Citrus Sinensis ID: 030994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRQATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccEEEEEccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEcEEEcccccEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
massreghyrgvrkrpwgryaaeirdpwkktrvwlgtfdtpeeAALAYDGAARSLrgakaktnfpapvtnslpldlnapsdtntsnqhrwitpghhrhqrfgfcEFLQTGVlkeinfadrqatsasaqtdaavidgapvadngstpsffgivrrglpidlneppplwl
Flexible Loop (DISEMBL)
massreghyrgvrkrpwgryaaeirdpwkktrVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRQATSASAQTDAAVIDGAPVADNGSTPSFFGIVRrglpidlneppplwl
Low Complexity Region (SEG)
MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRqatsasaqtdaaVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL
Disordered region (IsUnstruct)
***********VRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGA*************************************RWITPGHHRHQRFGFCEFLQTGVLKEINFA**************************************************
Disordered Region (DISOPRED)
***********VRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA*************************************************************************************VRRGLPIDLNEPPPLWL
Disordered Region (DISEMBL)
***********VRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADR*********DAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL
Disordered Region (DISPRO)
*****EGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPV***************************************QT***KE********TSAS***DA*VIDGAPVA*NGSTPSFFGIVRRGLPIDLNEPPPLWL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRQATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q94ID6	189	Ethylene-responsive trans	yes	no	0.928	0.825	0.507	9e-40
Q40477	225	Ethylene-responsive trans	N/A	no	0.410	0.306	0.782	5e-25
Q9FE67	200	Ethylene-responsive trans	no	no	0.577	0.485	0.606	2e-24
Q9LW49	227	Ethylene-responsive trans	N/A	no	0.392	0.290	0.803	4e-24
O80340	222	Ethylene-responsive trans	no	no	0.375	0.283	0.825	1e-23
O80339	225	Ethylene-responsive trans	no	no	0.375	0.28	0.793	7e-23
Q9C5I3	166	Ethylene-responsive trans	no	no	0.380	0.385	0.781	2e-22
Q9LDE4	244	Ethylene-responsive trans	no	no	0.434	0.299	0.698	3e-22
Q9SAD4	328	Ethylene-responsive trans	no	no	0.428	0.219	0.666	2e-21
Q9ZWA2	245	Ethylene-responsive trans	no	no	0.410	0.281	0.632	1e-20

>sp|Q94ID6|ERF81_ARATH Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1

 Score =  162 bits (410), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 102/201 (50%), Positives = 121/201 (60%), Gaps = 45/201 (22%)

Query: 1   MASS---REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRG 57
           MAS+   RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG
Sbjct: 1   MASTTCAREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRG 60

Query: 58  AKAKTNFPAPVTNSLPLDLN---------APSDTNTSNQHRWI-----------TPGHHR 97
            KAKTNFP+P    L LDLN           +  N  +QH+ +           +  HH+
Sbjct: 61  IKAKTNFPSP----LSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHHQ 116

Query: 98  HQRFGFCEFLQTGVLKEINFADRQATSA----------SAQTDAAVIDGAPVADNGSTPS 147
           H R     FL+TGVL +   +D  +T A          +  +    + G P+ ++  +P 
Sbjct: 117 HHRI----FLRTGVLND-KTSDYSSTEAPLYFTSSPNTATSSPGYQVVGFPMMNSSPSPV 171

Query: 148 FFGIVRRGLPIDLNEPPPLWL 168
               VRRGL IDLNEPPPLWL
Sbjct: 172 ---TVRRGLAIDLNEPPPLWL 189

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score =  113 bits (283), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 57/69 (82%)

Query: 5  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 64
          +E HYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG KAKTNF
Sbjct: 23 KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 65 PAPVTNSLP 73
          P+P  N  P
Sbjct: 83 PSPTENQSP 91

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/99 (60%), Positives = 68/99 (68%), Gaps = 2/99 (2%)

Query: 5   REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 64
           +E H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RG+KAKTNF
Sbjct: 29  KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Query: 65  PAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGF 103
           P P   S  ++    +D+   N+    T      QRF F
Sbjct: 89  PLP-GESTTVNDGGENDSYV-NRTTVTTAREMTRQRFPF 125

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1

 Score =  110 bits (276), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 55/66 (83%)

Query: 5  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 64
          +E HYRGVRKRPWGRYAAEIRDP KK+RVWLGTFDT EEAA AYD AAR  RG KAKTNF
Sbjct: 23 KEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82

