699999964   2345778888    4455431 1234599999


Q ss_pred             eecc
Q 030965          163 VERK  166 (168)
Q Consensus       163 v~~~  166 (168)
                      |+.+
T Consensus       166 Ikk~  169 (173)
T d1d5ya3         166 IRRK  169 (173)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            9865

>d1jyha_ d.60.1.3 (A:) Gyrase inhibitory protein GyrI (SbmC, YeeB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Probable bacterial effector-binding domain
superfamily: Probable bacterial effector-binding domain
family: Gyrase inhibitory protein GyrI (SbmC, YeeB)
domain: Gyrase inhibitory protein GyrI (SbmC, YeeB)
species: Escherichia coli [TaxId: 562]

Probab=87.22  E-value=1.5  Score=29.27  Aligned_cols=70  Identities=20%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CeEEEeeCCcEEEEEEecCcCChHHHHHHHHHHHHHHhcCCCcceecCCcEEEEEeCCCCCCC-CCCeeeEEEEee
Q 030965           90 SVRIKEVPKKVVAVVAFSGFVTDEDVKRRELKLRDALKGDRQFRVKEGASVEVAQYNPPFTLP-FTRRNEIALEVE  164 (168)
Q Consensus        90 ~V~i~~~p~~~v~v~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~~~~~~~A~Yd~P~~~~-~~R~NEV~i~v~  164 (168)
                      +++|+++|+.+|+..+..|.. .+.+.+--++|.+++.++++.   . .......||.|-..+ -.-+-++-+.+.
T Consensus         2 ~~~I~~l~~~~V~g~r~~g~~-~e~i~~~w~~l~~~~~~~~~~---~-~~~~~~~~~~p~~~~~~~~~~~~~v~v~   72 (155)
T d1jyha_           2 NYEIKQEEKRTVAGFHLVGPW-EQTVKKGFEQLMMWVDSKNIV---P-KEWVAVYYDNPDETPAEKLRCDTVVTVP   72 (155)
T ss_dssp             CCEEEEECCEEEEEEEEESCH-HHHHHHHHHHHHHHHHHTTCC---C-SEEEEEECSCTTTSCGGGCEEEEEEEEC
T ss_pred             CcEEEEECCEEEEEEEEEcCc-HHHHHHHHHHHHHHHHHhCCC---C-CCceEEEecCcCcCCccceeEEEEEEcC
Confidence            478999999999999988864 445778888999999999863   3 345566677776542 223456666654