Query: 65 PAPVTN 70
          P P  N
Sbjct: 83 PLPSEN 88

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana sylvestris (taxid: 4096)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score =  108 bits (271), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 55/63 (87%)

Query: 3  SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
          +++E  YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGAKAKT
Sbjct: 19 NAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKT 78

Query: 63 NFP 65
          NFP
Sbjct: 79 NFP 81

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1

 Score =  106 bits (265), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%)

Query: 3  SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
          S +E  +RGVRKRPWGR+AAEIRDPWKK RVWLGTFD+ EEAA AYD AAR+LRG KAKT
Sbjct: 22 SVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKT 81

Query: 63 NFP 65
          NFP
Sbjct: 82 NFP 84

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5I3|ERF76_ARATH Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1

 Score =  104 bits (260), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 53/64 (82%)

Query: 8  HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAP 67
           YRGVRKRPWGRYAAEIRDP+KK+RVWLGTFDTPEEAA AYD  A   RGAKAKTNFP  
Sbjct: 19 RYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCY 78

Query: 68 VTNS 71
            N+
Sbjct: 79 NINA 82

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 58/73 (79%)

Query: 2  ASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 61
           S +E  YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+  +AA AYD AAR+LRG KAK
Sbjct: 20 GSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAK 79

Query: 62 TNFPAPVTNSLPL 74
          TNFP   + S PL
Sbjct: 80 TNFPIDCSPSSPL 92

Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SAD4|ESR1_ARATH Ethylene-responsive transcription factor ESR1 OS=Arabidopsis thaliana GN=ESR1 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/72 (66%), Positives = 53/72 (73%)

Query: 2   ASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 61
           A S    YRGVR+RPWGRYAAEIRDP  K R WLGTFDT E+AA AYD AAR+ RGAKA+
Sbjct: 50  AGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKAR 109

Query: 62  TNFPAPVTNSLP 73
           TNF  P    +P
Sbjct: 110 TNFTYPTAVIMP 121

Regulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryon patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWA2|ERF77_ARATH Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 56/79 (70%), Gaps = 10/79 (12%)

Query: 4   SREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTN 63
           S+E  YRGVR+RPWGRYAAEIRDP KK RVWLG+F+T EEAA AYD AA   RG+KA TN
Sbjct: 48  SKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTN 107

Query: 64  FP----------APVTNSL 72
           FP           PV N+L
Sbjct: 108 FPLIGYYGISSATPVNNNL 126

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
220029657	168	putative ethylene responsive element bin	1.0	1.0	1.0	8e-94
255536755	174	Ethylene-responsive transcription factor	0.970	0.936	0.690	3e-56
224079173	176	AP2/ERF domain-containing transcription	0.994	0.948	0.677	3e-55
225443626	152	PREDICTED: ethylene-responsive transcrip	0.904	1.0	0.696	7e-54
224125408	174	AP2/ERF domain-containing transcription	0.994	0.959	0.662	2e-53
388521259	167	unknown [Lotus japonicus]	0.934	0.940	0.654	1e-49
357446701	172	Ethylene responsive transcription factor	0.946	0.924	0.630	2e-48
222427667	172	ethylene responsive transcription factor	0.922	0.901	0.588	1e-46
356549303	163	PREDICTED: ethylene-responsive transcrip	0.916	0.944	0.616	9e-46
379056254	163	ethylene response factor #116 [Nicotiana	0.946	0.975	0.598	2e-45

>gi|220029657|gb|ACL78786.1| putative ethylene responsive element binding protein 1 [Citrus unshiu]

 Score =  347 bits (891), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60
           MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA
Sbjct: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60

Query: 61  KTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADR 120
           KTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADR
Sbjct: 61  KTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADR 120

Query: 121 QATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
           QATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL
Sbjct: 121 QATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536755|ref|XP_002509444.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223549343|gb|EEF50831.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 128/168 (76%), Gaps = 5/168 (2%)

Query: 3   SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
           ++REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT
Sbjct: 10  TTREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 69

Query: 63  NFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRQA 122
           NFPAP T +L LDLN PSD ++ + HRW +     H RF   EFLQTGVLKE  F    +
Sbjct: 70  NFPAPPT-ALSLDLNVPSD-HSHHHHRWASASPSGH-RFALGEFLQTGVLKEFTFKGEPS 126

Query: 123 TSASAQTDAAV--IDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
           +S        V  + GAP+ +N    SF GIVRRGLPIDLNEPPPLWL
Sbjct: 127 SSQMKNETVVVPGVGGAPLPENSGQASFLGIVRRGLPIDLNEPPPLWL 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079173|ref|XP_002305780.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222848744|gb|EEE86291.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 120/177 (67%), Positives = 133/177 (75%), Gaps = 10/177 (5%)

Query: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60
           MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA
Sbjct: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60

Query: 61  KTNFPA-PVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRF-GFCEFLQTGVL-KEINF 117
           KTNFP+ P T+ L LDLN PSD +  +  RW +  H    RF G  EFLQTGV+ KE+NF
Sbjct: 61  KTNFPSPPSTSGLSLDLNLPSDPH-HHHLRWGSSPHVGSHRFGGLGEFLQTGVVFKEMNF 119

Query: 118 ADRQATSASAQT------DAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
              +A +AS             + GAPV +N +  SF G+VRRGLPIDLNEPPPLWL
Sbjct: 120 NATEAAAASGPVVKIEGPGVGAVAGAPVPENVAPASFLGMVRRGLPIDLNEPPPLWL 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443626|ref|XP_002279760.1| PREDICTED: ethylene-responsive transcription factor 12-like [Vitis vinifera]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 127/168 (75%), Gaps = 16/168 (9%)

Query: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60
           MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA
Sbjct: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60

Query: 61  KTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADR 120
           KTNFPAP T +L LDLNAPSD       RW +P      R    EFLQTGVLK+++    
Sbjct: 61  KTNFPAPAT-ALSLDLNAPSD-------RWSSP----SGRLVLGEFLQTGVLKDMSCEG- 107

Query: 121 QATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
                SA++D+ V    P  +  +  SFFGIVRRGLPIDLNEPPPLWL
Sbjct: 108 ---GPSAKSDSTVSVAVPAPEVPTPASFFGIVRRGLPIDLNEPPPLWL 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125408|ref|XP_002329798.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222870860|gb|EEF07991.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  213 bits (543), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/175 (66%), Positives = 129/175 (73%), Gaps = 8/175 (4%)

Query: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60
           MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA
Sbjct: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60

Query: 61  KTNFPA-PVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRF-GFCEFLQTGVL-KEINF 117
           KTNFP+ P T+ L  DLN PSD +  + H W +  H    RF GF EFLQTGV+  E+N 
Sbjct: 61  KTNFPSPPSTSGLSFDLNLPSDPHHHHLH-WSSCPHLGSHRFGGFGEFLQTGVVFNEMNL 119

Query: 118 ADRQATSASAQT----DAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
              +A +AS           + G P  +N +  SF G+VRRGLPIDLNEPPPLWL
Sbjct: 120 HATEAAAASGSVAKNEGPGAVAGTPAPENVAPVSFLGMVRRGLPIDLNEPPPLWL 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521259|gb|AFK48691.1| unknown [Lotus japonicus]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 108/165 (65%), Positives = 120/165 (72%), Gaps = 8/165 (4%)

Query: 5   REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 64
           REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF
Sbjct: 10  REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 69

Query: 65  -PAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRQAT 123
            PAP+   L LDLNAPS  +  + HRW +      +     EFL TGVLK+IN    Q  
Sbjct: 70  PPAPLAAGLCLDLNAPS--SDLHHHRWPS---VPSRGLALSEFLHTGVLKDIN--PPQPP 122

Query: 124 SASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
             +    A  +  A VA+   T SF G++RRG+PIDLNEPPPLWL
Sbjct: 123 PVTVAVSAPYVTVAQVAEPSPTASFLGLIRRGIPIDLNEPPPLWL 167

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446701|ref|XP_003593626.1| Ethylene responsive transcription factor [Medicago truncatula] gi|355482674|gb|AES63877.1| Ethylene responsive transcription factor [Medicago truncatula] gi|388497928|gb|AFK37030.1| unknown [Medicago truncatula]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 120/173 (69%), Gaps = 14/173 (8%)

Query: 2   ASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 61
           +++REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK
Sbjct: 8   SANREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 67

Query: 62  TNF-PAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADR 120
           TNF PAPV   L LDLNAP     S+  RW  P      R    EFLQTGVLK+ N    
Sbjct: 68  TNFPPAPVAGGLCLDLNAP-----SSDLRW--PSVPSRGRV-LTEFLQTGVLKDFNPPPP 119

Query: 121 QATSASA-----QTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
                       +   AV     VA+N  T ++ G+VRRG+PIDLNEPPPLWL
Sbjct: 120 PPIGGVVGQRHNEVTLAVAGRTMVAENSPTAAYLGLVRRGIPIDLNEPPPLWL 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222427667|gb|ACM49843.1| ethylene responsive transcription factor 12 [Prunus salicina]

 Score =  191 bits (484), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 117/180 (65%), Gaps = 25/180 (13%)

Query: 2   ASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 61
           +SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK
Sbjct: 5   SSSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 64

Query: 62  TNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEINFADRQ 121
           TNFPAPV   L LDLN PS              H         EFL TGVL +++  D  
Sbjct: 65  TNFPAPVPGGLSLDLNIPSA------------AHWASHSGRLVEFLHTGVLNDMSCGDAT 112

Query: 122 ATSASAQTD-------------AAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
             + +  +                 + G  VA+  ST S+ G+VRRGLPIDLNEPPPLWL
Sbjct: 113 PDTTTLVSKREQPQPPVGVVGNVGGVAGGTVAEGSSTASYLGLVRRGLPIDLNEPPPLWL 172

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549303|ref|XP_003543033.1| PREDICTED: ethylene-responsive transcription factor 12-like [Glycine max]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 116/172 (67%), Gaps = 18/172 (10%)

Query: 2   ASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 61
           ++SREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK
Sbjct: 5   SASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 64

Query: 62  TNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTGVLKEIN----- 116
           TNFP      L LDLN P     S+ HRW    H   +     EFL T VL++I      
Sbjct: 65  TNFPP--APPLCLDLNVP-----SSDHRW---PHVPPRSLVLSEFLHTAVLRDIEPPQLP 114

Query: 117 FADRQATSASAQTDAAVIDGAPVADNGSTPSFFGIVRRGLPIDLNEPPPLWL 168
           F    A  A     A    G  V ++  T SF G+VRRG+PIDLNEPPPLWL
Sbjct: 115 FPPAAAIVAHRSPHAG---GVQVVESSPTASFLGLVRRGIPIDLNEPPPLWL 163

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|379056254|dbj|BAL68167.1| ethylene response factor #116 [Nicotiana tabacum]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/172 (59%), Positives = 118/172 (68%), Gaps = 13/172 (7%)

Query: 1   MASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60
           MA++REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA
Sbjct: 1   MAATREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKA 60

Query: 61  KTNFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGFCEFLQTG--VLKEINFA 118
           +TNFPA     LP DLN   + +  + HR  +      +     EFLQ G  VLK++   
Sbjct: 61  RTNFPA--APPLPFDLNL--NPSVDHHHRLTSSSSSARRLMNIGEFLQVGHPVLKDV--- 113

Query: 119 DRQATSASAQTDAAVIDGAPVADNGSTPS--FFGIVRRGLPIDLNEPPPLWL 168
                      +  V   AP  +N S P+  +FGIVRRGLPIDLNEPPPLW+
Sbjct: 114 --VGPPPPPVFNLPVSGVAPAKENESGPAAKYFGIVRRGLPIDLNEPPPLWM 163

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.636	0.566	0.614	8.5e-33
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.577	0.485	0.606	1.7e-27
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.375	0.283	0.825	5.8e-27
UNIPROTKB|Q5MFV2	235	BIERF2 "BTH-induced ERF transc	0.452	0.323	0.701	9.4e-27
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.404	0.409	0.764	1.7e-25
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.535	0.486	0.612	2e-24
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.511	0.382	0.632	3.3e-24
TAIR|locus:2092339	244	ERF7 "ethylene response factor	0.428	0.295	0.708	1e-22
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.380	0.301	0.703	1.4e-22
TAIR|locus:2031890	328	ESR1 "ENHANCER OF SHOOT REGENE	0.428	0.219	0.666	1.5e-21

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 78/127 (61%), Positives = 90/127 (70%)

Query:     4 SREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTN 63
             +RE HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAAR LRG KAKTN
Sbjct:     7 AREVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTN 66

Query:    64 FPAPVT---NSLPLDLNAPSDT--NTSNQHR--W------ITPG---HHRHQRFGFCEFL 107
             FP+P++   N LP   +A +    N  +QH+  W      + P    HH+H R     FL
Sbjct:    67 FPSPLSLDLNHLPSAPSAATAAANNQPHQHQQLWFAAPPPVPPSSDHHHQHHRI----FL 122

Query:   108 QTGVLKE 114
             +TGVL +
Sbjct:   123 RTGVLND 129

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 1.7e-27, Sum P(2) = 1.7e-27
 Identities = 60/99 (60%), Positives = 68/99 (68%)

Query:     5 REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 64
             +E H+RGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RG+KAKTNF
Sbjct:    29 KEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNF 88

Query:    65 PAPVTNSLPLDLNAPSDTNTSNQHRWITPGHHRHQRFGF 103
             P P  ++   D    +D+   N+    T      QRF F
Sbjct:    89 PLPGESTTVND-GGENDSYV-NRTTVTTAREMTRQRFPF 125

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
 Identities = 52/63 (82%), Positives = 55/63 (87%)

Query:     3 SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
             +++E  YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT EEAA AYD AAR  RGAKAKT
Sbjct:    19 NAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKT 78

Query:    63 NFP 65
             NFP
Sbjct:    79 NFP 81

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

UNIPROTKB|Q5MFV2 BIERF2 "BTH-induced ERF transcriptional factor 2" [Oryza sativa Indica Group (taxid:39946)]

 Score = 272 (100.8 bits), Expect = 9.4e-27, Sum P(2) = 9.4e-27
 Identities = 54/77 (70%), Positives = 60/77 (77%)

Query:     8 HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAP 67
             HYRGVRKRPWGRYAAEIRDP KK+RVWLGT+DT EEAA AYD AAR  RGAKAKTNFP  
Sbjct:    33 HYRGVRKRPWGRYAAEIRDPAKKSRVWLGTYDTAEEAARAYDAAAREFRGAKAKTNFPF- 91

Query:    68 VTNSLPLDLNAPSDTNT 84
              + S+     +PS  +T
Sbjct:    92 ASQSMVGCGGSPSSNST 108

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 52/68 (76%), Positives = 55/68 (80%)

Query:     9 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPV 68
             YRGVRKRPWGRYAAEIRDP+KK+RVWLGTFDTPEEAA AYD  A   RGAKAKTNFP   
Sbjct:    20 YRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPCYN 79

Query:    69 TNSLPLDL 76
              N+  L L
Sbjct:    80 INAHCLSL 87

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 57/93 (61%), Positives = 67/93 (72%)

Query:     3 SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
             +++E  YRGVRKRPWGRYAAEIRDP KKTRVWLGTFDT ++AA AYD AAR  RG KAKT
Sbjct:    25 AAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKT 84

Query:    63 NFPAPVTNSLPLDLNAPSDTNTSNQHRWITPGH 95
             NF   +  S P   +   D+ T+   R+ITP H
Sbjct:    85 NFGV-IVGSSPTQSSTVVDSPTAA--RFITPPH 114

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 55/87 (63%), Positives = 65/87 (74%)

Query:     3 SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
             S +E  +RGVRKRPWGR+AAEIRDPWKK RVWLGTFD+ EEAA AYD AAR+LRG KAKT
Sbjct:    22 SVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAARAYDSAARNLRGPKAKT 81

Query:    63 NFPAPVTNSLPLDLNAPSDTNTSNQHR 89
             NFP   ++  P +L      N  NQ++
Sbjct:    82 NFPIDSSSPPPPNLRFNQIRN-QNQNQ 107

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2092339 ERF7 "ethylene response factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 51/72 (70%), Positives = 58/72 (80%)

Query:     3 SSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKT 62
             S +E  YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+  +AA AYD AAR+LRG KAKT
Sbjct:    21 SVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKT 80

Query:    63 NFPAPVTNSLPL 74
             NFP   + S PL
Sbjct:    81 NFPIDCSPSSPL 92

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 45/64 (70%), Positives = 50/64 (78%)

Query:     5 REGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNF 64
             R  HYRGVR+RPWG++AAEIRDP K  RVWLGTF+T EEAALAYD AA   +G KAK NF
Sbjct:    35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Query:    65 PAPV 68
             P  V
Sbjct:    95 PERV 98

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2031890 ESR1 "ENHANCER OF SHOOT REGENERATION 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 48/72 (66%), Positives = 53/72 (73%)

Query:     2 ASSREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK 61
             A S    YRGVR+RPWGRYAAEIRDP  K R WLGTFDT E+AA AYD AAR+ RGAKA+
Sbjct:    50 AGSSTTRYRGVRRRPWGRYAAEIRDPMSKERRWLGTFDTAEQAACAYDSAARAFRGAKAR 109

Query:    62 TNFPAPVTNSLP 73
             TNF  P    +P
Sbjct:   110 TNFTYPTAVIMP 121

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0009887 "organ morphogenesis" evidence=IMP

GO:0010084 "specification of organ axis polarity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0048825 "cotyledon development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94ID6	ERF81_ARATH	No assigned EC number	0.5074	0.9285	0.8253	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF43 AP2/ERF domain-containing transcription factor (177 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	4e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-28
pfam00847	53	pfam00847, AP2, AP2 domain	2e-13

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  106 bits (267), Expect = 4e-31
 Identities = 41/64 (64%), Positives = 47/64 (73%)

Query: 8  HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAP 67
           YRGVR+RPWG++ AEIRDP K  RVWLGTFDT EEAA AYD AA   RG  A+ NFP  
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 68 VTNS 71
          + +S
Sbjct: 61 LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  100 bits (251), Expect = 1e-28
 Identities = 39/59 (66%), Positives = 44/59 (74%)

Query: 8  HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA 66
           YRGVR+RPWG++ AEIRDP    R+WLGTFDT EEAA AYD AA  LRG+ A  NFP 
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 30/53 (56%), Positives = 32/53 (60%), Gaps = 4/53 (7%)

Query: 8  HYRGVRKRP-WGRYAAEIRDPW--KKTRVWLGTFDTPEEAALAYDGAARSLRG 57
           Y+GVR    WGR+ AEIRDP   KK R  LGTF T EEAA A   A   LRG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.84
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.55
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.21
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	84.7

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.84  E-value=4.7e-21  Score=129.91  Aligned_cols=60  Identities=65%  Similarity=1.115  Sum_probs=56.8

Q ss_pred             CCeeEeEECCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 030994            7 GHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA   66 (168)
Q Consensus         7 S~yRGVr~r~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~~G~~A~~NFp~   66 (168)
                      |+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.++++++|.++.+|||.
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~   60 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD   60 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCC
Confidence            789999988889999999995559999999999999999999999999999999999996

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=9.6e-21  Score=129.99  Aligned_cols=63  Identities=63%  Similarity=1.098  Sum_probs=60.0

Q ss_pred             CeeEeEECCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 030994            8 HYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAPVTN   70 (168)
Q Consensus         8 ~yRGVr~r~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~~G~~A~~NFp~~~~~   70 (168)
                      +|+||+++++|||+|+|+++.+++.+|||+|+|+||||.|||.++++++|.++.+|||...|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999888999999999998999999999999999999999999999999999999998775

>PHA00280 putative NHN endonuclease

Probab=99.55  E-value=8.1e-15  Score=113.51  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             CCCCCCCeeEeEEC-CCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 030994            2 ASSREGHYRGVRKR-PWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAK   61 (168)
Q Consensus         2 ~~~ntS~yRGVr~r-~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~~G~~A~   61 (168)
                      .++|+|||+||++. ..|||+|+|.+  +||+++||.|+++|+|+.||+ ++.++||++|.
T Consensus        62 ~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         62 PKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            46899999999865 57999999999  999999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.21  E-value=2.5e-11  Score=80.15  Aligned_cols=52  Identities=35%  Similarity=0.427  Sum_probs=45.0

Q ss_pred             CCeeEeEECC-CCcEEEEEeCCCC---CceEecCCCCCHHHHHHHHHHHHHHhcCC
Q 030994            7 GHYRGVRKRP-WGRYAAEIRDPWK---KTRVWLGTFDTPEEAALAYDGAARSLRGA   58 (168)
Q Consensus         7 S~yRGVr~r~-~GKW~A~I~~~~~---gkri~LGtFdT~EEAA~AYD~Aa~~~~G~   58 (168)
                      |+|+||++.+ .++|+|+|++...   +++++||.|++++||++|++.++.+++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            7899997664 7999999998322   48999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=84.70  E-value=3.9  Score=25.98  Aligned_cols=38  Identities=18%  Similarity=0.097  Sum_probs=29.3

Q ss_pred             cEEEEEe--CCCCC--ceEecCCCCCHHHHHHHHHHHHHHhc
Q 030994           19 RYAAEIR--DPWKK--TRVWLGTFDTPEEAALAYDGAARSLR   56 (168)
Q Consensus        19 KW~A~I~--~~~~g--kri~LGtFdT~EEAA~AYD~Aa~~~~   56 (168)
                      +|..+|.  ++..|  ++++-+-|.|..||..+.......+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  44455  46888999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-17
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-17

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 8  HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA 66
          HYRGVR+RPWG++AAEIRDP K   RVWLGTF+T E+AALAYD AA  +RG++A  NFP 
Sbjct: 5  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
Query: 67 PVTN 70
           V +
Sbjct: 65 RVNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 84.7 bits (208), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)
Query: 8  HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA 66
          HYRGVR+RPWG++AAEIRDP K   RVWLGTF+T E+AALAYD AA  +RG++A  NFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61
Query: 67 PV 68
           V
Sbjct: 62 RV 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-35

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  117 bits (294), Expect = 2e-35
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 8  HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA 66
          HYRGVR+RPWG++AAEIRDP K   RVWLGTF+T E+AALAYD AA  +RG++A  NFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 67 PV 68
           V
Sbjct: 62 RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.35
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	85.4
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.26

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=2.1e-24  Score=148.38  Aligned_cols=60  Identities=68%  Similarity=1.196  Sum_probs=56.8

Q ss_pred             CeeEeEECCCCcEEEEEeCCCC-CceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030994            8 HYRGVRKRPWGRYAAEIRDPWK-KTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAP   67 (168)
Q Consensus         8 ~yRGVr~r~~GKW~A~I~~~~~-gkri~LGtFdT~EEAA~AYD~Aa~~~~G~~A~~NFp~~   67 (168)
                      +||||+++++|||+|+|++|.. |+++|||+|+|+||||+|||.|+++++|.++.+|||..
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999998899999999999874 78999999999999999999999999999999999974

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.35  E-value=0.099  Score=37.03  Aligned_cols=28  Identities=25%  Similarity=0.222  Sum_probs=21.6

Q ss_pred             CCCCCCeeEeEEC-CCCcEEEEEeCCCCCce
Q 030994            3 SSREGHYRGVRKR-PWGRYAAEIRDPWKKTR   32 (168)
Q Consensus         3 ~~ntS~yRGVr~r-~~GKW~A~I~~~~~gkr   32 (168)
                      +..+|+|+||++. +.+.|.|+-.+  +|++
T Consensus         2 ~~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            2 SHMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             --CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            3568999999766 47999999998  6654

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=85.40  E-value=0.13  Score=39.88  Aligned_cols=38  Identities=5%  Similarity=-0.135  Sum_probs=28.4

Q ss_pred             eeEeEECCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHH
Q 030994            9 YRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYD   49 (168)
Q Consensus         9 yRGVr~r~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD   49 (168)
                      .+||...+.++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            345533224568899988  5 6678999999999999964

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.26  E-value=1.8  Score=34.80  Aligned_cols=42  Identities=19%  Similarity=0.033  Sum_probs=32.3

Q ss_pred             eEeEECCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHh
Q 030994           10 RGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSL   55 (168)
Q Consensus        10 RGVr~r~~GKW~A~I~~~~~gkri~LGtFdT~EEAA~AYD~Aa~~~   55 (168)
                      .||+.++.|.|..+...  .|+++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            36877778999988665  888899996  9888887776655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	1e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  100 bits (252), Expect = 1e-29
 Identities = 42/62 (67%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 8  HYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPA 66
          HYRGVR+RPWG++AAEIRDP K   RVWLGTF+T E+AALAYD AA  +RG++A  NFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 67 PV 68
           V
Sbjct: 62 RV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=8.4e-25  Score=149.34  Aligned_cols=60  Identities=67%  Similarity=1.183  Sum_probs=55.7

Q ss_pred             CeeEeEECCCCcEEEEEeCCC-CCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 030994            8 HYRGVRKRPWGRYAAEIRDPW-KKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPAP   67 (168)
Q Consensus         8 ~yRGVr~r~~GKW~A~I~~~~-~gkri~LGtFdT~EEAA~AYD~Aa~~~~G~~A~~NFp~~   67 (168)
                      +||||+++++|||.|+|+++. +++++|||+|+|+||||+|||.|+++++|.++.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999988999999999864 558999999999999999999999999999999999974